AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030756.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030756.01.T01 MTR_6g011880 98.491 265 4 0 1 265 1 265 0.0 530
MsG0680030756.01.T01 MTR_6g011870 98.491 265 4 0 1 265 1 265 0.0 530
MsG0680030756.01.T01 MTR_6g012080 92.453 265 20 0 1 265 1 265 0.0 506
MsG0680030756.01.T01 MTR_6g011890 95.094 265 13 0 1 265 1 265 0.0 504
MsG0680030756.01.T01 MTR_6g012110 93.585 265 17 0 1 265 1 265 1.09e-179 494
MsG0680030756.01.T01 MTR_4g094605 90.226 266 25 1 1 265 1 266 2.94e-178 491
MsG0680030756.01.T01 MTR_5g097280 76.404 267 55 3 4 265 2 265 9.06e-149 416
MsG0680030756.01.T01 MTR_6g043600 78.113 265 22 3 1 265 1 229 3.24e-137 386
MsG0680030756.01.T01 MTR_2g081090 67.557 262 70 4 8 264 12 263 8.18e-120 343
MsG0680030756.01.T01 MTR_2g081090 77.523 218 47 2 49 264 19 236 6.55e-119 340
MsG0680030756.01.T01 MTR_6g060175 53.589 209 88 4 49 253 71 274 4.48e-65 205
MsG0680030756.01.T01 MTR_1g026550 47.718 241 114 7 24 253 83 322 3.17e-61 196
MsG0680030756.01.T01 MTR_6g060175 51.675 209 82 5 49 253 71 264 1.49e-58 188
MsG0680030756.01.T01 MTR_8g023790 36.531 271 120 13 9 262 28 263 7.33e-38 134
MsG0680030756.01.T01 MTR_5g098785 36.364 275 140 9 4 253 5 269 1.12e-37 134
MsG0680030756.01.T01 MTR_6g033320 43.005 193 90 6 66 253 56 233 7.69e-37 130
MsG0680030756.01.T01 MTR_5g098780 35.897 273 138 10 6 253 7 267 1.66e-36 130
MsG0680030756.01.T01 MTR_3g101670 38.916 203 92 6 64 249 66 253 9.47e-35 126
MsG0680030756.01.T01 MTR_2g042720 37.168 226 106 9 52 260 60 266 1.25e-32 120
MsG0680030756.01.T01 MTR_3g435460 36.041 197 102 5 65 252 62 243 1.23e-30 115
MsG0680030756.01.T01 MTR_4g015570 36.325 234 91 9 64 253 62 281 2.52e-28 109
MsG0680030756.01.T01 MTR_1g026550 42.953 149 80 4 24 168 83 230 8.23e-28 107
MsG0680030756.01.T01 MTR_3g435460 34.921 189 99 5 73 252 9 182 6.54e-27 103
MsG0680030756.01.T01 MTR_3g070340 45.161 155 64 8 93 243 137 274 1.07e-21 92.0
MsG0680030756.01.T01 MTR_5g098770 55.405 74 32 1 181 253 13 86 1.90e-21 86.3
MsG0680030756.01.T01 MTR_2g008610 32.850 207 89 8 66 242 73 259 4.78e-17 79.0
MsG0680030756.01.T01 MTR_2g436960 50.685 73 29 2 180 252 27 92 8.22e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030756.01.T01 AT1G29920 88.390 267 29 2 1 265 1 267 2.71e-173 478
MsG0680030756.01.T01 AT1G29910 88.390 267 29 2 1 265 1 267 2.71e-173 478
MsG0680030756.01.T01 AT1G29930 88.015 267 30 2 1 265 1 267 2.11e-172 476
MsG0680030756.01.T01 AT2G34430 86.517 267 33 3 1 265 1 266 1.82e-168 466
MsG0680030756.01.T01 AT2G34420 86.891 267 31 3 1 265 1 265 2.47e-168 466
MsG0680030756.01.T01 AT2G05070 80.224 268 43 5 4 265 2 265 1.34e-153 429
MsG0680030756.01.T01 AT2G05100 79.478 268 45 5 4 265 2 265 4.28e-152 425
MsG0680030756.01.T01 AT3G27690 77.574 272 48 4 2 265 32 298 8.78e-152 425
MsG0680030756.01.T01 AT3G27690 77.778 270 47 4 4 265 2 266 4.15e-151 422
MsG0680030756.01.T01 AT2G05100 78.333 240 42 5 4 237 2 237 6.00e-130 371
MsG0680030756.01.T01 AT5G54270 67.658 269 73 6 1 264 5 264 1.13e-119 343
MsG0680030756.01.T01 AT1G76570 47.598 229 110 5 35 253 92 320 5.06e-62 198
MsG0680030756.01.T01 AT4G10340 52.153 209 91 4 49 253 62 265 2.69e-61 195
MsG0680030756.01.T01 AT3G54890 44.041 193 88 6 66 253 55 232 5.01e-38 134
MsG0680030756.01.T01 AT1G45474 39.035 228 121 7 32 249 23 242 1.44e-37 133
MsG0680030756.01.T01 AT1G45474 39.035 228 121 7 32 249 23 242 1.44e-37 133
MsG0680030756.01.T01 AT1G61520 41.014 217 93 9 62 253 59 265 1.57e-37 133
MsG0680030756.01.T01 AT1G61520 41.014 217 93 9 62 253 59 265 1.57e-37 133
MsG0680030756.01.T01 AT3G61470 39.035 228 97 10 52 262 50 252 1.57e-36 130
MsG0680030756.01.T01 AT1G61520 39.614 207 90 9 73 254 15 211 3.61e-34 123
MsG0680030756.01.T01 AT1G19150 36.283 226 108 8 52 260 63 269 1.84e-31 117
MsG0680030756.01.T01 AT3G47470 40.625 192 100 7 65 252 63 244 3.37e-31 116
MsG0680030756.01.T01 AT3G08940 35.769 260 105 12 39 253 37 279 3.57e-29 112
MsG0680030756.01.T01 AT5G01530 37.339 233 88 10 65 253 64 282 6.00e-28 108
MsG0680030756.01.T01 AT3G54890 40.764 157 74 5 66 218 55 196 3.47e-24 97.1
MsG0680030756.01.T01 AT3G54890 37.368 190 71 6 66 253 55 198 6.49e-24 96.3
MsG0680030756.01.T01 AT2G40100 42.208 154 69 7 93 243 136 272 1.88e-23 96.7
MsG0680030756.01.T01 AT1G15820 33.333 207 88 7 66 242 70 256 5.23e-18 81.6
MsG0680030756.01.T01 AT5G28450 52.632 76 28 3 189 262 99 168 5.38e-14 68.6
MsG0680030756.01.T01 AT3G54890 42.353 85 41 2 66 149 55 132 4.17e-11 60.5

Find 111 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGACCGTGTAAAGTATT+TGG 0.195749 6:+8682870 MsG0680030756.01.T01:CDS
CACAAAGCATCCTTGCTATA+TGG 0.212556 6:+8683178 MsG0680030756.01.T01:CDS
GGCTGTCCAAGTTATCTTAA+TGG 0.263865 6:+8683200 MsG0680030756.01.T01:CDS
TTGGCTATGTTCTCTATGTT+TGG 0.284149 6:+8683372 MsG0680030756.01.T01:CDS
GCCCAAGCATTGTTGTTAAC+TGG 0.297738 6:-8683462 None:intergenic
GTTCTCGATGGGTCCCTTTC+CGG 0.308348 6:-8683418 None:intergenic
ATGGGCTATGTTGGGTGCCT+TGG 0.311551 6:+8683026 MsG0680030756.01.T01:CDS
CTCTCTTCTTCATCATTTGT+AGG 0.314621 6:+8682739 MsG0680030756.01.T01:CDS
CCCCACCCACCCAAGACATT+GGG 0.337302 6:+8682779 MsG0680030756.01.T01:CDS
TCCAGACGGAGCAGACTTCT+TGG 0.338477 6:-8682833 None:intergenic
CCCAAATACTTTACACGGTC+TGG 0.344465 6:-8682871 None:intergenic
TGAGGGTGGGCTTGACTACT+TGG 0.346197 6:+8683134 MsG0680030756.01.T01:CDS
TCGAGGTCATCCACAGTAGA+TGG 0.351194 6:+8683007 MsG0680030756.01.T01:CDS
TCTCGCAATGGTGTCAAATT+CGG 0.351371 6:+8683072 MsG0680030756.01.T01:CDS
CTCTTCCCACCCCAATGTCT+TGG 0.353075 6:-8682789 None:intergenic
AGGTGGCAGCTTTGACCCCT+TGG 0.362938 6:+8683287 MsG0680030756.01.T01:CDS
CCAGACCGTGTAAAGTATTT+GGG 0.373022 6:+8682871 MsG0680030756.01.T01:CDS
CCCCAATGTCTTGGGTGGGT+GGG 0.374579 6:-8682780 None:intergenic
CTTTGTGCATGGACTAGACT+TGG 0.388090 6:-8683162 None:intergenic
ACCCCAATGTCTTGGGTGGG+TGG 0.394012 6:-8682781 None:intergenic
TGGGCTATGTTGGGTGCCTT+GGG 0.394640 6:+8683027 MsG0680030756.01.T01:CDS
GTGGAGGGTTACCGTATTGC+TGG 0.394741 6:+8683228 MsG0680030756.01.T01:CDS
TCTTCCCACCCCAATGTCTT+GGG 0.402736 6:-8682788 None:intergenic
GGTGGCAGCTTTGACCCCTT+GGG 0.407134 6:+8683288 MsG0680030756.01.T01:CDS
AAGTATTTGGGCCCATTCTC+CGG 0.413788 6:+8682883 MsG0680030756.01.T01:CDS
CCCAATGTCTTGGGTGGGTG+GGG 0.417787 6:-8682779 None:intergenic
ATCCAGTTAACAACAATGCT+TGG 0.417976 6:+8683460 MsG0680030756.01.T01:CDS
ACCAAGAAGTCTGCTCCGTC+TGG 0.421450 6:+8682832 MsG0680030756.01.T01:CDS
GGGATCTTCGGCAAGGCCCA+AGG 0.428917 6:-8683304 None:intergenic
TCAAATTCGGCGAGGCTGTA+TGG 0.429918 6:+8683085 MsG0680030756.01.T01:CDS
CGGCGCCCATTAAGATAACT+TGG 0.431485 6:-8683206 None:intergenic
ATGGGGCTTCACCGGAGAAT+GGG 0.432246 6:-8682894 None:intergenic
TACGCCACAAACTTTGCTCC+TGG 0.439316 6:+8683486 MsG0680030756.01.T01:CDS
CAAGCCATTGTGACCGGAAA+GGG 0.439671 6:+8683405 MsG0680030756.01.T01:CDS
ACAAAGCATCCTTGCTATAT+GGG 0.439706 6:+8683179 MsG0680030756.01.T01:CDS
GCTGTCCAAGTTATCTTAAT+GGG 0.444528 6:+8683201 MsG0680030756.01.T01:CDS
CACAGTAGATGGGCTATGTT+GGG 0.449424 6:+8683018 MsG0680030756.01.T01:CDS
TGCAAAAGCCTCGGGATCTT+CGG 0.455489 6:-8683316 None:intergenic
TCTCTTCTTCATCATTTGTA+GGG 0.457836 6:+8682740 MsG0680030756.01.T01:CDS
TTCTTCATCATTTGTAGGGA+AGG 0.457909 6:+8682744 MsG0680030756.01.T01:CDS
TGTCTTGGGTGGGTGGGGAA+AGG 0.460746 6:-8682774 None:intergenic
TCCAGTTAACAACAATGCTT+GGG 0.462972 6:+8683461 MsG0680030756.01.T01:CDS
TTCGTTCAAGCCATTGTGAC+CGG 0.464946 6:+8683399 MsG0680030756.01.T01:CDS
CCACAGTAGATGGGCTATGT+TGG 0.471821 6:+8683017 MsG0680030756.01.T01:CDS
AATTCACCAGTGAGGTAGGA+TGG 0.475235 6:-8682913 None:intergenic
TCCCCACCCACCCAAGACAT+TGG 0.478674 6:+8682778 MsG0680030756.01.T01:CDS
CGTATTGCTGGTGGACCTCT+AGG 0.478692 6:+8683240 MsG0680030756.01.T01:CDS
GGATCTTCGGCAAGGCCCAA+GGG 0.479901 6:-8683303 None:intergenic
GATGGGGCTTCACCGGAGAA+TGG 0.481113 6:-8682895 None:intergenic
CGGCGAGGCTGTATGGTTCA+AGG 0.482570 6:+8683092 MsG0680030756.01.T01:CDS
TTCAACTCTGCAAAAGCCTC+GGG 0.483017 6:-8683324 None:intergenic
TCCCACCCCAATGTCTTGGG+TGG 0.492193 6:-8682785 None:intergenic
GTGTCCCAACCGTAGTCACC+AGG 0.493454 6:-8682937 None:intergenic
CCATTGCGAGATAAGAGCTC+AGG 0.496373 6:-8683060 None:intergenic
CTTCAACTCTGCAAAAGCCT+CGG 0.505325 6:-8683325 None:intergenic
AATTCCCTGGTGACTACGGT+TGG 0.508396 6:+8682932 MsG0680030756.01.T01:CDS
CCCACCCCAATGTCTTGGGT+GGG 0.514405 6:-8682784 None:intergenic
ATTCACCAGTGAGGTAGGAT+GGG 0.514695 6:-8682912 None:intergenic
GAGGTAGGATGGGGCTTCAC+CGG 0.527161 6:-8682902 None:intergenic
ATCTTAATGGGCGCCGTGGA+GGG 0.529068 6:+8683213 MsG0680030756.01.T01:CDS
GTGGTCTGCGAGGTTCTCGA+TGG 0.530131 6:-8683430 None:intergenic
AAGCTGCCACCTGGATAAAG+TGG 0.532303 6:-8683276 None:intergenic
GGTGAATTCCCTGGTGACTA+CGG 0.536323 6:+8682928 MsG0680030756.01.T01:CDS
ATTCCCTGGTGACTACGGTT+GGG 0.544013 6:+8682933 MsG0680030756.01.T01:CDS
AAGGGGTCAAAGCTGCCACC+TGG 0.544590 6:-8683285 None:intergenic
GGGCCTTGCCGAAGATCCCG+AGG 0.544664 6:+8683308 MsG0680030756.01.T01:CDS
TACCTCACTGGTGAATTCCC+TGG 0.552294 6:+8682919 MsG0680030756.01.T01:CDS
TATCTTAATGGGCGCCGTGG+AGG 0.559488 6:+8683212 MsG0680030756.01.T01:CDS
CGAGGTCATCCACAGTAGAT+GGG 0.559618 6:+8683008 MsG0680030756.01.T01:CDS
GAAGCCCCATCCTACCTCAC+TGG 0.567709 6:+8682907 MsG0680030756.01.T01:CDS
GACTACGGTTGGGACACTGC+TGG 0.570758 6:+8682943 MsG0680030756.01.T01:CDS
CCTGAGCTCTTATCTCGCAA+TGG 0.578069 6:+8683060 MsG0680030756.01.T01:CDS
GTAGTCGATCCACTTTATCC+AGG 0.582442 6:+8683267 MsG0680030756.01.T01:CDS
ACACGGTCTGGACCGTACCA+TGG 0.583228 6:-8682859 None:intergenic
TAGCAAGGATGCTTTGTGCA+TGG 0.585942 6:-8683173 None:intergenic
AGGGAATTCACCAGTGAGGT+AGG 0.589346 6:-8682917 None:intergenic
TCAAGCCATTGTGACCGGAA+AGG 0.590431 6:+8683404 MsG0680030756.01.T01:CDS
AGACGGAGCAGACTTCTTGG+TGG 0.593995 6:-8682830 None:intergenic
TTCACCAGTGAGGTAGGATG+GGG 0.596427 6:-8682911 None:intergenic
CTAGAGGTCCACCAGCAATA+CGG 0.596685 6:-8683239 None:intergenic
GGGTCCCTTTCCGGTCACAA+TGG 0.597127 6:-8683409 None:intergenic
AGCAATACGGTAACCCTCCA+CGG 0.600961 6:-8683226 None:intergenic
TGGTCTGCGAGGTTCTCGAT+GGG 0.601711 6:-8683429 None:intergenic
GAGGCTGTATGGTTCAAGGC+AGG 0.603743 6:+8683096 MsG0680030756.01.T01:CDS
CCCACCCAAGACATTGGGGT+GGG 0.604743 6:+8682784 MsG0680030756.01.T01:CDS
GAGGGTTACCGTATTGCTGG+TGG 0.606593 6:+8683231 MsG0680030756.01.T01:CDS
CCGTCTGGAAGTCCATGGTA+CGG 0.607419 6:+8682847 MsG0680030756.01.T01:CDS
CTGCTCCGTCTGGAAGTCCA+TGG 0.608805 6:+8682842 MsG0680030756.01.T01:CDS
AAGCCTCGGGATCTTCGGCA+AGG 0.614309 6:-8683311 None:intergenic
CCCACCCACCCAAGACATTG+GGG 0.615388 6:+8682780 MsG0680030756.01.T01:CDS
TTTGTGCATGGACTAGACTT+GGG 0.616758 6:-8683161 None:intergenic
ACCCACCCAAGACATTGGGG+TGG 0.620934 6:+8682783 MsG0680030756.01.T01:CDS
AGTTATCTTAATGGGCGCCG+TGG 0.622114 6:+8683209 MsG0680030756.01.T01:CDS
GAGGGTGGGCTTGACTACTT+GGG 0.623436 6:+8683135 MsG0680030756.01.T01:CDS
CTTGGACAGCCCATATAGCA+AGG 0.626512 6:-8683188 None:intergenic
TGCTGGTGGACCTCTAGGCG+AGG 0.629147 6:+8683245 MsG0680030756.01.T01:CDS
CATTGCGAGATAAGAGCTCA+GGG 0.632574 6:-8683059 None:intergenic
GATCTTCGGCAAGGCCCAAG+GGG 0.635477 6:-8683302 None:intergenic
ATGGGCCCAAATACTTTACA+CGG 0.638399 6:-8682876 None:intergenic
GTCGATCCACTTTATCCAGG+TGG 0.645626 6:+8683270 MsG0680030756.01.T01:CDS
CCAACATAGCCCATCTACTG+TGG 0.651695 6:-8683017 None:intergenic
CTCAGGGAAGACACATCCCA+AGG 0.667407 6:-8683043 None:intergenic
GGATCGACTACCTCGCCTAG+AGG 0.670435 6:-8683255 None:intergenic
TGTTGTTAACTGGATCAGCA+AGG 0.672175 6:-8683452 None:intergenic
CCGTACCATGGACTTCCAGA+CGG 0.675668 6:-8682847 None:intergenic
GATCAGCAAGGTGGTCTGCG+AGG 0.675947 6:-8683440 None:intergenic
TGTCCCAACCGTAGTCACCA+GGG 0.690709 6:-8682936 None:intergenic
CAATGGTGTCAAATTCGGCG+AGG 0.704270 6:+8683077 MsG0680030756.01.T01:CDS
GGGTGGGAAGAGTCACAATG+AGG 0.706667 6:+8682800 MsG0680030756.01.T01:CDS
TGTTAACTGGATCAGCAAGG+TGG 0.708576 6:-8683449 None:intergenic
CACCAGGGAATTCACCAGTG+AGG 0.725742 6:-8682921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGGTGAAAGAACTAAAAAA+TGG + Chr6:8683345-8683364 MsG0680030756.01.T01:CDS 25.0%
! TGAAAGAACTAAAAAATGGT+AGG + Chr6:8683349-8683368 MsG0680030756.01.T01:CDS 25.0%
AGAACTAAAAAATGGTAGGT+TGG + Chr6:8683353-8683372 MsG0680030756.01.T01:CDS 30.0%
TCTCTTCTTCATCATTTGTA+GGG + Chr6:8682740-8682759 MsG0680030756.01.T01:CDS 30.0%
ATCCAGTTAACAACAATGCT+TGG + Chr6:8683460-8683479 MsG0680030756.01.T01:CDS 35.0%
CTCTCTTCTTCATCATTTGT+AGG + Chr6:8682739-8682758 MsG0680030756.01.T01:CDS 35.0%
GCTGTCCAAGTTATCTTAAT+GGG + Chr6:8683201-8683220 MsG0680030756.01.T01:CDS 35.0%
TCCAGTTAACAACAATGCTT+GGG + Chr6:8683461-8683480 MsG0680030756.01.T01:CDS 35.0%
TTCTTCATCATTTGTAGGGA+AGG + Chr6:8682744-8682763 MsG0680030756.01.T01:CDS 35.0%
TTGGCTATGTTCTCTATGTT+TGG + Chr6:8683372-8683391 MsG0680030756.01.T01:CDS 35.0%
! ACAAAGCATCCTTGCTATAT+GGG + Chr6:8683179-8683198 MsG0680030756.01.T01:CDS 35.0%
!!! AGGATCCCAAATTTTTAGTG+AGG + Chr6:8683116-8683135 MsG0680030756.01.T01:CDS 35.0%
!!! GATTTTTGGCAAATGTCTCT+GGG - Chr6:8682981-8683000 None:intergenic 35.0%
!!! GGATCCCAAATTTTTAGTGA+GGG + Chr6:8683117-8683136 MsG0680030756.01.T01:CDS 35.0%
ATGGGCCCAAATACTTTACA+CGG - Chr6:8682879-8682898 None:intergenic 40.0%
CCCACCCTCACTAAAAATTT+GGG - Chr6:8683124-8683143 None:intergenic 40.0%
GGCTGTCCAAGTTATCTTAA+TGG + Chr6:8683200-8683219 MsG0680030756.01.T01:CDS 40.0%
TGTTGTTAACTGGATCAGCA+AGG - Chr6:8683455-8683474 None:intergenic 40.0%
! CACAAAGCATCCTTGCTATA+TGG + Chr6:8683178-8683197 MsG0680030756.01.T01:CDS 40.0%
! CCAGACCGTGTAAAGTATTT+GGG + Chr6:8682871-8682890 MsG0680030756.01.T01:CDS 40.0%
! TCCAGACCGTGTAAAGTATT+TGG + Chr6:8682870-8682889 MsG0680030756.01.T01:CDS 40.0%
! TCTCGCAATGGTGTCAAATT+CGG + Chr6:8683072-8683091 MsG0680030756.01.T01:CDS 40.0%
! TTTTCCAGGAGCAAAGTTTG+TGG - Chr6:8683493-8683512 None:intergenic 40.0%
!! TTTGTGCATGGACTAGACTT+GGG - Chr6:8683164-8683183 None:intergenic 40.0%
!!! CCCAAATTTTTAGTGAGGGT+GGG + Chr6:8683121-8683140 MsG0680030756.01.T01:CDS 40.0%
!!! CGATTTTTGGCAAATGTCTC+TGG - Chr6:8682982-8683001 None:intergenic 40.0%
!!! TCCCAAATTTTTAGTGAGGG+TGG + Chr6:8683120-8683139 MsG0680030756.01.T01:CDS 40.0%
AAGTATTTGGGCCCATTCTC+CGG + Chr6:8682883-8682902 MsG0680030756.01.T01:CDS 45.0%
AATTCACCAGTGAGGTAGGA+TGG - Chr6:8682916-8682935 None:intergenic 45.0%
ATTCACCAGTGAGGTAGGAT+GGG - Chr6:8682915-8682934 None:intergenic 45.0%
CATTGCGAGATAAGAGCTCA+GGG - Chr6:8683062-8683081 None:intergenic 45.0%
CCCAAATACTTTACACGGTC+TGG - Chr6:8682874-8682893 None:intergenic 45.0%
CTTCAACTCTGCAAAAGCCT+CGG - Chr6:8683328-8683347 None:intergenic 45.0%
GCCCACCCTCACTAAAAATT+TGG - Chr6:8683125-8683144 None:intergenic 45.0%
GTAGTCGATCCACTTTATCC+AGG + Chr6:8683267-8683286 MsG0680030756.01.T01:CDS 45.0%
TAGCAAGGATGCTTTGTGCA+TGG - Chr6:8683176-8683195 None:intergenic 45.0%
TGCCAAAAATCGTGAACTCG+AGG + Chr6:8682990-8683009 MsG0680030756.01.T01:CDS 45.0%
TGTTAACTGGATCAGCAAGG+TGG - Chr6:8683452-8683471 None:intergenic 45.0%
TTCAACTCTGCAAAAGCCTC+GGG - Chr6:8683327-8683346 None:intergenic 45.0%
TTCGTTCAAGCCATTGTGAC+CGG + Chr6:8683399-8683418 MsG0680030756.01.T01:CDS 45.0%
! GACCTCGAGTTCACGATTTT+TGG - Chr6:8682995-8683014 None:intergenic 45.0%
! GCCCAAGCATTGTTGTTAAC+TGG - Chr6:8683465-8683484 None:intergenic 45.0%
!! CACAGTAGATGGGCTATGTT+GGG + Chr6:8683018-8683037 MsG0680030756.01.T01:CDS 45.0%
!! CTTTGTGCATGGACTAGACT+TGG - Chr6:8683165-8683184 None:intergenic 45.0%
AAGCTGCCACCTGGATAAAG+TGG - Chr6:8683279-8683298 None:intergenic 50.0%
AATTCCCTGGTGACTACGGT+TGG + Chr6:8682932-8682951 MsG0680030756.01.T01:CDS 50.0%
AGCAATACGGTAACCCTCCA+CGG - Chr6:8683229-8683248 None:intergenic 50.0%
AGGGAATTCACCAGTGAGGT+AGG - Chr6:8682920-8682939 None:intergenic 50.0%
ATTCCCTGGTGACTACGGTT+GGG + Chr6:8682933-8682952 MsG0680030756.01.T01:CDS 50.0%
CAAGCCATTGTGACCGGAAA+GGG + Chr6:8683405-8683424 MsG0680030756.01.T01:CDS 50.0%
CCAACATAGCCCATCTACTG+TGG - Chr6:8683020-8683039 None:intergenic 50.0%
CCATTGCGAGATAAGAGCTC+AGG - Chr6:8683063-8683082 None:intergenic 50.0%
CCTGAGCTCTTATCTCGCAA+TGG + Chr6:8683060-8683079 MsG0680030756.01.T01:CDS 50.0%
CGAGGTCATCCACAGTAGAT+GGG + Chr6:8683008-8683027 MsG0680030756.01.T01:CDS 50.0%
CGGCGCCCATTAAGATAACT+TGG - Chr6:8683209-8683228 None:intergenic 50.0%
CTAGAGGTCCACCAGCAATA+CGG - Chr6:8683242-8683261 None:intergenic 50.0%
CTTGGACAGCCCATATAGCA+AGG - Chr6:8683191-8683210 None:intergenic 50.0%
GGTGAATTCCCTGGTGACTA+CGG + Chr6:8682928-8682947 MsG0680030756.01.T01:CDS 50.0%
GTCGATCCACTTTATCCAGG+TGG + Chr6:8683270-8683289 MsG0680030756.01.T01:CDS 50.0%
TACCTCACTGGTGAATTCCC+TGG + Chr6:8682919-8682938 MsG0680030756.01.T01:CDS 50.0%
TACGCCACAAACTTTGCTCC+TGG + Chr6:8683486-8683505 MsG0680030756.01.T01:CDS 50.0%
TCAAATTCGGCGAGGCTGTA+TGG + Chr6:8683085-8683104 MsG0680030756.01.T01:CDS 50.0%
TCAAGCCATTGTGACCGGAA+AGG + Chr6:8683404-8683423 MsG0680030756.01.T01:CDS 50.0%
TCGAGGTCATCCACAGTAGA+TGG + Chr6:8683007-8683026 MsG0680030756.01.T01:CDS 50.0%
TCTTCCCACCCCAATGTCTT+GGG - Chr6:8682791-8682810 None:intergenic 50.0%
TGCAAAAGCCTCGGGATCTT+CGG - Chr6:8683319-8683338 None:intergenic 50.0%
TTCACCAGTGAGGTAGGATG+GGG - Chr6:8682914-8682933 None:intergenic 50.0%
! AGTTATCTTAATGGGCGCCG+TGG + Chr6:8683209-8683228 MsG0680030756.01.T01:CDS 50.0%
! CAATGGTGTCAAATTCGGCG+AGG + Chr6:8683077-8683096 MsG0680030756.01.T01:CDS 50.0%
! CGAGGCTTTTGCAGAGTTGA+AGG + Chr6:8683326-8683345 MsG0680030756.01.T01:CDS 50.0%
!! CCACAGTAGATGGGCTATGT+TGG + Chr6:8683017-8683036 MsG0680030756.01.T01:CDS 50.0%
ACCAAGAAGTCTGCTCCGTC+TGG + Chr6:8682832-8682851 MsG0680030756.01.T01:CDS 55.0%
AGACGGAGCAGACTTCTTGG+TGG - Chr6:8682833-8682852 None:intergenic 55.0%
ATGGGGCTTCACCGGAGAAT+GGG - Chr6:8682897-8682916 None:intergenic 55.0%
CACCAGGGAATTCACCAGTG+AGG - Chr6:8682924-8682943 None:intergenic 55.0%
CCGTACCATGGACTTCCAGA+CGG - Chr6:8682850-8682869 None:intergenic 55.0%
CCGTCTGGAAGTCCATGGTA+CGG + Chr6:8682847-8682866 MsG0680030756.01.T01:CDS 55.0%
CTCAGGGAAGACACATCCCA+AGG - Chr6:8683046-8683065 None:intergenic 55.0%
CTCTTCCCACCCCAATGTCT+TGG - Chr6:8682792-8682811 None:intergenic 55.0%
GAGGCTGTATGGTTCAAGGC+AGG + Chr6:8683096-8683115 MsG0680030756.01.T01:CDS 55.0%
GAGGGTTACCGTATTGCTGG+TGG + Chr6:8683231-8683250 MsG0680030756.01.T01:CDS 55.0%
GGGTGGGAAGAGTCACAATG+AGG + Chr6:8682800-8682819 MsG0680030756.01.T01:CDS 55.0%
GTGGAGGGTTACCGTATTGC+TGG + Chr6:8683228-8683247 MsG0680030756.01.T01:CDS 55.0%
GTTCTCGATGGGTCCCTTTC+CGG - Chr6:8683421-8683440 None:intergenic 55.0%
TCCAGACGGAGCAGACTTCT+TGG - Chr6:8682836-8682855 None:intergenic 55.0%
TGGGCTATGTTGGGTGCCTT+GGG + Chr6:8683027-8683046 MsG0680030756.01.T01:CDS 55.0%
TGGTCTGCGAGGTTCTCGAT+GGG - Chr6:8683432-8683451 None:intergenic 55.0%
TGTCCCAACCGTAGTCACCA+GGG - Chr6:8682939-8682958 None:intergenic 55.0%
! ATCTTAATGGGCGCCGTGGA+GGG + Chr6:8683213-8683232 MsG0680030756.01.T01:CDS 55.0%
! ATGGGCTATGTTGGGTGCCT+TGG + Chr6:8683026-8683045 MsG0680030756.01.T01:CDS 55.0%
! CGTATTGCTGGTGGACCTCT+AGG + Chr6:8683240-8683259 MsG0680030756.01.T01:CDS 55.0%
! GAGGGTGGGCTTGACTACTT+GGG + Chr6:8683135-8683154 MsG0680030756.01.T01:CDS 55.0%
! TATCTTAATGGGCGCCGTGG+AGG + Chr6:8683212-8683231 MsG0680030756.01.T01:CDS 55.0%
! TGAGGGTGGGCTTGACTACT+TGG + Chr6:8683134-8683153 MsG0680030756.01.T01:CDS 55.0%
AAGCCTCGGGATCTTCGGCA+AGG - Chr6:8683314-8683333 None:intergenic 60.0%
AAGGGGTCAAAGCTGCCACC+TGG - Chr6:8683288-8683307 None:intergenic 60.0%
ACACGGTCTGGACCGTACCA+TGG - Chr6:8682862-8682881 None:intergenic 60.0%
ACCCACCCAAGACATTGGGG+TGG + Chr6:8682783-8682802 MsG0680030756.01.T01:CDS 60.0%
ACCCCAATGTCTTGGGTGGG+TGG - Chr6:8682784-8682803 None:intergenic 60.0%
CCCAATGTCTTGGGTGGGTG+GGG - Chr6:8682782-8682801 None:intergenic 60.0%
CCCACCCAAGACATTGGGGT+GGG + Chr6:8682784-8682803 MsG0680030756.01.T01:CDS 60.0%
CCCACCCACCCAAGACATTG+GGG + Chr6:8682780-8682799 MsG0680030756.01.T01:CDS 60.0%
CCCACCCCAATGTCTTGGGT+GGG - Chr6:8682787-8682806 None:intergenic 60.0%
CCCCAATGTCTTGGGTGGGT+GGG - Chr6:8682783-8682802 None:intergenic 60.0%
CCCCACCCACCCAAGACATT+GGG + Chr6:8682779-8682798 MsG0680030756.01.T01:CDS 60.0%
CGGCGAGGCTGTATGGTTCA+AGG + Chr6:8683092-8683111 MsG0680030756.01.T01:CDS 60.0%
CTGCTCCGTCTGGAAGTCCA+TGG + Chr6:8682842-8682861 MsG0680030756.01.T01:CDS 60.0%
GAAGCCCCATCCTACCTCAC+TGG + Chr6:8682907-8682926 MsG0680030756.01.T01:CDS 60.0%
GACTACGGTTGGGACACTGC+TGG + Chr6:8682943-8682962 MsG0680030756.01.T01:CDS 60.0%
GAGGTAGGATGGGGCTTCAC+CGG - Chr6:8682905-8682924 None:intergenic 60.0%
GATCAGCAAGGTGGTCTGCG+AGG - Chr6:8683443-8683462 None:intergenic 60.0%
GATCTTCGGCAAGGCCCAAG+GGG - Chr6:8683305-8683324 None:intergenic 60.0%
GATGGGGCTTCACCGGAGAA+TGG - Chr6:8682898-8682917 None:intergenic 60.0%
GGATCGACTACCTCGCCTAG+AGG - Chr6:8683258-8683277 None:intergenic 60.0%
GGATCTTCGGCAAGGCCCAA+GGG - Chr6:8683306-8683325 None:intergenic 60.0%
GGGTCCCTTTCCGGTCACAA+TGG - Chr6:8683412-8683431 None:intergenic 60.0%
GTGGTCTGCGAGGTTCTCGA+TGG - Chr6:8683433-8683452 None:intergenic 60.0%
GTGTCCCAACCGTAGTCACC+AGG - Chr6:8682940-8682959 None:intergenic 60.0%
TCCCACCCCAATGTCTTGGG+TGG - Chr6:8682788-8682807 None:intergenic 60.0%
TCCCCACCCACCCAAGACAT+TGG + Chr6:8682778-8682797 MsG0680030756.01.T01:CDS 60.0%
TGTCTTGGGTGGGTGGGGAA+AGG - Chr6:8682777-8682796 None:intergenic 60.0%
! AGGTGGCAGCTTTGACCCCT+TGG + Chr6:8683287-8683306 MsG0680030756.01.T01:CDS 60.0%
! GGTGGCAGCTTTGACCCCTT+GGG + Chr6:8683288-8683307 MsG0680030756.01.T01:CDS 60.0%
GGGATCTTCGGCAAGGCCCA+AGG - Chr6:8683307-8683326 None:intergenic 65.0%
! TGCTGGTGGACCTCTAGGCG+AGG + Chr6:8683245-8683264 MsG0680030756.01.T01:CDS 65.0%
GGGCCTTGCCGAAGATCCCG+AGG + Chr6:8683308-8683327 MsG0680030756.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 8682718 8683515 8682718 ID=MsG0680030756.01;Name=MsG0680030756.01
Chr6 mRNA 8682718 8683515 8682718 ID=MsG0680030756.01.T01;Parent=MsG0680030756.01;Name=MsG0680030756.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|265
Chr6 exon 8682718 8683515 8682718 ID=MsG0680030756.01.T01:exon:7205;Parent=MsG0680030756.01.T01
Chr6 CDS 8682718 8683515 8682718 ID=MsG0680030756.01.T01:cds;Parent=MsG0680030756.01.T01
Gene Sequence

>MsG0680030756.01.T01

ATGGCTGCTTCAACAATGTCTCTCTCTTCTTCATCATTTGTAGGGAAGGCAATCAACCTTTCCCCACCCACCCAAGACATTGGGGTGGGAAGAGTCACAATGAGGAAAACAACCACCAAGAAGTCTGCTCCGTCTGGAAGTCCATGGTACGGTCCAGACCGTGTAAAGTATTTGGGCCCATTCTCCGGTGAAGCCCCATCCTACCTCACTGGTGAATTCCCTGGTGACTACGGTTGGGACACTGCTGGACTTTCTGCTGACCCAGAGACATTTGCCAAAAATCGTGAACTCGAGGTCATCCACAGTAGATGGGCTATGTTGGGTGCCTTGGGATGTGTCTTCCCTGAGCTCTTATCTCGCAATGGTGTCAAATTCGGCGAGGCTGTATGGTTCAAGGCAGGATCCCAAATTTTTAGTGAGGGTGGGCTTGACTACTTGGGTAACCCAAGTCTAGTCCATGCACAAAGCATCCTTGCTATATGGGCTGTCCAAGTTATCTTAATGGGCGCCGTGGAGGGTTACCGTATTGCTGGTGGACCTCTAGGCGAGGTAGTCGATCCACTTTATCCAGGTGGCAGCTTTGACCCCTTGGGCCTTGCCGAAGATCCCGAGGCTTTTGCAGAGTTGAAGGTGAAAGAACTAAAAAATGGTAGGTTGGCTATGTTCTCTATGTTTGGATTTTTCGTTCAAGCCATTGTGACCGGAAAGGGACCCATCGAGAACCTCGCAGACCACCTTGCTGATCCAGTTAACAACAATGCTTGGGCTTACGCCACAAACTTTGCTCCTGGAAAATAA

Protein sequence

>MsG0680030756.01.T01

MAASTMSLSSSSFVGKAINLSPPTQDIGVGRVTMRKTTTKKSAPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK*