Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079410 | GAU21893.1 | 98.795 | 83 | 1 | 0 | 1 | 83 | 1 | 83 | 1.61e-52 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079410 | sp|Q8L8A5|GIF1_ARATH | 88.889 | 81 | 9 | 0 | 1 | 81 | 1 | 81 | 3.26e-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079410 | A0A2Z6LX25 | 98.795 | 83 | 1 | 0 | 1 | 83 | 1 | 83 | 7.68e-53 | 169 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0079410 | 0.845116 | 4.962114e-59 | -8.615850e-47 |
| Msa0018920 | Msa0079410 | 0.825496 | 4.540324e-54 | -8.615850e-47 |
| Msa0030070 | Msa0079410 | 0.810434 | 1.155191e-50 | -8.615850e-47 |
| Msa0045620 | Msa0079410 | 0.806219 | 9.148522e-50 | -8.615850e-47 |
| Msa0050530 | Msa0079410 | 0.852031 | 6.027713e-61 | -8.615850e-47 |
| Msa0079410 | Msa0080370 | 0.805782 | 1.130264e-49 | -8.615850e-47 |
| Msa0079410 | Msa0080440 | 0.813122 | 3.003273e-51 | -8.615850e-47 |
| Msa0079410 | Msa0091350 | 0.810673 | 1.025666e-50 | -8.615850e-47 |
| Msa0079410 | Msa0094180 | 0.815192 | 1.048483e-51 | -8.615850e-47 |
| Msa0079410 | Msa0100600 | 0.836943 | 6.959038e-57 | -8.615850e-47 |
| Msa0079410 | Msa0100890 | 0.845569 | 3.742809e-59 | -8.615850e-47 |
| Msa0079410 | Msa0109730 | 0.811269 | 7.616132e-51 | -8.615850e-47 |
| Msa0079410 | Msa0125590 | 0.815781 | 7.754547e-52 | -8.615850e-47 |
| Msa0079410 | Msa0127340 | 0.814903 | 1.215330e-51 | -8.615850e-47 |
| Msa0079410 | Msa0168380 | 0.813529 | 2.444799e-51 | -8.615850e-47 |
| Msa0079410 | Msa0170070 | 0.806419 | 8.301440e-50 | -8.615850e-47 |
| Msa0079410 | Msa0172590 | 0.884571 | 1.711846e-71 | -8.615850e-47 |
| Msa0079410 | Msa0204970 | 0.856427 | 3.241094e-62 | -8.615850e-47 |
| Msa0079410 | Msa0225800 | 0.841616 | 4.265095e-58 | -8.615850e-47 |
| Msa0079410 | Msa0249870 | 0.862492 | 4.877557e-64 | -8.615850e-47 |
| Msa0079410 | Msa0260630 | 0.811101 | 8.283202e-51 | -8.615850e-47 |
| Msa0079410 | Msa0281540 | 0.862308 | 5.554856e-64 | -8.615850e-47 |
| Msa0079410 | Msa0288400 | 0.818151 | 2.277006e-52 | -8.615850e-47 |
| Msa0079410 | Msa0320580 | 0.850075 | 2.146845e-60 | -8.615850e-47 |
| Msa0079410 | Msa0336430 | 0.815355 | 9.647085e-52 | -8.615850e-47 |
| Msa0079410 | Msa0336520 | 0.822351 | 2.481369e-53 | -8.615850e-47 |
| Msa0079410 | Msa0342220 | 0.830675 | 2.569148e-55 | -8.615850e-47 |
| Msa0079410 | Msa0344110 | 0.857863 | 1.221758e-62 | -8.615850e-47 |
| Msa0079410 | Msa0364680 | 0.808119 | 3.622173e-50 | -8.615850e-47 |
| Msa0079410 | Msa0372100 | 0.803985 | 2.684642e-49 | -8.615850e-47 |
| Msa0079410 | Msa0373170 | 0.836466 | 9.203247e-57 | -8.615850e-47 |
| Msa0079410 | Msa0382230 | 0.804946 | 1.692067e-49 | -8.615850e-47 |
| Msa0079410 | Msa0388250 | 0.824072 | 9.838622e-54 | -8.615850e-47 |
| Msa0079410 | Msa0388620 | 0.803748 | 3.006573e-49 | -8.615850e-47 |
| Msa0079410 | Msa0416210 | 0.815349 | 9.677065e-52 | -8.615850e-47 |
| Msa0079410 | Msa0421750 | 0.835439 | 1.677384e-56 | -8.615850e-47 |
| Msa0079410 | Msa0433630 | 0.821024 | 5.029289e-53 | -8.615850e-47 |
| Msa0079410 | Msa0467690 | 0.838362 | 3.008391e-57 | -8.615850e-47 |
| Msa0079410 | Msa0506880 | 0.800103 | 1.686124e-48 | -8.615850e-47 |
| Msa0079410 | Msa0507810 | 0.805016 | 1.636061e-49 | -8.615850e-47 |
| Msa0079410 | Msa0507820 | 0.803308 | 3.709009e-49 | -8.615850e-47 |
| Msa0079410 | Msa0514020 | 0.844499 | 7.281290e-59 | -8.615850e-47 |
| Msa0079410 | Msa0520680 | 0.811002 | 8.704445e-51 | -8.615850e-47 |
| Msa0079410 | Msa0521510 | 0.819307 | 1.244082e-52 | -8.615850e-47 |
| Msa0079410 | Msa0527850 | 0.825785 | 3.879435e-54 | -8.615850e-47 |
| Msa0079410 | Msa0541740 | 0.823361 | 1.443732e-53 | -8.615850e-47 |
| Msa0079410 | Msa0544410 | 0.845790 | 3.258856e-59 | -8.615850e-47 |
| Msa0079410 | Msa0544430 | 0.811050 | 8.497281e-51 | -8.615850e-47 |
| Msa0079410 | Msa0554300 | 0.825833 | 3.778320e-54 | -8.615850e-47 |
| Msa0079410 | Msa0560570 | 0.805122 | 1.555017e-49 | -8.615850e-47 |
| Msa0079410 | Msa0564980 | 0.805468 | 1.315795e-49 | -8.615850e-47 |
| Msa0079410 | Msa0571350 | 0.819680 | 1.022510e-52 | -8.615850e-47 |
| Msa0079410 | Msa0572830 | 0.846954 | 1.569725e-59 | -8.615850e-47 |
| Msa0079410 | Msa0574660 | 0.855232 | 7.241934e-62 | -8.615850e-47 |
| Msa0079410 | Msa0575710 | 0.837495 | 5.027155e-57 | -8.615850e-47 |
| Msa0079410 | Msa0576330 | 0.841908 | 3.571241e-58 | -8.615850e-47 |
| Msa0079410 | Msa0582460 | 0.817639 | 2.971253e-52 | -8.615850e-47 |
| Msa0079410 | Msa0586200 | 0.813150 | 2.961160e-51 | -8.615850e-47 |
| Msa0079410 | Msa0605520 | 0.840998 | 6.203170e-58 | -8.615850e-47 |
| Msa0079410 | Msa0608350 | 0.800995 | 1.109360e-48 | -8.615850e-47 |
| Msa0079410 | Msa0620500 | 0.814496 | 1.495973e-51 | -8.615850e-47 |
| Msa0079410 | Msa0640800 | 0.814831 | 1.261096e-51 | -8.615850e-47 |
| Msa0079410 | Msa0647440 | 0.833416 | 5.399356e-56 | -8.615850e-47 |
| Msa0079410 | Msa0648760 | 0.823453 | 1.373633e-53 | -8.615850e-47 |
| Msa0079410 | Msa0653160 | 0.804631 | 1.968857e-49 | -8.615850e-47 |
| Msa0079410 | Msa0654740 | 0.808482 | 3.030843e-50 | -8.615850e-47 |
| Msa0079410 | Msa0657210 | 0.803502 | 3.380644e-49 | -8.615850e-47 |
| Msa0079410 | Msa0663290 | 0.834582 | 2.757282e-56 | -8.615850e-47 |
| Msa0079410 | Msa0664070 | 0.829721 | 4.392917e-55 | -8.615850e-47 |
| Msa0079410 | Msa0688380 | 0.809426 | 1.903607e-50 | -8.615850e-47 |
| Msa0079410 | Msa0688620 | 0.837227 | 5.887018e-57 | -8.615850e-47 |
| Msa0079410 | Msa0690320 | 0.824379 | 8.331833e-54 | -8.615850e-47 |
| Msa0079410 | Msa0690570 | 0.810873 | 9.281795e-51 | -8.615850e-47 |
| Msa0079410 | Msa0691270 | 0.804322 | 2.284151e-49 | -8.615850e-47 |
| Msa0079410 | Msa0701250 | 0.818233 | 2.181473e-52 | -8.615850e-47 |
| Msa0079410 | Msa0707260 | 0.816842 | 4.489764e-52 | -8.615850e-47 |
| Msa0079410 | Msa0717900 | 0.800741 | 1.250103e-48 | -8.615850e-47 |
| Msa0079410 | Msa0720280 | 0.854774 | 9.840258e-62 | -8.615850e-47 |
| Msa0079410 | Msa0737130 | 0.807414 | 5.113607e-50 | -8.615850e-47 |
| Msa0079410 | Msa0749190 | 0.840225 | 9.887093e-58 | -8.615850e-47 |
| Msa0079410 | Msa0750520 | 0.837120 | 6.268485e-57 | -8.615850e-47 |
| Msa0079410 | Msa0751720 | 0.861830 | 7.787623e-64 | -8.615850e-47 |
| Msa0079410 | Msa0771910 | 0.807002 | 6.252519e-50 | -8.615850e-47 |
| Msa0079410 | Msa0780820 | 0.810634 | 1.045711e-50 | -8.615850e-47 |
| Msa0079410 | Msa0790330 | 0.814509 | 1.486233e-51 | -8.615850e-47 |
| Msa0079410 | Msa0803140 | 0.853472 | 2.336500e-61 | -8.615850e-47 |
| Msa0079410 | Msa0816080 | 0.818216 | 2.201135e-52 | -8.615850e-47 |
| Msa0079410 | Msa0816230 | 0.826197 | 3.096365e-54 | -8.615850e-47 |
| Msa0079410 | Msa0827420 | 0.886147 | 4.402481e-72 | -8.615850e-47 |
| Msa0079410 | Msa0831820 | 0.850130 | 2.072036e-60 | -8.615850e-47 |
| Msa0079410 | Msa0837680 | 0.823882 | 1.090305e-53 | -8.615850e-47 |
| Msa0079410 | Msa0841500 | 0.848997 | 4.290451e-60 | -8.615850e-47 |
| Msa0079410 | Msa0846900 | 0.813133 | 2.986095e-51 | -8.615850e-47 |
| Msa0079410 | Msa0856610 | 0.834315 | 3.217865e-56 | -8.615850e-47 |
| Msa0079410 | Msa0876630 | 0.829423 | 5.191621e-55 | -8.615850e-47 |
| Msa0079410 | Msa0900090 | 0.838877 | 2.215191e-57 | -8.615850e-47 |
| Msa0079410 | Msa0926080 | 0.806263 | 8.956521e-50 | -8.615850e-47 |
| Msa0079410 | Msa0926310 | 0.805234 | 1.472830e-49 | -8.615850e-47 |
| Msa0079410 | Msa0926760 | 0.822893 | 1.856726e-53 | -8.615850e-47 |
| Msa0079410 | Msa0929900 | 0.862861 | 3.755252e-64 | -8.615850e-47 |
| Msa0079410 | Msa0965470 | 0.836806 | 7.540340e-57 | -8.615850e-47 |
| Msa0079410 | Msa0978980 | 0.814405 | 1.566887e-51 | -8.615850e-47 |
| Msa0079410 | Msa0999950 | 0.817573 | 3.074072e-52 | -8.615850e-47 |
| Msa0079410 | Msa1000970 | 0.800829 | 1.199411e-48 | -8.615850e-47 |
| Msa0079410 | Msa1008670 | 0.814772 | 1.299241e-51 | -8.615850e-47 |
| Msa0079410 | Msa1008850 | 0.839367 | 1.653011e-57 | -8.615850e-47 |
| Msa0079410 | Msa1021560 | 0.824978 | 6.019828e-54 | -8.615850e-47 |
| Msa0079410 | Msa1041370 | 0.804923 | 1.710640e-49 | -8.615850e-47 |
| Msa0079410 | Msa1050260 | 0.804772 | 1.840095e-49 | -8.615850e-47 |
| Msa0079410 | Msa1060300 | 0.808798 | 2.594529e-50 | -8.615850e-47 |
| Msa0079410 | Msa1071410 | 0.839698 | 1.356230e-57 | -8.615850e-47 |
| Msa0079410 | Msa1081270 | 0.803379 | 3.586178e-49 | -8.615850e-47 |
| Msa0079410 | Msa1085680 | 0.840205 | 1.000379e-57 | -8.615850e-47 |
| Msa0079410 | Msa1098060 | 0.809659 | 1.696227e-50 | -8.615850e-47 |
| Msa0079410 | Msa1105540 | 0.832616 | 8.539726e-56 | -8.615850e-47 |
| Msa0079410 | Msa1105580 | 0.823552 | 1.302806e-53 | -8.615850e-47 |
| Msa0079410 | Msa1106220 | 0.828235 | 1.006348e-54 | -8.615850e-47 |
| Msa0079410 | Msa1138800 | 0.811318 | 7.434983e-51 | -8.615850e-47 |
| Msa0079410 | Msa1144990 | 0.866234 | 3.309548e-65 | -8.615850e-47 |
| Msa0079410 | Msa1148930 | 0.823995 | 1.025736e-53 | -8.615850e-47 |
| Msa0079410 | Msa1162360 | 0.813309 | 2.731650e-51 | -8.615850e-47 |
| Msa0079410 | Msa1163180 | 0.806868 | 6.674805e-50 | -8.615850e-47 |
| Msa0079410 | Msa1180840 | 0.802793 | 4.738650e-49 | -8.615850e-47 |
| Msa0079410 | Msa1191000 | 0.810600 | 1.063433e-50 | -8.615850e-47 |
| Msa0079410 | Msa1206040 | 0.814495 | 1.496436e-51 | -8.615850e-47 |
| Msa0079410 | Msa1212920 | 0.819451 | 1.153241e-52 | -8.615850e-47 |
| Msa0079410 | Msa1215980 | 0.816735 | 4.744466e-52 | -8.615850e-47 |
| Msa0079410 | Msa1240940 | 0.802271 | 6.071696e-49 | -8.615850e-47 |
| Msa0079410 | Msa1250470 | 0.807173 | 5.751677e-50 | -8.615850e-47 |
| Msa0079410 | Msa1254420 | 0.806039 | 9.983108e-50 | -8.615850e-47 |
| Msa0079410 | Msa1267930 | 0.818272 | 2.137401e-52 | -8.615850e-47 |
| Msa0079410 | Msa1278030 | 0.814757 | 1.309675e-51 | -8.615850e-47 |
| Msa0079410 | Msa1282300 | 0.808727 | 2.686344e-50 | -8.615850e-47 |
| Msa0079410 | Msa1294790 | 0.828314 | 9.633767e-55 | -8.615850e-47 |
| Msa0079410 | Msa1297070 | 0.806976 | 6.331374e-50 | -8.615850e-47 |
| Msa0079410 | Msa1328870 | 0.805253 | 1.459445e-49 | -8.615850e-47 |
| Msa0079410 | Msa1331650 | 0.818385 | 2.014725e-52 | -8.615850e-47 |
| Msa0079410 | Msa1339230 | 0.821963 | 3.053311e-53 | -8.615850e-47 |
| Msa0079410 | Msa1368170 | 0.811198 | 7.891065e-51 | -8.615850e-47 |
| Msa0079410 | Msa1371800 | 0.800269 | 1.559999e-48 | -8.615850e-47 |
| Msa0079410 | Msa1372030 | 0.843114 | 1.709691e-58 | -8.615850e-47 |
| Msa0079410 | Msa1381800 | 0.839541 | 1.489992e-57 | -8.615850e-47 |
| Msa0079410 | Msa1385570 | 0.818226 | 2.189533e-52 | -8.615850e-47 |
| Msa0079410 | Msa1389820 | 0.819253 | 1.279651e-52 | -8.615850e-47 |
| Msa0079410 | Msa1393560 | 0.816344 | 5.805042e-52 | -8.615850e-47 |
| Msa0079410 | Msa1424370 | 0.807913 | 4.005840e-50 | -8.615850e-47 |
| Msa0079410 | Msa1426320 | 0.810838 | 9.445528e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079410 | MtrunA17_Chr1g0190481 | 98.765 | 81 | 1 | 0 | 1 | 81 | 1 | 81 | 1.46e-55 | 171 |
| Msa0079410 | MtrunA17_Chr7g0274341 | 96.296 | 81 | 3 | 0 | 1 | 81 | 1 | 81 | 8.63e-54 | 166 |
| Msa0079410 | MtrunA17_Chr8g0346111 | 60.000 | 80 | 31 | 1 | 7 | 85 | 6 | 85 | 1.91e-26 | 96.7 |
| Msa0079410 | MtrunA17_Chr3g0127591 | 49.091 | 55 | 28 | 0 | 20 | 74 | 11 | 65 | 1.91e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079410 | AT5G28640.1 | 88.889 | 81 | 9 | 0 | 1 | 81 | 1 | 81 | 3.32e-48 | 152 |
| Msa0079410 | AT4G00850.2 | 64.384 | 73 | 24 | 1 | 7 | 77 | 6 | 78 | 3.31e-26 | 96.7 |
| Msa0079410 | AT4G00850.1 | 64.384 | 73 | 24 | 1 | 7 | 77 | 6 | 78 | 5.03e-26 | 96.3 |
| Msa0079410 | AT1G01160.1 | 62.500 | 72 | 26 | 1 | 2 | 72 | 3 | 74 | 9.48e-23 | 87.0 |
| Msa0079410 | AT1G01160.2 | 42.453 | 106 | 26 | 2 | 2 | 72 | 3 | 108 | 8.43e-16 | 69.7 |
Find 39 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGAGCTTGCCAGAGTTC+TGG | 0.291829 | 1_2:+57273877 | None:intergenic |
| GTTTCTTTCTGCTCTTGTTC+AGG | 0.296487 | 1_2:-57274256 | Msa0079410:five_prime_UTR |
| CAAGGTCACGCACCTTTGTT+TGG | 0.315774 | 1_2:-57274230 | Msa0079410:five_prime_UTR |
| GCCAGGCATAGTAGGTGGTT+GGG | 0.340247 | 1_2:+57273408 | None:intergenic |
| ACAACATTCTGAAAATAGAT+AGG | 0.344860 | 1_2:+57273375 | None:intergenic |
| GATTTCTCTGCAGCCTTGAT+TGG | 0.360123 | 1_2:+57273464 | None:intergenic |
| TCATGGGCTGCATCTGCATC+AGG | 0.386454 | 1_2:+57274157 | None:intergenic |
| GGCCAGGCATAGTAGGTGGT+TGG | 0.392149 | 1_2:+57273407 | None:intergenic |
| TGATCAGTAGTGACGTTGTT+AGG | 0.399937 | 1_2:+57274120 | None:intergenic |
| TTCAACAATCTTGAGAATCA+AGG | 0.434695 | 1_2:+57273902 | None:intergenic |
| CACTACTGATCATATTCAAC+AGG | 0.437472 | 1_2:-57274109 | Msa0079410:intron |
| TGTACCTGGCCAGGCATAGT+AGG | 0.442060 | 1_2:+57273400 | None:intergenic |
| CTGCTCTTGTTCAGGTCACA+AGG | 0.447897 | 1_2:-57274248 | Msa0079410:five_prime_UTR |
| CCAGGCATAGTAGGTGGTTG+GGG | 0.455596 | 1_2:+57273409 | None:intergenic |
| CAACATTCTGAAAATAGATA+GGG | 0.466554 | 1_2:+57273376 | None:intergenic |
| ATAATTTCAGGAACCAATCA+AGG | 0.484218 | 1_2:-57273477 | Msa0079410:intron |
| TTTCTTTGAGGCGGCTAAAG+AGG | 0.487663 | 1_2:+57274381 | None:intergenic |
| CCCCAACCACCTACTATGCC+TGG | 0.488367 | 1_2:-57273409 | Msa0079410:CDS |
| AGATAGGGGTGTACCTGGCC+AGG | 0.491173 | 1_2:+57273391 | None:intergenic |
| AAAATAGATAGGGGTGTACC+TGG | 0.491985 | 1_2:+57273386 | None:intergenic |
| GGATAGTAAGCTGCCATCAT+GGG | 0.492977 | 1_2:+57274141 | None:intergenic |
| AGGATAGTAAGCTGCCATCA+TGG | 0.510940 | 1_2:+57274140 | None:intergenic |
| AACAGAGAAACAGAAGAGTC+TGG | 0.538077 | 1_2:+57274286 | None:intergenic |
| CTGTTCTTACTCAGCACACT+CGG | 0.552381 | 1_2:+57273857 | None:intergenic |
| ATTGTTGAAAGCCAGAACTC+TGG | 0.560643 | 1_2:-57273888 | Msa0079410:CDS |
| ACCACCTACTATGCCTGGCC+AGG | 0.560989 | 1_2:-57273404 | Msa0079410:CDS |
| CTACACAACACTTAGAAGAG+TGG | 0.563660 | 1_2:+57274356 | None:intergenic |
| TACAAGTGACCACTTAGGAA+GGG | 0.590960 | 1_2:-57273349 | Msa0079410:three_prime_UTR |
| GTTAGTACAAGTGACCACTT+AGG | 0.591929 | 1_2:-57273354 | Msa0079410:exon |
| GAGAATCAGCTATTGCAGCT+AGG | 0.595794 | 1_2:+57273434 | None:intergenic |
| ACAAGTGACCACTTAGGAAG+GGG | 0.606111 | 1_2:-57273348 | Msa0079410:three_prime_UTR |
| GTACAAGTGACCACTTAGGA+AGG | 0.606116 | 1_2:-57273350 | Msa0079410:three_prime_UTR |
| AACATTCTGAAAATAGATAG+GGG | 0.619418 | 1_2:+57273377 | None:intergenic |
| TGAGGCGGCTAAAGAGGCAA+TGG | 0.620919 | 1_2:+57274387 | None:intergenic |
| ACCTGGCCAGGCATAGTAGG+TGG | 0.636818 | 1_2:+57273403 | None:intergenic |
| CTAAGTTCAAATCCAAACAA+AGG | 0.637687 | 1_2:+57274218 | None:intergenic |
| GATGCAGATGCAGCCCATGA+TGG | 0.647712 | 1_2:-57274154 | Msa0079410:CDS |
| GAGGTGAACCCCTTCCTAAG+TGG | 0.648933 | 1_2:+57273340 | None:intergenic |
| ACAAATCAATCATTGTTGTG+AGG | 0.695015 | 1_2:+57273321 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATAAATAGTTAAAAAA+AGG | + | chr1_2:57273746-57273765 | None:intergenic | 10.0% |
| !! | GAAAATAAATAGTTAAAAAA+AGG | + | chr1_2:57273746-57273765 | None:intergenic | 10.0% |
| !!! | TTTATTTTATTAAGGTTTGT+GGG | + | chr1_2:57273987-57274006 | None:intergenic | 15.0% |
| !! | ATATATACCTAAACAATTAT+TGG | - | chr1_2:57274203-57274222 | Msa0079410:five_prime_UTR | 15.0% |
| !!! | TTTATTTTATTAAGGTTTGT+GGG | + | chr1_2:57273987-57274006 | None:intergenic | 15.0% |
| !! | ATATATACCTAAACAATTAT+TGG | - | chr1_2:57274203-57274222 | Msa0079410:five_prime_UTR | 15.0% |
| !!! | TTATTTTATTAAGGTTTGTG+GGG | + | chr1_2:57273986-57274005 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATTAAGGTTTG+TGG | + | chr1_2:57273988-57274007 | None:intergenic | 20.0% |
| !!! | TTTACTAGTATTAGCTTTTT+TGG | - | chr1_2:57274122-57274141 | Msa0079410:CDS | 20.0% |
| !!! | TTATTTTATTAAGGTTTGTG+GGG | + | chr1_2:57273986-57274005 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATTAAGGTTTG+TGG | + | chr1_2:57273988-57274007 | None:intergenic | 20.0% |
| !!! | TTTACTAGTATTAGCTTTTT+TGG | - | chr1_2:57274122-57274141 | Msa0079410:CDS | 20.0% |
| !! | CTAAAATGTTACAACCTTTT+TGG | - | chr1_2:57274068-57274087 | Msa0079410:intron | 25.0% |
| ! | TATAGCACCAATAATTGTTT+AGG | + | chr1_2:57274213-57274232 | None:intergenic | 25.0% |
| !!! | ATTATTGGTGCTATAATTTC+AGG | - | chr1_2:57274218-57274237 | Msa0079410:five_prime_UTR | 25.0% |
| !! | AACATTCTGAAAATAGATAG+GGG | + | chr1_2:57274333-57274352 | None:intergenic | 25.0% |
| !! | CAACATTCTGAAAATAGATA+GGG | + | chr1_2:57274334-57274353 | None:intergenic | 25.0% |
| !! | ACAACATTCTGAAAATAGAT+AGG | + | chr1_2:57274335-57274354 | None:intergenic | 25.0% |
| !! | CTAAAATGTTACAACCTTTT+TGG | - | chr1_2:57274068-57274087 | Msa0079410:intron | 25.0% |
| ! | TATAGCACCAATAATTGTTT+AGG | + | chr1_2:57274213-57274232 | None:intergenic | 25.0% |
| !!! | ATTATTGGTGCTATAATTTC+AGG | - | chr1_2:57274218-57274237 | Msa0079410:five_prime_UTR | 25.0% |
| !! | AACATTCTGAAAATAGATAG+GGG | + | chr1_2:57274333-57274352 | None:intergenic | 25.0% |
| !! | CAACATTCTGAAAATAGATA+GGG | + | chr1_2:57274334-57274353 | None:intergenic | 25.0% |
| !! | ACAACATTCTGAAAATAGAT+AGG | + | chr1_2:57274335-57274354 | None:intergenic | 25.0% |
| CTAAGTTCAAATCCAAACAA+AGG | + | chr1_2:57273492-57273511 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAAAGAA+AGG | + | chr1_2:57273626-57273645 | None:intergenic | 30.0% | |
| CCAATGGAATTGAAACAAAA+AGG | + | chr1_2:57273649-57273668 | None:intergenic | 30.0% | |
| !! | CCTTTTTGTTTCAATTCCAT+TGG | - | chr1_2:57273646-57273665 | Msa0079410:intron | 30.0% |
| TTCAACAATCTTGAGAATCA+AGG | + | chr1_2:57273808-57273827 | None:intergenic | 30.0% | |
| !!! | TGTCACTTTCTATATTTTGC+AGG | - | chr1_2:57273929-57273948 | Msa0079410:intron | 30.0% |
| !!! | GTCATCATGTTTTGAAACTT+TGG | + | chr1_2:57274042-57274061 | None:intergenic | 30.0% |
| !!! | ACTAGTATTAGCTTTTTTGG+TGG | - | chr1_2:57274125-57274144 | Msa0079410:CDS | 30.0% |
| !!! | CTAGTATTAGCTTTTTTGGT+GGG | - | chr1_2:57274126-57274145 | Msa0079410:CDS | 30.0% |
| !!! | TAGTATTAGCTTTTTTGGTG+GGG | - | chr1_2:57274127-57274146 | Msa0079410:CDS | 30.0% |
| AGATCAAAATTCTGCTTACT+TGG | - | chr1_2:57274166-57274185 | Msa0079410:CDS | 30.0% | |
| ATAATTTCAGGAACCAATCA+AGG | - | chr1_2:57274230-57274249 | Msa0079410:five_prime_UTR | 30.0% | |
| ACAAATCAATCATTGTTGTG+AGG | + | chr1_2:57274389-57274408 | None:intergenic | 30.0% | |
| CTAAGTTCAAATCCAAACAA+AGG | + | chr1_2:57273492-57273511 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAAAGAA+AGG | + | chr1_2:57273626-57273645 | None:intergenic | 30.0% | |
| CCAATGGAATTGAAACAAAA+AGG | + | chr1_2:57273649-57273668 | None:intergenic | 30.0% | |
| !! | CCTTTTTGTTTCAATTCCAT+TGG | - | chr1_2:57273646-57273665 | Msa0079410:intron | 30.0% |
| TTCAACAATCTTGAGAATCA+AGG | + | chr1_2:57273808-57273827 | None:intergenic | 30.0% | |
| !!! | TGTCACTTTCTATATTTTGC+AGG | - | chr1_2:57273929-57273948 | Msa0079410:intron | 30.0% |
| !!! | GTCATCATGTTTTGAAACTT+TGG | + | chr1_2:57274042-57274061 | None:intergenic | 30.0% |
| !!! | ACTAGTATTAGCTTTTTTGG+TGG | - | chr1_2:57274125-57274144 | Msa0079410:CDS | 30.0% |
| !!! | CTAGTATTAGCTTTTTTGGT+GGG | - | chr1_2:57274126-57274145 | Msa0079410:CDS | 30.0% |
| !!! | TAGTATTAGCTTTTTTGGTG+GGG | - | chr1_2:57274127-57274146 | Msa0079410:CDS | 30.0% |
| AGATCAAAATTCTGCTTACT+TGG | - | chr1_2:57274166-57274185 | Msa0079410:CDS | 30.0% | |
| ATAATTTCAGGAACCAATCA+AGG | - | chr1_2:57274230-57274249 | Msa0079410:five_prime_UTR | 30.0% | |
| ACAAATCAATCATTGTTGTG+AGG | + | chr1_2:57274389-57274408 | None:intergenic | 30.0% | |
| ! | AGAAGAGTGGTTTTTCTTTG+AGG | + | chr1_2:57273341-57273360 | None:intergenic | 35.0% |
| CACTACTGATCATATTCAAC+AGG | - | chr1_2:57273598-57273617 | Msa0079410:intron | 35.0% | |
| !!! | TTTTTCTAAGATGTGGGAGT+GGG | - | chr1_2:57273953-57273972 | Msa0079410:intron | 35.0% |
| !!! | AGTATTAGCTTTTTTGGTGG+GGG | - | chr1_2:57274128-57274147 | Msa0079410:CDS | 35.0% |
| ! | AGAAGAGTGGTTTTTCTTTG+AGG | + | chr1_2:57273341-57273360 | None:intergenic | 35.0% |
| CACTACTGATCATATTCAAC+AGG | - | chr1_2:57273598-57273617 | Msa0079410:intron | 35.0% | |
| !!! | TTTTTCTAAGATGTGGGAGT+GGG | - | chr1_2:57273953-57273972 | Msa0079410:intron | 35.0% |
| !!! | AGTATTAGCTTTTTTGGTGG+GGG | - | chr1_2:57274128-57274147 | Msa0079410:CDS | 35.0% |
| !! | AGAGTGGTTTTTCTTTGAGG+CGG | + | chr1_2:57273338-57273357 | None:intergenic | 40.0% |
| CTACACAACACTTAGAAGAG+TGG | + | chr1_2:57273354-57273373 | None:intergenic | 40.0% | |
| AACAGAGAAACAGAAGAGTC+TGG | + | chr1_2:57273424-57273443 | None:intergenic | 40.0% | |
| GTTTCTTTCTGCTCTTGTTC+AGG | - | chr1_2:57273451-57273470 | Msa0079410:CDS | 40.0% | |
| TGATCAGTAGTGACGTTGTT+AGG | + | chr1_2:57273590-57273609 | None:intergenic | 40.0% | |
| !! | AGCAGAGAAAGAGTATCCAA+TGG | + | chr1_2:57273665-57273684 | None:intergenic | 40.0% |
| ATTGTTGAAAGCCAGAACTC+TGG | - | chr1_2:57273819-57273838 | Msa0079410:intron | 40.0% | |
| !!! | TGCAGGCTTTTTCTAAGATG+TGG | - | chr1_2:57273946-57273965 | Msa0079410:intron | 40.0% |
| !!! | GCAGGCTTTTTCTAAGATGT+GGG | - | chr1_2:57273947-57273966 | Msa0079410:intron | 40.0% |
| !!! | CTTTTTCTAAGATGTGGGAG+TGG | - | chr1_2:57273952-57273971 | Msa0079410:intron | 40.0% |
| TCAAGATGCTGTTGCCAAAA+AGG | + | chr1_2:57274085-57274104 | None:intergenic | 40.0% | |
| ! | AAAATAGATAGGGGTGTACC+TGG | + | chr1_2:57274324-57274343 | None:intergenic | 40.0% |
| GTTAGTACAAGTGACCACTT+AGG | - | chr1_2:57274353-57274372 | Msa0079410:five_prime_UTR | 40.0% | |
| TACAAGTGACCACTTAGGAA+GGG | - | chr1_2:57274358-57274377 | Msa0079410:five_prime_UTR | 40.0% | |
| !! | AGAGTGGTTTTTCTTTGAGG+CGG | + | chr1_2:57273338-57273357 | None:intergenic | 40.0% |
| CTACACAACACTTAGAAGAG+TGG | + | chr1_2:57273354-57273373 | None:intergenic | 40.0% | |
| AACAGAGAAACAGAAGAGTC+TGG | + | chr1_2:57273424-57273443 | None:intergenic | 40.0% | |
| GTTTCTTTCTGCTCTTGTTC+AGG | - | chr1_2:57273451-57273470 | Msa0079410:CDS | 40.0% | |
| TGATCAGTAGTGACGTTGTT+AGG | + | chr1_2:57273590-57273609 | None:intergenic | 40.0% | |
| !! | AGCAGAGAAAGAGTATCCAA+TGG | + | chr1_2:57273665-57273684 | None:intergenic | 40.0% |
| ATTGTTGAAAGCCAGAACTC+TGG | - | chr1_2:57273819-57273838 | Msa0079410:intron | 40.0% | |
| !!! | TGCAGGCTTTTTCTAAGATG+TGG | - | chr1_2:57273946-57273965 | Msa0079410:intron | 40.0% |
| !!! | GCAGGCTTTTTCTAAGATGT+GGG | - | chr1_2:57273947-57273966 | Msa0079410:intron | 40.0% |
| !!! | CTTTTTCTAAGATGTGGGAG+TGG | - | chr1_2:57273952-57273971 | Msa0079410:intron | 40.0% |
| TCAAGATGCTGTTGCCAAAA+AGG | + | chr1_2:57274085-57274104 | None:intergenic | 40.0% | |
| ! | AAAATAGATAGGGGTGTACC+TGG | + | chr1_2:57274324-57274343 | None:intergenic | 40.0% |
| GTTAGTACAAGTGACCACTT+AGG | - | chr1_2:57274353-57274372 | Msa0079410:five_prime_UTR | 40.0% | |
| TACAAGTGACCACTTAGGAA+GGG | - | chr1_2:57274358-57274377 | Msa0079410:five_prime_UTR | 40.0% | |
| !! | TTTCTTTGAGGCGGCTAAAG+AGG | + | chr1_2:57273329-57273348 | None:intergenic | 45.0% |
| GGATAGTAAGCTGCCATCAT+GGG | + | chr1_2:57273569-57273588 | None:intergenic | 45.0% | |
| AGGATAGTAAGCTGCCATCA+TGG | + | chr1_2:57273570-57273589 | None:intergenic | 45.0% | |
| CTGTTCTTACTCAGCACACT+CGG | + | chr1_2:57273853-57273872 | None:intergenic | 45.0% | |
| !!! | ATTAGCTTTTTTGGTGGGGG+AGG | - | chr1_2:57274131-57274150 | Msa0079410:CDS | 45.0% |
| !!! | TTAGCTTTTTTGGTGGGGGA+GGG | - | chr1_2:57274132-57274151 | Msa0079410:CDS | 45.0% |
| GATTTCTCTGCAGCCTTGAT+TGG | + | chr1_2:57274246-57274265 | None:intergenic | 45.0% | |
| GAGAATCAGCTATTGCAGCT+AGG | + | chr1_2:57274276-57274295 | None:intergenic | 45.0% | |
| GTACAAGTGACCACTTAGGA+AGG | - | chr1_2:57274357-57274376 | Msa0079410:five_prime_UTR | 45.0% | |
| ACAAGTGACCACTTAGGAAG+GGG | - | chr1_2:57274359-57274378 | Msa0079410:five_prime_UTR | 45.0% | |
| !! | TTTCTTTGAGGCGGCTAAAG+AGG | + | chr1_2:57273329-57273348 | None:intergenic | 45.0% |
| GGATAGTAAGCTGCCATCAT+GGG | + | chr1_2:57273569-57273588 | None:intergenic | 45.0% | |
| AGGATAGTAAGCTGCCATCA+TGG | + | chr1_2:57273570-57273589 | None:intergenic | 45.0% | |
| CTGTTCTTACTCAGCACACT+CGG | + | chr1_2:57273853-57273872 | None:intergenic | 45.0% | |
| !!! | ATTAGCTTTTTTGGTGGGGG+AGG | - | chr1_2:57274131-57274150 | Msa0079410:CDS | 45.0% |
| !!! | TTAGCTTTTTTGGTGGGGGA+GGG | - | chr1_2:57274132-57274151 | Msa0079410:CDS | 45.0% |
| GATTTCTCTGCAGCCTTGAT+TGG | + | chr1_2:57274246-57274265 | None:intergenic | 45.0% | |
| GAGAATCAGCTATTGCAGCT+AGG | + | chr1_2:57274276-57274295 | None:intergenic | 45.0% | |
| GTACAAGTGACCACTTAGGA+AGG | - | chr1_2:57274357-57274376 | Msa0079410:five_prime_UTR | 45.0% | |
| ACAAGTGACCACTTAGGAAG+GGG | - | chr1_2:57274359-57274378 | Msa0079410:five_prime_UTR | 45.0% | |
| !! | AAAATAAATAGTTAAAAAAA+GGG | + | chr1_2:57273745-57273764 | None:intergenic | 5.0% |
| !!! | AAAAAAACTTTATTTTATTA+AGG | + | chr1_2:57273995-57274014 | None:intergenic | 5.0% |
| !! | AAAATAAATAGTTAAAAAAA+GGG | + | chr1_2:57273745-57273764 | None:intergenic | 5.0% |
| !!! | AAAAAAACTTTATTTTATTA+AGG | + | chr1_2:57273995-57274014 | None:intergenic | 5.0% |
| CTGCTCTTGTTCAGGTCACA+AGG | - | chr1_2:57273459-57273478 | Msa0079410:CDS | 50.0% | |
| CAAGGTCACGCACCTTTGTT+TGG | - | chr1_2:57273477-57273496 | Msa0079410:intron | 50.0% | |
| CTGCTCTTGTTCAGGTCACA+AGG | - | chr1_2:57273459-57273478 | Msa0079410:CDS | 50.0% | |
| CAAGGTCACGCACCTTTGTT+TGG | - | chr1_2:57273477-57273496 | Msa0079410:intron | 50.0% | |
| TGAGGCGGCTAAAGAGGCAA+TGG | + | chr1_2:57273323-57273342 | None:intergenic | 55.0% | |
| ! | TCATGGGCTGCATCTGCATC+AGG | + | chr1_2:57273553-57273572 | None:intergenic | 55.0% |
| GATGCAGATGCAGCCCATGA+TGG | - | chr1_2:57273553-57273572 | Msa0079410:intron | 55.0% | |
| CCAGGCATAGTAGGTGGTTG+GGG | + | chr1_2:57274301-57274320 | None:intergenic | 55.0% | |
| GCCAGGCATAGTAGGTGGTT+GGG | + | chr1_2:57274302-57274321 | None:intergenic | 55.0% | |
| TGTACCTGGCCAGGCATAGT+AGG | + | chr1_2:57274310-57274329 | None:intergenic | 55.0% | |
| GAGGTGAACCCCTTCCTAAG+TGG | + | chr1_2:57274370-57274389 | None:intergenic | 55.0% | |
| TGAGGCGGCTAAAGAGGCAA+TGG | + | chr1_2:57273323-57273342 | None:intergenic | 55.0% | |
| ! | TCATGGGCTGCATCTGCATC+AGG | + | chr1_2:57273553-57273572 | None:intergenic | 55.0% |
| GATGCAGATGCAGCCCATGA+TGG | - | chr1_2:57273553-57273572 | Msa0079410:intron | 55.0% | |
| CCAGGCATAGTAGGTGGTTG+GGG | + | chr1_2:57274301-57274320 | None:intergenic | 55.0% | |
| GCCAGGCATAGTAGGTGGTT+GGG | + | chr1_2:57274302-57274321 | None:intergenic | 55.0% | |
| TGTACCTGGCCAGGCATAGT+AGG | + | chr1_2:57274310-57274329 | None:intergenic | 55.0% | |
| GAGGTGAACCCCTTCCTAAG+TGG | + | chr1_2:57274370-57274389 | None:intergenic | 55.0% | |
| CGGTGAGCTTGCCAGAGTTC+TGG | + | chr1_2:57273833-57273852 | None:intergenic | 60.0% | |
| !!! | GCTTTTTTGGTGGGGGAGGG+AGG | - | chr1_2:57274135-57274154 | Msa0079410:CDS | 60.0% |
| CCCCAACCACCTACTATGCC+TGG | - | chr1_2:57274298-57274317 | Msa0079410:five_prime_UTR | 60.0% | |
| GGCCAGGCATAGTAGGTGGT+TGG | + | chr1_2:57274303-57274322 | None:intergenic | 60.0% | |
| ACCACCTACTATGCCTGGCC+AGG | - | chr1_2:57274303-57274322 | Msa0079410:five_prime_UTR | 60.0% | |
| ACCTGGCCAGGCATAGTAGG+TGG | + | chr1_2:57274307-57274326 | None:intergenic | 60.0% | |
| ! | AGATAGGGGTGTACCTGGCC+AGG | + | chr1_2:57274319-57274338 | None:intergenic | 60.0% |
| CGGTGAGCTTGCCAGAGTTC+TGG | + | chr1_2:57273833-57273852 | None:intergenic | 60.0% | |
| !!! | GCTTTTTTGGTGGGGGAGGG+AGG | - | chr1_2:57274135-57274154 | Msa0079410:CDS | 60.0% |
| CCCCAACCACCTACTATGCC+TGG | - | chr1_2:57274298-57274317 | Msa0079410:five_prime_UTR | 60.0% | |
| GGCCAGGCATAGTAGGTGGT+TGG | + | chr1_2:57274303-57274322 | None:intergenic | 60.0% | |
| ACCACCTACTATGCCTGGCC+AGG | - | chr1_2:57274303-57274322 | Msa0079410:five_prime_UTR | 60.0% | |
| ACCTGGCCAGGCATAGTAGG+TGG | + | chr1_2:57274307-57274326 | None:intergenic | 60.0% | |
| ! | AGATAGGGGTGTACCTGGCC+AGG | + | chr1_2:57274319-57274338 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57273318 | 57274411 | 57273318 | ID=Msa0079410;Name=Msa0079410 |
| chr1_2 | mRNA | 57273318 | 57274411 | 57273318 | ID=Msa0079410-mRNA-1;Parent=Msa0079410;Name=Msa0079410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=221|1|1|1|1|1|3|54|91 |
| chr1_2 | exon | 57273318 | 57273489 | 57273318 | ID=Msa0079410-mRNA-1:exon:18045;Parent=Msa0079410-mRNA-1 |
| chr1_2 | exon | 57273867 | 57273943 | 57273867 | ID=Msa0079410-mRNA-1:exon:18044;Parent=Msa0079410-mRNA-1 |
| chr1_2 | exon | 57274110 | 57274411 | 57274110 | ID=Msa0079410-mRNA-1:exon:18043;Parent=Msa0079410-mRNA-1 |
| chr1_2 | five_prime_UTR | 57274191 | 57274411 | 57274191 | ID=Msa0079410-mRNA-1:five_prime_utr;Parent=Msa0079410-mRNA-1 |
| chr1_2 | CDS | 57274110 | 57274190 | 57274110 | ID=Msa0079410-mRNA-1:cds;Parent=Msa0079410-mRNA-1 |
| chr1_2 | CDS | 57273867 | 57273943 | 57273867 | ID=Msa0079410-mRNA-1:cds;Parent=Msa0079410-mRNA-1 |
| chr1_2 | CDS | 57273372 | 57273489 | 57273372 | ID=Msa0079410-mRNA-1:cds;Parent=Msa0079410-mRNA-1 |
| chr1_2 | three_prime_UTR | 57273318 | 57273371 | 57273318 | ID=Msa0079410-mRNA-1:three_prime_utr;Parent=Msa0079410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
