AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030759.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030759.01.T01 MTR_6g012080 97.358 265 7 0 1 265 1 265 0.0 527
MsG0680030759.01.T01 MTR_6g011890 95.094 265 13 0 1 265 1 265 0.0 509
MsG0680030759.01.T01 MTR_6g012110 95.094 265 13 0 1 265 1 265 0.0 503
MsG0680030759.01.T01 MTR_6g011880 93.585 265 17 0 1 265 1 265 0.0 498
MsG0680030759.01.T01 MTR_6g011870 93.585 265 17 0 1 265 1 265 0.0 497
MsG0680030759.01.T01 MTR_4g094605 90.977 266 23 1 1 265 1 266 8.15e-179 492
MsG0680030759.01.T01 MTR_5g097280 75.373 268 60 3 1 265 1 265 5.90e-148 414
MsG0680030759.01.T01 MTR_6g043600 78.868 265 20 3 1 265 1 229 2.12e-140 394
MsG0680030759.01.T01 MTR_2g081090 77.982 218 46 2 49 264 19 236 1.02e-119 342
MsG0680030759.01.T01 MTR_2g081090 77.982 218 46 2 49 264 46 263 1.34e-119 342
MsG0680030759.01.T01 MTR_6g060175 52.632 209 90 4 49 253 71 274 6.02e-64 202
MsG0680030759.01.T01 MTR_1g026550 50.926 216 95 6 49 253 107 322 4.72e-61 196
MsG0680030759.01.T01 MTR_6g060175 50.718 209 84 5 49 253 71 264 2.72e-57 184
MsG0680030759.01.T01 MTR_6g033320 44.041 193 88 6 66 253 56 233 5.77e-37 131
MsG0680030759.01.T01 MTR_5g098785 36.559 279 141 10 1 253 1 269 6.64e-37 132
MsG0680030759.01.T01 MTR_5g098780 35.842 279 141 11 1 253 1 267 1.97e-35 128
MsG0680030759.01.T01 MTR_8g023790 34.884 258 122 11 9 249 28 256 6.08e-35 126
MsG0680030759.01.T01 MTR_3g101670 36.946 203 96 6 64 249 66 253 2.89e-32 119
MsG0680030759.01.T01 MTR_2g042720 36.564 227 106 10 52 260 60 266 1.74e-30 115
MsG0680030759.01.T01 MTR_3g435460 34.518 197 105 5 65 252 62 243 6.78e-29 110
MsG0680030759.01.T01 MTR_1g026550 46.825 126 63 3 47 168 105 230 7.72e-28 107
MsG0680030759.01.T01 MTR_4g015570 35.470 234 93 8 64 253 62 281 1.92e-27 107
MsG0680030759.01.T01 MTR_3g435460 33.333 189 102 5 73 252 9 182 4.03e-25 99.0
MsG0680030759.01.T01 MTR_5g098770 55.405 74 32 1 181 253 13 86 3.80e-21 85.5
MsG0680030759.01.T01 MTR_3g070340 43.871 155 66 8 93 243 137 274 1.39e-20 89.0
MsG0680030759.01.T01 MTR_2g008610 31.884 207 91 7 66 242 73 259 9.36e-17 78.2
MsG0680030759.01.T01 MTR_2g436960 49.315 73 30 2 180 252 27 92 2.05e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030759.01.T01 AT1G29930 87.640 267 31 2 1 265 1 267 3.53e-171 473
MsG0680030759.01.T01 AT1G29920 87.266 267 32 2 1 265 1 267 2.20e-170 471
MsG0680030759.01.T01 AT1G29910 87.266 267 32 2 1 265 1 267 2.20e-170 471
MsG0680030759.01.T01 AT2G34430 87.640 267 30 3 1 265 1 266 6.58e-169 468
MsG0680030759.01.T01 AT2G34420 87.640 267 29 3 1 265 1 265 1.34e-168 466
MsG0680030759.01.T01 AT3G27690 77.122 271 51 4 2 265 32 298 2.15e-150 422
MsG0680030759.01.T01 AT3G27690 77.574 272 48 5 1 265 1 266 3.51e-150 420
MsG0680030759.01.T01 AT2G05070 77.612 268 54 3 1 265 1 265 4.46e-150 420
MsG0680030759.01.T01 AT2G05100 77.122 271 50 5 1 265 1 265 9.80e-149 416
MsG0680030759.01.T01 AT2G05100 76.132 243 46 5 1 237 1 237 9.43e-127 363
MsG0680030759.01.T01 AT5G54270 69.288 267 66 7 10 264 2 264 5.36e-120 343
MsG0680030759.01.T01 AT1G76570 47.162 229 111 5 35 253 92 320 4.90e-62 198
MsG0680030759.01.T01 AT4G10340 50.711 211 95 4 47 253 60 265 1.26e-59 191
MsG0680030759.01.T01 AT3G54890 45.078 193 86 6 66 253 55 232 3.45e-38 134
MsG0680030759.01.T01 AT1G61520 40.553 217 94 9 62 253 59 265 2.57e-36 130
MsG0680030759.01.T01 AT1G61520 40.553 217 94 9 62 253 59 265 2.57e-36 130
MsG0680030759.01.T01 AT1G45474 37.445 227 125 6 32 249 24 242 5.98e-35 126
MsG0680030759.01.T01 AT1G45474 37.445 227 125 6 32 249 24 242 5.98e-35 126
MsG0680030759.01.T01 AT3G61470 38.605 215 96 9 52 249 50 245 7.73e-35 126
MsG0680030759.01.T01 AT1G61520 39.130 207 91 9 73 254 15 211 5.28e-33 120
MsG0680030759.01.T01 AT3G47470 39.583 192 102 7 65 252 63 244 6.38e-30 113
MsG0680030759.01.T01 AT1G19150 36.564 227 106 9 52 260 63 269 6.92e-30 113
MsG0680030759.01.T01 AT3G08940 35.000 260 107 11 39 253 37 279 1.20e-27 108
MsG0680030759.01.T01 AT5G01530 36.481 233 90 9 65 253 64 282 3.70e-27 106
MsG0680030759.01.T01 AT3G54890 41.401 157 73 5 66 218 55 196 4.32e-24 97.1
MsG0680030759.01.T01 AT3G54890 37.895 190 70 6 66 253 55 198 5.38e-24 96.3
MsG0680030759.01.T01 AT2G40100 40.909 154 71 6 93 243 136 272 4.18e-22 92.8
MsG0680030759.01.T01 AT1G15820 33.333 207 88 7 66 242 70 256 7.60e-18 80.9
MsG0680030759.01.T01 AT5G28450 57.143 63 25 2 189 249 99 161 7.82e-14 68.2
MsG0680030759.01.T01 AT3G54890 42.353 85 41 2 66 149 55 132 3.25e-11 60.8

Find 111 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAGCATCCTCGCTATA+TGG 0.214996 6:+8692369 MsG0680030759.01.T01:CDS
GTTCTCTAGTGGTCCCTTTC+CGG 0.227548 6:-8692609 None:intergenic
TCCAGATGGGACGTTCTTCT+TGG 0.255811 6:-8692024 None:intergenic
GGCTTGCCAAGTTATCTTAA+TGG 0.287427 6:+8692391 MsG0680030759.01.T01:CDS
TTAGCTATGTTCTCGATGTT+TGG 0.329305 6:+8692563 MsG0680030759.01.T01:CDS
ATGGGCTATGTTGGGTGCAT+TGG 0.333471 6:+8692217 MsG0680030759.01.T01:CDS
CTAGTAACTTTCTCACTTCC+CGG 0.348789 6:-8692696 None:intergenic
GACTATGGTTGGGACACTGC+TGG 0.354408 6:+8692134 MsG0680030759.01.T01:CDS
GGTGAATTTCCTGGTGACTA+TGG 0.363361 6:+8692119 MsG0680030759.01.T01:CDS
TGAAGGTGGGCTTGACTACT+TGG 0.367959 6:+8692325 MsG0680030759.01.T01:CDS
TACCTCACTGGTGAATTTCC+TGG 0.369528 6:+8692110 MsG0680030759.01.T01:CDS
TTCGTTCAGGCCATTGTAAC+CGG 0.370708 6:+8692590 MsG0680030759.01.T01:CDS
CTCTCTTCTTCAACAATGGT+TGG 0.383826 6:+8691930 MsG0680030759.01.T01:CDS
AAGTACTTGGGTCCATTCTC+TGG 0.385387 6:+8692074 MsG0680030759.01.T01:CDS
GCTTGCCAAGTTATCTTAAT+GGG 0.390364 6:+8692392 MsG0680030759.01.T01:CDS
TGGGCTATGTTGGGTGCATT+GGG 0.391652 6:+8692218 MsG0680030759.01.T01:CDS
CTTTGTGCATGAACTAGGCT+TGG 0.392370 6:-8692353 None:intergenic
ACCCTGTCAACAACAACGCC+TGG 0.401231 6:+8692651 MsG0680030759.01.T01:CDS
GCCCAGGCGTTGTTGTTGAC+AGG 0.410698 6:-8692653 None:intergenic
TTCAACTCAGCAAAAGCCTC+TGG 0.411824 6:-8692515 None:intergenic
CCCAAGTACTTGACACGGTC+TGG 0.412244 6:-8692062 None:intergenic
TCCAGACCGTGTCAAGTACT+TGG 0.414229 6:+8692061 MsG0680030759.01.T01:CDS
AGGAGGAAGCTTTGATCCAT+TGG 0.422685 6:+8692478 MsG0680030759.01.T01:CDS
GGATGCTTTGTGCATGAACT+AGG 0.430981 6:-8692358 None:intergenic
CGTATTGCTGGTGGACCTCT+TGG 0.432323 6:+8692431 MsG0680030759.01.T01:CDS
CAGCTCCCATTAAGATAACT+TGG 0.436887 6:-8692397 None:intergenic
GTGGAGGGTTACCGTATTGC+TGG 0.438239 6:+8692419 MsG0680030759.01.T01:CDS
ACCAAGAAGAACGTCCCATC+TGG 0.439369 6:+8692023 MsG0680030759.01.T01:CDS
TCTCTTCTTCAACAATGGTT+GGG 0.445775 6:+8691931 MsG0680030759.01.T01:CDS
GGAGGAAGCTTTGATCCATT+GGG 0.451132 6:+8692479 MsG0680030759.01.T01:CDS
TTCGCCACAAACTTTGTCCC+CGG 0.454754 6:+8692677 MsG0680030759.01.T01:CDS
GGCTCTCTCTTCTTCAACAA+TGG 0.456801 6:+8691926 MsG0680030759.01.T01:CDS
CCATAGCAGATGGGCTATGT+TGG 0.462149 6:+8692208 MsG0680030759.01.T01:CDS
CGGCGAGGCTGTGTGGTTCA+AGG 0.463771 6:+8692283 MsG0680030759.01.T01:CDS
ACAAAGCATCCTCGCTATAT+GGG 0.466861 6:+8692370 MsG0680030759.01.T01:CDS
TCTCGCAATAGTGTCAAATT+CGG 0.479487 6:+8692263 MsG0680030759.01.T01:CDS
CATAGCAGATGGGCTATGTT+GGG 0.481076 6:+8692209 MsG0680030759.01.T01:CDS
CTTCCCGGGGACAAAGTTTG+TGG 0.482081 6:-8692681 None:intergenic
CAGGCCATTGTAACCGGAAA+GGG 0.483589 6:+8692596 MsG0680030759.01.T01:CDS
ATTCTTCCCATTCCAAGGTC+CGG 0.484853 6:-8691981 None:intergenic
CACGGTCTGGACCGTACCAC+GGG 0.486076 6:-8692049 None:intergenic
AATTCACCAGTGAGGTAAGA+TGG 0.486152 6:-8692104 None:intergenic
ACTATGGTTGGGACACTGCT+GGG 0.487785 6:+8692135 MsG0680030759.01.T01:CDS
TTCTTCAACAATGGTTGGGA+AGG 0.494108 6:+8691935 MsG0680030759.01.T01:CDS
AATGGATCAAAGCTTCCTCC+TGG 0.501671 6:-8692476 None:intergenic
TGGTGATTCTTCCCATTCCA+AGG 0.504036 6:-8691986 None:intergenic
AATTTCCTGGTGACTATGGT+TGG 0.506431 6:+8692123 MsG0680030759.01.T01:CDS
CCCTGTCAACAACAACGCCT+GGG 0.507230 6:+8692652 MsG0680030759.01.T01:CDS
TTTGTGCATGAACTAGGCTT+GGG 0.507715 6:-8692352 None:intergenic
CTCTACTCCGGACCTTGGAA+TGG 0.512189 6:+8691974 MsG0680030759.01.T01:CDS
CTATTGCGAGACAAGAGCTC+AGG 0.512409 6:-8692251 None:intergenic
AGATGGGACGTTCTTCTTGG+TGG 0.514625 6:-8692021 None:intergenic
GAGGCTGTGTGGTTCAAGGC+AGG 0.515376 6:+8692287 MsG0680030759.01.T01:CDS
TCTACTCCGGACCTTGGAAT+GGG 0.515771 6:+8691975 MsG0680030759.01.T01:CDS
TAGTAACTTTCTCACTTCCC+GGG 0.517152 6:-8692695 None:intergenic
CCAACATAGCCCATCTGCTA+TGG 0.520857 6:-8692208 None:intergenic
GATGGAGCTTCACCAGAGAA+TGG 0.521781 6:-8692086 None:intergenic
TATGGATGACCTCAAGTTCA+CGG 0.522252 6:-8692190 None:intergenic
AAGCTTCCTCCTGGGTAAAG+TGG 0.522451 6:-8692467 None:intergenic
CATTCCAAGGTCCGGAGTAG+AGG 0.523327 6:-8691973 None:intergenic
TATCTTAATGGGAGCTGTGG+AGG 0.528220 6:+8692403 MsG0680030759.01.T01:CDS
CCGTACCACGGGCTTCCAGA+TGG 0.528438 6:-8692038 None:intergenic
ATTCCAAGGTCCGGAGTAGA+GGG 0.529649 6:-8691972 None:intergenic
AGCTTCCTCCTGGGTAAAGT+GGG 0.531940 6:-8692466 None:intergenic
GGGGACAAAGTTTGTGGCGA+AGG 0.532625 6:-8692675 None:intergenic
TGAAAGAACTAAAGAATGGT+AGG 0.533963 6:+8692540 MsG0680030759.01.T01:CDS
TCGCCACAAACTTTGTCCCC+GGG 0.539051 6:+8692678 MsG0680030759.01.T01:CDS
CCCAGGCGTTGTTGTTGACA+GGG 0.539292 6:-8692652 None:intergenic
TTGAGGTCATCCATAGCAGA+TGG 0.543946 6:+8692198 MsG0680030759.01.T01:CDS
ATCTTAATGGGAGCTGTGGA+GGG 0.548899 6:+8692404 MsG0680030759.01.T01:CDS
AAAGTTTGTGGCGAAGGCCC+AGG 0.551356 6:-8692669 None:intergenic
ACACGGTCTGGACCGTACCA+CGG 0.551715 6:-8692050 None:intergenic
CCATCTGGAAGCCCGTGGTA+CGG 0.554193 6:+8692038 MsG0680030759.01.T01:CDS
AAGGTGAAAGAACTAAAGAA+TGG 0.554381 6:+8692536 MsG0680030759.01.T01:CDS
CAAGAGGTCCACCAGCAATA+CGG 0.554867 6:-8692430 None:intergenic
GAAGCTCCATCTTACCTCAC+TGG 0.557671 6:+8692098 MsG0680030759.01.T01:CDS
TGGTCCCTTTCCGGTTACAA+TGG 0.557705 6:-8692600 None:intergenic
ATTTCCTGGTGACTATGGTT+GGG 0.565504 6:+8692124 MsG0680030759.01.T01:CDS
CGTACCACGGGCTTCCAGAT+GGG 0.565698 6:-8692037 None:intergenic
TCAACTCAGCAAAAGCCTCT+GGG 0.575812 6:-8692514 None:intergenic
GGTCAGCAAGGTGGTCAGCA+AGG 0.578101 6:-8692631 None:intergenic
CCAGACCGTGTCAAGTACTT+GGG 0.592167 6:+8692062 MsG0680030759.01.T01:CDS
TCCAAGGTCCGGAGTAGAGG+GGG 0.592278 6:-8691970 None:intergenic
TCAAATTCGGCGAGGCTGTG+TGG 0.592560 6:+8692276 MsG0680030759.01.T01:CDS
ATGGATCAAAGCTTCCTCCT+GGG 0.595281 6:-8692475 None:intergenic
GGGTCGTCAGAGAGGCCCAA+TGG 0.597262 6:-8692494 None:intergenic
AGTTATCTTAATGGGAGCTG+TGG 0.599582 6:+8692400 MsG0680030759.01.T01:CDS
TGTTGTTGACAGGGTCAGCA+AGG 0.601650 6:-8692643 None:intergenic
TCAGGCCATTGTAACCGGAA+AGG 0.602000 6:+8692595 MsG0680030759.01.T01:CDS
TGCTGGTGGACCTCTTGGTG+AGG 0.612383 6:+8692436 MsG0680030759.01.T01:CDS
GTGTCCCAACCATAGTCACC+AGG 0.616804 6:-8692128 None:intergenic
AAGCCTCTGGGTCGTCAGAG+AGG 0.618903 6:-8692502 None:intergenic
GAAGGTGGGCTTGACTACTT+GGG 0.630872 6:+8692326 MsG0680030759.01.T01:CDS
TGAGGTCATCCATAGCAGAT+GGG 0.639446 6:+8692199 MsG0680030759.01.T01:CDS
GAGGGTTACCGTATTGCTGG+TGG 0.648889 6:+8692422 MsG0680030759.01.T01:CDS
TATTGCGAGACAAGAGCTCA+GGG 0.649412 6:-8692250 None:intergenic
TGGTCAGCAAGGTTCTCTAG+TGG 0.656980 6:-8692620 None:intergenic
AGTAACTTTCTCACTTCCCG+GGG 0.665390 6:-8692694 None:intergenic
TAGCATGGCTACATCAACAA+TGG 0.668668 6:+8691905 None:intergenic
GGGCCTCTCTGACGACCCAG+AGG 0.671120 6:+8692499 MsG0680030759.01.T01:CDS
ACGTCCCATCTGGAAGCCCG+TGG 0.680056 6:+8692033 MsG0680030759.01.T01:CDS
TGTTGACAGGGTCAGCAAGG+TGG 0.684824 6:-8692640 None:intergenic
CTTGGCAAGCCCATATAGCG+AGG 0.684946 6:-8692379 None:intergenic
TTCCAAGGTCCGGAGTAGAG+GGG 0.685968 6:-8691971 None:intergenic
GGGTCGACTACCTCACCAAG+AGG 0.687407 6:-8692446 None:intergenic
GTAGTCGACCCACTTTACCC+AGG 0.687871 6:+8692458 MsG0680030759.01.T01:CDS
GTCGACCCACTTTACCCAGG+AGG 0.705815 6:+8692461 MsG0680030759.01.T01:CDS
CAATAGTGTCAAATTCGGCG+AGG 0.707351 6:+8692268 MsG0680030759.01.T01:CDS
ATGGACCCAAGTACTTGACA+CGG 0.711188 6:-8692067 None:intergenic
CACCAGGAAATTCACCAGTG+AGG 0.714950 6:-8692112 None:intergenic
GAATGGGAAGAATCACCATG+AGG 0.742900 6:+8691991 MsG0680030759.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGGTGAAAGAACTAAAGAA+TGG + Chr6:8692536-8692555 MsG0680030759.01.T01:CDS 30.0%
TGAAAGAACTAAAGAATGGT+AGG + Chr6:8692540-8692559 MsG0680030759.01.T01:CDS 30.0%
CCCACCTTCACTAAAAATTT+GGG - Chr6:8692315-8692334 None:intergenic 35.0%
GCTTGCCAAGTTATCTTAAT+GGG + Chr6:8692392-8692411 MsG0680030759.01.T01:CDS 35.0%
TCTCGCAATAGTGTCAAATT+CGG + Chr6:8692263-8692282 MsG0680030759.01.T01:CDS 35.0%
TCTCTTCTTCAACAATGGTT+GGG + Chr6:8691931-8691950 MsG0680030759.01.T01:CDS 35.0%
TTAGCTATGTTCTCGATGTT+TGG + Chr6:8692563-8692582 MsG0680030759.01.T01:CDS 35.0%
! GATGTTTGGATTTTTCGTTC+AGG + Chr6:8692577-8692596 MsG0680030759.01.T01:CDS 35.0%
!!! CCCAAATTTTTAGTGAAGGT+GGG + Chr6:8692312-8692331 MsG0680030759.01.T01:CDS 35.0%
!!! GGATCCCAAATTTTTAGTGA+AGG + Chr6:8692308-8692327 MsG0680030759.01.T01:CDS 35.0%
!!! TCCCAAATTTTTAGTGAAGG+TGG + Chr6:8692311-8692330 MsG0680030759.01.T01:CDS 35.0%
AATTCACCAGTGAGGTAAGA+TGG - Chr6:8692107-8692126 None:intergenic 40.0%
AATTTCCTGGTGACTATGGT+TGG + Chr6:8692123-8692142 MsG0680030759.01.T01:CDS 40.0%
AGTTATCTTAATGGGAGCTG+TGG + Chr6:8692400-8692419 MsG0680030759.01.T01:CDS 40.0%
ATTTCCTGGTGACTATGGTT+GGG + Chr6:8692124-8692143 MsG0680030759.01.T01:CDS 40.0%
CAGCTCCCATTAAGATAACT+TGG - Chr6:8692400-8692419 None:intergenic 40.0%
CTCTCTTCTTCAACAATGGT+TGG + Chr6:8691930-8691949 MsG0680030759.01.T01:CDS 40.0%
GCCCACCTTCACTAAAAATT+TGG - Chr6:8692316-8692335 None:intergenic 40.0%
GGCTTGCCAAGTTATCTTAA+TGG + Chr6:8692391-8692410 MsG0680030759.01.T01:CDS 40.0%
TATGGATGACCTCAAGTTCA+CGG - Chr6:8692193-8692212 None:intergenic 40.0%
TTCTTCAACAATGGTTGGGA+AGG + Chr6:8691935-8691954 MsG0680030759.01.T01:CDS 40.0%
TTTGTGCATGAACTAGGCTT+GGG - Chr6:8692355-8692374 None:intergenic 40.0%
! ACAAAGCATCCTCGCTATAT+GGG + Chr6:8692370-8692389 MsG0680030759.01.T01:CDS 40.0%
!!! ACGGTTTTTGGCAAATGTCT+CGG - Chr6:8692174-8692193 None:intergenic 40.0%
AAGTACTTGGGTCCATTCTC+TGG + Chr6:8692074-8692093 MsG0680030759.01.T01:CDS 45.0%
AATGGATCAAAGCTTCCTCC+TGG - Chr6:8692479-8692498 None:intergenic 45.0%
ATCTTAATGGGAGCTGTGGA+GGG + Chr6:8692404-8692423 MsG0680030759.01.T01:CDS 45.0%
ATGGACCCAAGTACTTGACA+CGG - Chr6:8692070-8692089 None:intergenic 45.0%
ATGGATCAAAGCTTCCTCCT+GGG - Chr6:8692478-8692497 None:intergenic 45.0%
ATTCTTCCCATTCCAAGGTC+CGG - Chr6:8691984-8692003 None:intergenic 45.0%
CAATAGTGTCAAATTCGGCG+AGG + Chr6:8692268-8692287 MsG0680030759.01.T01:CDS 45.0%
CTTTGTGCATGAACTAGGCT+TGG - Chr6:8692356-8692375 None:intergenic 45.0%
GAATGGGAAGAATCACCATG+AGG + Chr6:8691991-8692010 MsG0680030759.01.T01:CDS 45.0%
GGATGCTTTGTGCATGAACT+AGG - Chr6:8692361-8692380 None:intergenic 45.0%
GGCTCTCTCTTCTTCAACAA+TGG + Chr6:8691926-8691945 MsG0680030759.01.T01:CDS 45.0%
GGTGAATTTCCTGGTGACTA+TGG + Chr6:8692119-8692138 MsG0680030759.01.T01:CDS 45.0%
TACCTCACTGGTGAATTTCC+TGG + Chr6:8692110-8692129 MsG0680030759.01.T01:CDS 45.0%
TATCTTAATGGGAGCTGTGG+AGG + Chr6:8692403-8692422 MsG0680030759.01.T01:CDS 45.0%
TATTGCGAGACAAGAGCTCA+GGG - Chr6:8692253-8692272 None:intergenic 45.0%
TCAACTCAGCAAAAGCCTCT+GGG - Chr6:8692517-8692536 None:intergenic 45.0%
TGAGGTCATCCATAGCAGAT+GGG + Chr6:8692199-8692218 MsG0680030759.01.T01:CDS 45.0%
TGCCAAAAACCGTGAACTTG+AGG + Chr6:8692181-8692200 MsG0680030759.01.T01:CDS 45.0%
TGGTGATTCTTCCCATTCCA+AGG - Chr6:8691989-8692008 None:intergenic 45.0%
TTCAACTCAGCAAAAGCCTC+TGG - Chr6:8692518-8692537 None:intergenic 45.0%
TTCGTTCAGGCCATTGTAAC+CGG + Chr6:8692590-8692609 MsG0680030759.01.T01:CDS 45.0%
TTGAGGTCATCCATAGCAGA+TGG + Chr6:8692198-8692217 MsG0680030759.01.T01:CDS 45.0%
! AGGAGGAAGCTTTGATCCAT+TGG + Chr6:8692478-8692497 MsG0680030759.01.T01:CDS 45.0%
! CACAAAGCATCCTCGCTATA+TGG + Chr6:8692369-8692388 MsG0680030759.01.T01:CDS 45.0%
! GACCTCAAGTTCACGGTTTT+TGG - Chr6:8692186-8692205 None:intergenic 45.0%
! GGAGGAAGCTTTGATCCATT+GGG + Chr6:8692479-8692498 MsG0680030759.01.T01:CDS 45.0%
!! AGAGGCTTTTGCTGAGTTGA+AGG + Chr6:8692517-8692536 MsG0680030759.01.T01:CDS 45.0%
!! CATAGCAGATGGGCTATGTT+GGG + Chr6:8692209-8692228 MsG0680030759.01.T01:CDS 45.0%
!! CTTGGTGGTTGTTTTCCTCA+TGG - Chr6:8692009-8692028 None:intergenic 45.0%
!!! CGGTTTTTGGCAAATGTCTC+GGG - Chr6:8692173-8692192 None:intergenic 45.0%
!!! GGTTTTTGGCAAATGTCTCG+GGG - Chr6:8692172-8692191 None:intergenic 45.0%
AAGCTTCCTCCTGGGTAAAG+TGG - Chr6:8692470-8692489 None:intergenic 50.0%
ACCAAGAAGAACGTCCCATC+TGG + Chr6:8692023-8692042 MsG0680030759.01.T01:CDS 50.0%
ACTATGGTTGGGACACTGCT+GGG + Chr6:8692135-8692154 MsG0680030759.01.T01:CDS 50.0%
AGATGGGACGTTCTTCTTGG+TGG - Chr6:8692024-8692043 None:intergenic 50.0%
AGCTTCCTCCTGGGTAAAGT+GGG - Chr6:8692469-8692488 None:intergenic 50.0%
ATTCCAAGGTCCGGAGTAGA+GGG - Chr6:8691975-8691994 None:intergenic 50.0%
CAAGAGGTCCACCAGCAATA+CGG - Chr6:8692433-8692452 None:intergenic 50.0%
CACCAGGAAATTCACCAGTG+AGG - Chr6:8692115-8692134 None:intergenic 50.0%
CAGGCCATTGTAACCGGAAA+GGG + Chr6:8692596-8692615 MsG0680030759.01.T01:CDS 50.0%
CCAACATAGCCCATCTGCTA+TGG - Chr6:8692211-8692230 None:intergenic 50.0%
CCAGACCGTGTCAAGTACTT+GGG + Chr6:8692062-8692081 MsG0680030759.01.T01:CDS 50.0%
CTATTGCGAGACAAGAGCTC+AGG - Chr6:8692254-8692273 None:intergenic 50.0%
GAAGCTCCATCTTACCTCAC+TGG + Chr6:8692098-8692117 MsG0680030759.01.T01:CDS 50.0%
GATGGAGCTTCACCAGAGAA+TGG - Chr6:8692089-8692108 None:intergenic 50.0%
GTTCTCTAGTGGTCCCTTTC+CGG - Chr6:8692612-8692631 None:intergenic 50.0%
TCAGGCCATTGTAACCGGAA+AGG + Chr6:8692595-8692614 MsG0680030759.01.T01:CDS 50.0%
TCCAGACCGTGTCAAGTACT+TGG + Chr6:8692061-8692080 MsG0680030759.01.T01:CDS 50.0%
TCCAGATGGGACGTTCTTCT+TGG - Chr6:8692027-8692046 None:intergenic 50.0%
TCTACTCCGGACCTTGGAAT+GGG + Chr6:8691975-8691994 MsG0680030759.01.T01:CDS 50.0%
TGGGCTATGTTGGGTGCATT+GGG + Chr6:8692218-8692237 MsG0680030759.01.T01:CDS 50.0%
TGGTCAGCAAGGTTCTCTAG+TGG - Chr6:8692623-8692642 None:intergenic 50.0%
TGGTCCCTTTCCGGTTACAA+TGG - Chr6:8692603-8692622 None:intergenic 50.0%
TGTTGTTGACAGGGTCAGCA+AGG - Chr6:8692646-8692665 None:intergenic 50.0%
TTCGCCACAAACTTTGTCCC+CGG + Chr6:8692677-8692696 MsG0680030759.01.T01:CDS 50.0%
! ATGGGCTATGTTGGGTGCAT+TGG + Chr6:8692217-8692236 MsG0680030759.01.T01:CDS 50.0%
! GAAGGTGGGCTTGACTACTT+GGG + Chr6:8692326-8692345 MsG0680030759.01.T01:CDS 50.0%
! TGAAGGTGGGCTTGACTACT+TGG + Chr6:8692325-8692344 MsG0680030759.01.T01:CDS 50.0%
!! CCATAGCAGATGGGCTATGT+TGG + Chr6:8692208-8692227 MsG0680030759.01.T01:CDS 50.0%
AAAGTTTGTGGCGAAGGCCC+AGG - Chr6:8692672-8692691 None:intergenic 55.0%
ACCCTGTCAACAACAACGCC+TGG + Chr6:8692651-8692670 MsG0680030759.01.T01:CDS 55.0%
CAAGCTTTCCCCCTCTACTC+CGG + Chr6:8691962-8691981 MsG0680030759.01.T01:CDS 55.0%
CATTCCAAGGTCCGGAGTAG+AGG - Chr6:8691976-8691995 None:intergenic 55.0%
CCCAAGTACTTGACACGGTC+TGG - Chr6:8692065-8692084 None:intergenic 55.0%
CCCTGTCAACAACAACGCCT+GGG + Chr6:8692652-8692671 MsG0680030759.01.T01:CDS 55.0%
CTCTACTCCGGACCTTGGAA+TGG + Chr6:8691974-8691993 MsG0680030759.01.T01:CDS 55.0%
CTTCCCGGGGACAAAGTTTG+TGG - Chr6:8692684-8692703 None:intergenic 55.0%
CTTGGCAAGCCCATATAGCG+AGG - Chr6:8692382-8692401 None:intergenic 55.0%
GACTATGGTTGGGACACTGC+TGG + Chr6:8692134-8692153 MsG0680030759.01.T01:CDS 55.0%
GAGGGTTACCGTATTGCTGG+TGG + Chr6:8692422-8692441 MsG0680030759.01.T01:CDS 55.0%
GGGGACAAAGTTTGTGGCGA+AGG - Chr6:8692678-8692697 None:intergenic 55.0%
GTAGTCGACCCACTTTACCC+AGG + Chr6:8692458-8692477 MsG0680030759.01.T01:CDS 55.0%
GTGGAGGGTTACCGTATTGC+TGG + Chr6:8692419-8692438 MsG0680030759.01.T01:CDS 55.0%
GTGTCCCAACCATAGTCACC+AGG - Chr6:8692131-8692150 None:intergenic 55.0%
TCAAATTCGGCGAGGCTGTG+TGG + Chr6:8692276-8692295 MsG0680030759.01.T01:CDS 55.0%
TCGCCACAAACTTTGTCCCC+GGG + Chr6:8692678-8692697 MsG0680030759.01.T01:CDS 55.0%
TGTTGACAGGGTCAGCAAGG+TGG - Chr6:8692643-8692662 None:intergenic 55.0%
TTCCAAGGTCCGGAGTAGAG+GGG - Chr6:8691974-8691993 None:intergenic 55.0%
! CCCAGGCGTTGTTGTTGACA+GGG - Chr6:8692655-8692674 None:intergenic 55.0%
! CGTATTGCTGGTGGACCTCT+TGG + Chr6:8692431-8692450 MsG0680030759.01.T01:CDS 55.0%
AAGCCTCTGGGTCGTCAGAG+AGG - Chr6:8692505-8692524 None:intergenic 60.0%
ACACGGTCTGGACCGTACCA+CGG - Chr6:8692053-8692072 None:intergenic 60.0%
CCATCTGGAAGCCCGTGGTA+CGG + Chr6:8692038-8692057 MsG0680030759.01.T01:CDS 60.0%
CGTACCACGGGCTTCCAGAT+GGG - Chr6:8692040-8692059 None:intergenic 60.0%
GAGGCTGTGTGGTTCAAGGC+AGG + Chr6:8692287-8692306 MsG0680030759.01.T01:CDS 60.0%
GGGTCGACTACCTCACCAAG+AGG - Chr6:8692449-8692468 None:intergenic 60.0%
GGTCAGCAAGGTGGTCAGCA+AGG - Chr6:8692634-8692653 None:intergenic 60.0%
GTCGACCCACTTTACCCAGG+AGG + Chr6:8692461-8692480 MsG0680030759.01.T01:CDS 60.0%
TCCAAGGTCCGGAGTAGAGG+GGG - Chr6:8691973-8691992 None:intergenic 60.0%
! GCCCAGGCGTTGTTGTTGAC+AGG - Chr6:8692656-8692675 None:intergenic 60.0%
! TGCTGGTGGACCTCTTGGTG+AGG + Chr6:8692436-8692455 MsG0680030759.01.T01:CDS 60.0%
ACGTCCCATCTGGAAGCCCG+TGG + Chr6:8692033-8692052 MsG0680030759.01.T01:CDS 65.0%
CACGGTCTGGACCGTACCAC+GGG - Chr6:8692052-8692071 None:intergenic 65.0%
CCGTACCACGGGCTTCCAGA+TGG - Chr6:8692041-8692060 None:intergenic 65.0%
CGGCGAGGCTGTGTGGTTCA+AGG + Chr6:8692283-8692302 MsG0680030759.01.T01:CDS 65.0%
GGGTCGTCAGAGAGGCCCAA+TGG - Chr6:8692497-8692516 None:intergenic 65.0%
TCCCCCTCTACTCCGGACCT+TGG + Chr6:8691969-8691988 MsG0680030759.01.T01:CDS 65.0%
GGGCCTCTCTGACGACCCAG+AGG + Chr6:8692499-8692518 MsG0680030759.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 8691909 8692706 8691909 ID=MsG0680030759.01;Name=MsG0680030759.01
Chr6 mRNA 8691909 8692706 8691909 ID=MsG0680030759.01.T01;Parent=MsG0680030759.01;Name=MsG0680030759.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|265
Chr6 exon 8691909 8692706 8691909 ID=MsG0680030759.01.T01:exon:7208;Parent=MsG0680030759.01.T01
Chr6 CDS 8691909 8692706 8691909 ID=MsG0680030759.01.T01:cds;Parent=MsG0680030759.01.T01
Gene Sequence

>MsG0680030759.01.T01

ATGGCTACATCAACAATGGCTCTCTCTTCTTCAACAATGGTTGGGAAGGCAATCAAGCTTTCCCCCTCTACTCCGGACCTTGGAATGGGAAGAATCACCATGAGGAAAACAACCACCAAGAAGAACGTCCCATCTGGAAGCCCGTGGTACGGTCCAGACCGTGTCAAGTACTTGGGTCCATTCTCTGGTGAAGCTCCATCTTACCTCACTGGTGAATTTCCTGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCCGAGACATTTGCCAAAAACCGTGAACTTGAGGTCATCCATAGCAGATGGGCTATGTTGGGTGCATTGGGATGCGTCTTCCCTGAGCTCTTGTCTCGCAATAGTGTCAAATTCGGCGAGGCTGTGTGGTTCAAGGCAGGATCCCAAATTTTTAGTGAAGGTGGGCTTGACTACTTGGGTAACCCAAGCCTAGTTCATGCACAAAGCATCCTCGCTATATGGGCTTGCCAAGTTATCTTAATGGGAGCTGTGGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTAGTCGACCCACTTTACCCAGGAGGAAGCTTTGATCCATTGGGCCTCTCTGACGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAACTAAAGAATGGTAGGTTAGCTATGTTCTCGATGTTTGGATTTTTCGTTCAGGCCATTGTAACCGGAAAGGGACCACTAGAGAACCTTGCTGACCACCTTGCTGACCCTGTCAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTCCCCGGGAAGTGA

Protein sequence

>MsG0680030759.01.T01

MATSTMALSSSTMVGKAIKLSPSTPDLGMGRITMRKTTTKKNVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNSVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLSDDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*