AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577030 MtrunA17_Chr8g0385431 90.722 97 9 0 1 97 1 97 8.90e-51 161
Msa0577030 MtrunA17_Chr8g0384811 81.429 70 13 0 176 245 1 70 2.35e-33 115
Msa0577030 MtrunA17_Chr4g0003561 77.778 81 15 1 168 245 198 278 3.87e-32 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577030 AT1G52630.2 60.494 81 27 2 168 245 109 187 2.28e-20 89.0
Msa0577030 AT1G52630.1 60.494 81 27 2 168 245 197 275 6.71e-20 88.6

Find 57 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAAGAGTTGATGATTA+TGG 0.209793 4_1:+81202865 Msa0577030:CDS
ACGAAGGTAGAGAGACAAAA+AGG 0.292768 4_1:-81204269 None:intergenic
ATTGCCCTTGATTAGATTCA+TGG 0.298368 4_1:-81202816 None:intergenic
TGCTGCCCCTATGGCTTTGA+TGG 0.313125 4_1:-81204350 None:intergenic
AAAGTACTGAACATCGTCTA+AGG 0.315346 4_1:-81203814 None:intergenic
GGCTCCTGGTTCCAAGGGTT+TGG 0.316944 4_1:-81204218 None:intergenic
TCTGTTACAGAATTCTCTAA+TGG 0.333471 4_1:+81202916 Msa0577030:CDS
TTTGTCTCTCTACCTTCGTT+TGG 0.355011 4_1:+81204273 Msa0577030:CDS
CTTATTACTCTGAAAATCAT+AGG 0.355778 4_1:-81202724 None:intergenic
CACTGCATCTAGAAGCTTAG+AGG 0.358154 4_1:-81204239 None:intergenic
CTGGCTATATGCAACCTTAT+CGG 0.368591 4_1:-81204299 None:intergenic
TTTGATAGTTAGCCCGCATT+TGG 0.374560 4_1:+81204402 Msa0577030:CDS
AGAGCAGCTCTTGCATATAA+AGG 0.385108 4_1:-81204172 None:intergenic
TGGCTATATGCAACCTTATC+GGG 0.391989 4_1:-81204298 None:intergenic
ATAACTCACGAGTTCCTTTG+AGG 0.422108 4_1:-81202986 None:intergenic
TAATGAAATTTGCAATGGCC+AGG 0.435515 4_1:+81203578 Msa0577030:CDS
CAACTCAAGAAATCTTACTT+TGG 0.441555 4_1:+81203554 Msa0577030:CDS
CCTTCGTTTGGAGCCCGATA+AGG 0.442527 4_1:+81204285 Msa0577030:CDS
ATATCAGAGTATATTGCTAC+TGG 0.451236 4_1:+81203726 Msa0577030:CDS
CAGGTGAAAGGCCATGGTAT+TGG 0.458174 4_1:-81204324 None:intergenic
TTGCAAGGTGGCCAAACCCT+TGG 0.463438 4_1:+81204207 Msa0577030:CDS
AAATATAGATGTCTTTCATC+AGG 0.469731 4_1:+81202766 Msa0577030:CDS
TAGTGCTACTGCTGCCCCTA+TGG 0.472945 4_1:-81204359 None:intergenic
TCAACTCTTGAATGAGAAGC+TGG 0.495446 4_1:-81202856 None:intergenic
CTTAGAGGCTCCTGGTTCCA+AGG 0.496632 4_1:-81204224 None:intergenic
ATATACTCTGATATATCCAT+TGG 0.503147 4_1:-81203717 None:intergenic
AACTCTCTCACTCCAAATGC+GGG 0.508238 4_1:-81204414 None:intergenic
CCTGCTTCCATCAAAGCCAT+AGG 0.511850 4_1:+81204343 Msa0577030:CDS
CGGGCTAACTATCAAAGTCT+CGG 0.514610 4_1:-81204395 None:intergenic
CTGCTTCCATCAAAGCCATA+GGG 0.529003 4_1:+81204344 Msa0577030:CDS
GTGCAGCTCTACTCTACGAT+TGG 0.529661 4_1:+81203691 Msa0577030:intron
AAAGGCCATGGTATTGGCAC+TGG 0.536876 4_1:-81204318 None:intergenic
TCTAGAAGCTTAGAGGCTCC+TGG 0.538074 4_1:-81204232 None:intergenic
TTGGCTAATGAAATTTGCAA+TGG 0.540919 4_1:+81203573 Msa0577030:CDS
TTTACCATGAATCTAATCAA+GGG 0.547853 4_1:+81202812 Msa0577030:CDS
CCTATGGCTTTGATGGAAGC+AGG 0.549551 4_1:-81204343 None:intergenic
TTAGAGGCTCCTGGTTCCAA+GGG 0.553476 4_1:-81204223 None:intergenic
GTGGCCAAACCCTTGGAACC+AGG 0.557092 4_1:+81204214 Msa0577030:CDS
CTTTGATGGAAGCAGGTGAA+AGG 0.560327 4_1:-81204336 None:intergenic
AGGGGCAGCAGTAGCACTAG+TGG 0.560969 4_1:+81204363 Msa0577030:CDS
TATTGTTGGCTCAACCTCAA+AGG 0.561857 4_1:+81202972 Msa0577030:CDS
ACTCTACGATTGGAAACCAA+TGG 0.567217 4_1:+81203701 Msa0577030:CDS
GAACTCTCTCACTCCAAATG+CGG 0.571410 4_1:-81204415 None:intergenic
AAGTACTGAACATCGTCTAA+GGG 0.580680 4_1:-81203813 None:intergenic
CAAGGGCAATACAGCTACCA+TGG 0.581483 4_1:+81202829 Msa0577030:CDS
GGGCTAACTATCAAAGTCTC+GGG 0.584803 4_1:-81204394 None:intergenic
AATGAAATTTGCAATGGCCA+GGG 0.587107 4_1:+81203579 Msa0577030:CDS
TGGAAGCAGGTGAAAGGCCA+TGG 0.597111 4_1:-81204330 None:intergenic
AATGAGAAGCTGGTTCTCCA+TGG 0.601843 4_1:-81202846 None:intergenic
TATCAGAGTATATTGCTACT+GGG 0.607095 4_1:+81203727 Msa0577030:CDS
ATTGTGATACATATTATGGA+GGG 0.632195 4_1:+81202694 None:intergenic
TCTGTGTCAAGCTTGTTGCA+AGG 0.634897 4_1:+81204192 Msa0577030:CDS
TATAGATGTCTTTCATCAGG+AGG 0.646175 4_1:+81202769 Msa0577030:CDS
GTGTCAAGCTTGTTGCAAGG+TGG 0.650855 4_1:+81204195 Msa0577030:CDS
CCTTATCGGGCTCCAAACGA+AGG 0.660174 4_1:-81204285 None:intergenic
TATAGCCAGTGCCAATACCA+TGG 0.676458 4_1:+81204313 Msa0577030:CDS
TGCTTCCATCAAAGCCATAG+GGG 0.687947 4_1:+81204345 Msa0577030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATTTTCATTGAAAATAA+TGG + chr4_1:81203956-81203975 Msa0577030:intron 15.0%
!! AAATCAAAGAAAAGAAAAAT+TGG - chr4_1:81204132-81204151 None:intergenic 15.0%
!!! CTTATTTTCATTGAAAATAA+TGG + chr4_1:81203956-81203975 Msa0577030:intron 15.0%
!! AAATCAAAGAAAAGAAAAAT+TGG - chr4_1:81204132-81204151 None:intergenic 15.0%
!! GTGTTTACAATTTATACAAT+TGG - chr4_1:81203039-81203058 None:intergenic 20.0%
!! TAAATGATGTTGTCAAAATT+AGG + chr4_1:81203082-81203101 Msa0577030:intron 20.0%
!!! TAGTGATTTTTTATGAATGA+TGG + chr4_1:81203216-81203235 Msa0577030:intron 20.0%
!!! AGTGATTTTTTATGAATGAT+GGG + chr4_1:81203217-81203236 Msa0577030:intron 20.0%
!! TCTGAATTAAAAGAGAAAAA+TGG - chr4_1:81203307-81203326 None:intergenic 20.0%
!!! GTCTTTTTAAATTCTTGAAA+TGG + chr4_1:81203669-81203688 Msa0577030:intron 20.0%
!! ATAAGAACAATCAATAGAAA+TGG - chr4_1:81203941-81203960 None:intergenic 20.0%
!! TCATTGAAAATAATGGTTAT+TGG + chr4_1:81203963-81203982 Msa0577030:intron 20.0%
!! GTGTTTACAATTTATACAAT+TGG - chr4_1:81203039-81203058 None:intergenic 20.0%
!! TAAATGATGTTGTCAAAATT+AGG + chr4_1:81203082-81203101 Msa0577030:intron 20.0%
!!! TAGTGATTTTTTATGAATGA+TGG + chr4_1:81203216-81203235 Msa0577030:intron 20.0%
!!! AGTGATTTTTTATGAATGAT+GGG + chr4_1:81203217-81203236 Msa0577030:intron 20.0%
!! TCTGAATTAAAAGAGAAAAA+TGG - chr4_1:81203307-81203326 None:intergenic 20.0%
!!! GTCTTTTTAAATTCTTGAAA+TGG + chr4_1:81203669-81203688 Msa0577030:intron 20.0%
!! ATAAGAACAATCAATAGAAA+TGG - chr4_1:81203941-81203960 None:intergenic 20.0%
!! TCATTGAAAATAATGGTTAT+TGG + chr4_1:81203963-81203982 Msa0577030:intron 20.0%
!! CTTATTACTCTGAAAATCAT+AGG - chr4_1:81202727-81202746 None:intergenic 25.0%
!! CTATGATTTTCAGAGTAATA+AGG + chr4_1:81202725-81202744 Msa0577030:CDS 25.0%
! AAATATAGATGTCTTTCATC+AGG + chr4_1:81202766-81202785 Msa0577030:CDS 25.0%
!! TTTTACCATGAATCTAATCA+AGG + chr4_1:81202811-81202830 Msa0577030:CDS 25.0%
! TTTACCATGAATCTAATCAA+GGG + chr4_1:81202812-81202831 Msa0577030:CDS 25.0%
!!! ATAGAATGCGATTTTTTCTT+AGG - chr4_1:81202955-81202974 None:intergenic 25.0%
! AAAAAATCGCATTCTATTGT+TGG + chr4_1:81202958-81202977 Msa0577030:CDS 25.0%
! GTAAACACAATTTATACATG+TGG + chr4_1:81203051-81203070 Msa0577030:intron 25.0%
! TGACAACATCATTTAGATTA+AGG - chr4_1:81203077-81203096 None:intergenic 25.0%
! AAATCCATCTAATAAACACA+TGG - chr4_1:81203120-81203139 None:intergenic 25.0%
! TTTGAATATGTATCTCTGAT+AGG + chr4_1:81203348-81203367 Msa0577030:intron 25.0%
! CAATCATTCAAACACAAATA+GGG - chr4_1:81203484-81203503 None:intergenic 25.0%
! ATATACTCTGATATATCCAT+TGG - chr4_1:81203720-81203739 None:intergenic 25.0%
!!! CTCTCTTGAATTTTAATTTC+AGG + chr4_1:81203790-81203809 Msa0577030:CDS 25.0%
! TTGTTTCAATTTCAAGAAAC+AGG - chr4_1:81203844-81203863 None:intergenic 25.0%
! TGAAAATAATGGTTATTGGT+TGG + chr4_1:81203967-81203986 Msa0577030:intron 25.0%
! AGACTAATTCAACATATGAT+TGG + chr4_1:81204025-81204044 Msa0577030:intron 25.0%
!! CTTATTACTCTGAAAATCAT+AGG - chr4_1:81202727-81202746 None:intergenic 25.0%
!! CTATGATTTTCAGAGTAATA+AGG + chr4_1:81202725-81202744 Msa0577030:CDS 25.0%
! AAATATAGATGTCTTTCATC+AGG + chr4_1:81202766-81202785 Msa0577030:CDS 25.0%
!! TTTTACCATGAATCTAATCA+AGG + chr4_1:81202811-81202830 Msa0577030:CDS 25.0%
! TTTACCATGAATCTAATCAA+GGG + chr4_1:81202812-81202831 Msa0577030:CDS 25.0%
!!! ATAGAATGCGATTTTTTCTT+AGG - chr4_1:81202955-81202974 None:intergenic 25.0%
! AAAAAATCGCATTCTATTGT+TGG + chr4_1:81202958-81202977 Msa0577030:CDS 25.0%
! GTAAACACAATTTATACATG+TGG + chr4_1:81203051-81203070 Msa0577030:intron 25.0%
! TGACAACATCATTTAGATTA+AGG - chr4_1:81203077-81203096 None:intergenic 25.0%
! AAATCCATCTAATAAACACA+TGG - chr4_1:81203120-81203139 None:intergenic 25.0%
! TTTGAATATGTATCTCTGAT+AGG + chr4_1:81203348-81203367 Msa0577030:intron 25.0%
! CAATCATTCAAACACAAATA+GGG - chr4_1:81203484-81203503 None:intergenic 25.0%
! ATATACTCTGATATATCCAT+TGG - chr4_1:81203720-81203739 None:intergenic 25.0%
!!! CTCTCTTGAATTTTAATTTC+AGG + chr4_1:81203790-81203809 Msa0577030:CDS 25.0%
! TTGTTTCAATTTCAAGAAAC+AGG - chr4_1:81203844-81203863 None:intergenic 25.0%
! TGAAAATAATGGTTATTGGT+TGG + chr4_1:81203967-81203986 Msa0577030:intron 25.0%
! AGACTAATTCAACATATGAT+TGG + chr4_1:81204025-81204044 Msa0577030:intron 25.0%
!! CATTCAAGAGTTGATGATTA+TGG + chr4_1:81202865-81202884 Msa0577030:CDS 30.0%
TCTGTTACAGAATTCTCTAA+TGG + chr4_1:81202916-81202935 Msa0577030:CDS 30.0%
TACTCCATGTGTTTATTAGA+TGG + chr4_1:81203113-81203132 Msa0577030:intron 30.0%
CCAATCATTCAAACACAAAT+AGG - chr4_1:81203485-81203504 None:intergenic 30.0%
CCTATTTGTGTTTGAATGAT+TGG + chr4_1:81203482-81203501 Msa0577030:intron 30.0%
GTTTGAATGATTGGAATTTG+AGG + chr4_1:81203491-81203510 Msa0577030:intron 30.0%
!!! GTTTTAGTGATAATGGAACT+TGG + chr4_1:81203526-81203545 Msa0577030:CDS 30.0%
CAACTCAAGAAATCTTACTT+TGG + chr4_1:81203554-81203573 Msa0577030:CDS 30.0%
TTGGCTAATGAAATTTGCAA+TGG + chr4_1:81203573-81203592 Msa0577030:CDS 30.0%
ATATCAGAGTATATTGCTAC+TGG + chr4_1:81203726-81203745 Msa0577030:CDS 30.0%
TATCAGAGTATATTGCTACT+GGG + chr4_1:81203727-81203746 Msa0577030:CDS 30.0%
! GTTATTGGTTGGTTCAATTA+CGG + chr4_1:81203978-81203997 Msa0577030:intron 30.0%
!! CTTTTTGTTTCAATCTCTGA+TGG - chr4_1:81204075-81204094 None:intergenic 30.0%
!! CATTCAAGAGTTGATGATTA+TGG + chr4_1:81202865-81202884 Msa0577030:CDS 30.0%
TCTGTTACAGAATTCTCTAA+TGG + chr4_1:81202916-81202935 Msa0577030:CDS 30.0%
TACTCCATGTGTTTATTAGA+TGG + chr4_1:81203113-81203132 Msa0577030:intron 30.0%
CCAATCATTCAAACACAAAT+AGG - chr4_1:81203485-81203504 None:intergenic 30.0%
CCTATTTGTGTTTGAATGAT+TGG + chr4_1:81203482-81203501 Msa0577030:intron 30.0%
GTTTGAATGATTGGAATTTG+AGG + chr4_1:81203491-81203510 Msa0577030:intron 30.0%
!!! GTTTTAGTGATAATGGAACT+TGG + chr4_1:81203526-81203545 Msa0577030:CDS 30.0%
CAACTCAAGAAATCTTACTT+TGG + chr4_1:81203554-81203573 Msa0577030:CDS 30.0%
TTGGCTAATGAAATTTGCAA+TGG + chr4_1:81203573-81203592 Msa0577030:CDS 30.0%
ATATCAGAGTATATTGCTAC+TGG + chr4_1:81203726-81203745 Msa0577030:CDS 30.0%
TATCAGAGTATATTGCTACT+GGG + chr4_1:81203727-81203746 Msa0577030:CDS 30.0%
! GTTATTGGTTGGTTCAATTA+CGG + chr4_1:81203978-81203997 Msa0577030:intron 30.0%
!! CTTTTTGTTTCAATCTCTGA+TGG - chr4_1:81204075-81204094 None:intergenic 30.0%
TATAGATGTCTTTCATCAGG+AGG + chr4_1:81202769-81202788 Msa0577030:CDS 35.0%
ATTGCCCTTGATTAGATTCA+TGG - chr4_1:81202819-81202838 None:intergenic 35.0%
TGGACATGATCAATATACAG+AGG - chr4_1:81203019-81203038 None:intergenic 35.0%
!! GCTTAGCGTTTTAGTGATAA+TGG + chr4_1:81203519-81203538 Msa0577030:intron 35.0%
TAATGAAATTTGCAATGGCC+AGG + chr4_1:81203578-81203597 Msa0577030:CDS 35.0%
AATGAAATTTGCAATGGCCA+GGG + chr4_1:81203579-81203598 Msa0577030:CDS 35.0%
GTTAAGTTAGGGTATAACCT+GGG + chr4_1:81203601-81203620 Msa0577030:intron 35.0%
!! AAGTACTGAACATCGTCTAA+GGG - chr4_1:81203816-81203835 None:intergenic 35.0%
!! AAAGTACTGAACATCGTCTA+AGG - chr4_1:81203817-81203836 None:intergenic 35.0%
CTTGGCTGTTAAATGAAACA+AGG + chr4_1:81203904-81203923 Msa0577030:intron 35.0%
TATAGATGTCTTTCATCAGG+AGG + chr4_1:81202769-81202788 Msa0577030:CDS 35.0%
ATTGCCCTTGATTAGATTCA+TGG - chr4_1:81202819-81202838 None:intergenic 35.0%
TGGACATGATCAATATACAG+AGG - chr4_1:81203019-81203038 None:intergenic 35.0%
!! GCTTAGCGTTTTAGTGATAA+TGG + chr4_1:81203519-81203538 Msa0577030:intron 35.0%
TAATGAAATTTGCAATGGCC+AGG + chr4_1:81203578-81203597 Msa0577030:CDS 35.0%
AATGAAATTTGCAATGGCCA+GGG + chr4_1:81203579-81203598 Msa0577030:CDS 35.0%
GTTAAGTTAGGGTATAACCT+GGG + chr4_1:81203601-81203620 Msa0577030:intron 35.0%
!! AAGTACTGAACATCGTCTAA+GGG - chr4_1:81203816-81203835 None:intergenic 35.0%
!! AAAGTACTGAACATCGTCTA+AGG - chr4_1:81203817-81203836 None:intergenic 35.0%
CTTGGCTGTTAAATGAAACA+AGG + chr4_1:81203904-81203923 Msa0577030:intron 35.0%
TCAACTCTTGAATGAGAAGC+TGG - chr4_1:81202859-81202878 None:intergenic 40.0%
!! TATTGTTGGCTCAACCTCAA+AGG + chr4_1:81202972-81202991 Msa0577030:CDS 40.0%
ATAACTCACGAGTTCCTTTG+AGG - chr4_1:81202989-81203008 None:intergenic 40.0%
GTTATACCCTAACTTAACCC+TGG - chr4_1:81203599-81203618 None:intergenic 40.0%
GGTTAAGTTAGGGTATAACC+TGG + chr4_1:81203600-81203619 Msa0577030:intron 40.0%
ACTCTACGATTGGAAACCAA+TGG + chr4_1:81203701-81203720 Msa0577030:CDS 40.0%
! ATTGGTTGGTTCAATTACGG+CGG + chr4_1:81203981-81204000 Msa0577030:intron 40.0%
TTCAAGTCGACTGTAGCAAA+AGG + chr4_1:81204101-81204120 Msa0577030:intron 40.0%
AGAGCAGCTCTTGCATATAA+AGG - chr4_1:81204175-81204194 None:intergenic 40.0%
CGAAGGTAGAGAGACAAAAA+GGG - chr4_1:81204271-81204290 None:intergenic 40.0%
ACGAAGGTAGAGAGACAAAA+AGG - chr4_1:81204272-81204291 None:intergenic 40.0%
TTTGTCTCTCTACCTTCGTT+TGG + chr4_1:81204273-81204292 Msa0577030:CDS 40.0%
TGGCTATATGCAACCTTATC+GGG - chr4_1:81204301-81204320 None:intergenic 40.0%
CTGGCTATATGCAACCTTAT+CGG - chr4_1:81204302-81204321 None:intergenic 40.0%
! TTTGATAGTTAGCCCGCATT+TGG + chr4_1:81204402-81204421 Msa0577030:CDS 40.0%
TCAACTCTTGAATGAGAAGC+TGG - chr4_1:81202859-81202878 None:intergenic 40.0%
!! TATTGTTGGCTCAACCTCAA+AGG + chr4_1:81202972-81202991 Msa0577030:CDS 40.0%
ATAACTCACGAGTTCCTTTG+AGG - chr4_1:81202989-81203008 None:intergenic 40.0%
GTTATACCCTAACTTAACCC+TGG - chr4_1:81203599-81203618 None:intergenic 40.0%
GGTTAAGTTAGGGTATAACC+TGG + chr4_1:81203600-81203619 Msa0577030:intron 40.0%
ACTCTACGATTGGAAACCAA+TGG + chr4_1:81203701-81203720 Msa0577030:CDS 40.0%
! ATTGGTTGGTTCAATTACGG+CGG + chr4_1:81203981-81204000 Msa0577030:intron 40.0%
TTCAAGTCGACTGTAGCAAA+AGG + chr4_1:81204101-81204120 Msa0577030:intron 40.0%
AGAGCAGCTCTTGCATATAA+AGG - chr4_1:81204175-81204194 None:intergenic 40.0%
CGAAGGTAGAGAGACAAAAA+GGG - chr4_1:81204271-81204290 None:intergenic 40.0%
ACGAAGGTAGAGAGACAAAA+AGG - chr4_1:81204272-81204291 None:intergenic 40.0%
TTTGTCTCTCTACCTTCGTT+TGG + chr4_1:81204273-81204292 Msa0577030:CDS 40.0%
TGGCTATATGCAACCTTATC+GGG - chr4_1:81204301-81204320 None:intergenic 40.0%
CTGGCTATATGCAACCTTAT+CGG - chr4_1:81204302-81204321 None:intergenic 40.0%
! TTTGATAGTTAGCCCGCATT+TGG + chr4_1:81204402-81204421 Msa0577030:CDS 40.0%
! AATGAGAAGCTGGTTCTCCA+TGG - chr4_1:81202849-81202868 None:intergenic 45.0%
CAATGGCCAGGGTTAAGTTA+GGG + chr4_1:81203590-81203609 Msa0577030:intron 45.0%
TTAGGGTATAACCTGGGATG+AGG + chr4_1:81203607-81203626 Msa0577030:intron 45.0%
TAGGGTATAACCTGGGATGA+GGG + chr4_1:81203608-81203627 Msa0577030:intron 45.0%
TCACAGAGCTGCAATCATGA+AGG - chr4_1:81203870-81203889 None:intergenic 45.0%
!! TTGCTACAGTCGACTTGAAC+AGG - chr4_1:81204100-81204119 None:intergenic 45.0%
GTCGACTGTAGCAAAAGGAA+AGG + chr4_1:81204106-81204125 Msa0577030:intron 45.0%
!! TCTGTGTCAAGCTTGTTGCA+AGG + chr4_1:81204192-81204211 Msa0577030:CDS 45.0%
CACTGCATCTAGAAGCTTAG+AGG - chr4_1:81204242-81204261 None:intergenic 45.0%
TATAGCCAGTGCCAATACCA+TGG + chr4_1:81204313-81204332 Msa0577030:CDS 45.0%
CTTTGATGGAAGCAGGTGAA+AGG - chr4_1:81204339-81204358 None:intergenic 45.0%
CTGCTTCCATCAAAGCCATA+GGG + chr4_1:81204344-81204363 Msa0577030:CDS 45.0%
TGCTTCCATCAAAGCCATAG+GGG + chr4_1:81204345-81204364 Msa0577030:CDS 45.0%
GGGCTAACTATCAAAGTCTC+GGG - chr4_1:81204397-81204416 None:intergenic 45.0%
CGGGCTAACTATCAAAGTCT+CGG - chr4_1:81204398-81204417 None:intergenic 45.0%
! AATGAGAAGCTGGTTCTCCA+TGG - chr4_1:81202849-81202868 None:intergenic 45.0%
CAATGGCCAGGGTTAAGTTA+GGG + chr4_1:81203590-81203609 Msa0577030:intron 45.0%
TTAGGGTATAACCTGGGATG+AGG + chr4_1:81203607-81203626 Msa0577030:intron 45.0%
TAGGGTATAACCTGGGATGA+GGG + chr4_1:81203608-81203627 Msa0577030:intron 45.0%
TCACAGAGCTGCAATCATGA+AGG - chr4_1:81203870-81203889 None:intergenic 45.0%
!! TTGCTACAGTCGACTTGAAC+AGG - chr4_1:81204100-81204119 None:intergenic 45.0%
GTCGACTGTAGCAAAAGGAA+AGG + chr4_1:81204106-81204125 Msa0577030:intron 45.0%
!! TCTGTGTCAAGCTTGTTGCA+AGG + chr4_1:81204192-81204211 Msa0577030:CDS 45.0%
CACTGCATCTAGAAGCTTAG+AGG - chr4_1:81204242-81204261 None:intergenic 45.0%
TATAGCCAGTGCCAATACCA+TGG + chr4_1:81204313-81204332 Msa0577030:CDS 45.0%
CTTTGATGGAAGCAGGTGAA+AGG - chr4_1:81204339-81204358 None:intergenic 45.0%
CTGCTTCCATCAAAGCCATA+GGG + chr4_1:81204344-81204363 Msa0577030:CDS 45.0%
TGCTTCCATCAAAGCCATAG+GGG + chr4_1:81204345-81204364 Msa0577030:CDS 45.0%
GGGCTAACTATCAAAGTCTC+GGG - chr4_1:81204397-81204416 None:intergenic 45.0%
CGGGCTAACTATCAAAGTCT+CGG - chr4_1:81204398-81204417 None:intergenic 45.0%
CAAGGGCAATACAGCTACCA+TGG + chr4_1:81202829-81202848 Msa0577030:CDS 50.0%
GCAATGGCCAGGGTTAAGTT+AGG + chr4_1:81203589-81203608 Msa0577030:intron 50.0%
CAATCATCAACCCTCATCCC+AGG - chr4_1:81203621-81203640 None:intergenic 50.0%
!! CTGGGATGAGGGTTGATGAT+TGG + chr4_1:81203619-81203638 Msa0577030:intron 50.0%
GTGCAGCTCTACTCTACGAT+TGG + chr4_1:81203691-81203710 Msa0577030:intron 50.0%
!! GTGTCAAGCTTGTTGCAAGG+TGG + chr4_1:81204195-81204214 Msa0577030:CDS 50.0%
TTAGAGGCTCCTGGTTCCAA+GGG - chr4_1:81204226-81204245 None:intergenic 50.0%
TCTAGAAGCTTAGAGGCTCC+TGG - chr4_1:81204235-81204254 None:intergenic 50.0%
!! AAAGGCCATGGTATTGGCAC+TGG - chr4_1:81204321-81204340 None:intergenic 50.0%
CAGGTGAAAGGCCATGGTAT+TGG - chr4_1:81204327-81204346 None:intergenic 50.0%
!! CCTATGGCTTTGATGGAAGC+AGG - chr4_1:81204346-81204365 None:intergenic 50.0%
CCTGCTTCCATCAAAGCCAT+AGG + chr4_1:81204343-81204362 Msa0577030:CDS 50.0%
CAAGGGCAATACAGCTACCA+TGG + chr4_1:81202829-81202848 Msa0577030:CDS 50.0%
GCAATGGCCAGGGTTAAGTT+AGG + chr4_1:81203589-81203608 Msa0577030:intron 50.0%
CAATCATCAACCCTCATCCC+AGG - chr4_1:81203621-81203640 None:intergenic 50.0%
!! CTGGGATGAGGGTTGATGAT+TGG + chr4_1:81203619-81203638 Msa0577030:intron 50.0%
GTGCAGCTCTACTCTACGAT+TGG + chr4_1:81203691-81203710 Msa0577030:intron 50.0%
!! GTGTCAAGCTTGTTGCAAGG+TGG + chr4_1:81204195-81204214 Msa0577030:CDS 50.0%
TTAGAGGCTCCTGGTTCCAA+GGG - chr4_1:81204226-81204245 None:intergenic 50.0%
TCTAGAAGCTTAGAGGCTCC+TGG - chr4_1:81204235-81204254 None:intergenic 50.0%
!! AAAGGCCATGGTATTGGCAC+TGG - chr4_1:81204321-81204340 None:intergenic 50.0%
CAGGTGAAAGGCCATGGTAT+TGG - chr4_1:81204327-81204346 None:intergenic 50.0%
!! CCTATGGCTTTGATGGAAGC+AGG - chr4_1:81204346-81204365 None:intergenic 50.0%
CCTGCTTCCATCAAAGCCAT+AGG + chr4_1:81204343-81204362 Msa0577030:CDS 50.0%
ATTGCAGCTCTGTGACCGTG+TGG + chr4_1:81203875-81203894 Msa0577030:intron 55.0%
TTGCAGCTCTGTGACCGTGT+GGG + chr4_1:81203876-81203895 Msa0577030:intron 55.0%
ACAGCCAAGCAATGCCCACA+CGG - chr4_1:81203893-81203912 None:intergenic 55.0%
TTGCAAGGTGGCCAAACCCT+TGG + chr4_1:81204207-81204226 Msa0577030:CDS 55.0%
CTTAGAGGCTCCTGGTTCCA+AGG - chr4_1:81204227-81204246 None:intergenic 55.0%
CCTTATCGGGCTCCAAACGA+AGG - chr4_1:81204288-81204307 None:intergenic 55.0%
! CCTTCGTTTGGAGCCCGATA+AGG + chr4_1:81204285-81204304 Msa0577030:CDS 55.0%
TGGAAGCAGGTGAAAGGCCA+TGG - chr4_1:81204333-81204352 None:intergenic 55.0%
!! TGCTGCCCCTATGGCTTTGA+TGG - chr4_1:81204353-81204372 None:intergenic 55.0%
! TAGTGCTACTGCTGCCCCTA+TGG - chr4_1:81204362-81204381 None:intergenic 55.0%
ATTGCAGCTCTGTGACCGTG+TGG + chr4_1:81203875-81203894 Msa0577030:intron 55.0%
TTGCAGCTCTGTGACCGTGT+GGG + chr4_1:81203876-81203895 Msa0577030:intron 55.0%
ACAGCCAAGCAATGCCCACA+CGG - chr4_1:81203893-81203912 None:intergenic 55.0%
TTGCAAGGTGGCCAAACCCT+TGG + chr4_1:81204207-81204226 Msa0577030:CDS 55.0%
CTTAGAGGCTCCTGGTTCCA+AGG - chr4_1:81204227-81204246 None:intergenic 55.0%
CCTTATCGGGCTCCAAACGA+AGG - chr4_1:81204288-81204307 None:intergenic 55.0%
! CCTTCGTTTGGAGCCCGATA+AGG + chr4_1:81204285-81204304 Msa0577030:CDS 55.0%
TGGAAGCAGGTGAAAGGCCA+TGG - chr4_1:81204333-81204352 None:intergenic 55.0%
!! TGCTGCCCCTATGGCTTTGA+TGG - chr4_1:81204353-81204372 None:intergenic 55.0%
! TAGTGCTACTGCTGCCCCTA+TGG - chr4_1:81204362-81204381 None:intergenic 55.0%
! GTGACCGTGTGGGCATTGCT+TGG + chr4_1:81203886-81203905 Msa0577030:intron 60.0%
GTGGCCAAACCCTTGGAACC+AGG + chr4_1:81204214-81204233 Msa0577030:CDS 60.0%
GGCTCCTGGTTCCAAGGGTT+TGG - chr4_1:81204221-81204240 None:intergenic 60.0%
AGGGGCAGCAGTAGCACTAG+TGG + chr4_1:81204363-81204382 Msa0577030:CDS 60.0%
! GTGACCGTGTGGGCATTGCT+TGG + chr4_1:81203886-81203905 Msa0577030:intron 60.0%
GTGGCCAAACCCTTGGAACC+AGG + chr4_1:81204214-81204233 Msa0577030:CDS 60.0%
GGCTCCTGGTTCCAAGGGTT+TGG - chr4_1:81204221-81204240 None:intergenic 60.0%
AGGGGCAGCAGTAGCACTAG+TGG + chr4_1:81204363-81204382 Msa0577030:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 81202709 81204429 81202709 ID=Msa0577030;Name=Msa0577030
chr4_1 mRNA 81202709 81204429 81202709 ID=Msa0577030-mRNA-1;Parent=Msa0577030;Name=Msa0577030-mRNA-1;_AED=0.29;_eAED=0.43;_QI=0|0|0|0.75|1|1|4|0|253
chr4_1 exon 81202709 81202999 81202709 ID=Msa0577030-mRNA-1:exon:29230;Parent=Msa0577030-mRNA-1
chr4_1 exon 81203525 81203600 81203525 ID=Msa0577030-mRNA-1:exon:29231;Parent=Msa0577030-mRNA-1
chr4_1 exon 81203697 81203829 81203697 ID=Msa0577030-mRNA-1:exon:29232;Parent=Msa0577030-mRNA-1
chr4_1 exon 81204168 81204429 81204168 ID=Msa0577030-mRNA-1:exon:29233;Parent=Msa0577030-mRNA-1
chr4_1 CDS 81202709 81202999 81202709 ID=Msa0577030-mRNA-1:cds;Parent=Msa0577030-mRNA-1
chr4_1 CDS 81203525 81203600 81203525 ID=Msa0577030-mRNA-1:cds;Parent=Msa0577030-mRNA-1
chr4_1 CDS 81203697 81203829 81203697 ID=Msa0577030-mRNA-1:cds;Parent=Msa0577030-mRNA-1
chr4_1 CDS 81204168 81204429 81204168 ID=Msa0577030-mRNA-1:cds;Parent=Msa0577030-mRNA-1
Gene Sequence

>Msa0577030

ATGGAGGGTCTTCTGCCTATGATTTTCAGAGTAATAAGGAAAACAAAAAGTCGCAGAAAATATAGATGTCTTTCATCAGGAGGTGCTCTACGTAACAACGATTTTTACCATGAATCTAATCAAGGGCAATACAGCTACCATGGAGAACCAGCTTCTCATTCAAGAGTTGATGATTATGGAGAGAAAATTGATTATCGAAGATATAATTCTGTTACAGAATTCTCTAATGGATTCTCTTCTTCGCCTAAGAAAAAATCGCATTCTATTGTTGGCTCAACCTCAAAGGAACTCCGTTTTAGTGATAATGGAACTTGGAAGTTCAACTCAAGAAATCTTACTTTGGCTAATGAAATTTGCAATGGCCAGGCTCTACTCTACGATTGGAAACCAATGGATATATCAGAGTATATTGCTACTGGGTCTCAATCAGATGCAAAGAGATACGAGTGCTTGAAGAGAACTCTCTTGAATTTTAATTTCAGGCCCTTAGACGATGTTCATTATCCTTTATATGCAAGAGCTGCTCTGTGTCAAGCTTGTTGCAAGGTGGCCAAACCCTTGGAACCAGGAGCCTCTAAGCTTCTAGATGCAGTGTGTAAACCCTTTTTGTCTCTCTACCTTCGTTTGGAGCCCGATAAGGTTGCATATAGCCAGTGCCAATACCATGGCCTTTCACCTGCTTCCATCAAAGCCATAGGGGCAGCAGTAGCACTAGTGGAAAGAAAACCCGAGACTTTGATAGTTAGCCCGCATTTGGAGTGA

Protein sequence

>Msa0577030

MEGLLPMIFRVIRKTKSRRKYRCLSSGGALRNNDFYHESNQGQYSYHGEPASHSRVDDYGEKIDYRRYNSVTEFSNGFSSSPKKKSHSIVGSTSKELRFSDNGTWKFNSRNLTLANEICNGQALLYDWKPMDISEYIATGSQSDAKRYECLKRTLLNFNFRPLDDVHYPLYARAALCQACCKVAKPLEPGASKLLDAVCKPFLSLYLRLEPDKVAYSQCQYHGLSPASIKAIGAAVALVERKPETLIVSPHLE*