AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0791120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791120 MtrunA17_Chr1g0202861 97.885 331 7 0 266 596 26 356 0.0 679
Msa0791120 MtrunA17_Chr1g0202861 70.130 308 70 4 1 286 42 349 4.13e-147 429
Msa0791120 MtrunA17_Chr1g0202871 83.175 315 53 0 282 596 1 315 0.0 558
Msa0791120 MtrunA17_Chr1g0202871 84.416 308 26 4 1 286 1 308 3.04e-178 506
Msa0791120 MtrunA17_Chr1g0202931 80.317 315 62 0 282 596 1 315 0.0 533
Msa0791120 MtrunA17_Chr1g0202931 71.104 308 67 4 1 286 1 308 3.61e-145 422
Msa0791120 MtrunA17_Chr1g0202891 80.317 315 62 0 282 596 1 315 0.0 532
Msa0791120 MtrunA17_Chr1g0202891 71.104 308 67 5 1 286 1 308 8.42e-145 421
Msa0791120 MtrunA17_Chr8g0386971 69.524 315 96 0 282 596 1 315 3.29e-161 463
Msa0791120 MtrunA17_Chr8g0386971 60.065 308 101 4 1 286 1 308 3.40e-119 355
Msa0791120 MtrunA17_Chr6g0470501 69.707 307 90 1 291 594 37 343 3.27e-154 446
Msa0791120 MtrunA17_Chr6g0470501 58.553 304 101 5 10 288 37 340 9.51e-109 330
Msa0791120 MtrunA17_Chr6g0470321 69.055 307 92 1 291 594 18 324 2.24e-151 438
Msa0791120 MtrunA17_Chr6g0470321 57.947 302 102 5 10 286 18 319 4.37e-108 327
Msa0791120 MtrunA17_Chr1g0182541 58.361 305 127 0 289 593 13 317 2.39e-126 374
Msa0791120 MtrunA17_Chr1g0182541 49.515 309 134 4 8 294 13 321 1.18e-92 288
Msa0791120 MtrunA17_Chr7g0262941 58.497 306 126 1 289 593 13 318 9.42e-125 370
Msa0791120 MtrunA17_Chr7g0262941 47.742 310 139 5 8 294 13 322 1.66e-88 277
Msa0791120 MtrunA17_Chr4g0058731 43.910 312 171 2 289 596 24 335 5.80e-80 256
Msa0791120 MtrunA17_Chr4g0058731 37.282 287 158 5 8 274 24 308 6.31e-49 174
Msa0791120 MtrunA17_Chr8g0388831 43.607 305 168 3 289 589 13 317 7.93e-78 249
Msa0791120 MtrunA17_Chr8g0388831 39.649 285 154 5 8 274 13 297 1.53e-53 186
Msa0791120 MtrunA17_Chr3g0117241 49.296 142 69 1 289 427 13 154 1.53e-37 136
Msa0791120 MtrunA17_Chr3g0117241 42.958 142 67 2 8 135 13 154 1.67e-27 108
Msa0791120 MtrunA17_Chr3g0117251 38.235 170 104 1 428 596 1 170 1.46e-34 129
Msa0791120 MtrunA17_Chr3g0117251 33.621 116 76 1 136 250 1 116 2.00e-14 71.6
Msa0791120 MtrunA17_Chr1g0202911 75.676 74 18 0 314 387 4 77 1.73e-30 114
Msa0791120 MtrunA17_Chr1g0202911 63.514 74 27 0 33 106 4 77 1.46e-25 100
Msa0791120 MtrunA17_Chr6g0481311 35.938 256 146 8 311 556 62 309 1.01e-26 112
Msa0791120 MtrunA17_Chr6g0481311 31.507 219 123 6 30 228 62 273 4.01e-16 80.5
Msa0791120 MtrunA17_Chr6g0466681 28.947 266 167 9 306 566 62 310 1.03e-19 90.9
Msa0791120 MtrunA17_Chr6g0466681 26.432 227 142 5 25 235 62 279 3.85e-13 71.2
Msa0791120 MtrunA17_Chr2g0317921 29.073 313 187 10 312 593 88 396 2.93e-19 90.5
Msa0791120 MtrunA17_Chr2g0317921 29.487 234 127 7 31 230 88 317 1.62e-12 69.7
Msa0791120 MtrunA17_Chr6g0469251 30.233 301 172 12 318 593 14 301 1.69e-15 77.8
Msa0791120 MtrunA17_Chr3g0079561 30.739 257 142 10 361 593 13 257 3.47e-14 73.2
Msa0791120 MtrunA17_Chr3g0131521 27.740 292 150 12 313 566 37 305 1.99e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0791120 AT4G23430.2 71.154 312 89 1 282 592 1 312 4.92e-162 466
Msa0791120 AT4G23430.2 60.772 311 99 5 1 288 1 311 5.85e-123 366
Msa0791120 AT4G23420.1 70.570 316 92 1 282 596 1 316 7.55e-162 465
Msa0791120 AT4G23420.1 60.772 311 99 5 1 288 1 311 2.31e-123 367
Msa0791120 AT4G23420.2 70.570 316 92 1 282 596 1 316 7.55e-162 465
Msa0791120 AT4G23420.2 60.772 311 99 5 1 288 1 311 2.31e-123 367
Msa0791120 AT4G23430.1 70.833 312 88 2 282 592 1 310 2.11e-159 459
Msa0791120 AT4G23430.1 60.129 311 99 6 1 288 1 309 1.17e-119 357
Msa0791120 AT4G23420.3 69.401 317 96 1 277 592 13 329 7.49e-159 458
Msa0791120 AT4G23420.3 59.871 309 101 5 3 288 20 328 2.37e-119 357
Msa0791120 AT4G11410.1 67.619 315 102 0 282 596 1 315 3.29e-155 448
Msa0791120 AT4G11410.1 61.688 308 96 3 1 286 1 308 9.41e-124 368
Msa0791120 AT4G23430.4 68.590 312 87 2 282 592 1 302 1.74e-152 441
Msa0791120 AT4G23430.4 57.878 311 98 6 1 288 1 301 4.67e-113 340
Msa0791120 AT4G23430.3 68.269 312 86 3 282 592 1 300 1.11e-149 434
Msa0791120 AT4G23430.3 57.235 311 98 7 1 288 1 299 1.37e-109 331
Msa0791120 AT4G23420.5 71.756 262 73 1 282 542 1 262 1.11e-133 391
Msa0791120 AT4G23420.5 67.557 262 73 2 1 250 1 262 4.92e-122 361
Msa0791120 AT4G23420.4 74.494 247 62 1 282 527 1 247 4.32e-130 382
Msa0791120 AT4G23420.4 68.826 247 65 2 1 235 1 247 2.49e-116 347
Msa0791120 AT4G11410.2 71.020 245 71 0 282 526 1 245 3.45e-122 362
Msa0791120 AT4G11410.2 69.796 245 63 1 1 234 1 245 4.62e-116 346
Msa0791120 AT5G02540.1 59.283 307 125 0 287 593 10 316 1.14e-120 360
Msa0791120 AT5G02540.1 47.546 326 144 5 6 309 10 330 1.32e-83 265
Msa0791120 AT2G37540.1 56.026 307 135 0 287 593 10 316 6.28e-120 358
Msa0791120 AT2G37540.1 51.953 256 112 1 6 250 10 265 5.26e-87 273
Msa0791120 AT2G37540.2 59.322 236 96 0 287 522 10 245 9.41e-96 294
Msa0791120 AT2G37540.2 54.237 236 97 1 6 230 10 245 3.29e-86 269
Msa0791120 AT4G24050.1 44.551 312 166 4 289 595 13 322 3.04e-80 256
Msa0791120 AT4G24050.1 42.412 257 134 3 8 250 13 269 1.20e-56 194
Msa0791120 AT5G50130.1 45.631 309 164 3 289 593 13 321 6.50e-80 256
Msa0791120 AT5G50130.1 42.248 258 134 4 8 250 13 270 2.25e-54 188
Msa0791120 AT5G50130.8 44.840 281 154 1 314 593 7 287 1.82e-73 238
Msa0791120 AT5G50130.8 41.304 230 123 2 33 250 7 236 2.45e-48 171
Msa0791120 AT5G50130.7 45.035 282 153 2 314 593 7 288 6.70e-73 236
Msa0791120 AT5G50130.7 41.558 231 122 3 33 250 7 237 9.36e-48 169
Msa0791120 AT1G64590.1 43.813 299 165 2 298 593 22 320 4.50e-68 224
Msa0791120 AT1G64590.1 38.267 277 154 4 17 276 22 298 4.23e-45 163
Msa0791120 AT5G50130.2 44.906 265 142 2 289 549 13 277 2.42e-66 219
Msa0791120 AT5G50130.2 42.023 257 135 3 8 250 13 269 5.48e-55 189
Msa0791120 AT5G50130.4 45.113 266 141 3 289 549 13 278 8.53e-66 218
Msa0791120 AT5G50130.4 42.248 258 134 4 8 250 13 270 2.08e-54 188
Msa0791120 AT5G50130.9 48.291 234 119 1 289 520 13 246 6.45e-65 213
Msa0791120 AT5G50130.9 44.872 234 116 2 8 228 13 246 2.09e-55 188
Msa0791120 AT5G50130.3 48.511 235 118 2 289 520 13 247 2.65e-64 212
Msa0791120 AT5G50130.3 45.106 235 115 3 8 228 13 247 8.88e-55 187
Msa0791120 AT4G24050.2 41.852 270 152 3 283 549 7 274 8.21e-64 211
Msa0791120 AT4G24050.2 41.985 262 138 3 8 255 13 274 1.39e-57 195
Msa0791120 AT5G50130.6 44.304 237 130 1 315 549 8 244 1.40e-59 201
Msa0791120 AT5G50130.6 41.485 229 122 2 34 250 8 236 2.36e-48 171
Msa0791120 AT5G50130.5 44.538 238 129 2 315 549 8 245 5.86e-59 199
Msa0791120 AT5G50130.5 41.739 230 121 3 34 250 8 237 9.70e-48 169
Msa0791120 AT4G27760.1 31.046 306 176 9 311 593 58 351 4.99e-29 119
Msa0791120 AT4G27760.1 34.513 226 115 8 30 233 58 272 2.18e-16 81.6
Msa0791120 AT5G53090.1 32.226 301 179 8 311 593 57 350 3.13e-27 114
Msa0791120 AT5G53090.1 33.180 217 120 6 30 228 57 266 1.68e-13 72.8
Msa0791120 AT5G53100.1 31.148 305 180 9 311 593 45 341 6.35e-26 110
Msa0791120 AT5G53100.1 35.160 219 115 7 30 228 45 256 5.20e-13 71.2
Msa0791120 AT5G54190.1 28.296 311 188 10 314 593 96 402 1.43e-23 103
Msa0791120 AT5G54190.1 31.034 232 122 8 33 230 96 323 2.43e-18 88.2
Msa0791120 AT1G03630.1 31.090 312 181 12 312 593 91 398 2.67e-23 102
Msa0791120 AT1G03630.1 33.333 234 117 10 31 230 91 319 9.57e-15 77.0
Msa0791120 AT1G03630.2 31.090 312 181 12 312 593 89 396 2.78e-23 102
Msa0791120 AT1G03630.2 33.333 234 117 10 31 230 89 317 8.72e-15 77.0
Msa0791120 AT5G04070.1 28.378 296 184 7 313 589 61 347 3.62e-22 99.0
Msa0791120 AT5G04070.1 26.068 234 145 4 32 241 61 290 3.10e-12 68.9
Msa0791120 AT4G09750.1 28.014 282 189 6 285 566 20 287 3.64e-21 95.1
Msa0791120 AT4G09750.1 25.403 248 158 6 4 235 20 256 7.35e-13 70.5
Msa0791120 AT4G27440.2 29.260 311 185 10 314 593 92 398 1.08e-20 95.1
Msa0791120 AT4G27440.2 30.736 231 124 7 33 230 92 319 5.91e-14 74.7
Msa0791120 AT4G27440.1 29.260 311 185 10 314 593 92 398 1.08e-20 95.1
Msa0791120 AT4G27440.1 30.736 231 124 7 33 230 92 319 5.91e-14 74.7
Msa0791120 AT5G15940.3 27.575 301 188 12 313 592 63 354 1.01e-18 88.6
Msa0791120 AT5G15940.3 25.225 222 138 4 32 229 63 280 7.78e-11 64.7
Msa0791120 AT5G15940.2 27.575 301 188 12 313 592 63 354 1.01e-18 88.6
Msa0791120 AT5G15940.2 25.225 222 138 4 32 229 63 280 7.78e-11 64.7
Msa0791120 AT5G15940.1 27.575 301 188 12 313 592 62 353 1.04e-18 88.6
Msa0791120 AT5G15940.1 25.225 222 138 4 32 229 62 279 7.33e-11 64.7
Msa0791120 AT5G54190.2 25.614 285 178 9 339 593 1 281 1.30e-16 80.9
Msa0791120 AT5G15940.4 28.251 223 141 7 313 521 63 280 4.77e-15 77.0
Msa0791120 AT5G15940.4 25.225 222 138 4 32 229 63 280 6.77e-11 64.3

Find 135 sgRNAs with CRISPR-Local

Find 670 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAGTTCAATGTTGTCTT+TGG 0.213224 5_3:-1968803 None:intergenic
GCGCGGTGTTCATGTGATTA+TGG 0.226178 5_3:+1968376 Msa0791120:CDS
TTCAGCAAGAAAGGTGTTTC+TGG 0.229466 5_3:+1967138 Msa0791120:CDS
GGTCTCACTGCCATTGTTAC+TGG 0.236378 5_3:+1967213 Msa0791120:CDS
AAGAAATAATGCAGGAATTA+TGG 0.267594 5_3:+1968762 Msa0791120:intron
CGCGGTGTTCATGTGATTAT+GGG 0.273076 5_3:+1968377 Msa0791120:CDS
CTGAGCTTATAGTTAATGTT+TGG 0.274240 5_3:+1971822 Msa0791120:three_prime_UTR
CTGGGATTTCAGCATCAATT+TGG 0.274620 5_3:+1971536 Msa0791120:CDS
GCATCTGAGTATAATTCTTC+TGG 0.288049 5_3:+1968518 Msa0791120:CDS
CTCTTTAAGTATTGCTTCTC+TGG 0.294320 5_3:-1960490 None:intergenic
ACATGGTGTCCATGTGATTA+TGG 0.307075 5_3:+1960437 Msa0791120:CDS
GATTATGGCTGTTAGAAATA+AGG 0.314737 5_3:+1960452 Msa0791120:CDS
TGAGCTTATAGTTAATGTTT+GGG 0.320031 5_3:+1971823 Msa0791120:three_prime_UTR
ACATGGAAGGGACGCTGATT+TGG 0.331121 5_3:+1971503 Msa0791120:CDS
TTCAGCAGGAAAGGGGTATC+TGG 0.332661 5_3:+1959945 Msa0791120:CDS
TTGTATACAGTTACAGCAAA+TGG 0.345777 5_3:+1963018 Msa0791120:intron
CACTAACTCCCTTCACTTGT+GGG 0.347652 5_3:-1971440 None:intergenic
CCAACTTACAAAACATTTCA+AGG 0.364591 5_3:+1963085 Msa0791120:CDS
GGAGTTAGATCTCAGTTCAT+TGG 0.382633 5_3:+1960539 Msa0791120:CDS
CTGTAGTTCGATGTTGTCAT+TGG 0.387818 5_3:-1961297 None:intergenic
ACGCGTGTTCTTGCTTTACA+TGG 0.389431 5_3:+1960420 Msa0791120:CDS
GGAGTTAGATCTTAGCTCAT+TGG 0.400097 5_3:+1968478 Msa0791120:CDS
CCACTAACTCCCTTCACTTG+TGG 0.412556 5_3:-1971441 None:intergenic
CTGATTTGGCAAAGAAACTC+TGG 0.413553 5_3:+1971517 Msa0791120:CDS
TTACCACATACCTATGTGAT+TGG 0.416556 5_3:-1968833 None:intergenic
TGTATACAGTTACAGCAAAT+GGG 0.425806 5_3:+1963019 Msa0791120:intron
TACAGCAAATGGGGTGCATA+TGG 0.428773 5_3:+1963029 Msa0791120:CDS
TACAGCAGATGGGGTGCATA+TGG 0.428773 5_3:+1969324 Msa0791120:CDS
ACAGGAGCATCCAGTGGTAT+TGG 0.435914 5_3:+1960387 Msa0791120:intron
CTCCATCATGATCAGGAAGA+TGG 0.437998 5_3:+1970104 Msa0791120:intron
GCATCCGAATTTAATTCCTC+TGG 0.439216 5_3:+1960579 Msa0791120:CDS
CTGCCGTGTGTCACAAAAGC+AGG 0.443388 5_3:-1967085 None:intergenic
AGATTGGTGACAATTGTTCC+TGG 0.444579 5_3:-1970155 None:intergenic
CCACAAGTGAAGGGAGTTAG+TGG 0.447541 5_3:+1971441 Msa0791120:CDS
TTACATCTTGATCAGGATGA+TGG 0.452961 5_3:+1963703 Msa0791120:intron
CACATTAAATAAAACTAGTA+AGG 0.454137 5_3:-1971768 None:intergenic
ACAGGAGCATCCAGCGGCAT+TGG 0.459677 5_3:+1968326 Msa0791120:intron
GAAACACCTTTCTTGCTGAA+TGG 0.471111 5_3:-1967135 None:intergenic
AGTCTCAGCGCCAATGCCGC+TGG 0.474761 5_3:-1968336 None:intergenic
AAGACCAGAGGAATTAAATT+CGG 0.474997 5_3:-1960583 None:intergenic
AGATTGGTGGCAATGCCTCC+TGG 0.478554 5_3:-1963754 None:intergenic
GAATTTATGTGTATGAATGT+AGG 0.479989 5_3:-1971800 None:intergenic
ACAAAATTAATGAACAATCA+AGG 0.483699 5_3:+1961879 Msa0791120:CDS
TGTGGCCATTCAGCAGGAAA+GGG 0.484540 5_3:+1959937 Msa0791120:CDS
AAATCTTTGATAATGACATA+TGG 0.484963 5_3:+1971695 Msa0791120:three_prime_UTR
ACTCATGGAATTGATGCAAC+TGG 0.489575 5_3:+1959999 Msa0791120:CDS
TGCAAATTTGTGAGCTTCTG+AGG 0.489977 5_3:-1961834 None:intergenic
CTCTGCTAAACTTGATGCCA+TGG 0.490137 5_3:+1968457 Msa0791120:CDS
ATAAAATCAATGACGAATCA+AGG 0.490214 5_3:+1969192 Msa0791120:CDS
CAGGTCTAATAAATGTGGTT+GGG 0.491530 5_3:+1970645 Msa0791120:intron
CCTTATACAGTTACAGCAGA+TGG 0.495361 5_3:+1969313 Msa0791120:intron
CGTTGATTGCGCTGTTATGA+CGG 0.496487 5_3:-1963780 None:intergenic
TCATCATGTGGCCATTCAGC+AGG 0.496748 5_3:+1959931 Msa0791120:exon
CACAAATTTGCATATTCTGA+AGG 0.498869 5_3:+1961845 Msa0791120:CDS
TCCATCATGATCAGGAAGAT+GGG 0.501810 5_3:+1970105 Msa0791120:intron
AATTTATGTGTATGAATGTA+GGG 0.504808 5_3:-1971799 None:intergenic
CTTATACAGTTACAGCAGAT+GGG 0.512298 5_3:+1969314 Msa0791120:intron
GCAGGTCTAATAAATGTGGT+TGG 0.514107 5_3:+1970644 Msa0791120:intron
CCACATACCTATGTGATTGG+TGG 0.516243 5_3:-1968830 None:intergenic
TTGTCATTGGAAAGCATGAA+AGG 0.519351 5_3:-1961284 None:intergenic
GATACCCCTTTCCTGCTGAA+TGG 0.522828 5_3:-1959942 None:intergenic
ATGTGGCCATTCAGCAGGAA+AGG 0.530864 5_3:+1959936 Msa0791120:CDS
ATGTGGCCATTCAGCAAGAA+AGG 0.533159 5_3:+1967129 Msa0791120:CDS
ATGTTTCACAAATACCTAAG+TGG 0.533317 5_3:-1961331 None:intergenic
ATTGCAAATTCTCTTCATCC+AGG 0.533827 5_3:+1963736 Msa0791120:CDS
GGCCTCACTGCTATTGTCAC+TGG 0.537638 5_3:+1960020 Msa0791120:CDS
TTGTCTTTGGACAAACTGAA+AGG 0.538568 5_3:-1968790 None:intergenic
GTAATTGTAAGAAATAATGC+AGG 0.539047 5_3:+1968754 Msa0791120:intron
ACTGCAATTGCAATATATCT+CGG 0.539733 5_3:+1967059 Msa0791120:CDS
CTGCAATTGCAATATATCTC+GGG 0.542693 5_3:+1967060 Msa0791120:CDS
TGATTTGGCAAAGAAACTCT+GGG 0.543852 5_3:+1971518 Msa0791120:CDS
CAGTTTGCGACAAACCACTT+AGG 0.544627 5_3:+1961317 Msa0791120:CDS
ATGTCGCCTCAGAGGCTCAC+AGG 0.545694 5_3:+1969141 Msa0791120:CDS
ACTGCAAATTCTCTTCATCC+AGG 0.546611 5_3:+1970137 Msa0791120:CDS
CGTTCACTGCACTGTTATGT+CGG 0.547282 5_3:-1970181 None:intergenic
AGCATTGCACCCACAAGTGA+AGG 0.549189 5_3:+1971431 Msa0791120:CDS
TGTCTTTGGACAAACTGAAA+GGG 0.554943 5_3:-1968789 None:intergenic
AATCAGCGTCCCTTCCATGT+GGG 0.555356 5_3:-1971500 None:intergenic
GCTGTTATGACGGTAAAGAT+TGG 0.556805 5_3:-1963770 None:intergenic
CAGTTTGCCACCAATCACAT+AGG 0.557845 5_3:+1968823 Msa0791120:CDS
ACACATGGAATCGATGCTAC+TGG 0.558914 5_3:+1967192 Msa0791120:CDS
ACTGTTATGTCGGAAAAGAT+TGG 0.564967 5_3:-1970171 None:intergenic
AAGAAACAATGCAGGAGTCA+TGG 0.567107 5_3:+1961256 Msa0791120:intron
AGTCTCAACTCCAATACCAC+TGG 0.568579 5_3:-1960397 None:intergenic
GAGCTTATAGTTAATGTTTG+GGG 0.570044 5_3:+1971824 Msa0791120:three_prime_UTR
ACAGCTGAAGAAGTTACTCA+TGG 0.574245 5_3:+1959984 Msa0791120:CDS
TGCAACAGGTATAGTAAATG+TGG 0.575815 5_3:+1964838 Msa0791120:intron
TGTCATTGGAAAGCATGAAA+GGG 0.579731 5_3:-1961283 None:intergenic
ACACGCAAAAGTAAGAAAGA+AGG 0.580402 5_3:+1969107 Msa0791120:CDS
CAAAACAACCCCACATGGAA+GGG 0.582561 5_3:+1971491 Msa0791120:CDS
ACTAGCTAGTGAGGTTGTAA+CGG 0.583902 5_3:+1959894 Msa0791120:five_prime_UTR
ACAAAACAACCCCACATGGA+AGG 0.586260 5_3:+1971490 Msa0791120:CDS
AGAGACTGATACGCAATATG+TGG 0.588960 5_3:+1967112 Msa0791120:CDS
TGTCAAAGAAACAATACTCA+AGG 0.594611 5_3:+1968427 Msa0791120:CDS
CACAGGTTCGCATATTCTGA+AGG 0.595062 5_3:+1969158 Msa0791120:CDS
CGTCATAACAGCGCAATCAA+CGG 0.595268 5_3:+1963781 Msa0791120:CDS
GCTAGTGAAAGTAAGACTGA+AGG 0.596766 5_3:+1961794 Msa0791120:CDS
GTTATGACGGTAAAGATTGG+TGG 0.600769 5_3:-1963767 None:intergenic
ATCAGCGTCCCTTCCATGTG+GGG 0.601486 5_3:-1971499 None:intergenic
AAATCAGCGTCCCTTCCATG+TGG 0.606536 5_3:-1971501 None:intergenic
TAGTAAGGATCCTATGCAGA+GGG 0.607534 5_3:-1971753 None:intergenic
CCAACTTACAAAACACCTCA+AGG 0.609448 5_3:+1969380 Msa0791120:CDS
GTTACTCAAACTAGCTAGTG+AGG 0.609973 5_3:+1959885 Msa0791120:five_prime_UTR
ACAGGTATAGTAAATGTGGT+TGG 0.612281 5_3:+1964842 Msa0791120:intron
TCATGATCAGGAAGATGGGG+TGG 0.613846 5_3:+1970109 Msa0791120:intron
TCTTTGATAATGACATATGG+TGG 0.614329 5_3:+1971698 Msa0791120:three_prime_UTR
TCTTACATCAAGATGTTCAG+CGG 0.618040 5_3:-1968545 None:intergenic
TAGCATTGACGAGTAACACT+TGG 0.618614 5_3:-1971578 None:intergenic
TTCTAACAGCCATAATCACA+TGG 0.621462 5_3:-1960446 None:intergenic
GCATTGCACCCACAAGTGAA+GGG 0.624705 5_3:+1971432 Msa0791120:CDS
TGCGAACCTGTGAGCCTCTG+AGG 0.625555 5_3:-1969147 None:intergenic
TGCCGTGTGTCACAAAAGCA+GGG 0.627037 5_3:-1967084 None:intergenic
AAAGAGAGATTATCATCATG+TGG 0.632744 5_3:+1959919 Msa0791120:exon
CCATCATGATCAGGAAGATG+GGG 0.633051 5_3:+1970106 Msa0791120:intron
ACTCGTGTCCTTGCTTTGCG+CGG 0.635714 5_3:+1968359 Msa0791120:CDS
GTGTACAAAACAACCCCACA+TGG 0.637066 5_3:+1971486 Msa0791120:CDS
TTATACAGTTACAGCAGATG+GGG 0.637977 5_3:+1969315 Msa0791120:intron
TTATGCAGGTCTAATAAATG+TGG 0.639665 5_3:+1970640 Msa0791120:intron
GTATACAGTTACAGCAAATG+GGG 0.639935 5_3:+1963020 Msa0791120:intron
CTAGTAAGGATCCTATGCAG+AGG 0.640026 5_3:-1971754 None:intergenic
TGAGCTAAGATCTAACTCCA+TGG 0.641141 5_3:-1968474 None:intergenic
CGACATAACAGTGCAGTGAA+CGG 0.644050 5_3:+1970182 Msa0791120:CDS
CATGAACACCGCGCAAAGCA+AGG 0.649556 5_3:-1968367 None:intergenic
AATTGTTAATGTCGCCTCAG+AGG 0.651795 5_3:+1969133 Msa0791120:CDS
ATGGCATCAAGTTTAGCAGA+GGG 0.654356 5_3:-1968455 None:intergenic
TATGGACCAACCAGTAACAA+TGG 0.654679 5_3:-1967223 None:intergenic
GATTATGGGTGTGAGAAACA+TGG 0.655252 5_3:+1968391 Msa0791120:CDS
GTGGCCATTCAGCAGGAAAG+GGG 0.656505 5_3:+1959938 Msa0791120:CDS
ACTGCTGAACAAGTTACACA+TGG 0.658849 5_3:+1967177 Msa0791120:CDS
ATAGATAGATAAATGTGACA+AGG 0.675679 5_3:-1971664 None:intergenic
CATGGCATCAAGTTTAGCAG+AGG 0.683203 5_3:-1968456 None:intergenic
ATGTTAACAGGAGCATCCAG+TGG 0.683391 5_3:+1960381 Msa0791120:intron
GCAAATTCTCTTCATCCAGG+AGG 0.683556 5_3:+1963739 Msa0791120:CDS
GTGATAACAGGAGCATCCAG+CGG 0.698671 5_3:+1968320 Msa0791120:intron
TACCAGTGACAATAGCAGTG+AGG 0.758013 5_3:-1960022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAAATAAACAAAAA+GGG - chr5_3:1960073-1960092 None:intergenic 10.0%
!! AAAATGAAAAATAAACAAAA+AGG - chr5_3:1960074-1960093 None:intergenic 10.0%
!!! TCTTATTATCAATTTTATTT+AGG + chr5_3:1960646-1960665 Msa0791120:intron 10.0%
!! CAAAATAAATAGTAAATAAA+AGG - chr5_3:1961103-1961122 None:intergenic 10.0%
!! TTAATCATAATATTATTAGA+TGG - chr5_3:1964083-1964102 None:intergenic 10.0%
!! ATCTAATAATATTATGATTA+AGG + chr5_3:1964082-1964101 Msa0791120:intron 10.0%
!!! GATTTTTTTTTTTTTTATCA+AGG + chr5_3:1964140-1964159 Msa0791120:intron 10.0%
!!! TCTTTATTTTTATCTTTTAT+TGG + chr5_3:1966404-1966423 Msa0791120:intron 10.0%
!!! CTTTATTTTTATCTTTTATT+GGG + chr5_3:1966405-1966424 Msa0791120:intron 10.0%
!! AAAACATAAACATAAAATTA+GGG - chr5_3:1966444-1966463 None:intergenic 10.0%
!! AAAAACATAAACATAAAATT+AGG - chr5_3:1966445-1966464 None:intergenic 10.0%
!!! TTTTCTTTAATTTCAAAATA+CGG - chr5_3:1966802-1966821 None:intergenic 10.0%
!!! GATAAAATTATAACTTTTTT+TGG + chr5_3:1966878-1966897 Msa0791120:intron 10.0%
!!! AAATGATTAATTACTTATTT+TGG + chr5_3:1966910-1966929 Msa0791120:intron 10.0%
!! AATGTTTATGAATATATTAT+AGG - chr5_3:1967514-1967533 None:intergenic 10.0%
!!! AATAAAAAAACCAATTTTAA+AGG - chr5_3:1970560-1970579 None:intergenic 10.0%
!! TTAAATATTATTTAACCTAT+AGG + chr5_3:1971304-1971323 Msa0791120:intron 10.0%
!! TAATTATTATATGGATATGA+TGG + chr5_3:1960357-1960376 Msa0791120:intron 15.0%
!!! TTTAATTTTAAGTTTCAAAC+AGG + chr5_3:1960695-1960714 Msa0791120:intron 15.0%
!! TATAGATTAAAAACGAAATT+TGG - chr5_3:1960787-1960806 None:intergenic 15.0%
!!! AAGATCATTTTAAATTTGAT+GGG - chr5_3:1960863-1960882 None:intergenic 15.0%
!!! AAAGATCATTTTAAATTTGA+TGG - chr5_3:1960864-1960883 None:intergenic 15.0%
!!! GTAAACATTTTTAAAGATAA+TGG + chr5_3:1961034-1961053 Msa0791120:intron 15.0%
!!! AAACTTCAATTTTATTTTCT+TGG + chr5_3:1961999-1962018 Msa0791120:intron 15.0%
!! AATAATAAATATCATGTAAG+TGG - chr5_3:1962772-1962791 None:intergenic 15.0%
!! ACATGATATTTATTATTGTT+TGG + chr5_3:1962775-1962794 Msa0791120:intron 15.0%
!! TAAATCAAAGATAATTAATG+TGG - chr5_3:1963671-1963690 None:intergenic 15.0%
!! ATTATAGTATTATACTATTC+AGG + chr5_3:1963809-1963828 Msa0791120:intron 15.0%
!! AATAATATTATGATTAAGGT+TGG + chr5_3:1964086-1964105 Msa0791120:intron 15.0%
!! ATAAAACTAATATTGTAGTA+TGG - chr5_3:1964277-1964296 None:intergenic 15.0%
!!! TTTATTGTTGTTATACATTA+TGG - chr5_3:1964565-1964584 None:intergenic 15.0%
!! ATAAAGTAATAATGTATGAA+TGG - chr5_3:1964637-1964656 None:intergenic 15.0%
!!! TTGGTTTATTATTATTTTTG+AGG + chr5_3:1965480-1965499 Msa0791120:intron 15.0%
!!! TATATGTATTTTAAAACTGA+TGG + chr5_3:1965620-1965639 Msa0791120:intron 15.0%
!!! TTCATATTTTACCTTTATAA+AGG + chr5_3:1965706-1965725 Msa0791120:intron 15.0%
!!! TTATTGCCTTTATTTTTTTT+TGG - chr5_3:1965749-1965768 None:intergenic 15.0%
!! AAAAAATAAAGGCAATAATA+AGG + chr5_3:1965751-1965770 Msa0791120:intron 15.0%
!!! TGTTGATTATATTAGTAAAT+TGG - chr5_3:1966283-1966302 None:intergenic 15.0%
!! AAACATAAACATAAAATTAG+GGG - chr5_3:1966443-1966462 None:intergenic 15.0%
!!! TTCAATCAAATCATTTTTAA+AGG - chr5_3:1966513-1966532 None:intergenic 15.0%
!! TATGTTGTAAAATAAATGTT+GGG + chr5_3:1966583-1966602 Msa0791120:intron 15.0%
!! AATAACATCAAATTAGAATT+GGG + chr5_3:1966736-1966755 Msa0791120:intron 15.0%
!! AAGAAAAAGTTTGAATAAAT+AGG + chr5_3:1966815-1966834 Msa0791120:intron 15.0%
!!! TTATTTTTTGAAAGAAGAAA+TGG + chr5_3:1966845-1966864 Msa0791120:intron 15.0%
!!! CTTATTTTATTAAGTTCTTT+AGG + chr5_3:1967539-1967558 Msa0791120:intron 15.0%
!! GTATGCATAAAAAATTATTA+AGG - chr5_3:1967626-1967645 None:intergenic 15.0%
!!! TATATTTTTTATGCAATTTC+TGG - chr5_3:1967675-1967694 None:intergenic 15.0%
!! AAAAAAAAAATTCAGTTGAT+TGG - chr5_3:1968889-1968908 None:intergenic 15.0%
!! TGATAACTTATATTGAATTA+TGG - chr5_3:1969439-1969458 None:intergenic 15.0%
!! AAAATGATGATAATACAAAT+TGG - chr5_3:1969964-1969983 None:intergenic 15.0%
!! AATATAAACAATATTGTTAG+AGG - chr5_3:1971251-1971270 None:intergenic 15.0%
!! CTAACAATATTGTTTATATT+AGG + chr5_3:1971251-1971270 Msa0791120:intron 15.0%
!! TACTAAAAAAAACTTATACA+AGG - chr5_3:1971333-1971352 None:intergenic 15.0%
!! AAAACTACTATTGAACAAAA+GGG - chr5_3:1960106-1960125 None:intergenic 20.0%
!! AAAAACTACTATTGAACAAA+AGG - chr5_3:1960107-1960126 None:intergenic 20.0%
!!! TTTTATGTTGCTAAGTTATT+GGG + chr5_3:1960132-1960151 Msa0791120:intron 20.0%
!! GGCTATGATTAATTATTATA+TGG + chr5_3:1960348-1960367 Msa0791120:intron 20.0%
!! TCAGACATAAATAAATCTAA+TGG - chr5_3:1961536-1961555 None:intergenic 20.0%
!! TTTATGTAATATAATTCCAC+AGG + chr5_3:1961725-1961744 Msa0791120:intron 20.0%
!!! GTTCATTAATTTTGTCAAAA+CGG - chr5_3:1961874-1961893 None:intergenic 20.0%
!! ACAAAATTAATGAACAATCA+AGG + chr5_3:1961879-1961898 Msa0791120:CDS 20.0%
!!! AAAGTTTTTAAAAATGGAAG+AGG + chr5_3:1961939-1961958 Msa0791120:intron 20.0%
!!! GATGAAGAATATATTTGTTA+AGG - chr5_3:1962385-1962404 None:intergenic 20.0%
!!! ACTTGTCGTAAATTTTTTTT+TGG + chr5_3:1963960-1963979 Msa0791120:intron 20.0%
!! TCATAATATTATTAGATGGT+GGG - chr5_3:1964079-1964098 None:intergenic 20.0%
!! ATCATAATATTATTAGATGG+TGG - chr5_3:1964080-1964099 None:intergenic 20.0%
!!! TGAATTTTTCAATATTCAGA+GGG - chr5_3:1964120-1964139 None:intergenic 20.0%
!! CAAATAAAATAGTTAGACTT+AGG - chr5_3:1964314-1964333 None:intergenic 20.0%
!! TTTCTTATACTATTAGTGAA+GGG + chr5_3:1964370-1964389 Msa0791120:intron 20.0%
!! TGTCAAAAAAATAAAACGTA+TGG - chr5_3:1964413-1964432 None:intergenic 20.0%
!!! TGTTGATTTTATAAAACGTA+CGG - chr5_3:1964441-1964460 None:intergenic 20.0%
!!! GAAAAAGCAAACAAATTTTA+TGG - chr5_3:1964761-1964780 None:intergenic 20.0%
!!! ATATTTTTCAGACAATAATG+TGG + chr5_3:1965128-1965147 Msa0791120:intron 20.0%
!! AATAAACCAAACAACAAAAA+GGG - chr5_3:1965470-1965489 None:intergenic 20.0%
!! TAATAAACCAAACAACAAAA+AGG - chr5_3:1965471-1965490 None:intergenic 20.0%
!! TAATAAACCAAAGAACAAAA+AGG + chr5_3:1965512-1965531 Msa0791120:intron 20.0%
!! AATAAACCAAAGAACAAAAA+GGG + chr5_3:1965513-1965532 Msa0791120:intron 20.0%
!! ACAAAAAGGGAAATATTATT+AGG + chr5_3:1965526-1965545 Msa0791120:intron 20.0%
!! CTTCTACCAAAAAAAAATAA+AGG + chr5_3:1965740-1965759 Msa0791120:intron 20.0%
!! TATTGACAAAAAAATTGCTT+GGG - chr5_3:1965993-1966012 None:intergenic 20.0%
!! ATATTGACAAAAAAATTGCT+TGG - chr5_3:1965994-1966013 None:intergenic 20.0%
!!! TTTTTTGTCAATATTCATTC+AGG + chr5_3:1966000-1966019 Msa0791120:intron 20.0%
!!! TTTTTGTCAATATTCATTCA+GGG + chr5_3:1966001-1966020 Msa0791120:intron 20.0%
!! AACATAAACATAAAATTAGG+GGG - chr5_3:1966442-1966461 None:intergenic 20.0%
!! CTATGTTGTAAAATAAATGT+TGG + chr5_3:1966582-1966601 Msa0791120:intron 20.0%
!! ATTCTATCTATTGAGATAAA+AGG - chr5_3:1966691-1966710 None:intergenic 20.0%
!! CAATAACATCAAATTAGAAT+TGG + chr5_3:1966735-1966754 Msa0791120:intron 20.0%
!! ATAACATCAAATTAGAATTG+GGG + chr5_3:1966737-1966756 Msa0791120:intron 20.0%
!! GAAATAATTAAGAAAGAAAC+AGG - chr5_3:1967256-1967275 None:intergenic 20.0%
!! TTTCTTAATTATTTCCCAAA+AGG + chr5_3:1967261-1967280 Msa0791120:intron 20.0%
!! TTCTTAATTATTTCCCAAAA+GGG + chr5_3:1967262-1967281 Msa0791120:intron 20.0%
!!! TAAAAAGATTTTCGTGTAAA+CGG - chr5_3:1967421-1967440 None:intergenic 20.0%
!!! AATTTTTTATGCATACCTTT+TGG + chr5_3:1967630-1967649 Msa0791120:intron 20.0%
!!! AATGTTACTATTTTATTCTC+CGG + chr5_3:1968855-1968874 Msa0791120:intron 20.0%
!!! TCATCAAATGAATTTTCAAA+AGG - chr5_3:1968913-1968932 None:intergenic 20.0%
!!! ATGAATTATTTTAATTACGC+AGG + chr5_3:1969038-1969057 Msa0791120:intron 20.0%
!! AATTGCTTAAAATGTAATCA+AGG - chr5_3:1969248-1969267 None:intergenic 20.0%
!!! TTGATTACATTTTAAGCAAT+TGG + chr5_3:1969247-1969266 Msa0791120:intron 20.0%
!!! GTTTTGGTTGATTAATAAAA+AGG + chr5_3:1969483-1969502 Msa0791120:intron 20.0%
!! ATTAATTCTGATCATATCTT+TGG + chr5_3:1969926-1969945 Msa0791120:intron 20.0%
!!! TTTTTCATTCTTGACTTTTT+GGG + chr5_3:1969994-1970013 Msa0791120:intron 20.0%
!! ATATCAAAGATAGATTAATG+TGG - chr5_3:1970070-1970089 None:intergenic 20.0%
!! TTATTCATGTAAATTCACTT+TGG + chr5_3:1970219-1970238 Msa0791120:intron 20.0%
!! TATATTCTGTATTTAGTTGT+TGG + chr5_3:1970421-1970440 Msa0791120:intron 20.0%
!! TTTAGTGCTATATATTACAA+TGG - chr5_3:1970510-1970529 None:intergenic 20.0%
!! ACTAATACTTTATCTTTCAT+AGG - chr5_3:1970945-1970964 None:intergenic 20.0%
!!! TACTCCAATTTTATTAATGT+AGG + chr5_3:1971386-1971405 Msa0791120:intron 20.0%
!!! ACTCCAATTTTATTAATGTA+GGG + chr5_3:1971387-1971406 Msa0791120:intron 20.0%
!!! AAATCTTTGATAATGACATA+TGG + chr5_3:1971695-1971714 Msa0791120:three_prime_UTR 20.0%
!! AAAAATATGACAGAAAATAG+AGG - chr5_3:1971733-1971752 None:intergenic 20.0%
!! CACATTAAATAAAACTAGTA+AGG - chr5_3:1971771-1971790 None:intergenic 20.0%
!! AATTTATGTGTATGAATGTA+GGG - chr5_3:1971802-1971821 None:intergenic 20.0%
!! CTTTTATGTTGCTAAGTTAT+TGG + chr5_3:1960131-1960150 Msa0791120:intron 25.0%
!!! CAGGAAATCAATTTTAGTTT+TGG - chr5_3:1960253-1960272 None:intergenic 25.0%
!! AATTGATTTCCTGTTGAAAT+TGG + chr5_3:1960260-1960279 Msa0791120:intron 25.0%
! TTAAAAACGTCAACAATGTT+TGG + chr5_3:1960761-1960780 Msa0791120:intron 25.0%
!!! TTACTATTTATTTTGACTCC+TGG + chr5_3:1961108-1961127 Msa0791120:intron 25.0%
! TAACAACTTTAATAGAAACC+AGG - chr5_3:1961129-1961148 None:intergenic 25.0%
! TAATGAACAATCAAGGTAAT+AGG + chr5_3:1961886-1961905 Msa0791120:intron 25.0%
!!! GTGCTGAAAGTTTTTAAAAA+TGG + chr5_3:1961933-1961952 Msa0791120:intron 25.0%
! GTGTGAAAGAGTAATTATAA+CGG + chr5_3:1961976-1961995 Msa0791120:intron 25.0%
!! GTTTTACATCAAAGATTCAT+GGG - chr5_3:1962280-1962299 None:intergenic 25.0%
!! TGTTTTACATCAAAGATTCA+TGG - chr5_3:1962281-1962300 None:intergenic 25.0%
! CATTCATGAATATAACATAG+TGG + chr5_3:1962650-1962669 Msa0791120:intron 25.0%
! TTTAAAAGAGACATTTCAAG+AGG - chr5_3:1962743-1962762 None:intergenic 25.0%
! AATAAATATCATGTAAGTGG+TGG - chr5_3:1962769-1962788 None:intergenic 25.0%
! AACTGTTTCAATTGTAAACA+AGG - chr5_3:1962898-1962917 None:intergenic 25.0%
! TTGTTTACAATTGAAACAGT+TGG + chr5_3:1962897-1962916 Msa0791120:intron 25.0%
! GGAAGCAAACATAATTAAAT+TGG - chr5_3:1962997-1963016 None:intergenic 25.0%
! TTACAAAACATTTCAAGGTA+TGG + chr5_3:1963090-1963109 Msa0791120:intron 25.0%
! TATCTTAATCTCCTATCAAT+TGG + chr5_3:1963412-1963431 Msa0791120:intron 25.0%
! AGCTGATGTTTAACAATATT+TGG - chr5_3:1963470-1963489 None:intergenic 25.0%
!! TTATTTGTTACATCTTGATC+AGG + chr5_3:1963696-1963715 Msa0791120:intron 25.0%
!!! TGTCGTAAATTTTTTTTTGG+TGG + chr5_3:1963963-1963982 Msa0791120:intron 25.0%
!! TAGGTGTTTTATCCTATATT+TGG + chr5_3:1964034-1964053 Msa0791120:intron 25.0%
! CAATATCATGTACCAAATAT+AGG - chr5_3:1964049-1964068 None:intergenic 25.0%
!!! AATTTTTCAATATTCAGAGG+GGG - chr5_3:1964118-1964137 None:intergenic 25.0%
!!! GAATTTTTCAATATTCAGAG+GGG - chr5_3:1964119-1964138 None:intergenic 25.0%
!!! CTGAATTTTTCAATATTCAG+AGG - chr5_3:1964121-1964140 None:intergenic 25.0%
!!! CTTTTAAGCTTTAACATCAT+CGG + chr5_3:1964196-1964215 Msa0791120:intron 25.0%
! AACTAATATTGTAGTATGGA+GGG - chr5_3:1964273-1964292 None:intergenic 25.0%
! AAACTAATATTGTAGTATGG+AGG - chr5_3:1964274-1964293 None:intergenic 25.0%
! CTTTCTTATACTATTAGTGA+AGG + chr5_3:1964369-1964388 Msa0791120:intron 25.0%
! AGTAATTTATAGCACTTGAT+TGG + chr5_3:1964526-1964545 Msa0791120:intron 25.0%
! TAATAATGTATGAATGGTTG+GGG - chr5_3:1964631-1964650 None:intergenic 25.0%
! GTAATAATGTATGAATGGTT+GGG - chr5_3:1964632-1964651 None:intergenic 25.0%
! AGTAATAATGTATGAATGGT+TGG - chr5_3:1964633-1964652 None:intergenic 25.0%
!!! TACCATTGATGATTTTGAAT+TGG + chr5_3:1964689-1964708 Msa0791120:intron 25.0%
!!! ACCATTGATGATTTTGAATT+GGG + chr5_3:1964690-1964709 Msa0791120:intron 25.0%
! ACCTACTATTTATAAATGTG+AGG + chr5_3:1964912-1964931 Msa0791120:intron 25.0%
! CCTACTATTTATAAATGTGA+GGG + chr5_3:1964913-1964932 Msa0791120:intron 25.0%
! CTACTATTTATAAATGTGAG+GGG + chr5_3:1964914-1964933 Msa0791120:intron 25.0%
! AGCTAAGAAAAGTGAAATAT+CGG - chr5_3:1965006-1965025 None:intergenic 25.0%
! TTTCATTCTTATACAACACT+TGG - chr5_3:1965242-1965261 None:intergenic 25.0%
! ATTGTAATTCAGCATGAAAT+AGG + chr5_3:1965378-1965397 Msa0791120:intron 25.0%
! TTGTAATTCAGCATGAAATA+GGG + chr5_3:1965379-1965398 Msa0791120:intron 25.0%
!! AATATTGAGTTTGATTTAGG+AGG - chr5_3:1965446-1965465 None:intergenic 25.0%
!! ATATTTCCCTTTTTGTTCTT+TGG - chr5_3:1965522-1965541 None:intergenic 25.0%
! CCTTATTAATGCCTTTATAA+AGG - chr5_3:1965720-1965739 None:intergenic 25.0%
!!! CCTTTATAAAGGCATTAATA+AGG + chr5_3:1965717-1965736 Msa0791120:intron 25.0%
!! TTTTGTCAATATTCATTCAG+GGG + chr5_3:1966002-1966021 Msa0791120:intron 25.0%
!! TAAATTGGCTTAACTAACAA+AGG - chr5_3:1966268-1966287 None:intergenic 25.0%
! ATTGAAGTAGATACTAAATG+AGG - chr5_3:1966668-1966687 None:intergenic 25.0%
! TACTATATATCTGGATGATA+TGG - chr5_3:1967015-1967034 None:intergenic 25.0%
! TAAAAAGATGATCGTGTAAA+CGG + chr5_3:1967370-1967389 Msa0791120:intron 25.0%
! CAAAATTGTATTCAACCAAA+AGG - chr5_3:1967648-1967667 None:intergenic 25.0%
! AATTGGATAGAGTCAAATAT+GGG - chr5_3:1967791-1967810 None:intergenic 25.0%
! AAATTGGATAGAGTCAAATA+TGG - chr5_3:1967792-1967811 None:intergenic 25.0%
!! TATTCTGAACAATTCGTTTT+TGG + chr5_3:1967934-1967953 Msa0791120:intron 25.0%
!!! ATTCTGAACAATTCGTTTTT+GGG + chr5_3:1967935-1967954 Msa0791120:intron 25.0%
!! TTTTTCTCTTTATATTCTGC+TGG + chr5_3:1968098-1968117 Msa0791120:intron 25.0%
!!! ATCCATAAGGTTTTTGAAAA+TGG + chr5_3:1968123-1968142 Msa0791120:intron 25.0%
!! AACCATTTTCAAAAACCTTA+TGG - chr5_3:1968128-1968147 None:intergenic 25.0%
!! TGTAATTAAGAAAGCACAAT+TGG - chr5_3:1968690-1968709 None:intergenic 25.0%
! GTAATTGTAAGAAATAATGC+AGG + chr5_3:1968754-1968773 Msa0791120:intron 25.0%
! AAGAAATAATGCAGGAATTA+TGG + chr5_3:1968762-1968781 Msa0791120:intron 25.0%
!!! CGTCATTGATTTTATCAAAA+CGG - chr5_3:1969187-1969206 None:intergenic 25.0%
! ATAAAATCAATGACGAATCA+AGG + chr5_3:1969192-1969211 Msa0791120:CDS 25.0%
! TACTTCTACTACATGTTATA+TGG + chr5_3:1969409-1969428 Msa0791120:intron 25.0%
! TTAATAAAAAGGATGTCCTT+AGG + chr5_3:1969494-1969513 Msa0791120:intron 25.0%
!! TTTTATATACTCTACCAAAC+AGG - chr5_3:1969629-1969648 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+GGG - chr5_3:1969668-1969687 None:intergenic 25.0%
! AAATAAGCTGAAAACAACTT+AGG - chr5_3:1969669-1969688 None:intergenic 25.0%
! CTTATTTCCATAAACTCTAT+AGG + chr5_3:1969682-1969701 Msa0791120:intron 25.0%
! TGCTTATGAAAACAACTTAT+AGG + chr5_3:1969707-1969726 Msa0791120:intron 25.0%
!!! CTTTTTCATTCTTGACTTTT+TGG + chr5_3:1969993-1970012 Msa0791120:intron 25.0%
! ATGTTGAATATGAATTATGC+AGG + chr5_3:1970243-1970262 Msa0791120:intron 25.0%
! AGAAAATGTACTCTACATAA+TGG - chr5_3:1970319-1970338 None:intergenic 25.0%
!! TCCTTTACAATAACTTTTGA+TGG + chr5_3:1970360-1970379 Msa0791120:intron 25.0%
! TCCATCAAAAGTTATTGTAA+AGG - chr5_3:1970364-1970383 None:intergenic 25.0%
! CTAAAGCAAATAAGAGTTTA+TGG - chr5_3:1970397-1970416 None:intergenic 25.0%
!! CATAAACTCTTATTTGCTTT+AGG + chr5_3:1970395-1970414 Msa0791120:intron 25.0%
!! CAATGTTGTCAAATAGTTTT+TGG + chr5_3:1970737-1970756 Msa0791120:intron 25.0%
! TTATAATGCACGAATAATCT+CGG + chr5_3:1970791-1970810 Msa0791120:intron 25.0%
! TATTGCATTAACTTTGTGTA+CGG + chr5_3:1970814-1970833 Msa0791120:intron 25.0%
! TAACAACATTCTCTCTTATT+GGG + chr5_3:1970847-1970866 Msa0791120:intron 25.0%
!! TCATATAGATCCCATTATTT+TGG + chr5_3:1970876-1970895 Msa0791120:intron 25.0%
!! CATATAGATCCCATTATTTT+GGG + chr5_3:1970877-1970896 Msa0791120:intron 25.0%
! TCATAGGATAAAATTCATGT+AGG - chr5_3:1970929-1970948 None:intergenic 25.0%
! AAAATAGAGAAGCTTCAAAT+TGG + chr5_3:1971023-1971042 Msa0791120:intron 25.0%
! TTATATTAGGAGAAAACATG+TGG + chr5_3:1971264-1971283 Msa0791120:intron 25.0%
! ATAGATAGATAAATGTGACA+AGG - chr5_3:1971667-1971686 None:intergenic 25.0%
! GAATTTATGTGTATGAATGT+AGG - chr5_3:1971803-1971822 None:intergenic 25.0%
AAAGAGAGATTATCATCATG+TGG + chr5_3:1959919-1959938 Msa0791120:exon 30.0%
AGGGTAAGAAAGAGTAATAA+AGG - chr5_3:1960054-1960073 None:intergenic 30.0%
TTCATCATGGATACATAGTT+AGG + chr5_3:1960177-1960196 Msa0791120:intron 30.0%
GATTATGGCTGTTAGAAATA+AGG + chr5_3:1960452-1960471 Msa0791120:CDS 30.0%
!!! ATGACATCTATTTTTGCTGA+TGG - chr5_3:1960519-1960538 None:intergenic 30.0%
ATCAGCAAAAATAGATGTCA+TGG + chr5_3:1960518-1960537 Msa0791120:CDS 30.0%
AAGACCAGAGGAATTAAATT+CGG - chr5_3:1960586-1960605 None:intergenic 30.0%
TCTTACATCAAGATGTTCAA+TGG - chr5_3:1960609-1960628 None:intergenic 30.0%
TTATTTAGGCAAAACTGCAT+TGG + chr5_3:1960660-1960679 Msa0791120:intron 30.0%
TATTTAGGCAAAACTGCATT+GGG + chr5_3:1960661-1960680 Msa0791120:intron 30.0%
CATAAAAGACTAACTTTCAG+TGG - chr5_3:1960740-1960759 None:intergenic 30.0%
TTAAAGATCATGATCAGTAC+TGG - chr5_3:1961187-1961206 None:intergenic 30.0%
! GTACTGATCATGATCTTTAA+TGG + chr5_3:1961187-1961206 Msa0791120:intron 30.0%
CTGATCTGTTTATTTGTGAT+TGG + chr5_3:1961233-1961252 Msa0791120:intron 30.0%
ATGTTTCACAAATACCTAAG+TGG - chr5_3:1961334-1961353 None:intergenic 30.0%
! TCTCTTGACAAATCTTTTGT+TGG + chr5_3:1961754-1961773 Msa0791120:CDS 30.0%
CACAAATTTGCATATTCTGA+AGG + chr5_3:1961845-1961864 Msa0791120:CDS 30.0%
TTGGCAATCAATGTTACTAT+TGG + chr5_3:1962018-1962037 Msa0791120:intron 30.0%
!! CTATTGGTTTGATTCTGAAA+AGG + chr5_3:1962034-1962053 Msa0791120:intron 30.0%
ACACAGAGATTTATGTGAAT+TGG + chr5_3:1962332-1962351 Msa0791120:intron 30.0%
AGTGATATACATATTGAGCT+CGG - chr5_3:1962434-1962453 None:intergenic 30.0%
TTTCTGTAGTATTTGTCAAC+TGG + chr5_3:1962959-1962978 Msa0791120:intron 30.0%
! TTTGCTGTAACTGTATACAA+AGG - chr5_3:1963018-1963037 None:intergenic 30.0%
TTGTATACAGTTACAGCAAA+TGG + chr5_3:1963018-1963037 Msa0791120:intron 30.0%
TGTATACAGTTACAGCAAAT+GGG + chr5_3:1963019-1963038 Msa0791120:intron 30.0%
! CCTTGAAATGTTTTGTAAGT+TGG - chr5_3:1963088-1963107 None:intergenic 30.0%
CCAACTTACAAAACATTTCA+AGG + chr5_3:1963085-1963104 Msa0791120:CDS 30.0%
TGTTTACTTCTACTATGTAG+TGG + chr5_3:1963115-1963134 Msa0791120:intron 30.0%
TCTCTCATTATTTCAACTTC+TGG + chr5_3:1963190-1963209 Msa0791120:intron 30.0%
! AAATCTGCATATTTCTACTG+TGG + chr5_3:1963263-1963282 Msa0791120:intron 30.0%
AAAACTAGTCACCAATTGAT+AGG - chr5_3:1963426-1963445 None:intergenic 30.0%
! TTGTTAAACATCAGCTTTAG+TGG + chr5_3:1963474-1963493 Msa0791120:intron 30.0%
! ACAGAATGTTTCTATGAGTA+TGG - chr5_3:1963612-1963631 None:intergenic 30.0%
ATTATACAAGTCCTTTGATG+TGG + chr5_3:1963842-1963861 Msa0791120:intron 30.0%
AGAAAGATAGTGTCACATAA+CGG - chr5_3:1963898-1963917 None:intergenic 30.0%
TTATGTGACACTATCTTTCT+TGG + chr5_3:1963898-1963917 Msa0791120:intron 30.0%
!!! TCTTGGTTGCTTCATTTTTT+TGG + chr5_3:1963915-1963934 Msa0791120:intron 30.0%
!! ATTTTTCAATATTCAGAGGG+GGG - chr5_3:1964117-1964136 None:intergenic 30.0%
CGATGATGTTAAAGCTTAAA+AGG - chr5_3:1964198-1964217 None:intergenic 30.0%
! GTTAGACTTAGGAGTATAAT+AGG - chr5_3:1964303-1964322 None:intergenic 30.0%
GTTATACATTATGGATGAGT+TGG - chr5_3:1964556-1964575 None:intergenic 30.0%
! TGACAAAGTATCTAACTTCT+GGG - chr5_3:1964593-1964612 None:intergenic 30.0%
! TTGACAAAGTATCTAACTTC+TGG - chr5_3:1964594-1964613 None:intergenic 30.0%
ACCCAATTCAAAATCATCAA+TGG - chr5_3:1964694-1964713 None:intergenic 30.0%
!! ATTGATGATTTTGAATTGGG+TGG + chr5_3:1964693-1964712 Msa0791120:intron 30.0%
! GCAAACAAATTTTATGGACA+CGG - chr5_3:1964755-1964774 None:intergenic 30.0%
!! TAATGATTTTGACATACCTG+TGG - chr5_3:1964890-1964909 None:intergenic 30.0%
CCCTCACATTTATAAATAGT+AGG - chr5_3:1964916-1964935 None:intergenic 30.0%
GGGTCATGTCAAATAAATAT+CGG + chr5_3:1964934-1964953 Msa0791120:intron 30.0%
ACTTTCTCCTATCTAAATGT+AGG + chr5_3:1965047-1965066 Msa0791120:intron 30.0%
CTTTCTCCTATCTAAATGTA+GGG + chr5_3:1965048-1965067 Msa0791120:intron 30.0%
TTTCTCCTATCTAAATGTAG+GGG + chr5_3:1965049-1965068 Msa0791120:intron 30.0%
! TGATTTGGCTAAGAAACTTT+GGG + chr5_3:1965179-1965198 Msa0791120:intron 30.0%
TTACAAGAGGTCCATATTAA+GGG - chr5_3:1965406-1965425 None:intergenic 30.0%
ATTACAAGAGGTCCATATTA+AGG - chr5_3:1965407-1965426 None:intergenic 30.0%
TAATATGGACCTCTTGTAAT+AGG + chr5_3:1965407-1965426 Msa0791120:intron 30.0%
AATATGGACCTCTTGTAATA+GGG + chr5_3:1965408-1965427 Msa0791120:intron 30.0%
! GGCAATATTGAGTTTGATTT+AGG - chr5_3:1965449-1965468 None:intergenic 30.0%
!!! ATATTGCCCTTTTTGTTGTT+TGG + chr5_3:1965461-1965480 Msa0791120:intron 30.0%
AAAATACTTGTGTGACATTG+TGG + chr5_3:1965591-1965610 Msa0791120:intron 30.0%
AATATGAATATCTACAGTGG+AGG - chr5_3:1966048-1966067 None:intergenic 30.0%
CTGAATATGAATATCTACAG+TGG - chr5_3:1966051-1966070 None:intergenic 30.0%
ATTGAATCACATGCCTAAAA+AGG + chr5_3:1966141-1966160 Msa0791120:intron 30.0%
TTAAACGAGAAGTTCATATG+AGG + chr5_3:1966344-1966363 Msa0791120:intron 30.0%
TAAACGAGAAGTTCATATGA+GGG + chr5_3:1966345-1966364 Msa0791120:intron 30.0%
ACTGCAATTGCAATATATCT+CGG + chr5_3:1967059-1967078 Msa0791120:CDS 30.0%
CTCTGATGTGTAAATTCAAA+CGG + chr5_3:1967343-1967362 Msa0791120:intron 30.0%
! ATCACATAAGCATAGGTTTT+AGG + chr5_3:1967724-1967743 Msa0791120:intron 30.0%
ATTGGATAGAGTCAAATATG+GGG - chr5_3:1967790-1967809 None:intergenic 30.0%
AACACAAAAAAGTGGTATTG+TGG - chr5_3:1967820-1967839 None:intergenic 30.0%
AATAACTTGAGTTTGATTCC+TGG - chr5_3:1967918-1967937 None:intergenic 30.0%
!! TTCTGAACAATTCGTTTTTG+GGG + chr5_3:1967936-1967955 Msa0791120:intron 30.0%
! ATGGTTTGTGAATCTAATTC+TGG + chr5_3:1968142-1968161 Msa0791120:intron 30.0%
! TGGTTTGTGAATCTAATTCT+GGG + chr5_3:1968143-1968162 Msa0791120:intron 30.0%
ATATACAGGGTTTCAAATTG+TGG - chr5_3:1968228-1968247 None:intergenic 30.0%
TATATGGACATTGTGATAAC+AGG + chr5_3:1968308-1968327 Msa0791120:intron 30.0%
TGTCAAAGAAACAATACTCA+AGG + chr5_3:1968427-1968446 Msa0791120:CDS 30.0%
TACAGTATCGTTTAATGCAA+AGG + chr5_3:1968984-1969003 Msa0791120:intron 30.0%
! TCTCTTGACAAATCTTTTGT+TGG + chr5_3:1961754-1961773 Msa0791120:CDS 30.0%
AAGCAATCCTATAGAGTTTA+TGG - chr5_3:1969692-1969711 None:intergenic 30.0%
ATCATATAAGTGCGTATGTA+TGG - chr5_3:1969811-1969830 None:intergenic 30.0%
GTACATAACAAGCAAAGTTA+AGG - chr5_3:1969882-1969901 None:intergenic 30.0%
TGTGAGTAAATATGTCAGTT+TGG + chr5_3:1970039-1970058 Msa0791120:intron 30.0%
AAATGTACTCTACATAATGG+TGG - chr5_3:1970316-1970335 None:intergenic 30.0%
!! TGAGTTTTATGAATGTTAGC+TGG + chr5_3:1970611-1970630 Msa0791120:intron 30.0%
TTATGCAGGTCTAATAAATG+TGG + chr5_3:1970640-1970659 Msa0791120:intron 30.0%
AGTTAAATCAGTATGTCCTA+TGG + chr5_3:1970698-1970717 Msa0791120:intron 30.0%
TCTCTGACATTTATAACCAT+AGG - chr5_3:1970717-1970736 None:intergenic 30.0%
CTAACAACATTCTCTCTTAT+TGG + chr5_3:1970846-1970865 Msa0791120:intron 30.0%
AATTAAAGTGGAAAACGTGA+TGG - chr5_3:1970977-1970996 None:intergenic 30.0%
! TTTCATGATGGAATTGCATT+GGG - chr5_3:1971006-1971025 None:intergenic 30.0%
!! TTTTCATGATGGAATTGCAT+TGG - chr5_3:1971007-1971026 None:intergenic 30.0%
! AAGCTTCTCTATTTTCATGA+TGG - chr5_3:1971018-1971037 None:intergenic 30.0%
! TCCTTATTCCAATTGTTGTT+GGG + chr5_3:1971136-1971155 Msa0791120:intron 30.0%
ACTTATACAAGGAATCCTAT+AGG - chr5_3:1971322-1971341 None:intergenic 30.0%
GCTCCCTACATTAATAAAAT+TGG - chr5_3:1971393-1971412 None:intergenic 30.0%
!! TCTTTGATAATGACATATGG+TGG + chr5_3:1971698-1971717 Msa0791120:three_prime_UTR 30.0%
CATGATGAAAAGCTAGTACA+AGG - chr5_3:1960166-1960185 None:intergenic 35.0%
!!! CTTGTACTAGCTTTTCATCA+TGG + chr5_3:1960164-1960183 Msa0791120:intron 35.0%
TTGCATGAATTTGATGTAGC+AGG - chr5_3:1960326-1960345 None:intergenic 35.0%
CTACATCAAATTCATGCAAC+TGG + chr5_3:1960327-1960346 Msa0791120:intron 35.0%
GGATATGATGGTATGTTAAC+AGG + chr5_3:1960369-1960388 Msa0791120:intron 35.0%
TTCTAACAGCCATAATCACA+TGG - chr5_3:1960449-1960468 None:intergenic 35.0%
! CTCTTTAAGTATTGCTTCTC+TGG - chr5_3:1960493-1960512 None:intergenic 35.0%
CTTGATGTAAGAAGAGAAAG+TGG + chr5_3:1960617-1960636 Msa0791120:intron 35.0%
! TTTACAGTGTTGAACCAACT+TGG - chr5_3:1961019-1961038 None:intergenic 35.0%
TAAAAGGCAAAACTGCATCA+GGG - chr5_3:1961087-1961106 None:intergenic 35.0%
ATAAAAGGCAAAACTGCATC+AGG - chr5_3:1961088-1961107 None:intergenic 35.0%
TACTGGAACATAGACATTCA+TGG - chr5_3:1961170-1961189 None:intergenic 35.0%
TCAGAAAACAACACTACTAC+TGG - chr5_3:1961217-1961236 None:intergenic 35.0%
! TGTCATTGGAAAGCATGAAA+GGG - chr5_3:1961286-1961305 None:intergenic 35.0%
! TTGTCATTGGAAAGCATGAA+AGG - chr5_3:1961287-1961306 None:intergenic 35.0%
ATCTTTCCGTGAAAATTGTG+AGG + chr5_3:1961460-1961479 Msa0791120:intron 35.0%
TCTTTCCGTGAAAATTGTGA+GGG + chr5_3:1961461-1961480 Msa0791120:intron 35.0%
ACAAGTCACAGTAGTTTCTA+GGG + chr5_3:1961502-1961521 Msa0791120:intron 35.0%
TCTGTCTCAACTTATATAGC+TGG + chr5_3:1961685-1961704 Msa0791120:intron 35.0%
CTGTCTCAACTTATATAGCT+GGG + chr5_3:1961686-1961705 Msa0791120:intron 35.0%
!!! TTTTAGTTTGCTGTGAGTCT+AGG + chr5_3:1962090-1962109 Msa0791120:intron 35.0%
AAAAGCAAAATCGTATCAGC+AGG - chr5_3:1962150-1962169 None:intergenic 35.0%
! TATTTGTTAAGGTGCTTCCA+TGG - chr5_3:1962374-1962393 None:intergenic 35.0%
ATTTCTTGCAACTCTTGAGT+GGG - chr5_3:1962467-1962486 None:intergenic 35.0%
! GTGTGATCATTTTATGTGTG+AGG - chr5_3:1962515-1962534 None:intergenic 35.0%
GTCAAGCTACTTGAAAATGT+GGG - chr5_3:1962686-1962705 None:intergenic 35.0%
AGTCAAGCTACTTGAAAATG+TGG - chr5_3:1962687-1962706 None:intergenic 35.0%
! GTAGTACTTGTTGAAAGAAG+AGG + chr5_3:1962844-1962863 Msa0791120:intron 35.0%
GTTGCATGAAGAATTAAGAG+TGG + chr5_3:1962929-1962948 Msa0791120:intron 35.0%
GTATACAGTTACAGCAAATG+GGG + chr5_3:1963020-1963039 Msa0791120:intron 35.0%
!! TTTTTCAGAGACCTGAATGA+AGG - chr5_3:1963561-1963580 None:intergenic 35.0%
ATGTGGCAAAACCATCAAAA+GGG - chr5_3:1963654-1963673 None:intergenic 35.0%
AATGTGGCAAAACCATCAAA+AGG - chr5_3:1963655-1963674 None:intergenic 35.0%
TTACATCTTGATCAGGATGA+TGG + chr5_3:1963703-1963722 Msa0791120:intron 35.0%
ATTGCAAATTCTCTTCATCC+AGG + chr5_3:1963736-1963755 Msa0791120:CDS 35.0%
! CATTTAGAATGCCACATCAA+AGG - chr5_3:1963856-1963875 None:intergenic 35.0%
! AAAGCTTAAAAGGTTGATCG+CGG - chr5_3:1964188-1964207 None:intergenic 35.0%
GCTAAAGTGACTAATACTGA+AGG + chr5_3:1964495-1964514 Msa0791120:intron 35.0%
! TTTGAATTGGGTGGTTTTTC+TGG + chr5_3:1964702-1964721 Msa0791120:intron 35.0%
ACAGGTATAGTAAATGTGGT+TGG + chr5_3:1964842-1964861 Msa0791120:intron 35.0%
TTCTCCTATCTAAATGTAGG+GGG + chr5_3:1965050-1965069 Msa0791120:intron 35.0%
!! CTGATTTGGCTAAGAAACTT+TGG + chr5_3:1965178-1965197 Msa0791120:intron 35.0%
TTGGGATTTCAGCATGAATT+TGG + chr5_3:1965197-1965216 Msa0791120:intron 35.0%
TTTCAGCATGAATTTGGTCA+AGG + chr5_3:1965203-1965222 Msa0791120:intron 35.0%
TGAAATAGGGTCCCTTAATA+TGG + chr5_3:1965392-1965411 Msa0791120:intron 35.0%
! TAAGTGCATTTAGAGTGAAG+TGG + chr5_3:1965558-1965577 Msa0791120:intron 35.0%
TACAATTACTCAGTCAGTCA+GGG - chr5_3:1965860-1965879 None:intergenic 35.0%
TGTACAACCAATTTAACGCA+CGG - chr5_3:1965946-1965965 None:intergenic 35.0%
AGTGGAGGAAGACAAAAAAT+TGG - chr5_3:1966033-1966052 None:intergenic 35.0%
! CTTACGATGTGTTCCTTTTT+AGG - chr5_3:1966157-1966176 None:intergenic 35.0%
TAATAGAGGCTAGACTTTGA+GGG - chr5_3:1966238-1966257 None:intergenic 35.0%
ACAAAGGTTGAGACTAATAG+AGG - chr5_3:1966252-1966271 None:intergenic 35.0%
CTGCAATTGCAATATATCTC+GGG + chr5_3:1967060-1967079 Msa0791120:CDS 35.0%
!!! AAGGTGTTTCTGGTTTTTCA+TGG + chr5_3:1967148-1967167 Msa0791120:CDS 35.0%
AAAGAAACAGGAAGAGAGTA+TGG - chr5_3:1967244-1967263 None:intergenic 35.0%
! GTTTTGCATCACATAAGCAT+AGG + chr5_3:1967717-1967736 Msa0791120:intron 35.0%
TTGGATAGAGTCAAATATGG+GGG - chr5_3:1967789-1967808 None:intergenic 35.0%
ACAAAAAAGTGGTATTGTGG+AGG - chr5_3:1967817-1967836 None:intergenic 35.0%
!!! ACTTTTTTGTGTTAACCCTC+CGG + chr5_3:1967827-1967846 Msa0791120:intron 35.0%
CAAACATTCCTTACAAACTC+CGG - chr5_3:1967879-1967898 None:intergenic 35.0%
ATTCCTGGTGAAACAATTCT+TGG - chr5_3:1967903-1967922 None:intergenic 35.0%
!! TATCCCTTTAAAACCACTAG+TGG + chr5_3:1967984-1968003 Msa0791120:intron 35.0%
TTATTTACTACCACCACTAG+TGG - chr5_3:1968000-1968019 None:intergenic 35.0%
TATTCTGCTGGATATCCATA+AGG + chr5_3:1968110-1968129 Msa0791120:intron 35.0%
GATGTGTGACTATTGTAATG+CGG + chr5_3:1968285-1968304 Msa0791120:intron 35.0%
GACTATTGTAATGCGGTATA+TGG + chr5_3:1968292-1968311 Msa0791120:intron 35.0%
GCATCTGAGTATAATTCTTC+TGG + chr5_3:1968518-1968537 Msa0791120:CDS 35.0%
TCTTACATCAAGATGTTCAG+CGG - chr5_3:1968548-1968567 None:intergenic 35.0%
TGTCTTTGGACAAACTGAAA+GGG - chr5_3:1968792-1968811 None:intergenic 35.0%
TTGTCTTTGGACAAACTGAA+AGG - chr5_3:1968793-1968812 None:intergenic 35.0%
CTGAAGTTCAATGTTGTCTT+TGG - chr5_3:1968806-1968825 None:intergenic 35.0%
TTACCACATACCTATGTGAT+TGG - chr5_3:1968836-1968855 None:intergenic 35.0%
ACACGCAAAAGTAAGAAAGA+AGG + chr5_3:1969107-1969126 Msa0791120:CDS 35.0%
CTTATACAGTTACAGCAGAT+GGG + chr5_3:1969314-1969333 Msa0791120:intron 35.0%
TTATACAGTTACAGCAGATG+GGG + chr5_3:1969315-1969334 Msa0791120:intron 35.0%
CCAAAACATTAAGACAAGTG+AGG - chr5_3:1969470-1969489 None:intergenic 35.0%
! CCTCACTTGTCTTAATGTTT+TGG + chr5_3:1969467-1969486 Msa0791120:intron 35.0%
TAAAAAGGATGTCCTTAGGT+AGG + chr5_3:1969498-1969517 Msa0791120:intron 35.0%
AAAGAACACATACCTACCTA+AGG - chr5_3:1969513-1969532 None:intergenic 35.0%
!! TTCATTCTTGACTTTTTGGG+TGG + chr5_3:1969997-1970016 Msa0791120:intron 35.0%
ATTACTTCTCCATCATGATC+AGG + chr5_3:1970097-1970116 Msa0791120:intron 35.0%
ACTGTTATGTCGGAAAAGAT+TGG - chr5_3:1970174-1970193 None:intergenic 35.0%
ATATGAATTATGCAGGTCAC+AGG + chr5_3:1970250-1970269 Msa0791120:intron 35.0%
ATTACAATGGTCATTCTGAG+TGG - chr5_3:1970497-1970516 None:intergenic 35.0%
!! CACTCACAAGCCTTTAAAAT+TGG + chr5_3:1970547-1970566 Msa0791120:intron 35.0%
!!! TTAGCTGGTTTGTTTTATGC+AGG + chr5_3:1970626-1970645 Msa0791120:intron 35.0%
CAGGTCTAATAAATGTGGTT+GGG + chr5_3:1970645-1970664 Msa0791120:intron 35.0%
!! TACTGATTTAACTTACCTGC+TGG - chr5_3:1970691-1970710 None:intergenic 35.0%
TAACTTTGTGTACGGAAAGA+AGG + chr5_3:1970822-1970841 Msa0791120:intron 35.0%
AACTTTGTGTACGGAAAGAA+GGG + chr5_3:1970823-1970842 Msa0791120:intron 35.0%
!!! AGATCCCATTATTTTGGGAA+TGG + chr5_3:1970882-1970901 Msa0791120:intron 35.0%
GGATCCATTCCCAAAATAAT+GGG - chr5_3:1970889-1970908 None:intergenic 35.0%
! TAGGTCTCACCATTTTATGT+GGG - chr5_3:1970910-1970929 None:intergenic 35.0%
ATTGGGAAGTGGAATTAAAG+TGG - chr5_3:1970989-1971008 None:intergenic 35.0%
AAGCTTCAAATTGGAGAGTT+TGG + chr5_3:1971032-1971051 Msa0791120:intron 35.0%
! AGTTTGGAAAAACGTGGTTT+TGG + chr5_3:1971048-1971067 Msa0791120:intron 35.0%
GTCCTTATTCCAATTGTTGT+TGG + chr5_3:1971135-1971154 Msa0791120:intron 35.0%
ACCCAACAACAATTGGAATA+AGG - chr5_3:1971140-1971159 None:intergenic 35.0%
! TGATTTGGCAAAGAAACTCT+GGG + chr5_3:1971518-1971537 Msa0791120:CDS 35.0%
! TCATATTTTTCCCTCTGCAT+AGG + chr5_3:1971743-1971762 Msa0791120:three_prime_UTR 35.0%
GTTACTCAAACTAGCTAGTG+AGG + chr5_3:1959885-1959904 Msa0791120:five_prime_UTR 40.0%
ACTAGCTAGTGAGGTTGTAA+CGG + chr5_3:1959894-1959913 Msa0791120:five_prime_UTR 40.0%
!!! AAGGGGTATCTGGATTTTCA+TGG + chr5_3:1959955-1959974 Msa0791120:CDS 40.0%
ACAGCTGAAGAAGTTACTCA+TGG + chr5_3:1959984-1960003 Msa0791120:CDS 40.0%
ACTCATGGAATTGATGCAAC+TGG + chr5_3:1959999-1960018 Msa0791120:CDS 40.0%
TGGATACATAGTTAGGCTTG+AGG + chr5_3:1960184-1960203 Msa0791120:intron 40.0%
CTGACTATGCCAATTTCAAC+AGG - chr5_3:1960272-1960291 None:intergenic 40.0%
CTGTTGAAATTGGCATAGTC+AGG + chr5_3:1960270-1960289 Msa0791120:intron 40.0%
ACATGGTGTCCATGTGATTA+TGG + chr5_3:1960437-1960456 Msa0791120:CDS 40.0%
GGAGTTAGATCTCAGTTCAT+TGG + chr5_3:1960539-1960558 Msa0791120:CDS 40.0%
GCATCCGAATTTAATTCCTC+TGG + chr5_3:1960579-1960598 Msa0791120:CDS 40.0%
TGTAAGAAGAGAAAGTGGCA+TGG + chr5_3:1960622-1960641 Msa0791120:intron 40.0%
!! TTGTAGCCTTGTTGTCAATG+AGG + chr5_3:1960902-1960921 Msa0791120:intron 40.0%
!! TGTAGCCTTGTTGTCAATGA+GGG + chr5_3:1960903-1960922 Msa0791120:intron 40.0%
TTAGACCCTCATTGACAACA+AGG - chr5_3:1960911-1960930 None:intergenic 40.0%
TGTTGTCAATGAGGGTCTAA+TGG + chr5_3:1960911-1960930 Msa0791120:intron 40.0%
AGTGAACTAAGACTCCAAGT+TGG + chr5_3:1961002-1961021 Msa0791120:intron 40.0%
AAAAGGCAAAACTGCATCAG+GGG - chr5_3:1961086-1961105 None:intergenic 40.0%
GTGATTGGAAGAAACAATGC+AGG + chr5_3:1961248-1961267 Msa0791120:intron 40.0%
AAGAAACAATGCAGGAGTCA+TGG + chr5_3:1961256-1961275 Msa0791120:intron 40.0%
CTGTAGTTCGATGTTGTCAT+TGG - chr5_3:1961300-1961319 None:intergenic 40.0%
CACAAGTCACAGTAGTTTCT+AGG + chr5_3:1961501-1961520 Msa0791120:intron 40.0%
TGTCAAGAGAAAATGACCTG+TGG - chr5_3:1961744-1961763 None:intergenic 40.0%
GCTAGTGAAAGTAAGACTGA+AGG + chr5_3:1961794-1961813 Msa0791120:CDS 40.0%
TGCAAATTTGTGAGCTTCTG+AGG - chr5_3:1961837-1961856 None:intergenic 40.0%
TCAGACGCAGTTAGAATTGT+TGG + chr5_3:1962219-1962238 Msa0791120:intron 40.0%
ATCAAAGATTCATGGGTGTG+TGG - chr5_3:1962273-1962292 None:intergenic 40.0%
CATTTCTTGCAACTCTTGAG+TGG - chr5_3:1962468-1962487 None:intergenic 40.0%
!! ACATTCCTCTCTCTAAGACA+TGG + chr5_3:1962537-1962556 Msa0791120:intron 40.0%
CATGTGAAGAGTGGATGTAT+TGG - chr5_3:1962566-1962585 None:intergenic 40.0%
ATCCACTCTTCACATGATCA+AGG + chr5_3:1962570-1962589 Msa0791120:intron 40.0%
AACCTTGATCATGTGAAGAG+TGG - chr5_3:1962575-1962594 None:intergenic 40.0%
ACTCTTCACATGATCAAGGT+TGG + chr5_3:1962574-1962593 Msa0791120:intron 40.0%
CTCTTCACATGATCAAGGTT+GGG + chr5_3:1962575-1962594 Msa0791120:intron 40.0%
TCTTCACATGATCAAGGTTG+GGG + chr5_3:1962576-1962595 Msa0791120:intron 40.0%
TCATCCCGTCCTGTAAATAA+GGG - chr5_3:1962624-1962643 None:intergenic 40.0%
TCTGCAATGTGAACTGTGAA+TGG + chr5_3:1963299-1963318 Msa0791120:intron 40.0%
AGATAGCAGATGCTGCAAAA+AGG - chr5_3:1963397-1963416 None:intergenic 40.0%
AACTAAAGCCTGTTCCAACT+AGG - chr5_3:1963529-1963548 None:intergenic 40.0%
! TTGGAACAGGCTTTAGTTGT+TGG + chr5_3:1963531-1963550 Msa0791120:intron 40.0%
! TTGTTGGTGTTCCTTCATTC+AGG + chr5_3:1963547-1963566 Msa0791120:intron 40.0%
! ACGCAAATTTTGCATCCCTT+TGG + chr5_3:1963582-1963601 Msa0791120:intron 40.0%
! CGCAAATTTTGCATCCCTTT+GGG + chr5_3:1963583-1963602 Msa0791120:intron 40.0%
TATGAGTATGGTTGCCCAAA+GGG - chr5_3:1963600-1963619 None:intergenic 40.0%
GTTATGACGGTAAAGATTGG+TGG - chr5_3:1963770-1963789 None:intergenic 40.0%
GCTGTTATGACGGTAAAGAT+TGG - chr5_3:1963773-1963792 None:intergenic 40.0%
TCATCCATCTACATTGCTCT+AGG + chr5_3:1964015-1964034 Msa0791120:intron 40.0%
AACACCTAGAGCAATGTAGA+TGG - chr5_3:1964022-1964041 None:intergenic 40.0%
!! TGGTTTGTTTGTTTGCTCAC+TGG + chr5_3:1964722-1964741 Msa0791120:intron 40.0%
TGTGATGAAAAACGTTCCAC+AGG + chr5_3:1964871-1964890 Msa0791120:CDS 40.0%
CAATGCTACATAGCATGTTG+TGG - chr5_3:1965079-1965098 None:intergenic 40.0%
CACTAACTCCATTCACTTGT+GGG - chr5_3:1965104-1965123 None:intergenic 40.0%
TGGCCAAATCAAGTTCACAT+GGG + chr5_3:1965148-1965167 Msa0791120:intron 40.0%
CAAATCAAGTTCACATGGGA+GGG + chr5_3:1965152-1965171 Msa0791120:intron 40.0%
TGTTTGGACCCTATTACAAG+AGG - chr5_3:1965419-1965438 None:intergenic 40.0%
CTTGTAATAGGGTCCAAACA+TGG + chr5_3:1965419-1965438 Msa0791120:intron 40.0%
TGATTTAGGAGGTCCATGTT+TGG - chr5_3:1965435-1965454 None:intergenic 40.0%
TTAGAGTGAAGTGGTAGACT+AGG + chr5_3:1965567-1965586 Msa0791120:intron 40.0%
TAGAGTGAAGTGGTAGACTA+GGG + chr5_3:1965568-1965587 Msa0791120:intron 40.0%
CTACAATTACTCAGTCAGTC+AGG - chr5_3:1965861-1965880 None:intergenic 40.0%
AATTTAACGCACGGAAGAGT+TGG - chr5_3:1965937-1965956 None:intergenic 40.0%
AACTCTTCCGTGCGTTAAAT+TGG + chr5_3:1965936-1965955 Msa0791120:intron 40.0%
TCAGTGCGAATTTCGATAGA+TGG - chr5_3:1966116-1966135 None:intergenic 40.0%
CTAATAGAGGCTAGACTTTG+AGG - chr5_3:1966239-1966258 None:intergenic 40.0%
ACGTGACGCTACTATATATC+TGG - chr5_3:1967024-1967043 None:intergenic 40.0%
AGAGACTGATACGCAATATG+TGG + chr5_3:1967112-1967131 Msa0791120:CDS 40.0%
GAAACACCTTTCTTGCTGAA+TGG - chr5_3:1967138-1967157 None:intergenic 40.0%
!! TTCAGCAAGAAAGGTGTTTC+TGG + chr5_3:1967138-1967157 Msa0791120:CDS 40.0%
ACTGCTGAACAAGTTACACA+TGG + chr5_3:1967177-1967196 Msa0791120:CDS 40.0%
TATGGACCAACCAGTAACAA+TGG - chr5_3:1967226-1967245 None:intergenic 40.0%
! GCATGAAGAGATACCCTTTT+GGG - chr5_3:1967278-1967297 None:intergenic 40.0%
! TGCATGAAGAGATACCCTTT+TGG - chr5_3:1967279-1967298 None:intergenic 40.0%
TGGTATTGTGGAGGCTAAAT+TGG - chr5_3:1967808-1967827 None:intergenic 40.0%
GGAGGGTTAACACAAAAAAG+TGG - chr5_3:1967828-1967847 None:intergenic 40.0%
! TTGGTAATCCGGAGTTTGTA+AGG + chr5_3:1967868-1967887 Msa0791120:intron 40.0%
CGGAGTTTGTAAGGAATGTT+TGG + chr5_3:1967877-1967896 Msa0791120:intron 40.0%
TATTACACGATCCAAGCCAT+TGG - chr5_3:1967966-1967985 None:intergenic 40.0%
!!! CCACCACTAGTGGTTTTAAA+GGG - chr5_3:1967990-1968009 None:intergenic 40.0%
!!! ACCACCACTAGTGGTTTTAA+AGG - chr5_3:1967991-1968010 None:intergenic 40.0%
AGGGTTTCAAATTGTGGTTG+TGG - chr5_3:1968222-1968241 None:intergenic 40.0%
CAGTGTAGCATGCATATACA+GGG - chr5_3:1968241-1968260 None:intergenic 40.0%
TCAGTGTAGCATGCATATAC+AGG - chr5_3:1968242-1968261 None:intergenic 40.0%
GATTATGGGTGTGAGAAACA+TGG + chr5_3:1968391-1968410 Msa0791120:CDS 40.0%
ATGGCATCAAGTTTAGCAGA+GGG - chr5_3:1968458-1968477 None:intergenic 40.0%
TGAGCTAAGATCTAACTCCA+TGG - chr5_3:1968477-1968496 None:intergenic 40.0%
GGAGTTAGATCTTAGCTCAT+TGG + chr5_3:1968478-1968497 Msa0791120:CDS 40.0%
CAGTTGATTGGATCTTACTC+CGG - chr5_3:1968877-1968896 None:intergenic 40.0%
AATTGTTAATGTCGCCTCAG+AGG + chr5_3:1969133-1969152 Msa0791120:CDS 40.0%
TCTGCTGTAACTGTATAAGG+AGG - chr5_3:1969313-1969332 None:intergenic 40.0%
CCATCTGCTGTAACTGTATA+AGG - chr5_3:1969316-1969335 None:intergenic 40.0%
CCTTATACAGTTACAGCAGA+TGG + chr5_3:1969313-1969332 Msa0791120:intron 40.0%
!!! GAGGTGTTTTGTAAGTTGGT+TGG - chr5_3:1969379-1969398 None:intergenic 40.0%
!! CCTTGAGGTGTTTTGTAAGT+TGG - chr5_3:1969383-1969402 None:intergenic 40.0%
CCAACTTACAAAACACCTCA+AGG + chr5_3:1969380-1969399 Msa0791120:CDS 40.0%
GTAGAAGTAAGCATACCTTG+AGG - chr5_3:1969398-1969417 None:intergenic 40.0%
AGACTATAGCATGACCTCTT+TGG + chr5_3:1969595-1969614 Msa0791120:intron 40.0%
TCCATCATGATCAGGAAGAT+GGG + chr5_3:1970105-1970124 Msa0791120:intron 40.0%
ACTGCAAATTCTCTTCATCC+AGG + chr5_3:1970137-1970156 Msa0791120:CDS 40.0%
! AGATTGGTGACAATTGTTCC+TGG - chr5_3:1970158-1970177 None:intergenic 40.0%
ATTATGCAGGTCACAGGATT+TGG + chr5_3:1970256-1970275 Msa0791120:intron 40.0%
GCAGGTCTAATAAATGTGGT+TGG + chr5_3:1970644-1970663 Msa0791120:intron 40.0%
TGTGATGAAAAATGTCCAGC+AGG + chr5_3:1970673-1970692 Msa0791120:CDS 40.0%
GGGATCCATTCCCAAAATAA+TGG - chr5_3:1970890-1970909 None:intergenic 40.0%
GGAATGGATCCCACATAAAA+TGG + chr5_3:1970898-1970917 Msa0791120:intron 40.0%
! GTAGGTCTCACCATTTTATG+TGG - chr5_3:1970911-1970930 None:intergenic 40.0%
TTGGAGAGTTTGGAAAAACG+TGG + chr5_3:1971042-1971061 Msa0791120:intron 40.0%
!!! TTGGAAAAACGTGGTTTTGG+TGG + chr5_3:1971051-1971070 Msa0791120:intron 40.0%
!!! TGGAAAAACGTGGTTTTGGT+GGG + chr5_3:1971052-1971071 Msa0791120:intron 40.0%
TAAGTGCCTGTTTGTCATCA+CGG - chr5_3:1971084-1971103 None:intergenic 40.0%
! TGCGATTCTCTTTGTTGTGA+GGG - chr5_3:1971180-1971199 None:intergenic 40.0%
!! CTGATTTGGCAAAGAAACTC+TGG + chr5_3:1971517-1971536 Msa0791120:CDS 40.0%
CTGGGATTTCAGCATCAATT+TGG + chr5_3:1971536-1971555 Msa0791120:CDS 40.0%
!! TAGCATTGACGAGTAACACT+TGG - chr5_3:1971581-1971600 None:intergenic 40.0%
TAGTAAGGATCCTATGCAGA+GGG - chr5_3:1971756-1971775 None:intergenic 40.0%
TACCAGTGACAATAGCAGTG+AGG - chr5_3:1960025-1960044 None:intergenic 45.0%
!! ATGTTAACAGGAGCATCCAG+TGG + chr5_3:1960381-1960400 Msa0791120:intron 45.0%
AGTCTCAACTCCAATACCAC+TGG - chr5_3:1960400-1960419 None:intergenic 45.0%
ACGCGTGTTCTTGCTTTACA+TGG + chr5_3:1960420-1960439 Msa0791120:CDS 45.0%
GATGTTCAATGGAAGACCAG+AGG - chr5_3:1960598-1960617 None:intergenic 45.0%
CAGTTTGCGACAAACCACTT+AGG + chr5_3:1961317-1961336 Msa0791120:CDS 45.0%
TTCCGTGAAAATTGTGAGGG+TGG + chr5_3:1961464-1961483 Msa0791120:intron 45.0%
TCCGTGAAAATTGTGAGGGT+GGG + chr5_3:1961465-1961484 Msa0791120:intron 45.0%
! CAGTAGTTTCTAGGGAGTGA+AGG + chr5_3:1961510-1961529 Msa0791120:intron 45.0%
CAATTCTAACTGCGTCTGAG+TGG - chr5_3:1962218-1962237 None:intergenic 45.0%
! TAAGGTGCTTCCATGGATGT+AGG - chr5_3:1962367-1962386 None:intergenic 45.0%
! GGGATGCTTCAACTTTTCAC+AGG + chr5_3:1962596-1962615 Msa0791120:intron 45.0%
! TCACAGGTCCCCTTATTTAC+AGG + chr5_3:1962612-1962631 Msa0791120:intron 45.0%
! AGGTCCCCTTATTTACAGGA+CGG + chr5_3:1962616-1962635 Msa0791120:intron 45.0%
CATCCCGTCCTGTAAATAAG+GGG - chr5_3:1962623-1962642 None:intergenic 45.0%
CTCATCCCGTCCTGTAAATA+AGG - chr5_3:1962625-1962644 None:intergenic 45.0%
TTCGCAACTAGAACCAACAC+TGG + chr5_3:1962811-1962830 Msa0791120:intron 45.0%
TACAAGAGCAACTCCAGTGT+TGG - chr5_3:1962827-1962846 None:intergenic 45.0%
TACAGCAAATGGGGTGCATA+TGG + chr5_3:1963029-1963048 Msa0791120:CDS 45.0%
TAAAGCCTGTTCCAACTAGG+TGG - chr5_3:1963526-1963545 None:intergenic 45.0%
CTATGAGTATGGTTGCCCAA+AGG - chr5_3:1963601-1963620 None:intergenic 45.0%
GGCAAAACCATCAAAAGGGA+GGG - chr5_3:1963650-1963669 None:intergenic 45.0%
TGGCAAAACCATCAAAAGGG+AGG - chr5_3:1963651-1963670 None:intergenic 45.0%
GCAAATTCTCTTCATCCAGG+AGG + chr5_3:1963739-1963758 Msa0791120:CDS 45.0%
! CGTTGATTGCGCTGTTATGA+CGG - chr5_3:1963783-1963802 None:intergenic 45.0%
CGTCATAACAGCGCAATCAA+CGG + chr5_3:1963781-1963800 Msa0791120:CDS 45.0%
TCTCAGACTCTCAGTGATCA+CGG - chr5_3:1964233-1964252 None:intergenic 45.0%
GAATGGTTGGGGAAGAATAG+TGG - chr5_3:1964620-1964639 None:intergenic 45.0%
CCACTAACTCCATTCACTTG+TGG - chr5_3:1965105-1965124 None:intergenic 45.0%
CCACAAGTGAATGGAGTTAG+TGG + chr5_3:1965102-1965121 Msa0791120:intron 45.0%
GTGGCCAAATCAAGTTCACA+TGG + chr5_3:1965147-1965166 Msa0791120:intron 45.0%
CCTCCCATGTGAACTTGATT+TGG - chr5_3:1965154-1965173 None:intergenic 45.0%
CCAAATCAAGTTCACATGGG+AGG + chr5_3:1965151-1965170 Msa0791120:intron 45.0%
AGGGAGTTGGATTGAAGGAA+TGG - chr5_3:1965841-1965860 None:intergenic 45.0%
ATGTGGCCATTCAGCAAGAA+AGG + chr5_3:1967129-1967148 Msa0791120:CDS 45.0%
ACACATGGAATCGATGCTAC+TGG + chr5_3:1967192-1967211 Msa0791120:CDS 45.0%
TCACTGCCATTGTTACTGGT+TGG + chr5_3:1967217-1967236 Msa0791120:intron 45.0%
TGGCCAAGAATTGTTTCACC+AGG + chr5_3:1967897-1967916 Msa0791120:intron 45.0%
!! TCGTTTTTGGGGAAGTCCAA+TGG + chr5_3:1967947-1967966 Msa0791120:intron 45.0%
!! CCCTTTAAAACCACTAGTGG+TGG + chr5_3:1967987-1968006 Msa0791120:intron 45.0%
CGCGGTGTTCATGTGATTAT+GGG + chr5_3:1968377-1968396 Msa0791120:CDS 45.0%
CATGGCATCAAGTTTAGCAG+AGG - chr5_3:1968459-1968478 None:intergenic 45.0%
CTCTGCTAAACTTGATGCCA+TGG + chr5_3:1968457-1968476 Msa0791120:CDS 45.0%
CAGTTTGCCACCAATCACAT+AGG + chr5_3:1968823-1968842 Msa0791120:CDS 45.0%
CCACATACCTATGTGATTGG+TGG - chr5_3:1968833-1968852 None:intergenic 45.0%
CCACCAATCACATAGGTATG+TGG + chr5_3:1968830-1968849 Msa0791120:intron 45.0%
CACAGGTTCGCATATTCTGA+AGG + chr5_3:1969158-1969177 Msa0791120:CDS 45.0%
!! GCATGACCTCTTTGGCTTTA+CGG + chr5_3:1969603-1969622 Msa0791120:intron 45.0%
CTCCATCATGATCAGGAAGA+TGG + chr5_3:1970104-1970123 Msa0791120:intron 45.0%
CCATCATGATCAGGAAGATG+GGG + chr5_3:1970106-1970125 Msa0791120:intron 45.0%
CGTTCACTGCACTGTTATGT+CGG - chr5_3:1970184-1970203 None:intergenic 45.0%
CGACATAACAGTGCAGTGAA+CGG + chr5_3:1970182-1970201 Msa0791120:CDS 45.0%
TGGTCATTCTGAGTGGTCAT+TGG - chr5_3:1970490-1970509 None:intergenic 45.0%
GATGGAATTGCATTGGGAAG+TGG - chr5_3:1971000-1971019 None:intergenic 45.0%
TATCCACCGTGATGACAAAC+AGG + chr5_3:1971075-1971094 Msa0791120:intron 45.0%
! CCAATTGTTGTTGGGTCTAG+CGG + chr5_3:1971144-1971163 Msa0791120:intron 45.0%
! CTGCGATTCTCTTTGTTGTG+AGG - chr5_3:1971181-1971200 None:intergenic 45.0%
CACTAACTCCCTTCACTTGT+GGG - chr5_3:1971443-1971462 None:intergenic 45.0%
GTGTACAAAACAACCCCACA+TGG + chr5_3:1971486-1971505 Msa0791120:CDS 45.0%
ACAAAACAACCCCACATGGA+AGG + chr5_3:1971490-1971509 Msa0791120:CDS 45.0%
CAAAACAACCCCACATGGAA+GGG + chr5_3:1971491-1971510 Msa0791120:CDS 45.0%
CTAGTAAGGATCCTATGCAG+AGG - chr5_3:1971757-1971776 None:intergenic 45.0%
!! TTTATTAACAAAAAAAATAT+GGG - chr5_3:1966773-1966792 None:intergenic 5.0%
!!! TTTTATTAACAAAAAAAATA+TGG - chr5_3:1966774-1966793 None:intergenic 5.0%
!!! ATAATATTTAAGTTTTTTTT+AGG - chr5_3:1971295-1971314 None:intergenic 5.0%
TCATCATGTGGCCATTCAGC+AGG + chr5_3:1959931-1959950 Msa0791120:exon 50.0%
ATGTGGCCATTCAGCAGGAA+AGG + chr5_3:1959936-1959955 Msa0791120:CDS 50.0%
TGTGGCCATTCAGCAGGAAA+GGG + chr5_3:1959937-1959956 Msa0791120:CDS 50.0%
GATACCCCTTTCCTGCTGAA+TGG - chr5_3:1959945-1959964 None:intergenic 50.0%
!! TTCAGCAGGAAAGGGGTATC+TGG + chr5_3:1959945-1959964 Msa0791120:CDS 50.0%
!! ACAGGAGCATCCAGTGGTAT+TGG + chr5_3:1960387-1960406 Msa0791120:intron 50.0%
!! GGTCTAATGGTGTTGCTGAG+TGG + chr5_3:1960924-1960943 Msa0791120:intron 50.0%
! CCCCACCCTCACAATTTTCA+CGG - chr5_3:1961469-1961488 None:intergenic 50.0%
CCGTGAAAATTGTGAGGGTG+GGG + chr5_3:1961466-1961485 Msa0791120:intron 50.0%
ATTGTGAGGGTGGGGAACTT+TGG + chr5_3:1961474-1961493 Msa0791120:intron 50.0%
TATGACGTGTGTGTTTGGCG+GGG - chr5_3:1961608-1961627 None:intergenic 50.0%
GTATGACGTGTGTGTTTGGC+GGG - chr5_3:1961609-1961628 None:intergenic 50.0%
CGTATGACGTGTGTGTTTGG+CGG - chr5_3:1961610-1961629 None:intergenic 50.0%
CGCCAAACACACACGTCATA+CGG + chr5_3:1961608-1961627 Msa0791120:intron 50.0%
AGCCGTATGACGTGTGTGTT+TGG - chr5_3:1961613-1961632 None:intergenic 50.0%
GGGTGTGTGGCTAACTTTGA+TGG - chr5_3:1962260-1962279 None:intergenic 50.0%
CTTCCATGGATGTAGGCAAG+AGG - chr5_3:1962360-1962379 None:intergenic 50.0%
GGCAACCATGTCTTAGAGAG+AGG - chr5_3:1962545-1962564 None:intergenic 50.0%
! GGTCCCCTTATTTACAGGAC+GGG + chr5_3:1962617-1962636 Msa0791120:intron 50.0%
TAGGTGGAGTTGGAATGGAG+GGG - chr5_3:1963510-1963529 None:intergenic 50.0%
CTAGGTGGAGTTGGAATGGA+GGG - chr5_3:1963511-1963530 None:intergenic 50.0%
ACTAGGTGGAGTTGGAATGG+AGG - chr5_3:1963512-1963531 None:intergenic 50.0%
CCAACTAGGTGGAGTTGGAA+TGG - chr5_3:1963515-1963534 None:intergenic 50.0%
CCATTCCAACTCCACCTAGT+TGG + chr5_3:1963512-1963531 Msa0791120:intron 50.0%
CTGTTCCAACTAGGTGGAGT+TGG - chr5_3:1963520-1963539 None:intergenic 50.0%
CAACTCCACCTAGTTGGAAC+AGG + chr5_3:1963518-1963537 Msa0791120:intron 50.0%
GCTGCCCCCTACATTTAGAT+AGG - chr5_3:1965057-1965076 None:intergenic 50.0%
GCATTGCACCCACAAGTGAA+TGG + chr5_3:1965093-1965112 Msa0791120:intron 50.0%
! ACATGGGAGGGATGCTGATT+TGG + chr5_3:1965164-1965183 Msa0791120:intron 50.0%
TCCAAAAGAACCCCACTCTG+AGG + chr5_3:1965796-1965815 Msa0791120:intron 50.0%
! TCCTCAGAGTGGGGTTCTTT+TGG - chr5_3:1965800-1965819 None:intergenic 50.0%
TTGTCCTCACTCCTCAGAGT+GGG - chr5_3:1965810-1965829 None:intergenic 50.0%
CAGTCAGGGAGTTGGATTGA+AGG - chr5_3:1965846-1965865 None:intergenic 50.0%
TACTCAGTCAGTCAGGGAGT+TGG - chr5_3:1965854-1965873 None:intergenic 50.0%
! GGGAGCATACATGAACTCGT+TGG + chr5_3:1966603-1966622 Msa0791120:intron 50.0%
!! GTCCCTGCTTTTGTGACACA+CGG + chr5_3:1967082-1967101 Msa0791120:CDS 50.0%
TGCCGTGTGTCACAAAAGCA+GGG - chr5_3:1967087-1967106 None:intergenic 50.0%
GGTCTCACTGCCATTGTTAC+TGG + chr5_3:1967213-1967232 Msa0791120:CDS 50.0%
! GAGAAAGGGGCTTGGTAATC+CGG + chr5_3:1967857-1967876 Msa0791120:intron 50.0%
TTTGGGGAAGTCCAATGGCT+TGG + chr5_3:1967952-1967971 Msa0791120:intron 50.0%
!! GTGATAACAGGAGCATCCAG+CGG + chr5_3:1968320-1968339 Msa0791120:intron 50.0%
GCGCGGTGTTCATGTGATTA+TGG + chr5_3:1968376-1968395 Msa0791120:CDS 50.0%
TACAGCAGATGGGGTGCATA+TGG + chr5_3:1969324-1969343 Msa0791120:CDS 50.0%
AACAGGCCGTAAAGCCAAAG+AGG - chr5_3:1969612-1969631 None:intergenic 50.0%
!! CTTTGGCTTTACGGCCTGTT+TGG + chr5_3:1969612-1969631 Msa0791120:intron 50.0%
CCCCATCTTCCTGATCATGA+TGG - chr5_3:1970109-1970128 None:intergenic 50.0%
TCATGATCAGGAAGATGGGG+TGG + chr5_3:1970109-1970128 Msa0791120:intron 50.0%
CCGCTAGACCCAACAACAAT+TGG - chr5_3:1971147-1971166 None:intergenic 50.0%
AGCATTGCACCCACAAGTGA+AGG + chr5_3:1965092-1965111 Msa0791120:intron 50.0%
GCATTGCACCCACAAGTGAA+GGG + chr5_3:1965093-1965112 Msa0791120:intron 50.0%
CCACTAACTCCCTTCACTTG+TGG - chr5_3:1971444-1971463 None:intergenic 50.0%
CCACAAGTGAAGGGAGTTAG+TGG + chr5_3:1971441-1971460 Msa0791120:CDS 50.0%
AATCAGCGTCCCTTCCATGT+GGG - chr5_3:1971503-1971522 None:intergenic 50.0%
AAATCAGCGTCCCTTCCATG+TGG - chr5_3:1971504-1971523 None:intergenic 50.0%
! ACATGGAAGGGACGCTGATT+TGG + chr5_3:1971503-1971522 Msa0791120:CDS 50.0%
GTGGCCATTCAGCAGGAAAG+GGG + chr5_3:1959938-1959957 Msa0791120:CDS 55.0%
GGCCTCACTGCTATTGTCAC+TGG + chr5_3:1960020-1960039 Msa0791120:CDS 55.0%
ATGACGTGTGTGTTTGGCGG+GGG - chr5_3:1961607-1961626 None:intergenic 55.0%
ACTGCGTCTGAGTGGTGCAT+AGG - chr5_3:1962210-1962229 None:intergenic 55.0%
GCACCTCTTGCCTACATCCA+TGG + chr5_3:1962354-1962373 Msa0791120:intron 55.0%
AGGTGGAGTTGGAATGGAGG+GGG - chr5_3:1963509-1963528 None:intergenic 55.0%
! GCAGTCTCCCTCCCTTTTGA+TGG + chr5_3:1963640-1963659 Msa0791120:intron 55.0%
! AGATTGGTGGCAATGCCTCC+TGG - chr5_3:1963757-1963776 None:intergenic 55.0%
TGTCCTCACTCCTCAGAGTG+GGG - chr5_3:1965809-1965828 None:intergenic 55.0%
CTTGTCCTCACTCCTCAGAG+TGG - chr5_3:1965811-1965830 None:intergenic 55.0%
! CTCTGAGGAGTGAGGACAAG+AGG + chr5_3:1965811-1965830 Msa0791120:intron 55.0%
!! AACGCACGGAAGAGTTGGTG+AGG - chr5_3:1965932-1965951 None:intergenic 55.0%
CTGCCGTGTGTCACAAAAGC+AGG - chr5_3:1967088-1967107 None:intergenic 55.0%
GTGTTAACCCTCCGGTTCTC+AGG + chr5_3:1967835-1967854 Msa0791120:intron 55.0%
CCTTTCTCCTGAGAACCGGA+GGG - chr5_3:1967845-1967864 None:intergenic 55.0%
CCTCCGGTTCTCAGGAGAAA+GGG + chr5_3:1967843-1967862 Msa0791120:intron 55.0%
CTCCGGTTCTCAGGAGAAAG+GGG + chr5_3:1967844-1967863 Msa0791120:intron 55.0%
AGCCCCTTTCTCCTGAGAAC+CGG - chr5_3:1967849-1967868 None:intergenic 55.0%
GTTCTCAGGAGAAAGGGGCT+TGG + chr5_3:1967849-1967868 Msa0791120:intron 55.0%
ACTCGTGTCCTTGCTTTGCG+CGG + chr5_3:1968359-1968378 Msa0791120:CDS 55.0%
CATGAACACCGCGCAAAGCA+AGG - chr5_3:1968370-1968389 None:intergenic 55.0%
GTGCCTGTTTGTCATCACGG+TGG - chr5_3:1971081-1971100 None:intergenic 55.0%
ATCAGCGTCCCTTCCATGTG+GGG - chr5_3:1971502-1971521 None:intergenic 55.0%
TGACGTGTGTGTTTGGCGGG+GGG - chr5_3:1961606-1961625 None:intergenic 60.0%
! GAACCCCACTCTGAGGAGTG+AGG + chr5_3:1965803-1965822 Msa0791120:intron 60.0%
CCCTCCGGTTCTCAGGAGAA+AGG + chr5_3:1967842-1967861 Msa0791120:intron 60.0%
CCCTTTCTCCTGAGAACCGG+AGG - chr5_3:1967846-1967865 None:intergenic 60.0%
!! ACAGGAGCATCCAGCGGCAT+TGG + chr5_3:1968326-1968345 Msa0791120:intron 60.0%
ATGTCGCCTCAGAGGCTCAC+AGG + chr5_3:1969141-1969160 Msa0791120:CDS 60.0%
TGCGAACCTGTGAGCCTCTG+AGG - chr5_3:1969150-1969169 None:intergenic 60.0%
TGTGTGTTTGGCGGGGGGAG+GGG - chr5_3:1961601-1961620 None:intergenic 65.0%
GTGTGTGTTTGGCGGGGGGA+GGG - chr5_3:1961602-1961621 None:intergenic 65.0%
AGTCTCAGCGCCAATGCCGC+TGG - chr5_3:1968339-1968358 None:intergenic 65.0%
TGTGTTTGGCGGGGGGAGGG+GGG - chr5_3:1961599-1961618 None:intergenic 70.0%
GTGTGTTTGGCGGGGGGAGG+GGG - chr5_3:1961600-1961619 None:intergenic 70.0%
CGTGTGTGTTTGGCGGGGGG+AGG - chr5_3:1961603-1961622 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1959841 1971843 1959841 ID=Msa0791120;Name=Msa0791120
chr5_3 mRNA 1959841 1971843 1959841 ID=Msa0791120-mRNA-1;Parent=Msa0791120;Name=Msa0791120-mRNA-1;_AED=0.36;_eAED=0.36;_QI=95|0.85|0.86|1|0.92|0.93|15|271|596
chr5_3 exon 1959841 1960041 1959841 ID=Msa0791120-mRNA-1:exon:768;Parent=Msa0791120-mRNA-1
chr5_3 exon 1960391 1960600 1960391 ID=Msa0791120-mRNA-1:exon:769;Parent=Msa0791120-mRNA-1
chr5_3 exon 1961270 1961338 1961270 ID=Msa0791120-mRNA-1:exon:770;Parent=Msa0791120-mRNA-1
chr5_3 exon 1961747 1961900 1961747 ID=Msa0791120-mRNA-1:exon:771;Parent=Msa0791120-mRNA-1
chr5_3 exon 1963028 1963106 1963028 ID=Msa0791120-mRNA-1:exon:772;Parent=Msa0791120-mRNA-1
chr5_3 exon 1963718 1963802 1963718 ID=Msa0791120-mRNA-1:exon:773;Parent=Msa0791120-mRNA-1
chr5_3 exon 1964846 1964892 1964846 ID=Msa0791120-mRNA-1:exon:774;Parent=Msa0791120-mRNA-1
chr5_3 exon 1967036 1967234 1967036 ID=Msa0791120-mRNA-1:exon:775;Parent=Msa0791120-mRNA-1
chr5_3 exon 1968330 1968561 1968330 ID=Msa0791120-mRNA-1:exon:776;Parent=Msa0791120-mRNA-1
chr5_3 exon 1968765 1968844 1968765 ID=Msa0791120-mRNA-1:exon:777;Parent=Msa0791120-mRNA-1
chr5_3 exon 1969060 1969213 1969060 ID=Msa0791120-mRNA-1:exon:778;Parent=Msa0791120-mRNA-1
chr5_3 exon 1969323 1969401 1969323 ID=Msa0791120-mRNA-1:exon:779;Parent=Msa0791120-mRNA-1
chr5_3 exon 1970119 1970203 1970119 ID=Msa0791120-mRNA-1:exon:780;Parent=Msa0791120-mRNA-1
chr5_3 exon 1970648 1970694 1970648 ID=Msa0791120-mRNA-1:exon:781;Parent=Msa0791120-mRNA-1
chr5_3 exon 1971408 1971843 1971408 ID=Msa0791120-mRNA-1:exon:782;Parent=Msa0791120-mRNA-1
chr5_3 five_prime_UTR 1959841 1959935 1959841 ID=Msa0791120-mRNA-1:five_prime_utr;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1959936 1960041 1959936 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1960391 1960600 1960391 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1961270 1961338 1961270 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1961747 1961900 1961747 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1963028 1963106 1963028 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1963718 1963802 1963718 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1964846 1964892 1964846 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1967036 1967234 1967036 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1968330 1968561 1968330 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1968765 1968844 1968765 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1969060 1969213 1969060 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1969323 1969401 1969323 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1970119 1970203 1970119 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1970648 1970694 1970648 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 CDS 1971408 1971572 1971408 ID=Msa0791120-mRNA-1:cds;Parent=Msa0791120-mRNA-1
chr5_3 three_prime_UTR 1971573 1971843 1971573 ID=Msa0791120-mRNA-1:three_prime_utr;Parent=Msa0791120-mRNA-1
Gene Sequence

>Msa0791120

ATGTGGCCATTCAGCAGGAAAGGGGTATCTGGATTTTCATGGAAGTCAACAGCTGAAGAAGTTACTCATGGAATTGATGCAACTGGCCTCACTGCTATTGTCACTGGAGCATCCAGTGGTATTGGAGTTGAGACTACGCGTGTTCTTGCTTTACATGGTGTCCATGTGATTATGGCTGTTAGAAATAAGGTTAATGCTAATAATACCAGAGAAGCAATACTTAAAGAGATTCCATCAGCAAAAATAGATGTCATGGAGTTAGATCTCAGTTCATTGGAATCTGTCAAGAAATTTGCATCCGAATTTAATTCCTCTGGAGTCATGGCATGCCCTTTCATGCTTTCCAATGACAACATCGAACTACAGTTTGCGACAAACCACTTAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGAAGAAAACAGCTAGTGAAAGTAAGACTGAAGGAAGAATTGTTAATGTCTCCTCAGAAGCTCACAAATTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGAACAATCAAGTTACAGCAAATGGGGTGCATATGGACAGTCAAAGCTTGCTAATATTTTACATGCAAACCAACTTACAAAACATTTCAAGGATGATGGTATGAATATCATTGCAAATTCTCTTCATCCAGGAGGCATTGCCACCAATCTTTACCGTCATAACAGCGCAATCAACGGTATAGTAAATGTGGTTGGCAAACTTGTGATGAAAAACGTTCCACAGCGTCACGTCAGTTACAAACAAGCACTGCAATTGCAATATATCTCGGGTCCCTGCTTTTGTGACACACGGCAGAGAAAGAGACTGATACGCAATATGTGGCCATTCAGCAAGAAAGGTGTTTCTGGTTTTTCATGGAACTCAACTGCTGAACAAGTTACACATGGAATCGATGCTACTGGTCTCACTGCCATTGTTACTGGAGCATCCAGCGGCATTGGCGCTGAGACTACTCGTGTCCTTGCTTTGCGCGGTGTTCATGTGATTATGGGTGTGAGAAACATGGTTGCTGCTAAAGATGTCAAAGAAACAATACTCAAGGACATTCCCTCTGCTAAACTTGATGCCATGGAGTTAGATCTTAGCTCATTGGACTCTGTCAAGAAATTTGCATCTGAGTATAATTCTTCTGGTCGTCCGCTGAACATCTTGATAAATAATGCAGGAATTATGGCATGCCCTTTCAGTTTGTCCAAAGACAACATTGAACTTCAGTTTGCCACCAATCACATAGGTCATTTTCTCTTGACAAATCTTTTGTTGGATACTATGAAGAAAACGACACGCAAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCGCCTCAGAGGCTCACAGGTTCGCATATTCTGAAGGAATCCGTTTTGATAAAATCAATGACGAATCAAGTTACAGCAGATGGGGTGCATATGGACAGTCAAAACTTGCTAACATTTTACATGCCAACCAACTTACAAAACACCTCAAGGAAGATGGGGTGGATATTACTGCAAATTCTCTTCATCCAGGAACAATTGTCACCAATCTTTTCCGACATAACAGTGCAGTGAACGGTCTAATAAATGTGGTTGGGAGACTTGTGATGAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGTGAATATTTTTCAGACAGTAATGTGTACAAAACAACCCCACATGGAAGGGACGCTGATTTGGCAAAGAAACTCTGGGATTTCAGCATCAATTTGGTTAAGCAGAAATAG

Protein sequence

>Msa0791120

MWPFSRKGVSGFSWKSTAEEVTHGIDATGLTAIVTGASSGIGVETTRVLALHGVHVIMAVRNKVNANNTREAILKEIPSAKIDVMELDLSSLESVKKFASEFNSSGVMACPFMLSNDNIELQFATNHLGHFLLTNLLLDTMKKTASESKTEGRIVNVSSEAHKFAYSEGIRFDKINEQSSYSKWGAYGQSKLANILHANQLTKHFKDDGMNIIANSLHPGGIATNLYRHNSAINGIVNVVGKLVMKNVPQRHVSYKQALQLQYISGPCFCDTRQRKRLIRNMWPFSKKGVSGFSWNSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGVHVIMGVRNMVAAKDVKETILKDIPSAKLDAMELDLSSLDSVKKFASEYNSSGRPLNILINNAGIMACPFSLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRKSKKEGRIVNVASEAHRFAYSEGIRFDKINDESSYSRWGAYGQSKLANILHANQLTKHLKEDGVDITANSLHPGTIVTNLFRHNSAVNGLINVVGRLVMKNVQQGAATTCYVALHPQVKGVSGEYFSDSNVYKTTPHGRDADLAKKLWDFSINLVKQK*