AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030757.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030757.01.T01 MTR_6g011890 96.981 265 8 0 1 265 1 265 0.0 523
MsG0680030757.01.T01 MTR_6g012080 92.453 265 20 0 1 265 1 265 0.0 509
MsG0680030757.01.T01 MTR_6g011880 95.472 265 12 0 1 265 1 265 0.0 503
MsG0680030757.01.T01 MTR_6g011870 95.472 265 12 0 1 265 1 265 0.0 502
MsG0680030757.01.T01 MTR_6g012110 92.453 265 20 0 1 265 1 265 5.35e-179 493
MsG0680030757.01.T01 MTR_4g094605 89.850 266 26 1 1 265 1 266 1.10e-178 492
MsG0680030757.01.T01 MTR_5g097280 75.281 267 58 3 4 265 2 265 9.04e-148 414
MsG0680030757.01.T01 MTR_6g043600 82.278 237 21 2 29 265 14 229 1.73e-138 389
MsG0680030757.01.T01 MTR_2g081090 77.523 218 47 2 49 264 19 236 5.68e-119 340
MsG0680030757.01.T01 MTR_2g081090 77.523 218 47 2 49 264 46 263 8.98e-119 340
MsG0680030757.01.T01 MTR_6g060175 45.693 267 119 6 8 253 13 274 4.99e-65 204
MsG0680030757.01.T01 MTR_1g026550 45.038 262 131 8 4 253 62 322 8.42e-62 198
MsG0680030757.01.T01 MTR_6g060175 44.195 267 113 7 8 253 13 264 1.52e-58 188
MsG0680030757.01.T01 MTR_5g098785 36.264 273 139 9 6 253 7 269 1.19e-36 131
MsG0680030757.01.T01 MTR_5g098780 35.943 281 135 11 3 253 2 267 1.58e-36 131
MsG0680030757.01.T01 MTR_6g033320 43.005 193 90 6 66 253 56 233 2.43e-36 129
MsG0680030757.01.T01 MTR_8g023790 38.596 228 98 10 52 262 61 263 8.46e-36 129
MsG0680030757.01.T01 MTR_3g101670 38.424 203 93 6 64 249 66 253 3.71e-34 124
MsG0680030757.01.T01 MTR_2g042720 36.726 226 107 9 52 260 60 266 1.00e-31 118
MsG0680030757.01.T01 MTR_3g435460 35.533 197 103 5 65 252 62 243 5.61e-30 113
MsG0680030757.01.T01 MTR_1g026550 47.619 126 62 3 47 168 105 230 1.72e-28 108
MsG0680030757.01.T01 MTR_4g015570 43.293 164 78 7 91 253 132 281 1.39e-27 107
MsG0680030757.01.T01 MTR_3g435460 34.392 189 100 5 73 252 9 182 3.46e-26 101
MsG0680030757.01.T01 MTR_3g070340 44.872 156 65 8 92 243 136 274 2.25e-21 90.9
MsG0680030757.01.T01 MTR_5g098770 55.405 74 32 1 181 253 13 86 3.08e-21 85.9
MsG0680030757.01.T01 MTR_2g008610 32.850 207 89 8 66 242 73 259 1.54e-17 80.1
MsG0680030757.01.T01 MTR_2g436960 50.685 73 29 2 180 252 27 92 8.13e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030757.01.T01 AT1G29930 86.891 267 33 2 1 265 1 267 1.05e-170 472
MsG0680030757.01.T01 AT2G34430 87.640 267 30 3 1 265 1 266 5.58e-170 470
MsG0680030757.01.T01 AT1G29920 86.517 267 34 2 1 265 1 267 6.75e-170 470
MsG0680030757.01.T01 AT1G29910 86.517 267 34 2 1 265 1 267 6.75e-170 470
MsG0680030757.01.T01 AT2G34420 85.768 267 34 3 1 265 1 265 1.48e-166 461
MsG0680030757.01.T01 AT3G27690 77.491 271 50 4 2 265 32 298 3.10e-151 424
MsG0680030757.01.T01 AT3G27690 77.695 269 49 4 4 265 2 266 1.40e-150 421
MsG0680030757.01.T01 AT2G05070 77.985 268 49 5 4 265 2 265 1.54e-150 421
MsG0680030757.01.T01 AT2G05100 76.866 268 52 4 4 265 2 265 2.94e-149 418
MsG0680030757.01.T01 AT2G05100 75.417 240 49 4 4 237 2 237 6.79e-127 363
MsG0680030757.01.T01 AT5G54270 69.057 265 77 5 3 264 2 264 3.41e-119 342
MsG0680030757.01.T01 AT1G76570 47.186 231 112 5 33 253 90 320 1.17e-62 200
MsG0680030757.01.T01 AT4G10340 51.675 209 92 4 49 253 62 265 3.00e-60 192
MsG0680030757.01.T01 AT3G54890 44.041 193 88 6 66 253 55 232 1.43e-37 132
MsG0680030757.01.T01 AT1G61520 41.014 217 93 9 62 253 59 265 3.34e-37 132
MsG0680030757.01.T01 AT1G61520 41.014 217 93 9 62 253 59 265 3.34e-37 132
MsG0680030757.01.T01 AT1G45474 41.969 193 97 5 66 249 56 242 2.15e-36 130
MsG0680030757.01.T01 AT1G45474 41.969 193 97 5 66 249 56 242 2.15e-36 130
MsG0680030757.01.T01 AT3G61470 38.596 228 98 10 52 262 50 252 1.19e-35 128
MsG0680030757.01.T01 AT1G61520 39.614 207 90 9 73 254 15 211 8.93e-34 122
MsG0680030757.01.T01 AT3G47470 40.625 192 100 7 65 252 63 244 4.72e-31 116
MsG0680030757.01.T01 AT1G19150 36.283 226 108 8 52 260 63 269 4.75e-31 116
MsG0680030757.01.T01 AT3G08940 34.686 271 107 12 27 253 35 279 2.70e-28 109
MsG0680030757.01.T01 AT5G01530 44.512 164 76 8 91 253 133 282 3.37e-27 107
MsG0680030757.01.T01 AT3G54890 38.220 191 68 6 66 253 55 198 6.70e-24 96.3
MsG0680030757.01.T01 AT3G54890 40.764 157 74 5 66 218 55 196 8.69e-24 95.9
MsG0680030757.01.T01 AT2G40100 41.935 155 70 7 92 243 135 272 7.62e-23 95.1
MsG0680030757.01.T01 AT1G15820 34.300 207 86 8 66 242 70 256 2.40e-18 82.4
MsG0680030757.01.T01 AT5G28450 52.632 76 28 3 189 262 99 168 5.83e-14 68.6
MsG0680030757.01.T01 AT3G54890 42.353 85 41 2 66 149 55 132 2.83e-11 60.8

Find 109 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAGCATCCTTGCTATT+TGG 0.098078 6:+8686373 MsG0680030757.01.T01:CDS
GTCTCTCTCTTCTTCATCAT+TGG 0.251189 6:+8685930 MsG0680030757.01.T01:CDS
TTTGTTCAAGCTATTGTTAC+TGG 0.254583 6:+8686594 MsG0680030757.01.T01:CDS
GCCCATGCATTGTTGTTAAC+TGG 0.254828 6:-8686657 None:intergenic
GGCTTGCCAAGTTATCTTAA+TGG 0.266805 6:+8686395 MsG0680030757.01.T01:CDS
GTGGGCTATGTTGGGAGCCT+TGG 0.274776 6:+8686221 MsG0680030757.01.T01:CDS
CTCTCTTCTTCATCATTGGT+TGG 0.280485 6:+8685934 MsG0680030757.01.T01:CDS
TCCAGAAGGGACGTTCTTCT+TGG 0.287137 6:-8686028 None:intergenic
GGGTCGTCAGCGAGGCCTAA+TGG 0.324580 6:-8686498 None:intergenic
ACAAAGCATCCTTGCTATTT+GGG 0.328738 6:+8686374 MsG0680030757.01.T01:CDS
TATCTCACTGGTGAATTTCC+TGG 0.333598 6:+8686114 MsG0680030757.01.T01:CDS
TGAGGGTGGGCTTGACTACT+TGG 0.346197 6:+8686329 MsG0680030757.01.T01:CDS
GGTGAATTTCCTGGTGACTA+TGG 0.363361 6:+8686123 MsG0680030757.01.T01:CDS
TGGGCTATGTTGGGAGCCTT+GGG 0.369590 6:+8686222 MsG0680030757.01.T01:CDS
GCTTGCCAAGTTATCTTAAT+GGG 0.373943 6:+8686396 MsG0680030757.01.T01:CDS
TTCTTCATCATTGGTTGGGC+AGG 0.375767 6:+8685939 MsG0680030757.01.T01:CDS
GTCGAGGGTTATCGTATTGC+TGG 0.376706 6:+8686423 MsG0680030757.01.T01:CDS
TCTCTTCTTCATCATTGGTT+GGG 0.384635 6:+8685935 MsG0680030757.01.T01:CDS
AAGTACTTGGGTCCATTCTC+TGG 0.385387 6:+8686078 MsG0680030757.01.T01:CDS
CTTTGTGCATGGACTAGACT+TGG 0.388090 6:-8686357 None:intergenic
TCCCCTTCCACCCAAGACTT+TGG 0.392962 6:+8685973 MsG0680030757.01.T01:CDS
GGTCGTCAGCGAGGCCTAAT+GGG 0.394927 6:-8686497 None:intergenic
ACCAAGAAGAACGTCCCTTC+TGG 0.395010 6:+8686027 MsG0680030757.01.T01:CDS
CTTTCCAGGGGCAAAGTTTG+TGG 0.397939 6:-8686685 None:intergenic
TCACAGCAGGTGGGCTATGT+TGG 0.403101 6:+8686212 MsG0680030757.01.T01:CDS
ATGTGTCTTCCCCGAGCTCT+TGG 0.408051 6:+8686245 MsG0680030757.01.T01:CDS
TTTAACTCTGCAAAAGCCTC+TGG 0.409093 6:-8686519 None:intergenic
CCCAAGTACTTGACACGGTC+TGG 0.412244 6:-8686066 None:intergenic
CCCATGCATTGTTGTTAACT+GGG 0.415433 6:-8686656 None:intergenic
TCCAGACCGTGTCAAGTACT+TGG 0.415714 6:+8686065 MsG0680030757.01.T01:CDS
GCTCGCAATGGTGTCAAATT+CGG 0.416188 6:+8686267 MsG0680030757.01.T01:CDS
TTCTTCCCACTCCAAAGTCT+TGG 0.418354 6:-8685984 None:intergenic
CGGTGAGGCCGTGTGGTTCA+AGG 0.437405 6:+8686287 MsG0680030757.01.T01:CDS
CACAGCAGGTGGGCTATGTT+GGG 0.440493 6:+8686213 MsG0680030757.01.T01:CDS
CCATTGCGAGCCAAGAGCTC+GGG 0.440871 6:-8686255 None:intergenic
TCTTCCCACTCCAAAGTCTT+GGG 0.445773 6:-8685983 None:intergenic
CAGCTCCCATTAAGATAACT+TGG 0.448665 6:-8686401 None:intergenic
GGTGGTAGCTTTGACCCATT+AGG 0.456119 6:+8686483 MsG0680030757.01.T01:CDS
TGTGAATGACCTCTAGTTCA+CGG 0.458736 6:-8686194 None:intergenic
CGTATTGCTGGTGGACCTCT+CGG 0.477663 6:+8686435 MsG0680030757.01.T01:CDS
CCCGAGCTCTTGGCTCGCAA+TGG 0.480396 6:+8686255 MsG0680030757.01.T01:CDS
ACCATTGCGAGCCAAGAGCT+CGG 0.485012 6:-8686256 None:intergenic
AGGGGCAAAGTTTGTGGCAT+AGG 0.488535 6:-8686679 None:intergenic
AATTTCCTGGTGACTATGGT+TGG 0.489803 6:+8686127 MsG0680030757.01.T01:CDS
CAAGCTATTGTTACTGGGAA+AGG 0.491561 6:+8686600 MsG0680030757.01.T01:CDS
ACCCAGTTAACAACAATGCA+TGG 0.495325 6:+8686655 MsG0680030757.01.T01:CDS
TCCAAAGTCTTGGGTGGAAG+GGG 0.496093 6:-8685974 None:intergenic
AATTCACCAGTGAGATAAGA+TGG 0.497319 6:-8686108 None:intergenic
CTCCAAAGTCTTGGGTGGAA+GGG 0.499181 6:-8685975 None:intergenic
AGAAGGGACGTTCTTCTTGG+TGG 0.503793 6:-8686025 None:intergenic
CTCAAATCTTTAGTGAGGGT+GGG 0.514800 6:+8686316 MsG0680030757.01.T01:CDS
GATGGAGCTTCACCAGAGAA+TGG 0.521371 6:-8686090 None:intergenic
GACTATGGTTGGGATACTGC+TGG 0.521378 6:+8686138 MsG0680030757.01.T01:CDS
ACTCCAAAGTCTTGGGTGGA+AGG 0.521517 6:-8685976 None:intergenic
TATCTTAATGGGAGCTGTCG+AGG 0.526516 6:+8686407 MsG0680030757.01.T01:CDS
TTGTTCAAGCTATTGTTACT+GGG 0.528641 6:+8686595 MsG0680030757.01.T01:CDS
GAAGCTCCATCTTATCTCAC+TGG 0.536768 6:+8686102 MsG0680030757.01.T01:CDS
GAGGCCGTGTGGTTCAAGGC+AGG 0.541085 6:+8686291 MsG0680030757.01.T01:CDS
AGCTACCACCTGGGTAGAGT+GGG 0.543872 6:-8686470 None:intergenic
TATGCCACAAACTTTGCCCC+TGG 0.544109 6:+8686681 MsG0680030757.01.T01:CDS
ATTTCCTGGTGACTATGGTT+GGG 0.544993 6:+8686128 MsG0680030757.01.T01:CDS
AGACATTGTTGAAGCAGCCA+TGG 0.546418 6:-8685911 None:intergenic
TGGTCAGCAAGATTCTCTAT+AGG 0.546492 6:-8686624 None:intergenic
ATCTTAATGGGAGCTGTCGA+GGG 0.551338 6:+8686408 MsG0680030757.01.T01:CDS
TCCCACTCCAAAGTCTTGGG+TGG 0.554739 6:-8685980 None:intergenic
TCTCAAATCTTTAGTGAGGG+TGG 0.555153 6:+8686315 MsG0680030757.01.T01:CDS
CCTTCTGGAAGCCCATGGTA+TGG 0.562749 6:+8686042 MsG0680030757.01.T01:CDS
ACACGGTCTGGACCATACCA+TGG 0.565732 6:-8686054 None:intergenic
TCCACCCAAGACTTTGGAGT+GGG 0.566644 6:+8685979 MsG0680030757.01.T01:CDS
AACTAGAGGTCATTCACAGC+AGG 0.566706 6:+8686199 MsG0680030757.01.T01:CDS
AAGCTACCACCTGGGTAGAG+TGG 0.568491 6:-8686471 None:intergenic
TGTTGTTAACTGGGTCCGCA+AGG 0.569379 6:-8686647 None:intergenic
TAGAGGTCATTCACAGCAGG+TGG 0.570290 6:+8686202 MsG0680030757.01.T01:CDS
GAGGGTTATCGTATTGCTGG+TGG 0.577740 6:+8686426 MsG0680030757.01.T01:CDS
CCATACCATGGGCTTCCAGA+AGG 0.582962 6:-8686042 None:intergenic
AATGGGTCAAAGCTACCACC+TGG 0.583802 6:-8686480 None:intergenic
TTAACTCTGCAAAAGCCTCT+GGG 0.584718 6:-8686518 None:intergenic
TAGCAAGGATGCTTTGTGCA+TGG 0.585942 6:-8686368 None:intergenic
AAGGTGAAAGAACTCAAGAA+TGG 0.587179 6:+8686540 MsG0680030757.01.T01:CDS
CACGGTCTGGACCATACCAT+GGG 0.588277 6:-8686053 None:intergenic
TGGTGGACCTCTCGGTGAGG+TGG 0.589632 6:+8686443 MsG0680030757.01.T01:CDS
CCAGACCGTGTCAAGTACTT+GGG 0.589728 6:+8686066 MsG0680030757.01.T01:CDS
CCCAGTTAACAACAATGCAT+GGG 0.594599 6:+8686656 MsG0680030757.01.T01:CDS
CTTGGCAAGCCCAAATAGCA+AGG 0.601875 6:-8686383 None:intergenic
CATACCATGGGCTTCCAGAA+GGG 0.602558 6:-8686041 None:intergenic
CATTGCGAGCCAAGAGCTCG+GGG 0.614226 6:-8686254 None:intergenic
TGTTAACTGGGTCCGCAAGG+TGG 0.616453 6:-8686644 None:intergenic
TTTGTGCATGGACTAGACTT+GGG 0.616758 6:-8686356 None:intergenic
AGGATCTCAAATCTTTAGTG+AGG 0.620360 6:+8686311 MsG0680030757.01.T01:CDS
GAGGGTGGGCTTGACTACTT+GGG 0.623436 6:+8686330 MsG0680030757.01.T01:CDS
AAGCCTCTGGGTCGTCAGCG+AGG 0.627327 6:-8686506 None:intergenic
GTATCCCAACCATAGTCACC+AGG 0.627588 6:-8686132 None:intergenic
TCAAATTCGGTGAGGCCGTG+TGG 0.635138 6:+8686280 MsG0680030757.01.T01:CDS
ACGTCCCTTCTGGAAGCCCA+TGG 0.638490 6:+8686037 MsG0680030757.01.T01:CDS
GGATCTCAAATCTTTAGTGA+GGG 0.655185 6:+8686312 MsG0680030757.01.T01:CDS
TGCTGGTGGACCTCTCGGTG+AGG 0.655216 6:+8686440 MsG0680030757.01.T01:CDS
TTCCACCCAAGACTTTGGAG+TGG 0.655299 6:+8685978 MsG0680030757.01.T01:CDS
CTCGGGGAAGACACATCCCA+AGG 0.656242 6:-8686238 None:intergenic
GAATCTTGCTGACCACCTTG+CGG 0.669848 6:+8686632 MsG0680030757.01.T01:CDS
AGATCCTGCCTTGAACCACA+CGG 0.672978 6:-8686295 None:intergenic
GTGGTCGACCCACTCTACCC+AGG 0.674935 6:+8686462 MsG0680030757.01.T01:CDS
AGAGGTCATTCACAGCAGGT+GGG 0.676877 6:+8686203 MsG0680030757.01.T01:CDS
GGGTCGACCACCTCACCGAG+AGG 0.690074 6:-8686450 None:intergenic
AGGCCTCGCTGACGACCCAG+AGG 0.694133 6:+8686503 MsG0680030757.01.T01:CDS
CAATGGTGTCAAATTCGGTG+AGG 0.696354 6:+8686272 MsG0680030757.01.T01:CDS
ATGGGTCAAAGCTACCACCT+GGG 0.710279 6:-8686479 None:intergenic
ATGGACCCAAGTACTTGACA+CGG 0.711188 6:-8686071 None:intergenic
GTCGACCCACTCTACCCAGG+TGG 0.715669 6:+8686465 MsG0680030757.01.T01:CDS
GAGTGGGAAGAATCTCCATG+AGG 0.760427 6:+8685995 MsG0680030757.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGCTATGTTTTCTATGTT+TGG + Chr6:8686567-8686586 MsG0680030757.01.T01:CDS 25.0%
TTGTTCAAGCTATTGTTACT+GGG + Chr6:8686595-8686614 MsG0680030757.01.T01:CDS 30.0%
TTTGTTCAAGCTATTGTTAC+TGG + Chr6:8686594-8686613 MsG0680030757.01.T01:CDS 30.0%
AAGGTGAAAGAACTCAAGAA+TGG + Chr6:8686540-8686559 MsG0680030757.01.T01:CDS 35.0%
AATTCACCAGTGAGATAAGA+TGG - Chr6:8686111-8686130 None:intergenic 35.0%
AGGATCTCAAATCTTTAGTG+AGG + Chr6:8686311-8686330 MsG0680030757.01.T01:CDS 35.0%
GCTTGCCAAGTTATCTTAAT+GGG + Chr6:8686396-8686415 MsG0680030757.01.T01:CDS 35.0%
GGATCTCAAATCTTTAGTGA+GGG + Chr6:8686312-8686331 MsG0680030757.01.T01:CDS 35.0%
! TCTCTTCTTCATCATTGGTT+GGG + Chr6:8685935-8685954 MsG0680030757.01.T01:CDS 35.0%
!! ACAAAGCATCCTTGCTATTT+GGG + Chr6:8686374-8686393 MsG0680030757.01.T01:CDS 35.0%
!! TAGTTCACGGTTTTTAGAGA+AGG - Chr6:8686184-8686203 None:intergenic 35.0%
AATTTCCTGGTGACTATGGT+TGG + Chr6:8686127-8686146 MsG0680030757.01.T01:CDS 40.0%
ACCCAGTTAACAACAATGCA+TGG + Chr6:8686655-8686674 MsG0680030757.01.T01:CDS 40.0%
ATTTCCTGGTGACTATGGTT+GGG + Chr6:8686128-8686147 MsG0680030757.01.T01:CDS 40.0%
CAAGCTATTGTTACTGGGAA+AGG + Chr6:8686600-8686619 MsG0680030757.01.T01:CDS 40.0%
CAGCTCCCATTAAGATAACT+TGG - Chr6:8686404-8686423 None:intergenic 40.0%
CCCAGTTAACAACAATGCAT+GGG + Chr6:8686656-8686675 MsG0680030757.01.T01:CDS 40.0%
CTCAAATCTTTAGTGAGGGT+GGG + Chr6:8686316-8686335 MsG0680030757.01.T01:CDS 40.0%
CTCTCTTCTTCATCATTGGT+TGG + Chr6:8685934-8685953 MsG0680030757.01.T01:CDS 40.0%
GGCTTGCCAAGTTATCTTAA+TGG + Chr6:8686395-8686414 MsG0680030757.01.T01:CDS 40.0%
GTCTCTCTCTTCTTCATCAT+TGG + Chr6:8685930-8685949 MsG0680030757.01.T01:CDS 40.0%
TATCTCACTGGTGAATTTCC+TGG + Chr6:8686114-8686133 MsG0680030757.01.T01:CDS 40.0%
TCTCAAATCTTTAGTGAGGG+TGG + Chr6:8686315-8686334 MsG0680030757.01.T01:CDS 40.0%
TGGTCAGCAAGATTCTCTAT+AGG - Chr6:8686627-8686646 None:intergenic 40.0%
TTAACTCTGCAAAAGCCTCT+GGG - Chr6:8686521-8686540 None:intergenic 40.0%
TTTAACTCTGCAAAAGCCTC+TGG - Chr6:8686522-8686541 None:intergenic 40.0%
! AGAGGCTTTTGCAGAGTTAA+AGG + Chr6:8686521-8686540 MsG0680030757.01.T01:CDS 40.0%
! CCCATGCATTGTTGTTAACT+GGG - Chr6:8686659-8686678 None:intergenic 40.0%
! CTCTAAAAACCGTGAACTAG+AGG + Chr6:8686185-8686204 MsG0680030757.01.T01:CDS 40.0%
! TGTGAATGACCTCTAGTTCA+CGG - Chr6:8686197-8686216 None:intergenic 40.0%
!! CACAAAGCATCCTTGCTATT+TGG + Chr6:8686373-8686392 MsG0680030757.01.T01:CDS 40.0%
!! TTTGTGCATGGACTAGACTT+GGG - Chr6:8686359-8686378 None:intergenic 40.0%
AACTAGAGGTCATTCACAGC+AGG + Chr6:8686199-8686218 MsG0680030757.01.T01:CDS 45.0%
AAGTACTTGGGTCCATTCTC+TGG + Chr6:8686078-8686097 MsG0680030757.01.T01:CDS 45.0%
ATCTTAATGGGAGCTGTCGA+GGG + Chr6:8686408-8686427 MsG0680030757.01.T01:CDS 45.0%
ATGGACCCAAGTACTTGACA+CGG - Chr6:8686074-8686093 None:intergenic 45.0%
GAAGCTCCATCTTATCTCAC+TGG + Chr6:8686102-8686121 MsG0680030757.01.T01:CDS 45.0%
GGTGAATTTCCTGGTGACTA+TGG + Chr6:8686123-8686142 MsG0680030757.01.T01:CDS 45.0%
TAGCAAGGATGCTTTGTGCA+TGG - Chr6:8686371-8686390 None:intergenic 45.0%
TATCTTAATGGGAGCTGTCG+AGG + Chr6:8686407-8686426 MsG0680030757.01.T01:CDS 45.0%
TCTTCCCACTCCAAAGTCTT+GGG - Chr6:8685986-8686005 None:intergenic 45.0%
TTCTTCCCACTCCAAAGTCT+TGG - Chr6:8685987-8686006 None:intergenic 45.0%
! CAATGGTGTCAAATTCGGTG+AGG + Chr6:8686272-8686291 MsG0680030757.01.T01:CDS 45.0%
! GCCCATGCATTGTTGTTAAC+TGG - Chr6:8686660-8686679 None:intergenic 45.0%
! GCTCGCAATGGTGTCAAATT+CGG + Chr6:8686267-8686286 MsG0680030757.01.T01:CDS 45.0%
! TTCTTCATCATTGGTTGGGC+AGG + Chr6:8685939-8685958 MsG0680030757.01.T01:CDS 45.0%
!! CGGTTTTTAGAGAAGGTCTC+TGG - Chr6:8686177-8686196 None:intergenic 45.0%
!! CTTTGTGCATGGACTAGACT+TGG - Chr6:8686360-8686379 None:intergenic 45.0%
AATGGGTCAAAGCTACCACC+TGG - Chr6:8686483-8686502 None:intergenic 50.0%
ACCAAGAAGAACGTCCCTTC+TGG + Chr6:8686027-8686046 MsG0680030757.01.T01:CDS 50.0%
ACTCCAAAGTCTTGGGTGGA+AGG - Chr6:8685979-8685998 None:intergenic 50.0%
AGAAGGGACGTTCTTCTTGG+TGG - Chr6:8686028-8686047 None:intergenic 50.0%
AGAGGTCATTCACAGCAGGT+GGG + Chr6:8686203-8686222 MsG0680030757.01.T01:CDS 50.0%
AGATCCTGCCTTGAACCACA+CGG - Chr6:8686298-8686317 None:intergenic 50.0%
AGGGGCAAAGTTTGTGGCAT+AGG - Chr6:8686682-8686701 None:intergenic 50.0%
ATGGGTCAAAGCTACCACCT+GGG - Chr6:8686482-8686501 None:intergenic 50.0%
CATACCATGGGCTTCCAGAA+GGG - Chr6:8686044-8686063 None:intergenic 50.0%
CCAGACCGTGTCAAGTACTT+GGG + Chr6:8686066-8686085 MsG0680030757.01.T01:CDS 50.0%
CTCCAAAGTCTTGGGTGGAA+GGG - Chr6:8685978-8685997 None:intergenic 50.0%
CTTGGCAAGCCCAAATAGCA+AGG - Chr6:8686386-8686405 None:intergenic 50.0%
CTTTCCAGGGGCAAAGTTTG+TGG - Chr6:8686688-8686707 None:intergenic 50.0%
GAATCTTGCTGACCACCTTG+CGG + Chr6:8686632-8686651 MsG0680030757.01.T01:CDS 50.0%
GACTATGGTTGGGATACTGC+TGG + Chr6:8686138-8686157 MsG0680030757.01.T01:CDS 50.0%
GAGGGTTATCGTATTGCTGG+TGG + Chr6:8686426-8686445 MsG0680030757.01.T01:CDS 50.0%
GAGTGGGAAGAATCTCCATG+AGG + Chr6:8685995-8686014 MsG0680030757.01.T01:CDS 50.0%
GATGGAGCTTCACCAGAGAA+TGG - Chr6:8686093-8686112 None:intergenic 50.0%
GTATCCCAACCATAGTCACC+AGG - Chr6:8686135-8686154 None:intergenic 50.0%
GTCGAGGGTTATCGTATTGC+TGG + Chr6:8686423-8686442 MsG0680030757.01.T01:CDS 50.0%
TAGAGGTCATTCACAGCAGG+TGG + Chr6:8686202-8686221 MsG0680030757.01.T01:CDS 50.0%
TATGCCACAAACTTTGCCCC+TGG + Chr6:8686681-8686700 MsG0680030757.01.T01:CDS 50.0%
TCCAAAGTCTTGGGTGGAAG+GGG - Chr6:8685977-8685996 None:intergenic 50.0%
TCCAGAAGGGACGTTCTTCT+TGG - Chr6:8686031-8686050 None:intergenic 50.0%
TCCAGACCGTGTCAAGTACT+TGG + Chr6:8686065-8686084 MsG0680030757.01.T01:CDS 50.0%
TGTTGTTAACTGGGTCCGCA+AGG - Chr6:8686650-8686669 None:intergenic 50.0%
! TTCCACCCAAGACTTTGGAG+TGG + Chr6:8685978-8685997 MsG0680030757.01.T01:CDS 50.0%
!! CTTGGTGGCTGTTTTCCTCA+TGG - Chr6:8686013-8686032 None:intergenic 50.0%
!! GGTGGTAGCTTTGACCCATT+AGG + Chr6:8686483-8686502 MsG0680030757.01.T01:CDS 50.0%
!! TCCACCCAAGACTTTGGAGT+GGG + Chr6:8685979-8685998 MsG0680030757.01.T01:CDS 50.0%
AAGCTACCACCTGGGTAGAG+TGG - Chr6:8686474-8686493 None:intergenic 55.0%
ACACGGTCTGGACCATACCA+TGG - Chr6:8686057-8686076 None:intergenic 55.0%
ACCATTGCGAGCCAAGAGCT+CGG - Chr6:8686259-8686278 None:intergenic 55.0%
AGCTACCACCTGGGTAGAGT+GGG - Chr6:8686473-8686492 None:intergenic 55.0%
ATGTGTCTTCCCCGAGCTCT+TGG + Chr6:8686245-8686264 MsG0680030757.01.T01:CDS 55.0%
CACGGTCTGGACCATACCAT+GGG - Chr6:8686056-8686075 None:intergenic 55.0%
CCATACCATGGGCTTCCAGA+AGG - Chr6:8686045-8686064 None:intergenic 55.0%
CCCAAGTACTTGACACGGTC+TGG - Chr6:8686069-8686088 None:intergenic 55.0%
TCCCACTCCAAAGTCTTGGG+TGG - Chr6:8685983-8686002 None:intergenic 55.0%
TCCCCTTCCACCCAAGACTT+TGG + Chr6:8685973-8685992 MsG0680030757.01.T01:CDS 55.0%
TGGGCTATGTTGGGAGCCTT+GGG + Chr6:8686222-8686241 MsG0680030757.01.T01:CDS 55.0%
TGTTAACTGGGTCCGCAAGG+TGG - Chr6:8686647-8686666 None:intergenic 55.0%
! CCTTCTGGAAGCCCATGGTA+TGG + Chr6:8686042-8686061 MsG0680030757.01.T01:CDS 55.0%
! CGTATTGCTGGTGGACCTCT+CGG + Chr6:8686435-8686454 MsG0680030757.01.T01:CDS 55.0%
! GAGGGTGGGCTTGACTACTT+GGG + Chr6:8686330-8686349 MsG0680030757.01.T01:CDS 55.0%
! TCAAATTCGGTGAGGCCGTG+TGG + Chr6:8686280-8686299 MsG0680030757.01.T01:CDS 55.0%
! TGAGGGTGGGCTTGACTACT+TGG + Chr6:8686329-8686348 MsG0680030757.01.T01:CDS 55.0%
!! CACAGCAGGTGGGCTATGTT+GGG + Chr6:8686213-8686232 MsG0680030757.01.T01:CDS 55.0%
!! TCACAGCAGGTGGGCTATGT+TGG + Chr6:8686212-8686231 MsG0680030757.01.T01:CDS 55.0%
CATTGCGAGCCAAGAGCTCG+GGG - Chr6:8686257-8686276 None:intergenic 60.0%
CCATTGCGAGCCAAGAGCTC+GGG - Chr6:8686258-8686277 None:intergenic 60.0%
CTCGGGGAAGACACATCCCA+AGG - Chr6:8686241-8686260 None:intergenic 60.0%
GGTCGTCAGCGAGGCCTAAT+GGG - Chr6:8686500-8686519 None:intergenic 60.0%
! ACGTCCCTTCTGGAAGCCCA+TGG + Chr6:8686037-8686056 MsG0680030757.01.T01:CDS 60.0%
! GTGGGCTATGTTGGGAGCCT+TGG + Chr6:8686221-8686240 MsG0680030757.01.T01:CDS 60.0%
AAGCCTCTGGGTCGTCAGCG+AGG - Chr6:8686509-8686528 None:intergenic 65.0%
CGGTGAGGCCGTGTGGTTCA+AGG + Chr6:8686287-8686306 MsG0680030757.01.T01:CDS 65.0%
GAGGCCGTGTGGTTCAAGGC+AGG + Chr6:8686291-8686310 MsG0680030757.01.T01:CDS 65.0%
GGGTCGTCAGCGAGGCCTAA+TGG - Chr6:8686501-8686520 None:intergenic 65.0%
GTCGACCCACTCTACCCAGG+TGG + Chr6:8686465-8686484 MsG0680030757.01.T01:CDS 65.0%
GTGGTCGACCCACTCTACCC+AGG + Chr6:8686462-8686481 MsG0680030757.01.T01:CDS 65.0%
! CCCGAGCTCTTGGCTCGCAA+TGG + Chr6:8686255-8686274 MsG0680030757.01.T01:CDS 65.0%
! TGCTGGTGGACCTCTCGGTG+AGG + Chr6:8686440-8686459 MsG0680030757.01.T01:CDS 65.0%
! TGGTGGACCTCTCGGTGAGG+TGG + Chr6:8686443-8686462 MsG0680030757.01.T01:CDS 65.0%
AGGCCTCGCTGACGACCCAG+AGG + Chr6:8686503-8686522 MsG0680030757.01.T01:CDS 70.0%
GGGTCGACCACCTCACCGAG+AGG - Chr6:8686453-8686472 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 8685913 8686710 8685913 ID=MsG0680030757.01;Name=MsG0680030757.01
Chr6 mRNA 8685913 8686710 8685913 ID=MsG0680030757.01.T01;Parent=MsG0680030757.01;Name=MsG0680030757.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|265
Chr6 exon 8685913 8686710 8685913 ID=MsG0680030757.01.T01:exon:7206;Parent=MsG0680030757.01.T01
Chr6 CDS 8685913 8686710 8685913 ID=MsG0680030757.01.T01:cds;Parent=MsG0680030757.01.T01
Gene Sequence

>MsG0680030757.01.T01

ATGGCTGCTTCAACAATGTCTCTCTCTTCTTCATCATTGGTTGGGCAGGCAATCAAGCTTTCCCCTTCCACCCAAGACTTTGGAGTGGGAAGAATCTCCATGAGGAAAACAGCCACCAAGAAGAACGTCCCTTCTGGAAGCCCATGGTATGGTCCAGACCGTGTCAAGTACTTGGGTCCATTCTCTGGTGAAGCTCCATCTTATCTCACTGGTGAATTTCCTGGTGACTATGGTTGGGATACTGCTGGACTTTCTGCTGATCCAGAGACCTTCTCTAAAAACCGTGAACTAGAGGTCATTCACAGCAGGTGGGCTATGTTGGGAGCCTTGGGATGTGTCTTCCCCGAGCTCTTGGCTCGCAATGGTGTCAAATTCGGTGAGGCCGTGTGGTTCAAGGCAGGATCTCAAATCTTTAGTGAGGGTGGGCTTGACTACTTGGGTAACCCAAGTCTAGTCCATGCACAAAGCATCCTTGCTATTTGGGCTTGCCAAGTTATCTTAATGGGAGCTGTCGAGGGTTATCGTATTGCTGGTGGACCTCTCGGTGAGGTGGTCGACCCACTCTACCCAGGTGGTAGCTTTGACCCATTAGGCCTCGCTGACGACCCAGAGGCTTTTGCAGAGTTAAAGGTGAAAGAACTCAAGAATGGTAGATTAGCTATGTTTTCTATGTTTGGATTCTTTGTTCAAGCTATTGTTACTGGGAAAGGACCTATAGAGAATCTTGCTGACCACCTTGCGGACCCAGTTAACAACAATGCATGGGCCTATGCCACAAACTTTGCCCCTGGAAAGTGA

Protein sequence

>MsG0680030757.01.T01

MAASTMSLSSSSLVGQAIKLSPSTQDFGVGRISMRKTATKKNVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK*