AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0410710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0410710 MtrunA17_Chr3g0111011 98.485 264 4 0 30 293 1 264 0.0 531
Msa0410710 MtrunA17_Chr1g0212841 60.096 208 83 0 84 291 3 210 5.48e-93 274
Msa0410710 MtrunA17_Chr1g0181861 27.363 201 127 7 101 288 36 230 2.06e-14 71.2
Msa0410710 MtrunA17_Chr7g0263221 27.094 203 129 7 101 290 35 231 4.26e-12 64.7
Msa0410710 MtrunA17_Chr1g0181851 25.773 194 110 6 101 290 32 195 8.66e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0410710 AT5G16710.1 68.235 255 71 3 49 293 4 258 1.34e-126 361
Msa0410710 AT1G75270.1 61.722 209 79 1 84 291 3 211 1.45e-95 281
Msa0410710 AT1G19570.1 58.373 209 86 1 84 291 3 211 2.36e-86 258
Msa0410710 AT1G19550.1 48.148 162 61 1 130 291 13 151 9.69e-46 152

Find 97 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGGGCAGCACTAGTTTA+AGG 0.162927 3_2:+52436282 None:intergenic
AACAATTATGCTTTAGTTCA+TGG 0.222431 3_2:+52436407 None:intergenic
AGCAACACCCTTTGGCTAAA+AGG 0.227026 3_2:+52439029 None:intergenic
TGCTCTACATGAAGCCTTCA+TGG 0.259323 3_2:+52436343 None:intergenic
TTTCTTAAATCCACCAATTT+CGG 0.274589 3_2:+52438975 None:intergenic
TTTACCTTATGAGCCGAAAT+TGG 0.293942 3_2:-52438988 Msa0410710:CDS
ATGTCTTTCCCATTGATAAA+AGG 0.296522 3_2:+52437491 None:intergenic
CTGACCTTGGTCTTAATAAA+AGG 0.302468 3_2:-52436221 Msa0410710:three_prime_UTR
TGCTTGTTCTGTTCCGTCAT+TGG 0.311879 3_2:+52438078 None:intergenic
CAGAAGACATTAATACTCTA+AGG 0.322827 3_2:+52441294 None:intergenic
TTACAGTCTCCAATCTTGTT+AGG 0.323971 3_2:+52441221 None:intergenic
CTTTGGGACATTATAAGAAA+TGG 0.339739 3_2:-52437418 Msa0410710:CDS
TCATTTGCTTGAGTCTCTTA+AGG 0.341122 3_2:-52436523 Msa0410710:three_prime_UTR
GTTTGTGTGCGTTTGTTTGT+AGG 0.341403 3_2:+52441446 None:intergenic
GGACAAGCAAATCACCATTC+TGG 0.348383 3_2:+52438948 None:intergenic
TATCATCAACCCTCTACTTT+AGG 0.351222 3_2:+52436569 None:intergenic
TTCCCGTCGAAGTTTATTAC+AGG 0.353177 3_2:+52438807 None:intergenic
TACCATTTGGAGATTGCTTT+GGG 0.358598 3_2:-52437434 Msa0410710:CDS
GCTAAATTACATAACGATAT+TGG 0.367155 3_2:+52436442 None:intergenic
GCTTGTTCTGTTCCGTCATT+GGG 0.376742 3_2:+52438079 None:intergenic
GCCACATATTGTAACATGTT+AGG 0.377702 3_2:-52436372 Msa0410710:three_prime_UTR
TGCTCCTCCTTCTGAGCCAT+TGG 0.379937 3_2:-52441273 Msa0410710:CDS
CTTACCACTCCTAACAAGAT+TGG 0.386618 3_2:-52441230 Msa0410710:CDS
TACCTTCAGGACTGATTTCA+AGG 0.389717 3_2:+52438835 None:intergenic
ATACCATTTGGAGATTGCTT+TGG 0.401508 3_2:-52437435 Msa0410710:CDS
GGGGTCACCAATGGTGGGCT+AGG 0.413216 3_2:+52438735 None:intergenic
TCAGGTGGGGTCACCAATGG+TGG 0.418534 3_2:+52438729 None:intergenic
TCCACCAATTTCGGCTCATA+AGG 0.421633 3_2:+52438984 None:intergenic
TTTGTAGGAGTAAGAGATGA+AGG 0.427341 3_2:+52441461 None:intergenic
TTCCTTGAGGTAATCGTTGA+AGG 0.431943 3_2:+52438036 None:intergenic
GCTTTCTTTACCCTCAATAT+CGG 0.432392 3_2:-52436196 Msa0410710:three_prime_UTR
ATAGCTTTGGTCCTAGTGAT+AGG 0.433953 3_2:+52437456 None:intergenic
ATTGGTGACCCCACCTGAAA+AGG 0.441774 3_2:-52438724 Msa0410710:CDS
ATCTCCAAATGGTATAGCTT+TGG 0.443085 3_2:+52437443 None:intergenic
TAATAAACTTCGACGGGAAG+TGG 0.443533 3_2:-52438803 Msa0410710:CDS
AATACTGAAACCGTTGTTGA+AGG 0.447254 3_2:+52441322 None:intergenic
TCGGTAACGAAGGTGGTTAA+CGG 0.448814 3_2:+52441370 None:intergenic
AGGACCAAAGCTATACCATT+TGG 0.449238 3_2:-52437447 Msa0410710:CDS
CCCTAACATGTTACAATATG+TGG 0.462740 3_2:+52436371 None:intergenic
CCAGTGTCAGCAACACCCTT+TGG 0.465405 3_2:+52439021 None:intergenic
GCAACACCCTTTGGCTAAAA+GGG 0.469686 3_2:+52439030 None:intergenic
ATTACAGGAACTTTACCTTC+AGG 0.472085 3_2:+52438822 None:intergenic
CCACATATTGTAACATGTTA+GGG 0.476405 3_2:-52436371 Msa0410710:three_prime_UTR
TAGTTCATGGTGAATAATCA+AGG 0.477864 3_2:+52436420 None:intergenic
CAGGTGGGGTCACCAATGGT+GGG 0.506564 3_2:+52438730 None:intergenic
CTAGTTGAAACGGCGTAGCT+TGG 0.507274 3_2:+52441347 None:intergenic
TTGAAACGGCGTAGCTTGGT+CGG 0.515114 3_2:+52441351 None:intergenic
GTACATTTGAACCGATATTG+AGG 0.515382 3_2:+52436185 None:intergenic
GGGTGATGTGCCACTGACCT+TGG 0.518400 3_2:-52436234 Msa0410710:three_prime_UTR
ACCTTATGAGCCGAAATTGG+TGG 0.524221 3_2:-52438985 Msa0410710:CDS
GTCCCAAAGCAATCTCCAAA+TGG 0.525825 3_2:+52437432 None:intergenic
CCAAAGGGTGTTGCTGACAC+TGG 0.528417 3_2:-52439021 Msa0410710:CDS
CAGCCGGAGGATGTCATTGA+AGG 0.529861 3_2:-52436599 Msa0410710:CDS
AAAGAAAAGAGTAGAATGAG+TGG 0.530082 3_2:+52436545 None:intergenic
GCAACTTCCAATGGCTCAGA+AGG 0.530234 3_2:+52441266 None:intergenic
CTTCAAGTAAGACTTCAAAA+AGG 0.533977 3_2:+52437376 None:intergenic
AGATTTAATCACACAAACAT+TGG 0.534999 3_2:-52438769 Msa0410710:CDS
AATATATACTCAACTAGAGT+CGG 0.536748 3_2:+52436494 None:intergenic
TTCCTGTAATAAACTTCGAC+GGG 0.536777 3_2:-52438809 Msa0410710:CDS
GCTTTAACAGCAACTTCCAA+TGG 0.538010 3_2:+52441257 None:intergenic
AGAAGACATTAATACTCTAA+GGG 0.541970 3_2:+52441295 None:intergenic
GTTGAAGGAGCTAGTTGAAA+CGG 0.542410 3_2:+52441337 None:intergenic
TACATTTGAACCGATATTGA+GGG 0.545820 3_2:+52436186 None:intergenic
TGAATTCTAACGGTGGACAT+TGG 0.546517 3_2:+52441419 None:intergenic
CATTAACACACGTGCACAGC+CGG 0.557161 3_2:-52436615 Msa0410710:CDS
GAAGTATCCTAGCCCACCAT+TGG 0.558980 3_2:-52438742 Msa0410710:CDS
CAACCTTCAATGACATCCTC+CGG 0.565403 3_2:+52436596 None:intergenic
TTCCTTGAAATCAGTCCTGA+AGG 0.565919 3_2:-52438837 Msa0410710:CDS
GTTCCTGTAATAAACTTCGA+CGG 0.569489 3_2:-52438810 Msa0410710:CDS
TCAACTAGCTCCTTCAACAA+CGG 0.572004 3_2:-52441332 Msa0410710:CDS
CGGAGGATGTCATTGAAGGT+TGG 0.572766 3_2:-52436595 Msa0410710:CDS
TGCTGAAACTTGAATTCTAA+CGG 0.573659 3_2:+52441409 None:intergenic
GTCTCCAATCTTGTTAGGAG+TGG 0.575745 3_2:+52441226 None:intergenic
ACGAAGGTGGTTAACGGTGG+CGG 0.577042 3_2:+52441376 None:intergenic
ATGTTAGGGAGAGGCCATGA+AGG 0.588445 3_2:-52436357 Msa0410710:three_prime_UTR
TATTGTAACATGTTAGGGAG+AGG 0.592034 3_2:-52436366 Msa0410710:three_prime_UTR
AACATGTTACAATATGTGGC+CGG 0.598307 3_2:+52436375 None:intergenic
AAAGGTCAGCGAATCAGGTA+CGG 0.599548 3_2:+52437394 None:intergenic
AGTAAGAGATGAAGGTGATG+TGG 0.600746 3_2:+52441469 None:intergenic
TTTATTAAGACCAAGGTCAG+TGG 0.601261 3_2:+52436224 None:intergenic
CTCCTTCAACGATTACCTCA+AGG 0.601777 3_2:-52438038 Msa0410710:CDS
ACTTCCAATGGCTCAGAAGG+AGG 0.604566 3_2:+52441269 None:intergenic
AATAAACTTCGACGGGAAGT+GGG 0.608951 3_2:-52438802 Msa0410710:CDS
ATTTAAGAAACAAACCAGAA+TGG 0.617097 3_2:-52438962 Msa0410710:intron
AGCTTGGTCGGTAACGAAGG+TGG 0.617242 3_2:+52441363 None:intergenic
AGGTTGGCGTCCTAAAGTAG+AGG 0.619348 3_2:-52436579 Msa0410710:CDS
GAAGACATTAATACTCTAAG+GGG 0.621045 3_2:+52441296 None:intergenic
AAAAGCAAAGATCCCAATGA+CGG 0.633633 3_2:-52438091 Msa0410710:CDS
CGTAGCTTGGTCGGTAACGA+AGG 0.633889 3_2:+52441360 None:intergenic
GGTTGGCGTCCTAAAGTAGA+GGG 0.649275 3_2:-52436578 Msa0410710:CDS
AAGGGTGTTGCTGACACTGG+AGG 0.656952 3_2:-52439018 Msa0410710:CDS
ATTGGTATTCAACTCTACAG+TGG 0.666375 3_2:+52436460 None:intergenic
TCTGCGGCTGACCTATCACT+AGG 0.671764 3_2:-52437467 Msa0410710:CDS
TAACACACGTGCACAGCCGG+AGG 0.694276 3_2:-52436612 Msa0410710:CDS
CAATGGGAAAGACATATCTG+CGG 0.711997 3_2:-52437483 Msa0410710:CDS
GTAACGAAGGTGGTTAACGG+TGG 0.728437 3_2:+52441373 None:intergenic
TGAAACTTGAATTCTAACGG+TGG 0.756125 3_2:+52441412 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTGAAAAATACA+TGG - chr3_2:52438927-52438946 Msa0410710:intron 10.0%
!!! TTTTTTGATTTTAATACATT+AGG - chr3_2:52439258-52439277 Msa0410710:intron 10.0%
!!! TTTTTGATTTTAATACATTA+GGG - chr3_2:52439259-52439278 Msa0410710:intron 10.0%
!! ATATAAACAAAAATCTTCTT+TGG + chr3_2:52437842-52437861 None:intergenic 15.0%
!!! ATTTTTGTTTATATTTGTAG+AGG - chr3_2:52437848-52437867 Msa0410710:intron 15.0%
!! CAACAAAAAAAATTATTACA+AGG + chr3_2:52438672-52438691 None:intergenic 15.0%
!!! CTTGTAATAATTTTTTTTGT+TGG - chr3_2:52438670-52438689 Msa0410710:intron 15.0%
!! TTATAATTTGGATATATTCA+AGG + chr3_2:52439099-52439118 None:intergenic 15.0%
!! ACAAAAATATAAGGAAAAAA+GGG + chr3_2:52439535-52439554 None:intergenic 15.0%
!! AGATGTTACAAAATATTAAA+CGG - chr3_2:52439711-52439730 Msa0410710:intron 15.0%
!! TTGTAAAGTTTATGAATAAT+TGG - chr3_2:52439809-52439828 Msa0410710:intron 15.0%
!!! TTATATAAATAGAAGTGTTT+TGG + chr3_2:52439917-52439936 None:intergenic 15.0%
!! TTCTATTTATATAACTTTGA+GGG - chr3_2:52439923-52439942 Msa0410710:intron 15.0%
!!! ACACAATTATTTCTTATATA+GGG + chr3_2:52441273-52441292 None:intergenic 15.0%
!!! ATACACATTTGATAAATTTT+CGG + chr3_2:52441381-52441400 None:intergenic 15.0%
!!! TATTTGATAATACATCTTTT+TGG + chr3_2:52441417-52441436 None:intergenic 15.0%
!! AATAACTAAAACCATGAAAA+GGG + chr3_2:52436350-52436369 None:intergenic 20.0%
!! AAATAACTAAAACCATGAAA+AGG + chr3_2:52436351-52436370 None:intergenic 20.0%
!! AATTACATTAAATTATGTCG+AGG - chr3_2:52436555-52436574 Msa0410710:exon 20.0%
!!! CATAAGTTTTGAAAATGTTT+AGG - chr3_2:52436626-52436645 Msa0410710:CDS 20.0%
!!! AATTTTATATACCCTTATGA+TGG - chr3_2:52436764-52436783 Msa0410710:intron 20.0%
!! TATACTACTTAAGTGAATTA+AGG - chr3_2:52437056-52437075 Msa0410710:intron 20.0%
!!! TAAGCAAAAAACTACATTTT+AGG - chr3_2:52437117-52437136 Msa0410710:intron 20.0%
!! TATAATAGACCAAATACATT+AGG + chr3_2:52437154-52437173 None:intergenic 20.0%
!! CATTGAATACTTAATGTATT+TGG + chr3_2:52437181-52437200 None:intergenic 20.0%
!!! TTTATTTTTGCTTTAGTTCA+TGG - chr3_2:52437734-52437753 Msa0410710:intron 20.0%
!! AAATCAAAGAACAAAGATAA+AGG + chr3_2:52438270-52438289 None:intergenic 20.0%
!!! TTTGTTCTTTGATTTAATTG+TGG - chr3_2:52438275-52438294 Msa0410710:intron 20.0%
!!! ATAATTTTTTTTGTTGGTTC+AGG - chr3_2:52438676-52438695 Msa0410710:intron 20.0%
!! TTCATGGATGATTTATAATT+TGG + chr3_2:52439111-52439130 None:intergenic 20.0%
!!! TTTTGATTAATTGTGTCATA+CGG + chr3_2:52439298-52439317 None:intergenic 20.0%
!! AAGTAAATACAAGAATAAAG+AGG + chr3_2:52439333-52439352 None:intergenic 20.0%
!! TCTTTATTCTTGTATTTACT+TGG - chr3_2:52439332-52439351 Msa0410710:intron 20.0%
!!! AAGATCTTTTCTACATTTAT+TGG - chr3_2:52439415-52439434 Msa0410710:intron 20.0%
!! GACAAAAATATAAGGAAAAA+AGG + chr3_2:52439536-52439555 None:intergenic 20.0%
!!! CTATAAACTTTCAGTATTTT+AGG - chr3_2:52439579-52439598 Msa0410710:intron 20.0%
!! GATGTTACAAAATATTAAAC+GGG - chr3_2:52439712-52439731 Msa0410710:intron 20.0%
!! ATGTTACAAAATATTAAACG+GGG - chr3_2:52439713-52439732 Msa0410710:intron 20.0%
!! CTTCTATTTATATAACTTTG+AGG - chr3_2:52439922-52439941 Msa0410710:intron 20.0%
!! GGTTAAAAAATTTATACGAA+AGG + chr3_2:52439998-52440017 None:intergenic 20.0%
!! CAAATAGTTTACAAAATTTG+CGG - chr3_2:52440310-52440329 Msa0410710:intron 20.0%
!! AGTGAAAATGATTTATCAAT+AGG - chr3_2:52440379-52440398 Msa0410710:intron 20.0%
!! GTGAAAATGATTTATCAATA+GGG - chr3_2:52440380-52440399 Msa0410710:intron 20.0%
!! AAAGTTCAAAATTGCAAAAA+CGG + chr3_2:52440520-52440539 None:intergenic 20.0%
!!! CATTATTTTTCGTTTACATT+CGG + chr3_2:52440692-52440711 None:intergenic 20.0%
!!! CATAATTGTTATTTTATAGC+CGG - chr3_2:52441142-52441161 Msa0410710:intron 20.0%
!!! CACACAATTATTTCTTATAT+AGG + chr3_2:52441274-52441293 None:intergenic 20.0%
! AGAAGACATTAATACTCTAA+GGG + chr3_2:52436244-52436263 None:intergenic 25.0%
!! AAAAATTCTTACCCTTTTCA+TGG - chr3_2:52436336-52436355 Msa0410710:three_prime_UTR 25.0%
!!! TTGAGCTTGTTTTTTTGTAT+TGG - chr3_2:52436377-52436396 Msa0410710:three_prime_UTR 25.0%
!! ATTAGTATTTGAGACATTGA+TGG - chr3_2:52436420-52436439 Msa0410710:three_prime_UTR 25.0%
! GAAATTCAAATCACAAACAA+TGG - chr3_2:52436858-52436877 Msa0410710:intron 25.0%
! AATTCACTTAAGTAGTATAC+AGG + chr3_2:52437055-52437074 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+TGG + chr3_2:52437216-52437235 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr3_2:52437216-52437235 Msa0410710:intron 25.0%
! TTAGTATTATATACTACCTC+CGG + chr3_2:52437238-52437257 None:intergenic 25.0%
!! TCTAAAATTTAGCTAGTAAC+TGG + chr3_2:52437591-52437610 None:intergenic 25.0%
! TAATAATTCATAACTACCCA+AGG + chr3_2:52438083-52438102 None:intergenic 25.0%
! AGTTATGAATTATTAGAGGA+AGG - chr3_2:52438088-52438107 Msa0410710:CDS 25.0%
! TGAATAGACAATTCAACAAA+GGG + chr3_2:52438484-52438503 None:intergenic 25.0%
! TTTCTTAAATCCACCAATTT+CGG + chr3_2:52438564-52438583 None:intergenic 25.0%
! ATTTAAGAAACAAACCAGAA+TGG - chr3_2:52438574-52438593 Msa0410710:intron 25.0%
! AGATTTAATCACACAAACAT+TGG - chr3_2:52438767-52438786 Msa0410710:CDS 25.0%
! TTATACATTTCCTCATCATT+TGG - chr3_2:52438855-52438874 Msa0410710:intron 25.0%
! ACTAAGGAAAAATACATTCA+TGG + chr3_2:52439127-52439146 None:intergenic 25.0%
!! GTATTTTTCCTTAGTCAATT+TGG - chr3_2:52439132-52439151 Msa0410710:intron 25.0%
!! TTCTTTTGTTAGCAATTTCA+TGG + chr3_2:52439224-52439243 None:intergenic 25.0%
!!! TTTTCCTTATATTTTTGTCC+CGG - chr3_2:52439537-52439556 Msa0410710:intron 25.0%
! ACACTACAAGAAAAGTTATA+GGG + chr3_2:52439657-52439676 None:intergenic 25.0%
! ACATCTTATGTATATACAAG+AGG + chr3_2:52439697-52439716 None:intergenic 25.0%
! TGAAAAGAAAAAATTTGCAC+AGG + chr3_2:52440019-52440038 None:intergenic 25.0%
!!! TGCAAATTTTTTCTTTTCAC+AGG - chr3_2:52440020-52440039 Msa0410710:intron 25.0%
!!! GCAAATTTTTTCTTTTCACA+GGG - chr3_2:52440021-52440040 Msa0410710:intron 25.0%
! AATATGATAAATGTTGAGTG+AGG + chr3_2:52440205-52440224 None:intergenic 25.0%
! ATGAAACTGCATCATAAATA+CGG + chr3_2:52440285-52440304 None:intergenic 25.0%
!! AAAGTTTTTGTAATGTGCTT+TGG - chr3_2:52440441-52440460 Msa0410710:intron 25.0%
! AGGAAAAAACAGATTTACAA+AGG + chr3_2:52440467-52440486 None:intergenic 25.0%
! TTTCCTTCATATATTCAAAG+AGG - chr3_2:52440481-52440500 Msa0410710:intron 25.0%
! AAGTTCAAAATTGCAAAAAC+GGG + chr3_2:52440519-52440538 None:intergenic 25.0%
! ATTACATATGAGACAAGTAA+CGG + chr3_2:52440812-52440831 None:intergenic 25.0%
! AAACAAAGGAAATTTCATCA+AGG + chr3_2:52440838-52440857 None:intergenic 25.0%
! GCAAACTGTAAAATAAACAA+AGG + chr3_2:52440852-52440871 None:intergenic 25.0%
! TCTAATAATGTTGAACTTAC+AGG - chr3_2:52440876-52440895 Msa0410710:intron 25.0%
! AATATATACTCAACTAGAGT+CGG + chr3_2:52441045-52441064 None:intergenic 25.0%
! GCTAAATTACATAACGATAT+TGG + chr3_2:52441097-52441116 None:intergenic 25.0%
!! AACAATTATGCTTTAGTTCA+TGG + chr3_2:52441132-52441151 None:intergenic 25.0%
TGCTGAAACTTGAATTCTAA+CGG + chr3_2:52436130-52436149 None:intergenic 30.0%
GAAGACATTAATACTCTAAG+GGG + chr3_2:52436243-52436262 None:intergenic 30.0%
CAGAAGACATTAATACTCTA+AGG + chr3_2:52436245-52436264 None:intergenic 30.0%
! ATTTGAGACATTGATGGTAT+TGG - chr3_2:52436426-52436445 Msa0410710:three_prime_UTR 30.0%
!! TGGTATTGGTAGAAAGAATA+CGG - chr3_2:52436440-52436459 Msa0410710:three_prime_UTR 30.0%
GTTATGAATAATCTGTTGCA+TGG - chr3_2:52436470-52436489 Msa0410710:three_prime_UTR 30.0%
AATGTTTAGGAGTAAAGTTG+AGG - chr3_2:52436639-52436658 Msa0410710:CDS 30.0%
ATGTTTAGGAGTAAAGTTGA+GGG - chr3_2:52436640-52436659 Msa0410710:CDS 30.0%
TAAAATCAAATCCTACCCTT+GGG + chr3_2:52436805-52436824 None:intergenic 30.0%
ATAAAATCAAATCCTACCCT+TGG + chr3_2:52436806-52436825 None:intergenic 30.0%
GATCGTTTATTTACGCAATT+TGG - chr3_2:52436886-52436905 Msa0410710:intron 30.0%
TGAATTAAGGTTTACATCGT+TGG - chr3_2:52437069-52437088 Msa0410710:intron 30.0%
CATTGAATGCCTAATGTATT+TGG - chr3_2:52437142-52437161 Msa0410710:intron 30.0%
GGAGGTAGTATATAATACTA+AGG - chr3_2:52437237-52437256 Msa0410710:intron 30.0%
ATGTATTGAGTACAGTTCAT+AGG + chr3_2:52437435-52437454 None:intergenic 30.0%
ATACATGAACAGTAACCAAA+TGG - chr3_2:52437449-52437468 Msa0410710:CDS 30.0%
TAATTCGGAATTTGATCAAG+AGG + chr3_2:52437517-52437536 None:intergenic 30.0%
TGATCAAATTCCGAATTACT+AGG - chr3_2:52437519-52437538 Msa0410710:intron 30.0%
AAAAAGGAGTCCTAGTAATT+CGG + chr3_2:52437532-52437551 None:intergenic 30.0%
ACTGGTCATGTATGATTTAT+TGG + chr3_2:52437573-52437592 None:intergenic 30.0%
GTCAAAAACACAGTAGTTAT+AGG + chr3_2:52437965-52437984 None:intergenic 30.0%
GGGTAGTTATGAATTATTAG+AGG - chr3_2:52438084-52438103 Msa0410710:CDS 30.0%
ATGTGTGGAGCAAATATTAA+AGG + chr3_2:52438376-52438395 None:intergenic 30.0%
CTGAATAGACAATTCAACAA+AGG + chr3_2:52438485-52438504 None:intergenic 30.0%
CTTTGTTGAATTGTCTATTC+AGG - chr3_2:52438483-52438502 Msa0410710:intron 30.0%
!! TAGAAAAAGTTGATGACTTG+TGG + chr3_2:52438630-52438649 None:intergenic 30.0%
CAAATTATCTCCAAATGATG+AGG + chr3_2:52438868-52438887 None:intergenic 30.0%
CTCATCATTTGGAGATAATT+TGG - chr3_2:52438866-52438885 Msa0410710:intron 30.0%
TTCAAGAACCAAATTGACTA+AGG + chr3_2:52439143-52439162 None:intergenic 30.0%
GATTAGCGAAAGATATATCT+GGG + chr3_2:52439193-52439212 None:intergenic 30.0%
TGATTAGCGAAAGATATATC+TGG + chr3_2:52439194-52439213 None:intergenic 30.0%
! CATGTGATTTTGTCTATAGT+GGG - chr3_2:52439389-52439408 Msa0410710:intron 30.0%
AAGATTGTAAACAAATAGCC+GGG + chr3_2:52439558-52439577 None:intergenic 30.0%
CAAGATTGTAAACAAATAGC+CGG + chr3_2:52439559-52439578 None:intergenic 30.0%
CACACTACAAGAAAAGTTAT+AGG + chr3_2:52439658-52439677 None:intergenic 30.0%
AAATGATAGACAAATCCAGA+AGG + chr3_2:52439969-52439988 None:intergenic 30.0%
ATGTCTTTCCCATTGATAAA+AGG + chr3_2:52440048-52440067 None:intergenic 30.0%
!! CTTTGGGACATTATAAGAAA+TGG - chr3_2:52440118-52440137 Msa0410710:intron 30.0%
CTTCAAGTAAGACTTCAAAA+AGG + chr3_2:52440163-52440182 None:intergenic 30.0%
!!! CTTTTTGAAGTCTTACTTGA+AGG - chr3_2:52440161-52440180 Msa0410710:intron 30.0%
TGAAACTGCATCATAAATAC+GGG + chr3_2:52440284-52440303 None:intergenic 30.0%
TGTCTATGCTTAAAGATCAT+AGG - chr3_2:52440350-52440369 Msa0410710:intron 30.0%
TTAGAAGAAACTCCAAATTC+AGG + chr3_2:52440409-52440428 None:intergenic 30.0%
AAGCCTCTTTGAATATATGA+AGG + chr3_2:52440487-52440506 None:intergenic 30.0%
! ATTTGTAAGGAAAAAGTGTG+AGG + chr3_2:52440576-52440595 None:intergenic 30.0%
CTTGTGTCATACTATTTGTA+AGG + chr3_2:52440589-52440608 None:intergenic 30.0%
!!! CACAAAAGTTGGTATTTTAC+CGG + chr3_2:52440663-52440682 None:intergenic 30.0%
AAAGAAAAGAGTAGAATGAG+TGG + chr3_2:52440994-52441013 None:intergenic 30.0%
TAGTTCATGGTGAATAATCA+AGG + chr3_2:52441119-52441138 None:intergenic 30.0%
CCACATATTGTAACATGTTA+GGG - chr3_2:52441165-52441184 Msa0410710:intron 30.0%
AAATAATTGTGTGACGCTAT+GGG - chr3_2:52441281-52441300 Msa0410710:CDS 30.0%
TACATTTGAACCGATATTGA+GGG + chr3_2:52441353-52441372 None:intergenic 30.0%
!! GTGGTTGTGTTTTTGTTATG+TGG + chr3_2:52436051-52436070 None:intergenic 35.0%
TTTGTAGGAGTAAGAGATGA+AGG + chr3_2:52436078-52436097 None:intergenic 35.0%
TGAAACTTGAATTCTAACGG+TGG + chr3_2:52436127-52436146 None:intergenic 35.0%
AATACTGAAACCGTTGTTGA+AGG + chr3_2:52436217-52436236 None:intergenic 35.0%
TTACAGTCTCCAATCTTGTT+AGG + chr3_2:52436318-52436337 None:intergenic 35.0%
AATGATATTGAGAATGCACG+TGG + chr3_2:52436701-52436720 None:intergenic 35.0%
TGCTTATAAATGTGACTGGA+GGG + chr3_2:52437103-52437122 None:intergenic 35.0%
TTGCTTATAAATGTGACTGG+AGG + chr3_2:52437104-52437123 None:intergenic 35.0%
GGAATTTGATCAAGAGGTAA+GGG + chr3_2:52437511-52437530 None:intergenic 35.0%
! TTACTAGGACTCCTTTTTCT+TGG - chr3_2:52437534-52437553 Msa0410710:intron 35.0%
! TTGCTTTAGTTCATGGATGT+AGG - chr3_2:52437741-52437760 Msa0410710:intron 35.0%
TAGTTCATGGATGTAGGAAA+TGG - chr3_2:52437747-52437766 Msa0410710:intron 35.0%
ACTCTATGATTCCAATACAG+AGG + chr3_2:52437784-52437803 None:intergenic 35.0%
! TGCCTTAAAATCTGCTGTTT+GGG - chr3_2:52437875-52437894 Msa0410710:intron 35.0%
AGAAAATAGAACCTAGAGAG+AGG - chr3_2:52438001-52438020 Msa0410710:intron 35.0%
GAAAATAGAACCTAGAGAGA+GGG - chr3_2:52438002-52438021 Msa0410710:intron 35.0%
AGAACTAACTAGAGAAAGGT+TGG + chr3_2:52438116-52438135 None:intergenic 35.0%
CTCAAGAACTAACTAGAGAA+AGG + chr3_2:52438120-52438139 None:intergenic 35.0%
TTGAGTGATTCATCTTTGAG+TGG - chr3_2:52438135-52438154 Msa0410710:intron 35.0%
TGAGTGATTCATCTTTGAGT+GGG - chr3_2:52438136-52438155 Msa0410710:intron 35.0%
AGAAATTGGGGACAATTTCT+TGG - chr3_2:52438176-52438195 Msa0410710:intron 35.0%
!! TGTGGATTTGCTATACATCT+AGG - chr3_2:52438293-52438312 Msa0410710:intron 35.0%
! TAGGTTGCTAGATTTCCTTT+TGG - chr3_2:52438312-52438331 Msa0410710:intron 35.0%
CAGCATTTGAGTCTTAAACT+TGG - chr3_2:52438429-52438448 Msa0410710:intron 35.0%
TTTACCTTATGAGCCGAAAT+TGG - chr3_2:52438548-52438567 Msa0410710:intron 35.0%
TGTGGTCTGTAAGTGAAAAA+TGG + chr3_2:52438612-52438631 None:intergenic 35.0%
ATTACAGGAACTTTACCTTC+AGG + chr3_2:52438717-52438736 None:intergenic 35.0%
GTTCCTGTAATAAACTTCGA+CGG - chr3_2:52438726-52438745 Msa0410710:CDS 35.0%
TTCCTGTAATAAACTTCGAC+GGG - chr3_2:52438727-52438746 Msa0410710:CDS 35.0%
! GTAGTGGGGAAAAACATAAA+GGG + chr3_2:52439008-52439027 None:intergenic 35.0%
! AGTAGTGGGGAAAAACATAA+AGG + chr3_2:52439009-52439028 None:intergenic 35.0%
AAAATCTGACATGCAGTAGT+GGG + chr3_2:52439023-52439042 None:intergenic 35.0%
AAAAATCTGACATGCAGTAG+TGG + chr3_2:52439024-52439043 None:intergenic 35.0%
GTGACATCTGATAGATTCAA+GGG + chr3_2:52439070-52439089 None:intergenic 35.0%
AGTGACATCTGATAGATTCA+AGG + chr3_2:52439071-52439090 None:intergenic 35.0%
GCTAACAAAAGAAACTCACA+TGG - chr3_2:52439231-52439250 Msa0410710:intron 35.0%
! GCATGTGATTTTGTCTATAG+TGG - chr3_2:52439388-52439407 Msa0410710:intron 35.0%
AAAAGCAAAGATCCCAATGA+CGG - chr3_2:52439445-52439464 Msa0410710:intron 35.0%
ATAGCCGGGACAAAAATATA+AGG + chr3_2:52439544-52439563 None:intergenic 35.0%
! CTTTTCCTGCATTATTGTCA+TGG - chr3_2:52439630-52439649 Msa0410710:intron 35.0%
! TTTTCTTATCTCGATCCTTC+TGG - chr3_2:52439951-52439970 Msa0410710:intron 35.0%
ATCTCCAAATGGTATAGCTT+TGG + chr3_2:52440096-52440115 None:intergenic 35.0%
ATACCATTTGGAGATTGCTT+TGG - chr3_2:52440101-52440120 Msa0410710:intron 35.0%
TACCATTTGGAGATTGCTTT+GGG - chr3_2:52440102-52440121 Msa0410710:intron 35.0%
ATGATAAATGTTGAGTGAGG+AGG + chr3_2:52440202-52440221 None:intergenic 35.0%
!! AAAATTGCAAAAACGGGCTA+GGG + chr3_2:52440513-52440532 None:intergenic 35.0%
ACTACTCAAATGTTTCCGTA+AGG - chr3_2:52440545-52440564 Msa0410710:intron 35.0%
CTACTCAAATGTTTCCGTAA+GGG - chr3_2:52440546-52440565 Msa0410710:intron 35.0%
TACTCAAATGTTTCCGTAAG+GGG - chr3_2:52440547-52440566 Msa0410710:intron 35.0%
TTCGGTAATTGCACAAAAGT+TGG + chr3_2:52440674-52440693 None:intergenic 35.0%
! ACTTACAGGAAATTTTCTCG+AGG - chr3_2:52440890-52440909 Msa0410710:intron 35.0%
! CTTACAGGAAATTTTCTCGA+GGG - chr3_2:52440891-52440910 Msa0410710:intron 35.0%
TATCATCAACCCTCTACTTT+AGG + chr3_2:52440970-52440989 None:intergenic 35.0%
ATTGGTATTCAACTCTACAG+TGG + chr3_2:52441079-52441098 None:intergenic 35.0%
AACATGTTACAATATGTGGC+CGG + chr3_2:52441164-52441183 None:intergenic 35.0%
GCCACATATTGTAACATGTT+AGG - chr3_2:52441164-52441183 Msa0410710:intron 35.0%
CCCTAACATGTTACAATATG+TGG + chr3_2:52441168-52441187 None:intergenic 35.0%
TATTGTAACATGTTAGGGAG+AGG - chr3_2:52441170-52441189 Msa0410710:intron 35.0%
GAAATAATTGTGTGACGCTA+TGG - chr3_2:52441280-52441299 Msa0410710:CDS 35.0%
AATAATTGTGTGACGCTATG+GGG - chr3_2:52441282-52441301 Msa0410710:CDS 35.0%
TTTATTAAGACCAAGGTCAG+TGG + chr3_2:52441315-52441334 None:intergenic 35.0%
!! CTGACCTTGGTCTTAATAAA+AGG - chr3_2:52441315-52441334 Msa0410710:CDS 35.0%
GCTTTCTTTACCCTCAATAT+CGG - chr3_2:52441340-52441359 Msa0410710:CDS 35.0%
GTACATTTGAACCGATATTG+AGG + chr3_2:52441354-52441373 None:intergenic 35.0%
!! TGAACGTCGTGAAGTTTTAT+CGG - chr3_2:52441485-52441504 Msa0410710:CDS 35.0%
AGTAAGAGATGAAGGTGATG+TGG + chr3_2:52436070-52436089 None:intergenic 40.0%
GTTTGTGTGCGTTTGTTTGT+AGG + chr3_2:52436093-52436112 None:intergenic 40.0%
TGAATTCTAACGGTGGACAT+TGG + chr3_2:52436120-52436139 None:intergenic 40.0%
GTTGAAGGAGCTAGTTGAAA+CGG + chr3_2:52436202-52436221 None:intergenic 40.0%
TCAACTAGCTCCTTCAACAA+CGG - chr3_2:52436204-52436223 Msa0410710:three_prime_UTR 40.0%
GCTTTAACAGCAACTTCCAA+TGG + chr3_2:52436282-52436301 None:intergenic 40.0%
CTTACCACTCCTAACAAGAT+TGG - chr3_2:52436306-52436325 Msa0410710:three_prime_UTR 40.0%
GTAGAAAGAATACGGTAGTG+TGG - chr3_2:52436448-52436467 Msa0410710:three_prime_UTR 40.0%
! TTGAAGGTGTGTCTTGTATC+CGG - chr3_2:52436503-52436522 Msa0410710:three_prime_UTR 40.0%
!! TGGTATCGGTACCATCATAA+GGG + chr3_2:52436778-52436797 None:intergenic 40.0%
!! ATGGTATCGGTACCATCATA+AGG + chr3_2:52436779-52436798 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr3_2:52437219-52437238 Msa0410710:intron 40.0%
TCAGGGATGTTGTTGTAATC+TGG + chr3_2:52437264-52437283 None:intergenic 40.0%
AGTTCATAGGCACAAAAGAG+GGG + chr3_2:52437422-52437441 None:intergenic 40.0%
CAGTTCATAGGCACAAAAGA+GGG + chr3_2:52437423-52437442 None:intergenic 40.0%
ACAGTTCATAGGCACAAAAG+AGG + chr3_2:52437424-52437443 None:intergenic 40.0%
ACAGGAGCTCATTAACCATT+TGG + chr3_2:52437467-52437486 None:intergenic 40.0%
CGGAATTTGATCAAGAGGTA+AGG + chr3_2:52437512-52437531 None:intergenic 40.0%
! GACTCCTTTTTCTTGGAACA+GGG - chr3_2:52437541-52437560 Msa0410710:intron 40.0%
CAAACCCTGTTCCAAGAAAA+AGG + chr3_2:52437548-52437567 None:intergenic 40.0%
! CTTTTTCTTGGAACAGGGTT+TGG - chr3_2:52437546-52437565 Msa0410710:intron 40.0%
CAATACAACAGCCTCTGTAT+TGG - chr3_2:52437770-52437789 Msa0410710:intron 40.0%
GTGCCTTAAAATCTGCTGTT+TGG - chr3_2:52437874-52437893 Msa0410710:intron 40.0%
! GCCTTAAAATCTGCTGTTTG+GGG - chr3_2:52437876-52437895 Msa0410710:intron 40.0%
! ACCCCAAACAGCAGATTTTA+AGG + chr3_2:52437880-52437899 None:intergenic 40.0%
AGAGAGGAAAGGAGAGAAAT+TGG - chr3_2:52438162-52438181 Msa0410710:intron 40.0%
GAGAGGAAAGGAGAGAAATT+GGG - chr3_2:52438163-52438182 Msa0410710:intron 40.0%
AGAGGAAAGGAGAGAAATTG+GGG - chr3_2:52438164-52438183 Msa0410710:intron 40.0%
GAGACTTTGTTAACCCAGTT+CGG + chr3_2:52438231-52438250 None:intergenic 40.0%
AGCAACAGCAATCAACCAAA+AGG + chr3_2:52438330-52438349 None:intergenic 40.0%
! TTTGGTTGATTGCTGTTGCT+TGG - chr3_2:52438330-52438349 Msa0410710:intron 40.0%
TTCCTTGAAATCAGTCCTGA+AGG - chr3_2:52438699-52438718 Msa0410710:intron 40.0%
! TACCTTCAGGACTGATTTCA+AGG + chr3_2:52438704-52438723 None:intergenic 40.0%
TTCCCGTCGAAGTTTATTAC+AGG + chr3_2:52438732-52438751 None:intergenic 40.0%
TAATAAACTTCGACGGGAAG+TGG - chr3_2:52438733-52438752 Msa0410710:CDS 40.0%
AATAAACTTCGACGGGAAGT+GGG - chr3_2:52438734-52438753 Msa0410710:CDS 40.0%
AAATCTGACATGCAGTAGTG+GGG + chr3_2:52439022-52439041 None:intergenic 40.0%
TCTGGGAATCAAACTGACTA+AGG + chr3_2:52439176-52439195 None:intergenic 40.0%
TTCCTTGAGGTAATCGTTGA+AGG + chr3_2:52439503-52439522 None:intergenic 40.0%
! AGGGTCATACATTTTCCTTG+AGG + chr3_2:52439516-52439535 None:intergenic 40.0%
! TCACAGGGTCCTTTTATCAA+TGG - chr3_2:52440036-52440055 Msa0410710:intron 40.0%
! CACAGGGTCCTTTTATCAAT+GGG - chr3_2:52440037-52440056 Msa0410710:intron 40.0%
CAATGGGAAAGACATATCTG+CGG - chr3_2:52440053-52440072 Msa0410710:intron 40.0%
!! ATAGCTTTGGTCCTAGTGAT+AGG + chr3_2:52440083-52440102 None:intergenic 40.0%
AGGACCAAAGCTATACCATT+TGG - chr3_2:52440089-52440108 Msa0410710:intron 40.0%
TTCAAAAAGGTCAGCGAATC+AGG + chr3_2:52440150-52440169 None:intergenic 40.0%
TCAATAGGGAGACCTGAATT+TGG - chr3_2:52440394-52440413 Msa0410710:intron 40.0%
! CAAAATTGCAAAAACGGGCT+AGG + chr3_2:52440514-52440533 None:intergenic 40.0%
CAATCGGTATTTGCACAGAA+GGG + chr3_2:52440612-52440631 None:intergenic 40.0%
! GTGCAAATACCGATTGCTAA+AGG - chr3_2:52440616-52440635 Msa0410710:intron 40.0%
! TGAAGCACTCCTTTAGCAAT+CGG + chr3_2:52440628-52440647 None:intergenic 40.0%
!! AGTTGGTATTTTACCGGCTA+CGG + chr3_2:52440657-52440676 None:intergenic 40.0%
CCAACAACTAGTGAAAAGGA+GGG + chr3_2:52440756-52440775 None:intergenic 40.0%
AACAGATCATCTAGGGATCA+GGG + chr3_2:52440780-52440799 None:intergenic 40.0%
CACAGACAACAGATCATCTA+GGG + chr3_2:52440787-52440806 None:intergenic 40.0%
ACACAGACAACAGATCATCT+AGG + chr3_2:52440788-52440807 None:intergenic 40.0%
! TATAGGGCAGCACTAGTTTA+AGG + chr3_2:52441257-52441276 None:intergenic 40.0%
! GCTGCCTTTTATTAAGACCA+AGG + chr3_2:52441322-52441341 None:intergenic 40.0%
TCGGTAACGAAGGTGGTTAA+CGG + chr3_2:52436169-52436188 None:intergenic 45.0%
GTCTCCAATCTTGTTAGGAG+TGG + chr3_2:52436313-52436332 None:intergenic 45.0%
GCATGGACACTTCTGATTGA+AGG - chr3_2:52436487-52436506 Msa0410710:three_prime_UTR 45.0%
TACCGATACCATCTACCCAA+GGG - chr3_2:52436787-52436806 Msa0410710:intron 45.0%
TACCCTTGGGTAGATGGTAT+CGG + chr3_2:52436792-52436811 None:intergenic 45.0%
AAATCCTACCCTTGGGTAGA+TGG + chr3_2:52436798-52436817 None:intergenic 45.0%
TTTGGGCCAAATGCAAGGAA+GGG - chr3_2:52437355-52437374 Msa0410710:intron 45.0%
CTTTCACCCTTCCTTGCATT+TGG + chr3_2:52437364-52437383 None:intergenic 45.0%
CAAATGCAAGGAAGGGTGAA+AGG - chr3_2:52437362-52437381 Msa0410710:intron 45.0%
TGGTTAATGAGCTCCTGTCA+AGG - chr3_2:52437469-52437488 Msa0410710:CDS 45.0%
TGGTCATGTATGACCTTGAC+AGG + chr3_2:52437485-52437504 None:intergenic 45.0%
! GGACTCCTTTTTCTTGGAAC+AGG - chr3_2:52437540-52437559 Msa0410710:intron 45.0%
! AATCTGCTGTTTGGGGTTTC+TGG - chr3_2:52437883-52437902 Msa0410710:intron 45.0%
AGGGAACACGGAAAAACCTA+GGG - chr3_2:52438021-52438040 Msa0410710:intron 45.0%
!! TTCGAGTGTTGAGAGCTCTT+GGG - chr3_2:52438044-52438063 Msa0410710:CDS 45.0%
!! ATCTTTGAGTGGGTTGAGAG+AGG - chr3_2:52438146-52438165 Msa0410710:intron 45.0%
ACCCAGACGTAGGTGAATTT+GGG - chr3_2:52438205-52438224 Msa0410710:intron 45.0%
!! TGCTGTTGCTTGGACTGTTT+TGG - chr3_2:52438340-52438359 Msa0410710:intron 45.0%
TGCTCCACACATCATTGTCT+TGG - chr3_2:52438384-52438403 Msa0410710:intron 45.0%
CACACCAAGACAATGATGTG+TGG + chr3_2:52438391-52438410 None:intergenic 45.0%
! ATTCAGGCCCTTTTAGCCAA+AGG - chr3_2:52438499-52438518 Msa0410710:intron 45.0%
! TTCAGGCCCTTTTAGCCAAA+GGG - chr3_2:52438500-52438519 Msa0410710:intron 45.0%
GCAACACCCTTTGGCTAAAA+GGG + chr3_2:52438509-52438528 None:intergenic 45.0%
AGCAACACCCTTTGGCTAAA+AGG + chr3_2:52438510-52438529 None:intergenic 45.0%
ACCTTATGAGCCGAAATTGG+TGG - chr3_2:52438551-52438570 Msa0410710:intron 45.0%
TCCACCAATTTCGGCTCATA+AGG + chr3_2:52438555-52438574 None:intergenic 45.0%
GGACAAGCAAATCACCATTC+TGG + chr3_2:52438591-52438610 None:intergenic 45.0%
GCTTGTTCTGTTCCGTCATT+GGG + chr3_2:52439460-52439479 None:intergenic 45.0%
TGCTTGTTCTGTTCCGTCAT+TGG + chr3_2:52439461-52439480 None:intergenic 45.0%
CTCCTTCAACGATTACCTCA+AGG - chr3_2:52439498-52439517 Msa0410710:intron 45.0%
GCAGGAAAAGATGTAATGCC+AGG + chr3_2:52439620-52439639 None:intergenic 45.0%
AGGGTCCATGACAATAATGC+AGG + chr3_2:52439638-52439657 None:intergenic 45.0%
GTCCCAAAGCAATCTCCAAA+TGG + chr3_2:52440107-52440126 None:intergenic 45.0%
AAAGGTCAGCGAATCAGGTA+CGG + chr3_2:52440145-52440164 None:intergenic 45.0%
GCAATCGGTATTTGCACAGA+AGG + chr3_2:52440613-52440632 None:intergenic 45.0%
TGCTTCATAACAACCGTAGC+CGG - chr3_2:52440641-52440660 Msa0410710:intron 45.0%
! CCCTCCTTTTCACTAGTTGT+TGG - chr3_2:52440753-52440772 Msa0410710:intron 45.0%
GCCAACAACTAGTGAAAAGG+AGG + chr3_2:52440757-52440776 None:intergenic 45.0%
ACAGATCATCTAGGGATCAG+GGG + chr3_2:52440779-52440798 None:intergenic 45.0%
CAACAGATCATCTAGGGATC+AGG + chr3_2:52440781-52440800 None:intergenic 45.0%
CAACCTTCAATGACATCCTC+CGG + chr3_2:52440943-52440962 None:intergenic 45.0%
TGCTCTACATGAAGCCTTCA+TGG + chr3_2:52441196-52441215 None:intergenic 45.0%
GTAACGAAGGTGGTTAACGG+TGG + chr3_2:52436166-52436185 None:intergenic 50.0%
TTGAAACGGCGTAGCTTGGT+CGG + chr3_2:52436188-52436207 None:intergenic 50.0%
CTAGTTGAAACGGCGTAGCT+TGG + chr3_2:52436192-52436211 None:intergenic 50.0%
ACTTCCAATGGCTCAGAAGG+AGG + chr3_2:52436270-52436289 None:intergenic 50.0%
GCAACTTCCAATGGCTCAGA+AGG + chr3_2:52436273-52436292 None:intergenic 50.0%
! GTACCGATACCATCTACCCA+AGG - chr3_2:52436786-52436805 Msa0410710:intron 50.0%
GATACCATCTACCCAAGGGT+AGG - chr3_2:52436791-52436810 Msa0410710:intron 50.0%
AACATCCCTGAAACGTACCG+CGG - chr3_2:52437273-52437292 Msa0410710:intron 50.0%
TTTGTTGCAGGGAGCGACTA+GGG + chr3_2:52437316-52437335 None:intergenic 50.0%
! AAGCCCGACTGTTTGTTGCA+GGG + chr3_2:52437327-52437346 None:intergenic 50.0%
! TAAGCCCGACTGTTTGTTGC+AGG + chr3_2:52437328-52437347 None:intergenic 50.0%
GTTTGGGCCAAATGCAAGGA+AGG - chr3_2:52437354-52437373 Msa0410710:intron 50.0%
TAGGCACAAAAGAGGGGCAA+GGG + chr3_2:52437416-52437435 None:intergenic 50.0%
ATAGGCACAAAAGAGGGGCA+AGG + chr3_2:52437417-52437436 None:intergenic 50.0%
TGATCAAGAGGTAAGGGAGC+TGG + chr3_2:52437505-52437524 None:intergenic 50.0%
GAACCTAGAGAGAGGGAACA+CGG - chr3_2:52438009-52438028 Msa0410710:intron 50.0%
TTTCCGTGTTCCCTCTCTCT+AGG + chr3_2:52438015-52438034 None:intergenic 50.0%
GAGGGAACACGGAAAAACCT+AGG - chr3_2:52438020-52438039 Msa0410710:intron 50.0%
!! GTTCGAGTGTTGAGAGCTCT+TGG - chr3_2:52438043-52438062 Msa0410710:CDS 50.0%
!! TGAGTGGGTTGAGAGAGGAA+AGG - chr3_2:52438151-52438170 Msa0410710:intron 50.0%
CACCCAGACGTAGGTGAATT+TGG - chr3_2:52438204-52438223 Msa0410710:intron 50.0%
GCCCAAATTCACCTACGTCT+GGG + chr3_2:52438209-52438228 None:intergenic 50.0%
TAGGTGAATTTGGGCCGAAC+TGG - chr3_2:52438214-52438233 Msa0410710:intron 50.0%
AGGTGAATTTGGGCCGAACT+GGG - chr3_2:52438215-52438234 Msa0410710:intron 50.0%
! GAAGTATCCTAGCCCACCAT+TGG - chr3_2:52438794-52438813 Msa0410710:CDS 50.0%
!!! TTTTCAGGTGGGGTCACCAA+TGG + chr3_2:52438813-52438832 None:intergenic 50.0%
! ATTGGTGACCCCACCTGAAA+AGG - chr3_2:52438812-52438831 Msa0410710:CDS 50.0%
!!! ACGCTGTAGCCTTTTCAGGT+GGG + chr3_2:52438824-52438843 None:intergenic 50.0%
!! TACGCTGTAGCCTTTTCAGG+TGG + chr3_2:52438825-52438844 None:intergenic 50.0%
! GCATACGCTGTAGCCTTTTC+AGG + chr3_2:52438828-52438847 None:intergenic 50.0%
AGGTCTCTCAATCTCTGACC+TGG - chr3_2:52439599-52439618 Msa0410710:intron 50.0%
TGTAGTGTGCATCGCTTAGC+TGG - chr3_2:52439669-52439688 Msa0410710:intron 50.0%
AAGTGTGAGGAAGCCCCTTA+CGG + chr3_2:52440563-52440582 None:intergenic 50.0%
GGGGCCAACAACTAGTGAAA+AGG + chr3_2:52440760-52440779 None:intergenic 50.0%
CATTAACACACGTGCACAGC+CGG - chr3_2:52440921-52440940 Msa0410710:intron 50.0%
CGGAGGATGTCATTGAAGGT+TGG - chr3_2:52440941-52440960 Msa0410710:intron 50.0%
AGGTTGGCGTCCTAAAGTAG+AGG - chr3_2:52440957-52440976 Msa0410710:intron 50.0%
GGTTGGCGTCCTAAAGTAGA+GGG - chr3_2:52440958-52440977 Msa0410710:intron 50.0%
ATGTTAGGGAGAGGCCATGA+AGG - chr3_2:52441179-52441198 Msa0410710:intron 50.0%
ACGAAGGTGGTTAACGGTGG+CGG + chr3_2:52436163-52436182 None:intergenic 55.0%
AGCTTGGTCGGTAACGAAGG+TGG + chr3_2:52436176-52436195 None:intergenic 55.0%
CGTAGCTTGGTCGGTAACGA+AGG + chr3_2:52436179-52436198 None:intergenic 55.0%
TGCTCCTCCTTCTGAGCCAT+TGG - chr3_2:52436263-52436282 Msa0410710:intron 55.0%
! CGAGGTGTCAGTTTCAGCGT+CGG - chr3_2:52436573-52436592 Msa0410710:exon 55.0%
!! CAGTTTCAGCGTCGGTGTGT+CGG - chr3_2:52436581-52436600 Msa0410710:CDS 55.0%
ACATCCCTGAAACGTACCGC+GGG - chr3_2:52437274-52437293 Msa0410710:intron 55.0%
! GTTTGTTGCAGGGAGCGACT+AGG + chr3_2:52437317-52437336 None:intergenic 55.0%
CGCTCCCTGCAACAAACAGT+CGG - chr3_2:52437320-52437339 Msa0410710:intron 55.0%
GCTCCCTGCAACAAACAGTC+GGG - chr3_2:52437321-52437340 Msa0410710:intron 55.0%
AGTCGGGCTTAACGCACGTT+TGG - chr3_2:52437337-52437356 Msa0410710:intron 55.0%
GTCGGGCTTAACGCACGTTT+GGG - chr3_2:52437338-52437357 Msa0410710:intron 55.0%
GCACGTTTGGGCCAAATGCA+AGG - chr3_2:52437350-52437369 Msa0410710:intron 55.0%
! CTGCTGTTTGGGGTTTCTGG+TGG - chr3_2:52437886-52437905 Msa0410710:intron 55.0%
GCTCTCAACACTCGAACCCT+AGG + chr3_2:52438040-52438059 None:intergenic 55.0%
AGCTCTTGGGCGAGGTTCTA+GGG - chr3_2:52438057-52438076 Msa0410710:CDS 55.0%
TTGGTCACTCACCCAGACGT+AGG - chr3_2:52438195-52438214 Msa0410710:intron 55.0%
GGCCCAAATTCACCTACGTC+TGG + chr3_2:52438210-52438229 None:intergenic 55.0%
CCAGTGTCAGCAACACCCTT+TGG + chr3_2:52438518-52438537 None:intergenic 55.0%
!! CCAAAGGGTGTTGCTGACAC+TGG - chr3_2:52438515-52438534 Msa0410710:intron 55.0%
!! AAGGGTGTTGCTGACACTGG+AGG - chr3_2:52438518-52438537 Msa0410710:intron 55.0%
!!! CGCTGTAGCCTTTTCAGGTG+GGG + chr3_2:52438823-52438842 None:intergenic 55.0%
TCTGCGGCTGACCTATCACT+AGG - chr3_2:52440069-52440088 Msa0410710:intron 55.0%
CAGCCGGAGGATGTCATTGA+AGG - chr3_2:52440937-52440956 Msa0410710:intron 55.0%
GTCTCGAACGCGACACTTGC+CGG + chr3_2:52436525-52436544 None:intergenic 60.0%
CATCCCTGAAACGTACCGCG+GGG - chr3_2:52437275-52437294 Msa0410710:intron 60.0%
ATCCCTGAAACGTACCGCGG+GGG - chr3_2:52437276-52437295 Msa0410710:intron 60.0%
GTGTTGAGAGCTCTTGGGCG+AGG - chr3_2:52438049-52438068 Msa0410710:CDS 60.0%
GAGCTCTTGGGCGAGGTTCT+AGG - chr3_2:52438056-52438075 Msa0410710:CDS 60.0%
CAGGTGGGGTCACCAATGGT+GGG + chr3_2:52438809-52438828 None:intergenic 60.0%
TCAGGTGGGGTCACCAATGG+TGG + chr3_2:52438810-52438829 None:intergenic 60.0%
TAACACACGTGCACAGCCGG+AGG - chr3_2:52440924-52440943 Msa0410710:intron 60.0%
! GGGTGATGTGCCACTGACCT+TGG - chr3_2:52441302-52441321 Msa0410710:CDS 60.0%
AGCCCCCGCGGTACGTTTCA+GGG + chr3_2:52437281-52437300 None:intergenic 65.0%
TAGCCCCCGCGGTACGTTTC+AGG + chr3_2:52437282-52437301 None:intergenic 65.0%
AGGGAGCGACTAGGGTGCAG+GGG + chr3_2:52437308-52437327 None:intergenic 65.0%
CAGGGAGCGACTAGGGTGCA+GGG + chr3_2:52437309-52437328 None:intergenic 65.0%
!! TGGGCGAGGTTCTAGGGCCT+TGG - chr3_2:52438063-52438082 Msa0410710:CDS 65.0%
!! GGGCGAGGTTCTAGGGCCTT+GGG - chr3_2:52438064-52438083 Msa0410710:CDS 65.0%
!! GGGGTCACCAATGGTGGGCT+AGG + chr3_2:52438804-52438823 None:intergenic 65.0%
TGCAGGGGAGATAGCCCCCG+CGG + chr3_2:52437293-52437312 None:intergenic 70.0%
GCAGGGAGCGACTAGGGTGC+AGG + chr3_2:52437310-52437329 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 52436019 52441539 52436019 ID=Msa0410710;Name=Msa0410710
chr3_2 mRNA 52436019 52441539 52436019 ID=Msa0410710-mRNA-1;Parent=Msa0410710;Name=Msa0410710-mRNA-1;_AED=0.14;_eAED=0.14;_QI=14|1|1|1|0.83|0.71|7|518|293
chr3_2 exon 52436019 52436257 52436019 ID=Msa0410710-mRNA-1:exon:10416;Parent=Msa0410710-mRNA-1
chr3_2 exon 52436295 52436660 52436295 ID=Msa0410710-mRNA-1:exon:10415;Parent=Msa0410710-mRNA-1
chr3_2 exon 52437376 52437516 52437376 ID=Msa0410710-mRNA-1:exon:10414;Parent=Msa0410710-mRNA-1
chr3_2 exon 52438033 52438150 52438033 ID=Msa0410710-mRNA-1:exon:10413;Parent=Msa0410710-mRNA-1
chr3_2 exon 52438717 52438860 52438717 ID=Msa0410710-mRNA-1:exon:10412;Parent=Msa0410710-mRNA-1
chr3_2 exon 52438963 52439053 52438963 ID=Msa0410710-mRNA-1:exon:10411;Parent=Msa0410710-mRNA-1
chr3_2 exon 52441225 52441539 52441225 ID=Msa0410710-mRNA-1:exon:10410;Parent=Msa0410710-mRNA-1
chr3_2 five_prime_UTR 52441526 52441539 52441526 ID=Msa0410710-mRNA-1:five_prime_utr;Parent=Msa0410710-mRNA-1
chr3_2 CDS 52441225 52441525 52441225 ID=Msa0410710-mRNA-1:cds;Parent=Msa0410710-mRNA-1
chr3_2 CDS 52438963 52439053 52438963 ID=Msa0410710-mRNA-1:cds;Parent=Msa0410710-mRNA-1
chr3_2 CDS 52438717 52438860 52438717 ID=Msa0410710-mRNA-1:cds;Parent=Msa0410710-mRNA-1
chr3_2 CDS 52438033 52438150 52438033 ID=Msa0410710-mRNA-1:cds;Parent=Msa0410710-mRNA-1
chr3_2 CDS 52437376 52437516 52437376 ID=Msa0410710-mRNA-1:cds;Parent=Msa0410710-mRNA-1
chr3_2 CDS 52436574 52436660 52436574 ID=Msa0410710-mRNA-1:cds;Parent=Msa0410710-mRNA-1
chr3_2 three_prime_UTR 52436295 52436573 52436295 ID=Msa0410710-mRNA-1:three_prime_utr;Parent=Msa0410710-mRNA-1
chr3_2 three_prime_UTR 52436019 52436257 52436019 ID=Msa0410710-mRNA-1:three_prime_utr;Parent=Msa0410710-mRNA-1
Gene Sequence

>Msa0410710

ATGACACATAAACATCCACATAACAAAAACACAACCACATCACCTTCATCTCTTACTCCTACAAACAAACGCACACAAACGTTACCAATGTCCACCGTTAGAATTCAAGTTTCAGCATGCGCTCTTTCCGCCACCGTTAACCACCTTCGTTACCGACCAAGCTACGCCGTTTCAACTAGCTCCTTCAACAACGGTTTCAGTATTAAACCCCTTAGAGTATTAATGTCTTCTGCTCCTCCTTCTGAGCCATTGGAAGTTGCTGTTAAAGCTTCTCTTACCACTCCTAACAAGATTGGAGACTGCCCTTTTAGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATTTACCTTATGAGCCGAAATTGGTGGATTTAAGAAACAAACCAGAATGGTTCCTTGAAATCAGTCCTGAAGGTAAAGTTCCTGTAATAAACTTCGACGGGAAGTGGGTTGCAGATTCAGATTTAATCACACAAACATTGGAAGAGAAGTATCCTAGCCCACCATTGGTGACCCCACCTGAAAAGGCTACAGCTGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAAAGCAAAGATCCCAATGACGGAACAGAACAAGCATTACTAAATGAACTGAGCTCCTTCAACGATTACCTCAAGGAAAATGGTCCTTTTATCAATGGGAAAGACATATCTGCGGCTGACCTATCACTAGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGACATTATAAGAAATGGACCGTACCTGATTCGCTGACCTTTTTGAAGTCTTACTTGAAGGAAATTTTCTCGAGGGAATCATTCATTAACACACGTGCACAGCCGGAGGATGTCATTGAAGGTTGGCGTCCTAAAGTAGAGGGTTGA

Protein sequence

>Msa0410710

MTHKHPHNKNTTTSPSSLTPTNKRTQTLPMSTVRIQVSACALSATVNHLRYRPSYAVSTSSFNNGFSIKPLRVLMSSAPPSEPLEVAVKASLTTPNKIGDCPFSQRVLLTLEEKHLPYEPKLVDLRNKPEWFLEISPEGKVPVINFDGKWVADSDLITQTLEEKYPSPPLVTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLNELSSFNDYLKENGPFINGKDISAADLSLGPKLYHLEIALGHYKKWTVPDSLTFLKSYLKEIFSRESFINTRAQPEDVIEGWRPKVEG*