Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868870 | XP_003618167.1 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 3.66e-152 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868870 | sp|Q6K5Q0|GL21_ORYSJ | 65.596 | 218 | 70 | 3 | 1 | 215 | 1 | 216 | 1.25e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868870 | G7KQ20 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 1.75e-152 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0868870 | 0.803893 | 2.804479e-49 | -8.615850e-47 |
| Msa0011010 | Msa0868870 | 0.808142 | 3.581705e-50 | -8.615850e-47 |
| Msa0011040 | Msa0868870 | 0.810059 | 1.391675e-50 | -8.615850e-47 |
| Msa0024650 | Msa0868870 | 0.809273 | 2.053217e-50 | -8.615850e-47 |
| Msa0036550 | Msa0868870 | 0.809068 | 2.270871e-50 | -8.615850e-47 |
| Msa0046390 | Msa0868870 | 0.801585 | 8.399232e-49 | -8.615850e-47 |
| Msa0048380 | Msa0868870 | 0.804546 | 2.050727e-49 | -8.615850e-47 |
| Msa0059880 | Msa0868870 | 0.842781 | 2.096378e-58 | -8.615850e-47 |
| Msa0064990 | Msa0868870 | 0.811757 | 5.968650e-51 | -8.615850e-47 |
| Msa0604280 | Msa0868870 | 0.800475 | 1.416083e-48 | -8.615850e-47 |
| Msa0614960 | Msa0868870 | 0.800020 | 1.752976e-48 | -8.615850e-47 |
| Msa0630130 | Msa0868870 | 0.849475 | 3.158474e-60 | -8.615850e-47 |
| Msa0634290 | Msa0868870 | 0.842172 | 3.041511e-58 | -8.615850e-47 |
| Msa0639410 | Msa0868870 | 0.808705 | 2.716258e-50 | -8.615850e-47 |
| Msa0641700 | Msa0868870 | 0.806662 | 7.376109e-50 | -8.615850e-47 |
| Msa0645120 | Msa0868870 | 0.826089 | 3.284653e-54 | -8.615850e-47 |
| Msa0651820 | Msa0868870 | 0.810586 | 1.070625e-50 | -8.615850e-47 |
| Msa0668210 | Msa0868870 | 0.831185 | 1.926456e-55 | -8.615850e-47 |
| Msa0668220 | Msa0868870 | 0.844808 | 6.009523e-59 | -8.615850e-47 |
| Msa0668230 | Msa0868870 | 0.820389 | 7.037451e-53 | -8.615850e-47 |
| Msa0670360 | Msa0868870 | 0.800009 | 1.761934e-48 | -8.615850e-47 |
| Msa0671490 | Msa0868870 | 0.834457 | 2.963633e-56 | -8.615850e-47 |
| Msa0685080 | Msa0868870 | 0.812109 | 5.001915e-51 | -8.615850e-47 |
| Msa0699170 | Msa0868870 | 0.804603 | 1.995366e-49 | -8.615850e-47 |
| Msa0705130 | Msa0868870 | -0.804193 | 2.429624e-49 | -8.615850e-47 |
| Msa0711240 | Msa0868870 | 0.827475 | 1.532509e-54 | -8.615850e-47 |
| Msa0716600 | Msa0868870 | 0.803158 | 3.983553e-49 | -8.615850e-47 |
| Msa0718770 | Msa0868870 | 0.815206 | 1.041270e-51 | -8.615850e-47 |
| Msa0728210 | Msa0868870 | 0.822429 | 2.380096e-53 | -8.615850e-47 |
| Msa0728520 | Msa0868870 | 0.820538 | 6.506561e-53 | -8.615850e-47 |
| Msa0735340 | Msa0868870 | 0.809304 | 2.021401e-50 | -8.615850e-47 |
| Msa0738570 | Msa0868870 | 0.810098 | 1.364431e-50 | -8.615850e-47 |
| Msa0738660 | Msa0868870 | 0.806634 | 7.480233e-50 | -8.615850e-47 |
| Msa0757120 | Msa0868870 | 0.807156 | 5.801124e-50 | -8.615850e-47 |
| Msa0776540 | Msa0868870 | 0.828024 | 1.131065e-54 | -8.615850e-47 |
| Msa0783580 | Msa0868870 | 0.801523 | 8.648203e-49 | -8.615850e-47 |
| Msa0787860 | Msa0868870 | 0.821236 | 4.495314e-53 | -8.615850e-47 |
| Msa0789410 | Msa0868870 | 0.816470 | 5.438249e-52 | -8.615850e-47 |
| Msa0792330 | Msa0868870 | 0.817484 | 3.220588e-52 | -8.615850e-47 |
| Msa0798150 | Msa0868870 | 0.800549 | 1.368073e-48 | -8.615850e-47 |
| Msa0798230 | Msa0868870 | 0.802267 | 6.084591e-49 | -8.615850e-47 |
| Msa0812050 | Msa0868870 | 0.829708 | 4.424708e-55 | -8.615850e-47 |
| Msa0813840 | Msa0868870 | 0.811724 | 6.068615e-51 | -8.615850e-47 |
| Msa0814160 | Msa0868870 | 0.805683 | 1.186017e-49 | -8.615850e-47 |
| Msa0816140 | Msa0868870 | 0.813137 | 2.979706e-51 | -8.615850e-47 |
| Msa0819110 | Msa0868870 | 0.812317 | 4.505394e-51 | -8.615850e-47 |
| Msa0824850 | Msa0868870 | 0.817328 | 3.490271e-52 | -8.615850e-47 |
| Msa0824860 | Msa0868870 | 0.816546 | 5.231245e-52 | -8.615850e-47 |
| Msa0838100 | Msa0868870 | -0.802228 | 6.197764e-49 | -8.615850e-47 |
| Msa0121320 | Msa0868870 | 0.816796 | 4.598312e-52 | -8.615850e-47 |
| Msa0130710 | Msa0868870 | 0.812117 | 4.982342e-51 | -8.615850e-47 |
| Msa0150910 | Msa0868870 | 0.842859 | 1.999532e-58 | -8.615850e-47 |
| Msa0160580 | Msa0868870 | 0.800015 | 1.756925e-48 | -8.615850e-47 |
| Msa0166180 | Msa0868870 | 0.820013 | 8.580867e-53 | -8.615850e-47 |
| Msa0173280 | Msa0868870 | -0.815947 | 7.121545e-52 | -8.615850e-47 |
| Msa0177550 | Msa0868870 | 0.820409 | 6.963528e-53 | -8.615850e-47 |
| Msa0185950 | Msa0868870 | -0.814261 | 1.685671e-51 | -8.615850e-47 |
| Msa0190670 | Msa0868870 | 0.814453 | 1.529184e-51 | -8.615850e-47 |
| Msa0195190 | Msa0868870 | 0.805398 | 1.360621e-49 | -8.615850e-47 |
| Msa0202060 | Msa0868870 | 0.800541 | 1.373500e-48 | -8.615850e-47 |
| Msa0202650 | Msa0868870 | 0.801495 | 8.766852e-49 | -8.615850e-47 |
| Msa0207640 | Msa0868870 | 0.812245 | 4.670935e-51 | -8.615850e-47 |
| Msa0207970 | Msa0868870 | 0.824604 | 7.377523e-54 | -8.615850e-47 |
| Msa0212550 | Msa0868870 | 0.812482 | 4.147620e-51 | -8.615850e-47 |
| Msa0218060 | Msa0868870 | 0.802525 | 5.382358e-49 | -8.615850e-47 |
| Msa0225910 | Msa0868870 | 0.803321 | 3.685695e-49 | -8.615850e-47 |
| Msa0225920 | Msa0868870 | 0.828223 | 1.012763e-54 | -8.615850e-47 |
| Msa0234120 | Msa0868870 | 0.829701 | 4.442024e-55 | -8.615850e-47 |
| Msa0234130 | Msa0868870 | 0.841692 | 4.073709e-58 | -8.615850e-47 |
| Msa0238110 | Msa0868870 | 0.807425 | 5.086237e-50 | -8.615850e-47 |
| Msa0393900 | Msa0868870 | 0.805442 | 1.332619e-49 | -8.615850e-47 |
| Msa0409490 | Msa0868870 | 0.802451 | 5.575960e-49 | -8.615850e-47 |
| Msa0414480 | Msa0868870 | 0.819279 | 1.262549e-52 | -8.615850e-47 |
| Msa0418150 | Msa0868870 | 0.829215 | 5.832583e-55 | -8.615850e-47 |
| Msa0418160 | Msa0868870 | 0.820608 | 6.270937e-53 | -8.615850e-47 |
| Msa0444210 | Msa0868870 | 0.800413 | 1.457903e-48 | -8.615850e-47 |
| Msa0444400 | Msa0868870 | 0.800224 | 1.593045e-48 | -8.615850e-47 |
| Msa0445530 | Msa0868870 | 0.803680 | 3.104835e-49 | -8.615850e-47 |
| Msa0464300 | Msa0868870 | 0.837918 | 3.913247e-57 | -8.615850e-47 |
| Msa0464310 | Msa0868870 | 0.827992 | 1.151466e-54 | -8.615850e-47 |
| Msa0245660 | Msa0868870 | 0.820932 | 5.280625e-53 | -8.615850e-47 |
| Msa0258010 | Msa0868870 | 0.801337 | 9.442335e-49 | -8.615850e-47 |
| Msa0266640 | Msa0868870 | 0.836354 | 9.831859e-57 | -8.615850e-47 |
| Msa0266650 | Msa0868870 | 0.843460 | 1.382066e-58 | -8.615850e-47 |
| Msa0274250 | Msa0868870 | 0.805587 | 1.241928e-49 | -8.615850e-47 |
| Msa0274260 | Msa0868870 | 0.834336 | 3.179117e-56 | -8.615850e-47 |
| Msa0278460 | Msa0868870 | 0.802551 | 5.318125e-49 | -8.615850e-47 |
| Msa0278950 | Msa0868870 | 0.805831 | 1.103736e-49 | -8.615850e-47 |
| Msa0287720 | Msa0868870 | 0.811448 | 6.966087e-51 | -8.615850e-47 |
| Msa0318370 | Msa0868870 | 0.814290 | 1.661472e-51 | -8.615850e-47 |
| Msa0335340 | Msa0868870 | 0.818394 | 2.005605e-52 | -8.615850e-47 |
| Msa0343720 | Msa0868870 | 0.801196 | 1.009074e-48 | -8.615850e-47 |
| Msa0346170 | Msa0868870 | 0.806058 | 9.892643e-50 | -8.615850e-47 |
| Msa0349910 | Msa0868870 | 0.828237 | 1.004925e-54 | -8.615850e-47 |
| Msa0356200 | Msa0868870 | 0.811008 | 8.677904e-51 | -8.615850e-47 |
| Msa0356250 | Msa0868870 | 0.802236 | 6.174627e-49 | -8.615850e-47 |
| Msa0356380 | Msa0868870 | 0.804601 | 1.997932e-49 | -8.615850e-47 |
| Msa0356410 | Msa0868870 | 0.809547 | 1.793084e-50 | -8.615850e-47 |
| Msa0490060 | Msa0868870 | 0.811393 | 7.159850e-51 | -8.615850e-47 |
| Msa0491770 | Msa0868870 | 0.804070 | 2.577013e-49 | -8.615850e-47 |
| Msa0491950 | Msa0868870 | 0.803655 | 3.143364e-49 | -8.615850e-47 |
| Msa0493710 | Msa0868870 | 0.807059 | 6.080086e-50 | -8.615850e-47 |
| Msa0531800 | Msa0868870 | 0.811549 | 6.623002e-51 | -8.615850e-47 |
| Msa0533510 | Msa0868870 | 0.834362 | 3.131434e-56 | -8.615850e-47 |
| Msa0533520 | Msa0868870 | 0.843837 | 1.095646e-58 | -8.615850e-47 |
| Msa0535570 | Msa0868870 | 0.804501 | 2.095442e-49 | -8.615850e-47 |
| Msa0538440 | Msa0868870 | 0.847498 | 1.113003e-59 | -8.615850e-47 |
| Msa0538450 | Msa0868870 | 0.869958 | 2.095543e-66 | -8.615850e-47 |
| Msa0538520 | Msa0868870 | 0.864804 | 9.339082e-65 | -8.615850e-47 |
| Msa0538530 | Msa0868870 | 0.848670 | 5.287443e-60 | -8.615850e-47 |
| Msa0538650 | Msa0868870 | 0.810194 | 1.301396e-50 | -8.615850e-47 |
| Msa0548760 | Msa0868870 | 0.814353 | 1.608633e-51 | -8.615850e-47 |
| Msa0554660 | Msa0868870 | 0.816938 | 4.271819e-52 | -8.615850e-47 |
| Msa0589720 | Msa0868870 | 0.841062 | 5.966028e-58 | -8.615850e-47 |
| Msa0589730 | Msa0868870 | 0.832142 | 1.118879e-55 | -8.615850e-47 |
| Msa0589740 | Msa0868870 | 0.845321 | 4.368915e-59 | -8.615850e-47 |
| Msa0589750 | Msa0868870 | 0.831967 | 1.236440e-55 | -8.615850e-47 |
| Msa0594320 | Msa0868870 | 0.835146 | 1.988996e-56 | -8.615850e-47 |
| Msa0594330 | Msa0868870 | 0.856681 | 2.729367e-62 | -8.615850e-47 |
| Msa0601400 | Msa0868870 | 0.807833 | 4.166415e-50 | -8.615850e-47 |
| Msa0854840 | Msa0868870 | 0.809633 | 1.717837e-50 | -8.615850e-47 |
| Msa0859230 | Msa0868870 | 0.806304 | 8.777046e-50 | -8.615850e-47 |
| Msa0863850 | Msa0868870 | 0.802858 | 4.594866e-49 | -8.615850e-47 |
| Msa0863860 | Msa0868870 | 0.805423 | 1.344421e-49 | -8.615850e-47 |
| Msa0864160 | Msa0868870 | 0.816396 | 5.650198e-52 | -8.615850e-47 |
| Msa0868820 | Msa0868870 | 0.836185 | 1.085297e-56 | -8.615850e-47 |
| Msa0868870 | Msa0883610 | 0.823980 | 1.033913e-53 | -8.615850e-47 |
| Msa0868870 | Msa0886370 | 0.807712 | 4.420658e-50 | -8.615850e-47 |
| Msa0868870 | Msa0896920 | 0.853778 | 1.908392e-61 | -8.615850e-47 |
| Msa0868870 | Msa0896950 | 0.806915 | 6.522095e-50 | -8.615850e-47 |
| Msa0868870 | Msa0902340 | 0.834766 | 2.479263e-56 | -8.615850e-47 |
| Msa0868870 | Msa0910830 | 0.800707 | 1.270172e-48 | -8.615850e-47 |
| Msa0868870 | Msa0932900 | 0.872123 | 4.048716e-67 | -8.615850e-47 |
| Msa0868870 | Msa0932910 | 0.867542 | 1.267749e-65 | -8.615850e-47 |
| Msa0868870 | Msa0932930 | 0.909416 | 5.834408e-82 | -8.615850e-47 |
| Msa0868870 | Msa0933580 | 0.831923 | 1.267338e-55 | -8.615850e-47 |
| Msa0868870 | Msa0933590 | 0.856094 | 4.056836e-62 | -8.615850e-47 |
| Msa0868870 | Msa0933610 | 0.857225 | 1.886704e-62 | -8.615850e-47 |
| Msa0868870 | Msa0951060 | 0.814090 | 1.839016e-51 | -8.615850e-47 |
| Msa0868870 | Msa0962290 | 0.809218 | 2.109551e-50 | -8.615850e-47 |
| Msa0868870 | Msa0970790 | 0.887597 | 1.240868e-72 | -8.615850e-47 |
| Msa0868870 | Msa0970820 | 0.859161 | 5.009003e-63 | -8.615850e-47 |
| Msa0868870 | Msa0985250 | 0.821501 | 3.904530e-53 | -8.615850e-47 |
| Msa0868870 | Msa0985290 | 0.803081 | 4.133207e-49 | -8.615850e-47 |
| Msa0868870 | Msa0987550 | 0.814514 | 1.481845e-51 | -8.615850e-47 |
| Msa0868870 | Msa0996980 | 0.815223 | 1.031792e-51 | -8.615850e-47 |
| Msa0868870 | Msa1006030 | 0.800501 | 1.399214e-48 | -8.615850e-47 |
| Msa0868870 | Msa1006170 | 0.855152 | 7.643225e-62 | -8.615850e-47 |
| Msa0868870 | Msa1024350 | 0.837385 | 5.363648e-57 | -8.615850e-47 |
| Msa0868870 | Msa1024420 | 0.809800 | 1.581930e-50 | -8.615850e-47 |
| Msa0868870 | Msa1026050 | 0.812514 | 4.080242e-51 | -8.615850e-47 |
| Msa0868870 | Msa1026170 | 0.803702 | 3.073663e-49 | -8.615850e-47 |
| Msa0868870 | Msa1029860 | 0.800676 | 1.288817e-48 | -8.615850e-47 |
| Msa0868870 | Msa1030430 | -0.801421 | 9.075271e-49 | -8.615850e-47 |
| Msa0868870 | Msa1037530 | 0.815540 | 8.771832e-52 | -8.615850e-47 |
| Msa0868870 | Msa1040330 | 0.800127 | 1.667057e-48 | -8.615850e-47 |
| Msa0868870 | Msa1046220 | 0.803200 | 3.904384e-49 | -8.615850e-47 |
| Msa0868870 | Msa1048350 | 0.803072 | 4.150857e-49 | -8.615850e-47 |
| Msa0868870 | Msa1048390 | 0.803292 | 3.737442e-49 | -8.615850e-47 |
| Msa0868870 | Msa1061670 | 0.808547 | 2.936144e-50 | -8.615850e-47 |
| Msa0868870 | Msa1063210 | 0.809454 | 1.877644e-50 | -8.615850e-47 |
| Msa0868870 | Msa1063260 | 0.805866 | 1.085454e-49 | -8.615850e-47 |
| Msa0868870 | Msa1064940 | 0.851589 | 8.042188e-61 | -8.615850e-47 |
| Msa0868870 | Msa1083100 | 0.829559 | 4.811400e-55 | -8.615850e-47 |
| Msa0868870 | Msa1087380 | 0.838846 | 2.255843e-57 | -8.615850e-47 |
| Msa0868870 | Msa1106960 | 0.803162 | 3.976585e-49 | -8.615850e-47 |
| Msa0868870 | Msa1107320 | 0.803776 | 2.965600e-49 | -8.615850e-47 |
| Msa0868870 | Msa1109880 | 0.829749 | 4.324996e-55 | -8.615850e-47 |
| Msa0868870 | Msa1109890 | 0.812094 | 5.040081e-51 | -8.615850e-47 |
| Msa0868870 | Msa1110040 | 0.827888 | 1.219559e-54 | -8.615850e-47 |
| Msa0868870 | Msa1130410 | 0.803125 | 4.046207e-49 | -8.615850e-47 |
| Msa0868870 | Msa1138110 | 0.821879 | 3.193510e-53 | -8.615850e-47 |
| Msa0868870 | Msa1153690 | 0.832100 | 1.146298e-55 | -8.615850e-47 |
| Msa0868870 | Msa1170340 | 0.814864 | 1.239629e-51 | -8.615850e-47 |
| Msa0868870 | Msa1173290 | 0.837055 | 6.513024e-57 | -8.615850e-47 |
| Msa0868870 | Msa1204110 | -0.801485 | 8.804791e-49 | -8.615850e-47 |
| Msa0868870 | Msa1208830 | 0.822624 | 2.144248e-53 | -8.615850e-47 |
| Msa0868870 | Msa1208910 | 0.838529 | 2.725019e-57 | -8.615850e-47 |
| Msa0868870 | Msa1214960 | 0.809070 | 2.269148e-50 | -8.615850e-47 |
| Msa0868870 | Msa1223990 | 0.818894 | 1.544886e-52 | -8.615850e-47 |
| Msa0868870 | Msa1263120 | 0.819743 | 9.895397e-53 | -8.615850e-47 |
| Msa0868870 | Msa1263370 | 0.811416 | 7.079849e-51 | -8.615850e-47 |
| Msa0868870 | Msa1265500 | 0.807895 | 4.042044e-50 | -8.615850e-47 |
| Msa0868870 | Msa1323030 | 0.800164 | 1.638553e-48 | -8.615850e-47 |
| Msa0868870 | Msa1323150 | 0.831895 | 1.288151e-55 | -8.615850e-47 |
| Msa0868870 | Msa1341030 | 0.815657 | 8.261375e-52 | -8.615850e-47 |
| Msa0868870 | Msa1355330 | 0.832553 | 8.850567e-56 | -8.615850e-47 |
| Msa0868870 | Msa1373560 | 0.823829 | 1.122093e-53 | -8.615850e-47 |
| Msa0868870 | Msa1395720 | 0.805587 | 1.242065e-49 | -8.615850e-47 |
| Msa0868870 | Msa1419210 | 0.822397 | 2.420870e-53 | -8.615850e-47 |
| Msa0868870 | Msa1419390 | 0.816936 | 4.277152e-52 | -8.615850e-47 |
| Msa0868870 | Msa1421130 | 0.810139 | 1.336897e-50 | -8.615850e-47 |
| Msa0868870 | Msa1441300 | 0.826657 | 2.405326e-54 | -8.615850e-47 |
| Msa0868870 | Msa1446090 | 0.825241 | 5.219495e-54 | -8.615850e-47 |
| Msa0868870 | Msa1448150 | 0.815074 | 1.113676e-51 | -8.615850e-47 |
| Msa0868870 | Msa1453650 | 0.800271 | 1.558694e-48 | -8.615850e-47 |
| Msa0868870 | Msa1456600 | 0.827295 | 1.693061e-54 | -8.615850e-47 |
| Msa0868870 | Msa1459610 | 0.816436 | 5.535410e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868870 | MtrunA17_Chr6g0449731 | 97.260 | 219 | 6 | 0 | 1 | 219 | 1 | 219 | 1.18e-155 | 430 |
| Msa0868870 | MtrunA17_Chr6g0449771 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 1.95e-155 | 429 |
| Msa0868870 | MtrunA17_Chr6g0449751 | 95.455 | 220 | 10 | 0 | 1 | 220 | 1 | 220 | 1.01e-153 | 425 |
| Msa0868870 | MtrunA17_Chr6g0449761 | 96.759 | 216 | 7 | 0 | 1 | 216 | 1 | 216 | 1.60e-153 | 425 |
| Msa0868870 | MtrunA17_Chr1g0189841 | 81.279 | 219 | 38 | 3 | 5 | 220 | 4 | 222 | 8.41e-126 | 354 |
| Msa0868870 | MtrunA17_Chr4g0007041 | 76.923 | 221 | 50 | 1 | 1 | 220 | 1 | 221 | 1.38e-121 | 343 |
| Msa0868870 | MtrunA17_Chr2g0285871 | 76.923 | 221 | 50 | 1 | 1 | 220 | 1 | 221 | 4.72e-121 | 342 |
| Msa0868870 | MtrunA17_Chr4g0007031 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 2.26e-120 | 340 |
| Msa0868870 | MtrunA17_Chr5g0419971 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 2.26e-120 | 340 |
| Msa0868870 | MtrunA17_Chr5g0419981 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 2.26e-120 | 340 |
| Msa0868870 | MtrunA17_Chr4g0007051 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 2.34e-120 | 340 |
| Msa0868870 | MtrunA17_Chr6g0449781 | 75.455 | 220 | 53 | 1 | 1 | 220 | 1 | 219 | 5.98e-114 | 324 |
| Msa0868870 | MtrunA17_Chr6g0449791 | 72.115 | 208 | 57 | 1 | 1 | 207 | 1 | 208 | 2.73e-104 | 300 |
| Msa0868870 | MtrunA17_Chr1g0156131 | 62.814 | 199 | 64 | 2 | 19 | 215 | 19 | 209 | 2.48e-84 | 249 |
| Msa0868870 | MtrunA17_Chr2g0292831 | 62.312 | 199 | 68 | 2 | 19 | 215 | 19 | 212 | 1.76e-83 | 247 |
| Msa0868870 | MtrunA17_Chr2g0292901 | 62.000 | 200 | 68 | 3 | 19 | 215 | 19 | 213 | 8.53e-81 | 240 |
| Msa0868870 | MtrunA17_Chr2g0292861 | 65.116 | 172 | 57 | 2 | 47 | 215 | 7 | 178 | 6.04e-76 | 226 |
| Msa0868870 | MtrunA17_Chr2g0292841 | 65.116 | 172 | 57 | 2 | 47 | 215 | 7 | 178 | 1.87e-74 | 223 |
| Msa0868870 | MtrunA17_Chr1g0193671 | 47.143 | 210 | 101 | 4 | 11 | 214 | 8 | 213 | 1.74e-59 | 186 |
| Msa0868870 | MtrunA17_Chr7g0271211 | 51.531 | 196 | 89 | 3 | 22 | 215 | 20 | 211 | 5.98e-57 | 179 |
| Msa0868870 | MtrunA17_Chr1g0193421 | 48.500 | 200 | 97 | 3 | 18 | 215 | 20 | 215 | 6.25e-56 | 177 |
| Msa0868870 | MtrunA17_Chr2g0292911 | 68.644 | 118 | 35 | 1 | 47 | 162 | 7 | 124 | 1.51e-53 | 168 |
| Msa0868870 | MtrunA17_Chr5g0414971 | 47.716 | 197 | 96 | 4 | 22 | 215 | 27 | 219 | 4.20e-53 | 170 |
| Msa0868870 | MtrunA17_Chr1g0210761 | 42.791 | 215 | 107 | 6 | 3 | 215 | 7 | 207 | 9.93e-48 | 156 |
| Msa0868870 | MtrunA17_Chr1g0178711 | 38.462 | 221 | 125 | 5 | 2 | 215 | 5 | 221 | 4.25e-44 | 147 |
| Msa0868870 | MtrunA17_Chr2g0300561 | 45.455 | 187 | 94 | 4 | 28 | 212 | 23 | 203 | 1.17e-42 | 143 |
| Msa0868870 | MtrunA17_Chr8g0344021 | 47.337 | 169 | 75 | 4 | 27 | 189 | 24 | 184 | 8.44e-42 | 140 |
| Msa0868870 | MtrunA17_Chr2g0300591 | 38.785 | 214 | 116 | 5 | 1 | 212 | 3 | 203 | 1.45e-38 | 132 |
| Msa0868870 | MtrunA17_Chr2g0300581 | 38.605 | 215 | 117 | 5 | 1 | 213 | 3 | 204 | 1.55e-38 | 132 |
| Msa0868870 | MtrunA17_Chr8g0335851 | 41.899 | 179 | 100 | 3 | 22 | 199 | 26 | 201 | 3.06e-35 | 124 |
| Msa0868870 | MtrunA17_Chr8g0343911 | 39.474 | 190 | 107 | 4 | 26 | 213 | 19 | 202 | 4.34e-35 | 123 |
| Msa0868870 | MtrunA17_Chr8g0343934 | 37.688 | 199 | 116 | 4 | 18 | 215 | 14 | 205 | 5.31e-34 | 120 |
| Msa0868870 | MtrunA17_Chr3g0084531 | 38.693 | 199 | 114 | 4 | 18 | 215 | 14 | 205 | 6.51e-34 | 120 |
| Msa0868870 | MtrunA17_Chr8g0343954 | 39.683 | 189 | 106 | 4 | 28 | 215 | 24 | 205 | 1.90e-33 | 119 |
| Msa0868870 | MtrunA17_Chr2g0313961 | 38.191 | 199 | 115 | 4 | 18 | 215 | 14 | 205 | 1.08e-32 | 117 |
| Msa0868870 | MtrunA17_Chr3g0084521 | 37.441 | 211 | 118 | 5 | 6 | 215 | 7 | 204 | 1.90e-32 | 117 |
| Msa0868870 | MtrunA17_Chr2g0297231 | 37.688 | 199 | 116 | 4 | 18 | 215 | 14 | 205 | 3.61e-32 | 115 |
| Msa0868870 | MtrunA17_Chr3g0084511 | 36.967 | 211 | 119 | 5 | 6 | 215 | 7 | 204 | 4.42e-32 | 115 |
| Msa0868870 | MtrunA17_Chr2g0302171 | 37.441 | 211 | 119 | 5 | 6 | 215 | 7 | 205 | 8.17e-32 | 115 |
| Msa0868870 | MtrunA17_Chr2g0297241 | 37.688 | 199 | 116 | 4 | 18 | 215 | 14 | 205 | 9.49e-32 | 115 |
| Msa0868870 | MtrunA17_Chr3g0130241 | 33.649 | 211 | 135 | 4 | 3 | 211 | 69 | 276 | 1.01e-30 | 114 |
| Msa0868870 | MtrunA17_Chr8g0343961 | 37.173 | 191 | 112 | 4 | 26 | 215 | 22 | 205 | 1.74e-30 | 111 |
| Msa0868870 | MtrunA17_Chr8g0343921 | 39.474 | 190 | 105 | 6 | 28 | 215 | 22 | 203 | 2.70e-30 | 111 |
| Msa0868870 | MtrunA17_Chr4g0003361 | 39.080 | 174 | 99 | 4 | 43 | 215 | 34 | 201 | 3.11e-30 | 110 |
| Msa0868870 | MtrunA17_Chr2g0301611 | 36.683 | 199 | 118 | 4 | 18 | 215 | 14 | 205 | 3.79e-30 | 110 |
| Msa0868870 | MtrunA17_Chr8g0344051 | 37.500 | 216 | 114 | 6 | 6 | 215 | 8 | 208 | 5.68e-30 | 110 |
| Msa0868870 | MtrunA17_Chr8g0344041 | 35.567 | 194 | 116 | 4 | 24 | 215 | 23 | 209 | 4.70e-29 | 108 |
| Msa0868870 | MtrunA17_Chr2g0286171 | 34.101 | 217 | 132 | 6 | 1 | 215 | 1 | 208 | 3.08e-28 | 105 |
| Msa0868870 | MtrunA17_Chr8g0344031 | 34.123 | 211 | 131 | 4 | 6 | 215 | 4 | 207 | 8.18e-28 | 104 |
| Msa0868870 | MtrunA17_Chr5g0411961 | 34.171 | 199 | 123 | 4 | 18 | 215 | 14 | 205 | 1.93e-27 | 103 |
| Msa0868870 | MtrunA17_Chr2g0302541 | 36.126 | 191 | 114 | 4 | 26 | 215 | 22 | 205 | 4.65e-27 | 102 |
| Msa0868870 | MtrunA17_Chr4g0012651 | 36.126 | 191 | 114 | 4 | 26 | 215 | 22 | 205 | 5.17e-27 | 102 |
| Msa0868870 | MtrunA17_Chr7g0217811 | 35.602 | 191 | 115 | 4 | 26 | 215 | 22 | 205 | 7.66e-27 | 102 |
| Msa0868870 | MtrunA17_Chr4g0026191 | 39.161 | 143 | 82 | 3 | 74 | 215 | 67 | 205 | 3.20e-26 | 100 |
| Msa0868870 | MtrunA17_Chr4g0026201 | 39.161 | 143 | 82 | 3 | 74 | 215 | 67 | 205 | 3.79e-26 | 100 |
| Msa0868870 | MtrunA17_Chr2g0321581 | 34.562 | 217 | 111 | 8 | 6 | 215 | 12 | 204 | 4.67e-26 | 100 |
| Msa0868870 | MtrunA17_Chr2g0321591 | 34.562 | 217 | 111 | 8 | 6 | 215 | 12 | 204 | 6.22e-26 | 99.8 |
| Msa0868870 | MtrunA17_Chr3g0115141 | 35.450 | 189 | 112 | 5 | 28 | 215 | 27 | 206 | 3.64e-25 | 97.8 |
| Msa0868870 | MtrunA17_Chr2g0321601 | 34.123 | 211 | 120 | 7 | 6 | 215 | 11 | 203 | 5.62e-25 | 97.4 |
| Msa0868870 | MtrunA17_Chr2g0292881 | 71.930 | 57 | 16 | 0 | 93 | 149 | 1 | 57 | 6.20e-23 | 87.8 |
| Msa0868870 | MtrunA17_Chr3g0084551 | 32.487 | 197 | 117 | 7 | 18 | 212 | 14 | 196 | 7.15e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868870 | AT5G39120.1 | 64.840 | 219 | 73 | 3 | 1 | 215 | 1 | 219 | 3.20e-93 | 272 |
| Msa0868870 | AT5G39150.1 | 64.384 | 219 | 74 | 3 | 1 | 215 | 1 | 219 | 1.88e-92 | 270 |
| Msa0868870 | AT5G39180.1 | 64.384 | 219 | 74 | 3 | 1 | 215 | 1 | 219 | 3.15e-92 | 270 |
| Msa0868870 | AT5G39110.1 | 64.651 | 215 | 73 | 2 | 4 | 215 | 6 | 220 | 1.52e-91 | 268 |
| Msa0868870 | AT5G38940.1 | 67.347 | 196 | 62 | 1 | 22 | 215 | 26 | 221 | 1.62e-90 | 265 |
| Msa0868870 | AT5G38940.2 | 67.347 | 196 | 62 | 1 | 22 | 215 | 50 | 245 | 2.71e-90 | 266 |
| Msa0868870 | AT5G38930.1 | 67.677 | 198 | 62 | 1 | 20 | 215 | 24 | 221 | 9.82e-90 | 263 |
| Msa0868870 | AT3G05950.1 | 66.986 | 209 | 64 | 4 | 11 | 215 | 14 | 221 | 1.65e-88 | 261 |
| Msa0868870 | AT5G39130.1 | 66.332 | 199 | 63 | 3 | 20 | 215 | 22 | 219 | 1.80e-88 | 260 |
| Msa0868870 | AT5G39160.1 | 66.834 | 199 | 62 | 3 | 20 | 215 | 22 | 219 | 1.86e-88 | 260 |
| Msa0868870 | AT5G39190.1 | 63.636 | 220 | 74 | 5 | 1 | 215 | 1 | 219 | 2.69e-88 | 260 |
| Msa0868870 | AT5G38910.1 | 63.470 | 219 | 76 | 4 | 1 | 215 | 1 | 219 | 8.78e-88 | 258 |
| Msa0868870 | AT5G38960.1 | 64.677 | 201 | 68 | 2 | 18 | 215 | 22 | 222 | 2.95e-87 | 257 |
| Msa0868870 | AT4G14630.1 | 61.574 | 216 | 79 | 3 | 4 | 215 | 7 | 222 | 1.20e-85 | 253 |
| Msa0868870 | AT5G39160.3 | 64.322 | 199 | 63 | 3 | 20 | 215 | 22 | 215 | 1.07e-83 | 248 |
| Msa0868870 | AT3G04200.1 | 63.426 | 216 | 72 | 4 | 6 | 215 | 8 | 222 | 3.91e-82 | 244 |
| Msa0868870 | AT3G04150.1 | 57.658 | 222 | 86 | 5 | 1 | 215 | 1 | 221 | 2.26e-75 | 227 |
| Msa0868870 | AT3G04190.1 | 59.804 | 204 | 78 | 3 | 15 | 215 | 19 | 221 | 3.86e-75 | 226 |
| Msa0868870 | AT5G39190.2 | 57.339 | 218 | 69 | 4 | 1 | 215 | 1 | 197 | 2.13e-74 | 224 |
| Msa0868870 | AT5G39160.2 | 56.881 | 218 | 70 | 4 | 1 | 215 | 1 | 197 | 5.38e-74 | 223 |
| Msa0868870 | AT3G04150.2 | 54.274 | 234 | 88 | 5 | 1 | 215 | 1 | 234 | 3.98e-73 | 222 |
| Msa0868870 | AT3G04170.1 | 56.279 | 215 | 86 | 5 | 5 | 215 | 8 | 218 | 1.79e-71 | 217 |
| Msa0868870 | AT3G04180.1 | 56.863 | 204 | 84 | 3 | 15 | 215 | 19 | 221 | 2.41e-71 | 217 |
| Msa0868870 | AT5G38910.2 | 51.598 | 219 | 65 | 5 | 1 | 215 | 1 | 182 | 2.93e-61 | 190 |
| Msa0868870 | AT1G09560.1 | 50.254 | 197 | 92 | 3 | 22 | 216 | 24 | 216 | 1.43e-57 | 182 |
| Msa0868870 | AT1G02335.1 | 47.980 | 198 | 97 | 3 | 20 | 215 | 22 | 215 | 1.55e-57 | 181 |
| Msa0868870 | AT3G62020.1 | 47.642 | 212 | 104 | 4 | 7 | 215 | 8 | 215 | 2.34e-56 | 179 |
| Msa0868870 | AT3G05930.1 | 46.364 | 220 | 108 | 5 | 1 | 215 | 1 | 215 | 6.03e-56 | 177 |
| Msa0868870 | AT1G18970.1 | 46.009 | 213 | 107 | 4 | 7 | 217 | 14 | 220 | 1.21e-55 | 177 |
| Msa0868870 | AT1G18980.1 | 46.296 | 216 | 106 | 5 | 4 | 217 | 13 | 220 | 4.49e-54 | 173 |
| Msa0868870 | AT5G26700.1 | 46.890 | 209 | 92 | 6 | 11 | 215 | 16 | 209 | 2.25e-53 | 171 |
| Msa0868870 | AT3G62020.2 | 48.889 | 180 | 87 | 3 | 39 | 215 | 9 | 186 | 3.43e-49 | 159 |
| Msa0868870 | AT1G10460.1 | 42.211 | 199 | 108 | 5 | 22 | 215 | 19 | 215 | 6.01e-48 | 157 |
| Msa0868870 | AT3G10080.1 | 40.796 | 201 | 111 | 4 | 19 | 215 | 23 | 219 | 5.15e-44 | 147 |
| Msa0868870 | AT3G10080.2 | 40.594 | 202 | 112 | 4 | 18 | 215 | 93 | 290 | 2.34e-43 | 147 |
| Msa0868870 | AT5G20630.1 | 43.976 | 166 | 87 | 3 | 26 | 189 | 22 | 183 | 4.61e-39 | 134 |
| Msa0868870 | AT5G61750.1 | 41.848 | 184 | 97 | 4 | 6 | 187 | 8 | 183 | 1.33e-37 | 130 |
| Msa0868870 | AT1G74820.1 | 37.615 | 218 | 120 | 5 | 8 | 215 | 14 | 225 | 3.98e-36 | 127 |
| Msa0868870 | AT1G72610.1 | 38.095 | 189 | 109 | 4 | 26 | 212 | 19 | 201 | 1.69e-32 | 117 |
| Msa0868870 | AT5G38950.1 | 64.062 | 64 | 23 | 0 | 144 | 207 | 2 | 65 | 2.68e-20 | 82.8 |
Find 49 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGCTAATGCTGTATT+TGG | 0.057045 | 6_1:+2666891 | Msa0868870:CDS |
| CTTGTTTGTGACAGCCTTCT+TGG | 0.126065 | 6_1:+2666188 | Msa0868870:CDS |
| TAGTGATTACACCTGGATTT+TGG | 0.253401 | 6_1:-2666872 | None:intergenic |
| TTCACTTTCAATTGAATGTT+GGG | 0.325573 | 6_1:+2666814 | Msa0868870:CDS |
| AGTATACATACCACCATTCT+TGG | 0.333982 | 6_1:-2666280 | None:intergenic |
| ATACTAGGACTAAACACTTT+AGG | 0.375557 | 6_1:+2666600 | Msa0868870:CDS |
| TCATTTGCAGTAGCAAGCTT+TGG | 0.385081 | 6_1:-2666501 | None:intergenic |
| TTGGAGGGCACTCTTTATGT+TGG | 0.393903 | 6_1:+2666708 | Msa0868870:CDS |
| GGAAATGCAGTTGTCATTGC+TGG | 0.408325 | 6_1:+2666840 | Msa0868870:CDS |
| TGGAGGGCACTCTTTATGTT+GGG | 0.413131 | 6_1:+2666709 | Msa0868870:CDS |
| AGTATCTCATTAACTGTAAC+CGG | 0.413639 | 6_1:-2666582 | None:intergenic |
| CCACTATGTTATTGTCCACT+TGG | 0.415021 | 6_1:-2666956 | None:intergenic |
| TGAAAGTGAATGAGGCCAAT+TGG | 0.419001 | 6_1:-2666801 | None:intergenic |
| ATTCACTTTCAATTGAATGT+TGG | 0.434824 | 6_1:+2666813 | Msa0868870:CDS |
| TTTCAATTGAATGTTGGGTA+TGG | 0.435827 | 6_1:+2666819 | Msa0868870:CDS |
| ACAAAAGTCTTGTAAAGGGC+TGG | 0.441843 | 6_1:-2666241 | None:intergenic |
| GATGTCTTCGTGTTTCCAAT+TGG | 0.447280 | 6_1:+2666786 | Msa0868870:CDS |
| CTATTGCTAATGCTGTATTT+GGG | 0.459960 | 6_1:+2666892 | Msa0868870:CDS |
| ATTGTCCACTTGGAAAGCTT+TGG | 0.467417 | 6_1:-2666946 | None:intergenic |
| ATAAGAATCTCAGTGGCTCT+AGG | 0.470121 | 6_1:-2666681 | None:intergenic |
| TTCTTCTACTCAGTGAAAGA+AGG | 0.477471 | 6_1:+2666525 | Msa0868870:CDS |
| TGAGATTCTTATCGTGTTGG+AGG | 0.479548 | 6_1:+2666692 | Msa0868870:CDS |
| TCGCATTGACTTCGCTGCTA+GGG | 0.481033 | 6_1:+2666635 | Msa0868870:CDS |
| GCCACACAAAAGTCTTGTAA+AGG | 0.484515 | 6_1:-2666246 | None:intergenic |
| CTCGCATTGACTTCGCTGCT+AGG | 0.500918 | 6_1:+2666634 | Msa0868870:CDS |
| CCACACAAAAGTCTTGTAAA+GGG | 0.505298 | 6_1:-2666245 | None:intergenic |
| CAAAAGTCTTGTAAAGGGCT+GGG | 0.515376 | 6_1:-2666240 | None:intergenic |
| TTGTAAAGGGCTGGGATCAA+AGG | 0.516879 | 6_1:-2666232 | None:intergenic |
| CACTGAGATTCTTATCGTGT+TGG | 0.542092 | 6_1:+2666689 | Msa0868870:CDS |
| GTGGCTCTAGGGTGAGTATG+TGG | 0.548107 | 6_1:-2666669 | None:intergenic |
| TAAGAATCTCAGTGGCTCTA+GGG | 0.548530 | 6_1:-2666680 | None:intergenic |
| CGCATTGACTTCGCTGCTAG+GGG | 0.548623 | 6_1:+2666636 | Msa0868870:CDS |
| GGACTTAGCAGCCAAAATCC+AGG | 0.549743 | 6_1:+2666861 | Msa0868870:CDS |
| CATTCAATTGAAAGTGAATG+AGG | 0.551568 | 6_1:-2666809 | None:intergenic |
| GTTACAGTTAATGAGATACT+AGG | 0.558743 | 6_1:+2666585 | Msa0868870:CDS |
| ACAAGATGCTAAAGCCAAGA+AGG | 0.574992 | 6_1:-2666202 | None:intergenic |
| TGTGAATGGCAAATTCTGCA+AGG | 0.584711 | 6_1:+2666476 | Msa0868870:CDS |
| GAGATTCTTATCGTGTTGGA+GGG | 0.598384 | 6_1:+2666693 | Msa0868870:CDS |
| CCAAGTGGACAATAACATAG+TGG | 0.613774 | 6_1:+2666956 | Msa0868870:CDS |
| TTAGCAATAGTGATTACACC+TGG | 0.624375 | 6_1:-2666879 | None:intergenic |
| ATCAATGATACCAAGAATGG+TGG | 0.631783 | 6_1:+2666270 | Msa0868870:CDS |
| GCTATCAATGATACCAAGAA+TGG | 0.640005 | 6_1:+2666267 | Msa0868870:CDS |
| ATCACAAAAGTACTCAACAA+AGG | 0.644517 | 6_1:+2666762 | Msa0868870:CDS |
| AGGGCTGGGATCAAAGGCAA+AGG | 0.658426 | 6_1:-2666226 | None:intergenic |
| GGAAACACGTCAAATCCACT+TGG | 0.662851 | 6_1:+2666546 | Msa0868870:CDS |
| TCTCACCAAAGCTTTCCAAG+TGG | 0.665947 | 6_1:+2666941 | Msa0868870:CDS |
| ACTTGGTTCAAAAGTGACAC+CGG | 0.669513 | 6_1:+2666563 | Msa0868870:CDS |
| GCTCTAGGGTGAGTATGTGG+AGG | 0.673911 | 6_1:-2666666 | None:intergenic |
| CAACACGATAAGAATCTCAG+TGG | 0.757588 | 6_1:-2666688 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATATACGTATATAAG+TGG | + | chr6_1:2666410-2666429 | Msa0868870:intron | 15.0% |
| !! | TTAATATATACGTATATAAG+TGG | + | chr6_1:2666410-2666429 | Msa0868870:intron | 15.0% |
| !! | TACGTATATATTAATGTTGT+CGG | - | chr6_1:2666404-2666423 | None:intergenic | 20.0% |
| !! | TACGTATATATTAATGTTGT+CGG | - | chr6_1:2666404-2666423 | None:intergenic | 20.0% |
| ! | TCATAGTTCAATCAGTTTAA+CGG | - | chr6_1:2666351-2666370 | None:intergenic | 25.0% |
| ! | ACTATGATACAAAAGTTTCA+CGG | + | chr6_1:2666364-2666383 | Msa0868870:intron | 25.0% |
| ! | ATTCACTTTCAATTGAATGT+TGG | + | chr6_1:2666813-2666832 | Msa0868870:CDS | 25.0% |
| ! | TTCACTTTCAATTGAATGTT+GGG | + | chr6_1:2666814-2666833 | Msa0868870:CDS | 25.0% |
| !!! | AGAACTTCTGAAGAAATTTT+TGG | - | chr6_1:2666924-2666943 | None:intergenic | 25.0% |
| ! | ACAATCTTCAAAAACAATTC+TGG | + | chr6_1:2666979-2666998 | Msa0868870:CDS | 25.0% |
| ! | CAATCTTCAAAAACAATTCT+GGG | + | chr6_1:2666980-2666999 | Msa0868870:CDS | 25.0% |
| ! | TCATAGTTCAATCAGTTTAA+CGG | - | chr6_1:2666351-2666370 | None:intergenic | 25.0% |
| ! | ACTATGATACAAAAGTTTCA+CGG | + | chr6_1:2666364-2666383 | Msa0868870:intron | 25.0% |
| ! | ATTCACTTTCAATTGAATGT+TGG | + | chr6_1:2666813-2666832 | Msa0868870:CDS | 25.0% |
| ! | TTCACTTTCAATTGAATGTT+GGG | + | chr6_1:2666814-2666833 | Msa0868870:CDS | 25.0% |
| !!! | AGAACTTCTGAAGAAATTTT+TGG | - | chr6_1:2666924-2666943 | None:intergenic | 25.0% |
| ! | ACAATCTTCAAAAACAATTC+TGG | + | chr6_1:2666979-2666998 | Msa0868870:CDS | 25.0% |
| ! | CAATCTTCAAAAACAATTCT+GGG | + | chr6_1:2666980-2666999 | Msa0868870:CDS | 25.0% |
| CATAGTTCAATCAGTTTAAC+GGG | - | chr6_1:2666350-2666369 | None:intergenic | 30.0% | |
| AGTATCTCATTAACTGTAAC+CGG | - | chr6_1:2666585-2666604 | None:intergenic | 30.0% | |
| GTTACAGTTAATGAGATACT+AGG | + | chr6_1:2666585-2666604 | Msa0868870:CDS | 30.0% | |
| ATACTAGGACTAAACACTTT+AGG | + | chr6_1:2666600-2666619 | Msa0868870:CDS | 30.0% | |
| !! | ATCACAAAAGTACTCAACAA+AGG | + | chr6_1:2666762-2666781 | Msa0868870:CDS | 30.0% |
| CATTCAATTGAAAGTGAATG+AGG | - | chr6_1:2666812-2666831 | None:intergenic | 30.0% | |
| TTTCAATTGAATGTTGGGTA+TGG | + | chr6_1:2666819-2666838 | Msa0868870:CDS | 30.0% | |
| ACTATTGCTAATGCTGTATT+TGG | + | chr6_1:2666891-2666910 | Msa0868870:CDS | 30.0% | |
| CTATTGCTAATGCTGTATTT+GGG | + | chr6_1:2666892-2666911 | Msa0868870:CDS | 30.0% | |
| CATAGTTCAATCAGTTTAAC+GGG | - | chr6_1:2666350-2666369 | None:intergenic | 30.0% | |
| AGTATCTCATTAACTGTAAC+CGG | - | chr6_1:2666585-2666604 | None:intergenic | 30.0% | |
| GTTACAGTTAATGAGATACT+AGG | + | chr6_1:2666585-2666604 | Msa0868870:CDS | 30.0% | |
| ATACTAGGACTAAACACTTT+AGG | + | chr6_1:2666600-2666619 | Msa0868870:CDS | 30.0% | |
| !! | ATCACAAAAGTACTCAACAA+AGG | + | chr6_1:2666762-2666781 | Msa0868870:CDS | 30.0% |
| CATTCAATTGAAAGTGAATG+AGG | - | chr6_1:2666812-2666831 | None:intergenic | 30.0% | |
| TTTCAATTGAATGTTGGGTA+TGG | + | chr6_1:2666819-2666838 | Msa0868870:CDS | 30.0% | |
| ACTATTGCTAATGCTGTATT+TGG | + | chr6_1:2666891-2666910 | Msa0868870:CDS | 30.0% | |
| CTATTGCTAATGCTGTATTT+GGG | + | chr6_1:2666892-2666911 | Msa0868870:CDS | 30.0% | |
| ! | CCACACAAAAGTCTTGTAAA+GGG | - | chr6_1:2666248-2666267 | None:intergenic | 35.0% |
| GCTATCAATGATACCAAGAA+TGG | + | chr6_1:2666267-2666286 | Msa0868870:CDS | 35.0% | |
| ATCAATGATACCAAGAATGG+TGG | + | chr6_1:2666270-2666289 | Msa0868870:CDS | 35.0% | |
| AGTATACATACCACCATTCT+TGG | - | chr6_1:2666283-2666302 | None:intergenic | 35.0% | |
| ! | TGTTGTGCAGTTTTTGTGAA+TGG | + | chr6_1:2666462-2666481 | Msa0868870:intron | 35.0% |
| TTCTTCTACTCAGTGAAAGA+AGG | + | chr6_1:2666525-2666544 | Msa0868870:CDS | 35.0% | |
| ! | TGAGTACTTTTGTGATGAGA+CGG | - | chr6_1:2666758-2666777 | None:intergenic | 35.0% |
| ! | TAGTGATTACACCTGGATTT+TGG | - | chr6_1:2666875-2666894 | None:intergenic | 35.0% |
| TTAGCAATAGTGATTACACC+TGG | - | chr6_1:2666882-2666901 | None:intergenic | 35.0% | |
| TCTTCAAAAACAATTCTGGG+TGG | + | chr6_1:2666983-2667002 | Msa0868870:CDS | 35.0% | |
| ! | CCACACAAAAGTCTTGTAAA+GGG | - | chr6_1:2666248-2666267 | None:intergenic | 35.0% |
| GCTATCAATGATACCAAGAA+TGG | + | chr6_1:2666267-2666286 | Msa0868870:CDS | 35.0% | |
| ATCAATGATACCAAGAATGG+TGG | + | chr6_1:2666270-2666289 | Msa0868870:CDS | 35.0% | |
| AGTATACATACCACCATTCT+TGG | - | chr6_1:2666283-2666302 | None:intergenic | 35.0% | |
| ! | TGTTGTGCAGTTTTTGTGAA+TGG | + | chr6_1:2666462-2666481 | Msa0868870:intron | 35.0% |
| TTCTTCTACTCAGTGAAAGA+AGG | + | chr6_1:2666525-2666544 | Msa0868870:CDS | 35.0% | |
| ! | TGAGTACTTTTGTGATGAGA+CGG | - | chr6_1:2666758-2666777 | None:intergenic | 35.0% |
| ! | TAGTGATTACACCTGGATTT+TGG | - | chr6_1:2666875-2666894 | None:intergenic | 35.0% |
| TTAGCAATAGTGATTACACC+TGG | - | chr6_1:2666882-2666901 | None:intergenic | 35.0% | |
| TCTTCAAAAACAATTCTGGG+TGG | + | chr6_1:2666983-2667002 | Msa0868870:CDS | 35.0% | |
| ACAAGATGCTAAAGCCAAGA+AGG | - | chr6_1:2666205-2666224 | None:intergenic | 40.0% | |
| ! | CAAAAGTCTTGTAAAGGGCT+GGG | - | chr6_1:2666243-2666262 | None:intergenic | 40.0% |
| ! | ACAAAAGTCTTGTAAAGGGC+TGG | - | chr6_1:2666244-2666263 | None:intergenic | 40.0% |
| ! | CCCTTTACAAGACTTTTGTG+TGG | + | chr6_1:2666245-2666264 | Msa0868870:CDS | 40.0% |
| ! | GCCACACAAAAGTCTTGTAA+AGG | - | chr6_1:2666249-2666268 | None:intergenic | 40.0% |
| TGTGAATGGCAAATTCTGCA+AGG | + | chr6_1:2666476-2666495 | Msa0868870:CDS | 40.0% | |
| TCATTTGCAGTAGCAAGCTT+TGG | - | chr6_1:2666504-2666523 | None:intergenic | 40.0% | |
| ACTTGGTTCAAAAGTGACAC+CGG | + | chr6_1:2666563-2666582 | Msa0868870:CDS | 40.0% | |
| ! | TAAGAATCTCAGTGGCTCTA+GGG | - | chr6_1:2666683-2666702 | None:intergenic | 40.0% |
| ATAAGAATCTCAGTGGCTCT+AGG | - | chr6_1:2666684-2666703 | None:intergenic | 40.0% | |
| CAACACGATAAGAATCTCAG+TGG | - | chr6_1:2666691-2666710 | None:intergenic | 40.0% | |
| CACTGAGATTCTTATCGTGT+TGG | + | chr6_1:2666689-2666708 | Msa0868870:CDS | 40.0% | |
| TGAGATTCTTATCGTGTTGG+AGG | + | chr6_1:2666692-2666711 | Msa0868870:CDS | 40.0% | |
| GAGATTCTTATCGTGTTGGA+GGG | + | chr6_1:2666693-2666712 | Msa0868870:CDS | 40.0% | |
| ! | TTTGTGATGAGACGGTTTTC+TGG | - | chr6_1:2666750-2666769 | None:intergenic | 40.0% |
| GATGTCTTCGTGTTTCCAAT+TGG | + | chr6_1:2666786-2666805 | Msa0868870:CDS | 40.0% | |
| TGAAAGTGAATGAGGCCAAT+TGG | - | chr6_1:2666804-2666823 | None:intergenic | 40.0% | |
| ATTGTCCACTTGGAAAGCTT+TGG | - | chr6_1:2666949-2666968 | None:intergenic | 40.0% | |
| CCACTATGTTATTGTCCACT+TGG | - | chr6_1:2666959-2666978 | None:intergenic | 40.0% | |
| CCAAGTGGACAATAACATAG+TGG | + | chr6_1:2666956-2666975 | Msa0868870:CDS | 40.0% | |
| ACAAGATGCTAAAGCCAAGA+AGG | - | chr6_1:2666205-2666224 | None:intergenic | 40.0% | |
| ! | CAAAAGTCTTGTAAAGGGCT+GGG | - | chr6_1:2666243-2666262 | None:intergenic | 40.0% |
| ! | ACAAAAGTCTTGTAAAGGGC+TGG | - | chr6_1:2666244-2666263 | None:intergenic | 40.0% |
| ! | CCCTTTACAAGACTTTTGTG+TGG | + | chr6_1:2666245-2666264 | Msa0868870:CDS | 40.0% |
| ! | GCCACACAAAAGTCTTGTAA+AGG | - | chr6_1:2666249-2666268 | None:intergenic | 40.0% |
| TGTGAATGGCAAATTCTGCA+AGG | + | chr6_1:2666476-2666495 | Msa0868870:CDS | 40.0% | |
| TCATTTGCAGTAGCAAGCTT+TGG | - | chr6_1:2666504-2666523 | None:intergenic | 40.0% | |
| ACTTGGTTCAAAAGTGACAC+CGG | + | chr6_1:2666563-2666582 | Msa0868870:CDS | 40.0% | |
| ! | TAAGAATCTCAGTGGCTCTA+GGG | - | chr6_1:2666683-2666702 | None:intergenic | 40.0% |
| ATAAGAATCTCAGTGGCTCT+AGG | - | chr6_1:2666684-2666703 | None:intergenic | 40.0% | |
| CAACACGATAAGAATCTCAG+TGG | - | chr6_1:2666691-2666710 | None:intergenic | 40.0% | |
| CACTGAGATTCTTATCGTGT+TGG | + | chr6_1:2666689-2666708 | Msa0868870:CDS | 40.0% | |
| TGAGATTCTTATCGTGTTGG+AGG | + | chr6_1:2666692-2666711 | Msa0868870:CDS | 40.0% | |
| GAGATTCTTATCGTGTTGGA+GGG | + | chr6_1:2666693-2666712 | Msa0868870:CDS | 40.0% | |
| ! | TTTGTGATGAGACGGTTTTC+TGG | - | chr6_1:2666750-2666769 | None:intergenic | 40.0% |
| GATGTCTTCGTGTTTCCAAT+TGG | + | chr6_1:2666786-2666805 | Msa0868870:CDS | 40.0% | |
| TGAAAGTGAATGAGGCCAAT+TGG | - | chr6_1:2666804-2666823 | None:intergenic | 40.0% | |
| ATTGTCCACTTGGAAAGCTT+TGG | - | chr6_1:2666949-2666968 | None:intergenic | 40.0% | |
| CCACTATGTTATTGTCCACT+TGG | - | chr6_1:2666959-2666978 | None:intergenic | 40.0% | |
| CCAAGTGGACAATAACATAG+TGG | + | chr6_1:2666956-2666975 | Msa0868870:CDS | 40.0% | |
| CTTGTTTGTGACAGCCTTCT+TGG | + | chr6_1:2666188-2666207 | Msa0868870:CDS | 45.0% | |
| TTGTAAAGGGCTGGGATCAA+AGG | - | chr6_1:2666235-2666254 | None:intergenic | 45.0% | |
| GGAAACACGTCAAATCCACT+TGG | + | chr6_1:2666546-2666565 | Msa0868870:CDS | 45.0% | |
| !!! | GGTGTCACTTTTGAACCAAG+TGG | - | chr6_1:2666564-2666583 | None:intergenic | 45.0% |
| !! | TTGGAGGGCACTCTTTATGT+TGG | + | chr6_1:2666708-2666727 | Msa0868870:CDS | 45.0% |
| !! | TGGAGGGCACTCTTTATGTT+GGG | + | chr6_1:2666709-2666728 | Msa0868870:CDS | 45.0% |
| GGAAATGCAGTTGTCATTGC+TGG | + | chr6_1:2666840-2666859 | Msa0868870:CDS | 45.0% | |
| TCTCACCAAAGCTTTCCAAG+TGG | + | chr6_1:2666941-2666960 | Msa0868870:CDS | 45.0% | |
| CTTGTTTGTGACAGCCTTCT+TGG | + | chr6_1:2666188-2666207 | Msa0868870:CDS | 45.0% | |
| TTGTAAAGGGCTGGGATCAA+AGG | - | chr6_1:2666235-2666254 | None:intergenic | 45.0% | |
| GGAAACACGTCAAATCCACT+TGG | + | chr6_1:2666546-2666565 | Msa0868870:CDS | 45.0% | |
| !!! | GGTGTCACTTTTGAACCAAG+TGG | - | chr6_1:2666564-2666583 | None:intergenic | 45.0% |
| !! | TTGGAGGGCACTCTTTATGT+TGG | + | chr6_1:2666708-2666727 | Msa0868870:CDS | 45.0% |
| !! | TGGAGGGCACTCTTTATGTT+GGG | + | chr6_1:2666709-2666728 | Msa0868870:CDS | 45.0% |
| GGAAATGCAGTTGTCATTGC+TGG | + | chr6_1:2666840-2666859 | Msa0868870:CDS | 45.0% | |
| TCTCACCAAAGCTTTCCAAG+TGG | + | chr6_1:2666941-2666960 | Msa0868870:CDS | 45.0% | |
| !! | TCGCATTGACTTCGCTGCTA+GGG | + | chr6_1:2666635-2666654 | Msa0868870:CDS | 50.0% |
| GGACTTAGCAGCCAAAATCC+AGG | + | chr6_1:2666861-2666880 | Msa0868870:CDS | 50.0% | |
| !! | TCGCATTGACTTCGCTGCTA+GGG | + | chr6_1:2666635-2666654 | Msa0868870:CDS | 50.0% |
| GGACTTAGCAGCCAAAATCC+AGG | + | chr6_1:2666861-2666880 | Msa0868870:CDS | 50.0% | |
| AGGGCTGGGATCAAAGGCAA+AGG | - | chr6_1:2666229-2666248 | None:intergenic | 55.0% | |
| !! | CTCGCATTGACTTCGCTGCT+AGG | + | chr6_1:2666634-2666653 | Msa0868870:CDS | 55.0% |
| !! | CGCATTGACTTCGCTGCTAG+GGG | + | chr6_1:2666636-2666655 | Msa0868870:CDS | 55.0% |
| !! | GCTCTAGGGTGAGTATGTGG+AGG | - | chr6_1:2666669-2666688 | None:intergenic | 55.0% |
| !! | GTGGCTCTAGGGTGAGTATG+TGG | - | chr6_1:2666672-2666691 | None:intergenic | 55.0% |
| AGGGCTGGGATCAAAGGCAA+AGG | - | chr6_1:2666229-2666248 | None:intergenic | 55.0% | |
| !! | CTCGCATTGACTTCGCTGCT+AGG | + | chr6_1:2666634-2666653 | Msa0868870:CDS | 55.0% |
| !! | CGCATTGACTTCGCTGCTAG+GGG | + | chr6_1:2666636-2666655 | Msa0868870:CDS | 55.0% |
| !! | GCTCTAGGGTGAGTATGTGG+AGG | - | chr6_1:2666669-2666688 | None:intergenic | 55.0% |
| !! | GTGGCTCTAGGGTGAGTATG+TGG | - | chr6_1:2666672-2666691 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 2666174 | 2667016 | 2666174 | ID=Msa0868870;Name=Msa0868870 |
| chr6_1 | mRNA | 2666174 | 2667016 | 2666174 | ID=Msa0868870-mRNA-1;Parent=Msa0868870;Name=Msa0868870-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|2|0|220 |
| chr6_1 | exon | 2666174 | 2666291 | 2666174 | ID=Msa0868870-mRNA-1:exon:777;Parent=Msa0868870-mRNA-1 |
| chr6_1 | exon | 2666472 | 2667016 | 2666472 | ID=Msa0868870-mRNA-1:exon:778;Parent=Msa0868870-mRNA-1 |
| chr6_1 | CDS | 2666174 | 2666291 | 2666174 | ID=Msa0868870-mRNA-1:cds;Parent=Msa0868870-mRNA-1 |
| chr6_1 | CDS | 2666472 | 2667016 | 2666472 | ID=Msa0868870-mRNA-1:cds;Parent=Msa0868870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
