AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427040 MtrunA17_Chr3g0129121 90.984 366 25 2 1 358 10 375 0.0 668
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427040 AT5G64930.1 34.169 319 182 9 37 347 90 388 1.41e-44 165

Find 132 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATGAAATTTGAAATTT+TGG 0.103819 3_2:+77729459 None:intergenic
TTCCAAACCTGCCTTGTTCT+TGG 0.209206 3_2:+77729394 None:intergenic
TGTTTCGCTCCACCCTCTTC+TGG 0.213278 3_2:-77727726 Msa0427040:CDS
AATATTATACTTGCCTCTTC+TGG 0.214955 3_2:+77727345 None:intergenic
CCTATCCCGCCACAGGTATT+TGG 0.216056 3_2:-77728071 Msa0427040:intron
GTTACATTTGGCTCTTATAT+TGG 0.225323 3_2:-77726492 Msa0427040:CDS
GGTAATAATGTTGCAGCTAT+TGG 0.237794 3_2:-77729260 Msa0427040:CDS
TTACAAAGAACTAAACTTAA+AGG 0.241495 3_2:-77729338 Msa0427040:CDS
AGTATTTGAGAAGTCTATTA+TGG 0.262387 3_2:-77727685 Msa0427040:CDS
TTACATTTGGCTCTTATATT+GGG 0.305383 3_2:-77726491 Msa0427040:CDS
CAAATACCTTCGACATAAAA+TGG 0.313208 3_2:+77726257 None:intergenic
TTCCAAGAACAAGGCAGGTT+TGG 0.322158 3_2:-77729396 Msa0427040:CDS
ATAATAGACTTCTCAAATAC+TGG 0.338799 3_2:+77727687 None:intergenic
TTGCGATGAATTATACGAAT+TGG 0.350702 3_2:+77729361 None:intergenic
AATTGATTGATCTACGATTT+CGG 0.356243 3_2:+77727833 None:intergenic
ATCAATATGATGAAAGTAAC+TGG 0.359996 3_2:+77726574 None:intergenic
GTAATAATGTTGCAGCTATT+GGG 0.361162 3_2:-77729259 Msa0427040:CDS
CAATTAGTCGTGAAGAGGTT+GGG 0.380024 3_2:-77727815 Msa0427040:CDS
AGTGTCGATCTCAGCCATTT+GGG 0.380127 3_2:+77729421 None:intergenic
TTGTTAATTATTATCTCCTA+TGG 0.380721 3_2:-77726061 Msa0427040:three_prime_UTR
ATATTGGGAGATTCTGTGTT+TGG 0.382470 3_2:-77726476 Msa0427040:CDS
TGATATATCCACAGCTAACT+TGG 0.384633 3_2:+77727548 None:intergenic
TTTGTCTGCAGTGTTGTGAT+TGG 0.387158 3_2:+77726400 None:intergenic
TTTAACCAGGTCACTGACTT+TGG 0.387363 3_2:+77726724 None:intergenic
TGCTTTACAATTCTAATCCT+TGG 0.392640 3_2:+77726197 None:intergenic
GCAGCTATTGGGTTTCCTCT+TGG 0.395073 3_2:-77729248 Msa0427040:CDS
TGCATTTCTTATCTATATGC+TGG 0.395276 3_2:-77726453 Msa0427040:CDS
TGCATAGACTGTCTTATTGC+TGG 0.399086 3_2:-77727453 Msa0427040:CDS
CCTCTGATAAATTTAGAACT+TGG 0.401901 3_2:+77727918 None:intergenic
TAGAATTGTAAAGCACTGTT+TGG 0.401975 3_2:-77726189 Msa0427040:three_prime_UTR
TAATTCATCTTTATAACGTT+GGG 0.403105 3_2:-77729486 Msa0427040:five_prime_UTR
AAGTGTCGATCTCAGCCATT+TGG 0.407585 3_2:+77729420 None:intergenic
AATGTCGGTCGCCGCTGTTA+TGG 0.409104 3_2:-77729225 Msa0427040:CDS
CGAATCCAATACTGGACAAT+TGG 0.410360 3_2:+77726367 None:intergenic
TACAAAGAACTAAACTTAAA+GGG 0.421502 3_2:-77729337 Msa0427040:CDS
GTGGAGCGAAACAAACCATT+TGG 0.422593 3_2:+77727736 None:intergenic
GGGATCCAATTGTCCAGTAT+TGG 0.427897 3_2:-77726372 Msa0427040:CDS
TGGGAGGAAGTGGTTACATT+TGG 0.433556 3_2:-77726504 Msa0427040:CDS
GAAATTGAAAGAGACAGAAT+TGG 0.434985 3_2:-77727604 Msa0427040:CDS
TTACACTGGATAGAGATTCT+TGG 0.435874 3_2:+77728223 None:intergenic
CTCACGTGATATTGCTATAG+AGG 0.452113 3_2:-77727889 Msa0427040:CDS
ACCACAAGTTAAGTTGCTCT+TGG 0.452407 3_2:+77726141 None:intergenic
ACAACACTGCAGACAAAGAA+AGG 0.453746 3_2:-77726394 Msa0427040:CDS
GAAACCGGCGAATCCAATAC+TGG 0.453805 3_2:+77726359 None:intergenic
GAATCATCGGCTAGCAATGA+AGG 0.454875 3_2:-77727972 Msa0427040:CDS
TGGGTTTCCTCTTGGAATGT+CGG 0.457541 3_2:-77729240 Msa0427040:CDS
GTATTTGGAGACAAGCTAGA+TGG 0.458976 3_2:-77728056 Msa0427040:CDS
ATTACCGACGAAAGATGATC+TGG 0.459956 3_2:+77728637 None:intergenic
GAACGGATTAATGAAGCTGC+TGG 0.464255 3_2:-77727378 Msa0427040:CDS
TCGATTAATTTATGAATCAT+CGG 0.470997 3_2:-77727985 Msa0427040:CDS
CAGTTAGAAGATACAAGATA+TGG 0.471609 3_2:-77727492 Msa0427040:CDS
ATCATATTGATGCTAGGAAT+CGG 0.475169 3_2:-77726562 Msa0427040:CDS
GTTGTGAGCCGAATGGTGTT+TGG 0.477690 3_2:-77726667 Msa0427040:CDS
ATACAATTGATATTGTAAGT+TGG 0.482388 3_2:+77726115 None:intergenic
CATTGACCTAAGCTAGCAAA+AGG 0.483365 3_2:+77726286 None:intergenic
TAAATTGAATAATATGAGGT+TGG 0.483853 3_2:-77727946 Msa0427040:CDS
GGTCGCCGCTGTTATGGCTC+AGG 0.485733 3_2:-77729219 Msa0427040:intron
GAGTCTCTGTTCGTCGCACA+AGG 0.486445 3_2:-77729283 Msa0427040:CDS
GCTTTGTACGCAATCCTTCA+CGG 0.486882 3_2:-77726424 Msa0427040:CDS
GCGTGGGCAATCAAACCAAA+TGG 0.492192 3_2:-77727751 Msa0427040:CDS
TTAAGAAACCAAACACCATT+CGG 0.492840 3_2:+77726659 None:intergenic
CTCTTCATTGAAACCCCAAA+TGG 0.492872 3_2:-77729435 Msa0427040:exon
GACCTCAAGACTGTTGAACT+TGG 0.503042 3_2:-77727645 Msa0427040:CDS
CAACACTGCAGACAAAGAAA+GGG 0.508358 3_2:-77726393 Msa0427040:CDS
TGTAAAGCACTGTTTGGTCA+TGG 0.508865 3_2:-77726183 Msa0427040:three_prime_UTR
TTAATTCATCTTTATAACGT+TGG 0.514589 3_2:-77729487 Msa0427040:five_prime_UTR
CTTATGTTTATAACTTTGAA+CGG 0.519189 3_2:-77727395 Msa0427040:CDS
ACTTTCATCATATTGATGCT+AGG 0.523684 3_2:-77726568 Msa0427040:CDS
GGAATAAATTGAATAATATG+AGG 0.525115 3_2:-77727950 Msa0427040:CDS
GTGCGACGAACAGAGACTCT+AGG 0.528010 3_2:+77729287 None:intergenic
AAATAGCATAGAAAAGAAAC+CGG 0.529156 3_2:+77726344 None:intergenic
GGAATCGGCTGTGGCTATTG+TGG 0.531204 3_2:-77726547 Msa0427040:CDS
ACTCGTGATATTGCTTTGCG+TGG 0.534604 3_2:-77727768 Msa0427040:CDS
TTGCGTATCTGCTCTTCCAA+CGG 0.536508 3_2:-77726624 Msa0427040:CDS
TTTAGGAACCTTCCTACTGG+TGG 0.539605 3_2:-77726750 Msa0427040:intron
TTGTCCAGTATTGGATTCGC+CGG 0.540204 3_2:-77726363 Msa0427040:CDS
TCAATTAGTCGTGAAGAGGT+TGG 0.540617 3_2:-77727816 Msa0427040:CDS
ACTTGTTCCAAGAACAAGGC+AGG 0.547264 3_2:-77729401 Msa0427040:CDS
AGCCAAACAAAACAAGCTGC+AGG 0.547505 3_2:+77726089 None:intergenic
AATTAGTCGTGAAGAGGTTG+GGG 0.548529 3_2:-77727814 Msa0427040:CDS
CCAAGTTCTAAATTTATCAG+AGG 0.549470 3_2:-77727918 Msa0427040:CDS
ATAGACACACTGGGAGGAAG+TGG 0.551696 3_2:-77726514 Msa0427040:CDS
AAGAACTAAACTTAAAGGGA+AGG 0.560116 3_2:-77729333 Msa0427040:CDS
TGTGCGTGTGATAGTAGCCC+TGG 0.564868 3_2:+77727858 None:intergenic
CGACACTTGTTCCAAGAACA+AGG 0.568523 3_2:-77729405 Msa0427040:CDS
CCGTCGACATAACTGATCCT+TGG 0.569295 3_2:+77726230 None:intergenic
GCTATAGAGGATGATCAACC+AGG 0.569754 3_2:-77727876 Msa0427040:CDS
TGCGACGAACAGAGACTCTA+GGG 0.572180 3_2:+77729288 None:intergenic
CTCGTGATATTGCTTTGCGT+GGG 0.580028 3_2:-77727767 Msa0427040:CDS
AACCATGTGTATAGACACAC+TGG 0.581583 3_2:-77726524 Msa0427040:CDS
GTGGTTCTACCATTGTGTTG+TGG 0.589142 3_2:-77726316 Msa0427040:CDS
TCCCAGTGTGTCTATACACA+TGG 0.593565 3_2:+77726522 None:intergenic
ATTGATGTATTATTATACAC+CGG 0.593802 3_2:-77726014 Msa0427040:three_prime_UTR
TTTGGAGTCCACCAGTAGGA+AGG 0.596122 3_2:+77726742 None:intergenic
TCAATCAATTAGTCGTGAAG+AGG 0.596638 3_2:-77727820 Msa0427040:CDS
ATGACAATGTTGCTGACCGT+TGG 0.600468 3_2:+77726608 None:intergenic
GACCAAGTTCAACAGTCTTG+AGG 0.602623 3_2:+77727643 None:intergenic
AACTTTCAACATTACACCAT+AGG 0.604889 3_2:+77726045 None:intergenic
TTTGGGGTTTCAATGAAGAG+AGG 0.608518 3_2:+77729438 None:intergenic
GTCTCTGTTCGTCGCACAAG+GGG 0.614024 3_2:-77729281 Msa0427040:CDS
GTCTCCAGATCATCTTTCGT+CGG 0.614069 3_2:-77728641 Msa0427040:intron
ACCAAGAGCAACTTAACTTG+TGG 0.614575 3_2:-77726142 Msa0427040:three_prime_UTR
AGAACTAAACTTAAAGGGAA+GGG 0.614995 3_2:-77729332 Msa0427040:CDS
AATCATCGGCTAGCAATGAA+GGG 0.615080 3_2:-77727971 Msa0427040:CDS
TTGATGCTAGGAATCGGCTG+TGG 0.621482 3_2:-77726556 Msa0427040:CDS
TTAGCTAAAGCTCCAGAAGA+GGG 0.625433 3_2:+77727714 None:intergenic
TGGATCATGTACTCCAGAAG+AGG 0.626196 3_2:-77727358 Msa0427040:CDS
ATTAGCTAAAGCTCCAGAAG+AGG 0.627717 3_2:+77727713 None:intergenic
GTGTTGTGATTGGTCCGTGA+AGG 0.630791 3_2:+77726410 None:intergenic
CAGTCTTGAGGTCATTAGAA+CGG 0.632207 3_2:+77727655 None:intergenic
CACGAGTAACTGACTCCATG+TGG 0.635878 3_2:+77727784 None:intergenic
GCAGAGATCCAAGTTAGCTG+TGG 0.637768 3_2:-77727556 Msa0427040:CDS
ATGCACACTTGAATTTAACC+AGG 0.638147 3_2:+77726711 None:intergenic
AGTCTCTGTTCGTCGCACAA+GGG 0.643071 3_2:-77729282 Msa0427040:CDS
TCGACGGTGTTTGATGACCA+AGG 0.644991 3_2:-77726214 Msa0427040:three_prime_UTR
GCTAAAGCTCCAGAAGAGGG+TGG 0.645951 3_2:+77727717 None:intergenic
AACACTGCAGACAAAGAAAG+GGG 0.647953 3_2:-77726392 Msa0427040:CDS
CCAAGGATCAGTTATGTCGA+CGG 0.660123 3_2:-77726230 Msa0427040:three_prime_UTR
GGACTCCAAAGTCAGTGACC+TGG 0.664487 3_2:-77726729 Msa0427040:CDS
AGTTCGAGTTGTGAGCCGAA+TGG 0.664589 3_2:-77726674 Msa0427040:CDS
TCGAAGGTATTTGATGACCA+AGG 0.667029 3_2:-77726247 Msa0427040:three_prime_UTR
GTGTCGATCTCAGCCATTTG+GGG 0.669859 3_2:+77729422 None:intergenic
TGACTTTGGAGTCCACCAGT+AGG 0.671529 3_2:+77726738 None:intergenic
CTATAGAGGATGATCAACCA+GGG 0.671615 3_2:-77727875 Msa0427040:CDS
GTGAAGGATTGCGTACAAAG+CGG 0.678570 3_2:+77726426 None:intergenic
GGTTGGGGATAACTTCCACA+TGG 0.679592 3_2:-77727799 Msa0427040:CDS
GGCAGAAGACCACAACACAA+TGG 0.680312 3_2:+77726307 None:intergenic
ACCATGTGTATAGACACACT+GGG 0.709070 3_2:-77726523 Msa0427040:CDS
GCGGCGACCGACATTCCAAG+AGG 0.714229 3_2:+77729233 None:intergenic
ACAAGCTAGATGGTTTGACA+AGG 0.723594 3_2:-77728046 Msa0427040:CDS
ATGTGTATAGACACACTGGG+AGG 0.773147 3_2:-77726520 Msa0427040:CDS
GTTTACCTGAGCCATAACAG+CGG 0.843584 3_2:+77729214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTAAT+TGG - chr3_2:77726721-77726740 Msa0427040:CDS 0.0%
!!! TTTAAAAATTAAAGCTTTAA+CGG + chr3_2:77726287-77726306 None:intergenic 10.0%
!! TTAAAAAATGGTTATAATAT+AGG + chr3_2:77728407-77728426 None:intergenic 10.0%
!!! CTTTTTATAATTTAAAAATC+TGG - chr3_2:77729483-77729502 Msa0427040:five_prime_UTR 10.0%
!!! TTTTTTTTTTTAATTGGTAC+AGG - chr3_2:77726727-77726746 Msa0427040:CDS 15.0%
!! AAAACCGTTATAAAAAAATT+TGG - chr3_2:77727162-77727181 Msa0427040:intron 15.0%
!! AAACCGTTATAAAAAAATTT+GGG - chr3_2:77727163-77727182 Msa0427040:intron 15.0%
!!! AAACCCAAATTTTTTTATAA+CGG + chr3_2:77727169-77727188 None:intergenic 15.0%
!! GAAATAATATTTCAATGATA+TGG + chr3_2:77728294-77728313 None:intergenic 15.0%
!!! GCTAATTATTCTTTAAAAAA+TGG + chr3_2:77728419-77728438 None:intergenic 15.0%
!! AAAAATGAAAAACTAAACAA+GGG + chr3_2:77728544-77728563 None:intergenic 15.0%
!! AAAAAATGAAAAACTAAACA+AGG + chr3_2:77728545-77728564 None:intergenic 15.0%
!! TTTAAATTATAAAAAGAAGC+CGG + chr3_2:77729479-77729498 None:intergenic 15.0%
!! TTAATTCATCTTTATAACGT+TGG - chr3_2:77725984-77726003 Msa0427040:three_prime_UTR 20.0%
!! TAATTCATCTTTATAACGTT+GGG - chr3_2:77725985-77726004 Msa0427040:three_prime_UTR 20.0%
!!! GGAAATGAAATTTGAAATTT+TGG + chr3_2:77726015-77726034 None:intergenic 20.0%
!! TTACAAAGAACTAAACTTAA+AGG - chr3_2:77726133-77726152 Msa0427040:three_prime_UTR 20.0%
!! TACAAAGAACTAAACTTAAA+GGG - chr3_2:77726134-77726153 Msa0427040:three_prime_UTR 20.0%
!! TTTCTGATTATTACTGTATT+GGG - chr3_2:77726316-77726335 Msa0427040:CDS 20.0%
!!! AAGCTTTTGTTTTTGTTTTT+AGG - chr3_2:77726773-77726792 Msa0427040:intron 20.0%
!! TGGGTTAAAACTTAAAAATA+AGG + chr3_2:77726866-77726885 None:intergenic 20.0%
!! TTTCGTTAAAACTAAAACTT+GGG + chr3_2:77726885-77726904 None:intergenic 20.0%
!! ATTTCGTTAAAACTAAAACT+TGG + chr3_2:77726886-77726905 None:intergenic 20.0%
!!! TCTAAAGTCAAACATATTAT+TGG - chr3_2:77727041-77727060 Msa0427040:intron 20.0%
!! TTGTTAAAACAATGATGTTT+AGG - chr3_2:77727099-77727118 Msa0427040:intron 20.0%
!! TGTTAAAACAATGATGTTTA+GGG - chr3_2:77727100-77727119 Msa0427040:intron 20.0%
!! TCGATTAATTTATGAATCAT+CGG - chr3_2:77727486-77727505 Msa0427040:CDS 20.0%
!! GGAATAAATTGAATAATATG+AGG - chr3_2:77727521-77727540 Msa0427040:CDS 20.0%
!! TAAATTGAATAATATGAGGT+TGG - chr3_2:77727525-77727544 Msa0427040:CDS 20.0%
!! CTTATGTTTATAACTTTGAA+CGG - chr3_2:77728076-77728095 Msa0427040:intron 20.0%
!! CAAGATGAAAATAACTAATA+GGG - chr3_2:77728208-77728227 Msa0427040:intron 20.0%
!! AAGATGAAAATAACTAATAG+GGG - chr3_2:77728209-77728228 Msa0427040:intron 20.0%
!!! ACAATTTATTTTGAGAAAGT+GGG + chr3_2:77728499-77728518 None:intergenic 20.0%
!!! TACAATTTATTTTGAGAAAG+TGG + chr3_2:77728500-77728519 None:intergenic 20.0%
!! ATACAATTGATATTGTAAGT+TGG + chr3_2:77729359-77729378 None:intergenic 20.0%
!! TTGTTAATTATTATCTCCTA+TGG - chr3_2:77729410-77729429 Msa0427040:CDS 20.0%
!! ATTGATGTATTATTATACAC+CGG - chr3_2:77729457-77729476 Msa0427040:five_prime_UTR 20.0%
! CTTTCTGATTATTACTGTAT+TGG - chr3_2:77726315-77726334 Msa0427040:CDS 25.0%
!! CATTAAAGCAGCAATTTTTA+AGG + chr3_2:77726354-77726373 None:intergenic 25.0%
!! ATTTTTGTAACACATCACAT+CGG + chr3_2:77726402-77726421 None:intergenic 25.0%
!! CAAGTTAGAATCAATTTTAG+AGG - chr3_2:77726572-77726591 Msa0427040:CDS 25.0%
!!! GTATTTATTGATTCTGTTCA+TGG - chr3_2:77726749-77726768 Msa0427040:intron 25.0%
! AACGATGTAAAATGTTTACA+TGG + chr3_2:77726965-77726984 None:intergenic 25.0%
!! TTTTGAATCATCTAACGATT+TGG + chr3_2:77726996-77727015 None:intergenic 25.0%
! ATGAATTAACAATTGATGTC+TGG + chr3_2:77727275-77727294 None:intergenic 25.0%
! TGTAGTAAAATCACAATCAA+GGG + chr3_2:77727298-77727317 None:intergenic 25.0%
! ATGTAGTAAAATCACAATCA+AGG + chr3_2:77727299-77727318 None:intergenic 25.0%
! AATTGATTGATCTACGATTT+CGG + chr3_2:77727641-77727660 None:intergenic 25.0%
! ATAATAGACTTCTCAAATAC+TGG + chr3_2:77727787-77727806 None:intergenic 25.0%
! AGTATTTGAGAAGTCTATTA+TGG - chr3_2:77727786-77727805 Msa0427040:CDS 25.0%
! CATAGAATAAAATTGGAACA+GGG + chr3_2:77728160-77728179 None:intergenic 25.0%
! GCAAGATGAAAATAACTAAT+AGG - chr3_2:77728207-77728226 Msa0427040:intron 25.0%
! ATATTTGAAAGATCACTGAT+AGG - chr3_2:77728266-77728285 Msa0427040:intron 25.0%
! TATTTGAAAGATCACTGATA+GGG - chr3_2:77728267-77728286 Msa0427040:intron 25.0%
!!! GACAATATGATGGATTTTAT+TGG + chr3_2:77728376-77728395 None:intergenic 25.0%
! GCAATCTAATTTAAGAACTA+AGG - chr3_2:77728608-77728627 Msa0427040:intron 25.0%
! AGGTGCATATTATGTAAAAT+AGG - chr3_2:77728628-77728647 Msa0427040:intron 25.0%
! TGCATATTATGTAAAATAGG+AGG - chr3_2:77728631-77728650 Msa0427040:intron 25.0%
!!! AACGGTGTTTTTTCTATTTT+AGG - chr3_2:77728704-77728723 Msa0427040:intron 25.0%
! ATCAATATGATGAAAGTAAC+TGG + chr3_2:77728900-77728919 None:intergenic 25.0%
!!! TTACATTTGGCTCTTATATT+GGG - chr3_2:77728980-77728999 Msa0427040:intron 25.0%
! AAATAGCATAGAAAAGAAAC+CGG + chr3_2:77729130-77729149 None:intergenic 25.0%
TTGCGATGAATTATACGAAT+TGG + chr3_2:77726113-77726132 None:intergenic 30.0%
AAGAACTAAACTTAAAGGGA+AGG - chr3_2:77726138-77726157 Msa0427040:three_prime_UTR 30.0%
AGAACTAAACTTAAAGGGAA+GGG - chr3_2:77726139-77726158 Msa0427040:three_prime_UTR 30.0%
GTAATAATGTTGCAGCTATT+GGG - chr3_2:77726212-77726231 Msa0427040:three_prime_UTR 30.0%
! ATTCAACTAGCTCTTAACTA+AGG + chr3_2:77726443-77726462 None:intergenic 30.0%
! CAAAACCAATTTTATGTGTC+TGG - chr3_2:77726637-77726656 Msa0427040:CDS 30.0%
TACTTCCAGACACATAAAAT+TGG + chr3_2:77726645-77726664 None:intergenic 30.0%
!!! TTGTTTTAGTGTGTTTGGTT+TGG + chr3_2:77726685-77726704 None:intergenic 30.0%
!!! ATCGATTGTTTTAGTGTGTT+TGG + chr3_2:77726690-77726709 None:intergenic 30.0%
! GTCAAACATATTATTGGTTG+TGG - chr3_2:77727047-77727066 Msa0427040:intron 30.0%
! CCTCTGATAAATTTAGAACT+TGG + chr3_2:77727556-77727575 None:intergenic 30.0%
!! CCAAGTTCTAAATTTATCAG+AGG - chr3_2:77727553-77727572 Msa0427040:CDS 30.0%
GAAATTGAAAGAGACAGAAT+TGG - chr3_2:77727867-77727886 Msa0427040:CDS 30.0%
CAGTTAGAAGATACAAGATA+TGG - chr3_2:77727979-77727998 Msa0427040:CDS 30.0%
!!! ATGTCATCCTCACTTTTTTA+TGG - chr3_2:77728051-77728070 Msa0427040:CDS 30.0%
ATAAGCACCATAAAAAAGTG+AGG + chr3_2:77728061-77728080 None:intergenic 30.0%
AATATTATACTTGCCTCTTC+TGG + chr3_2:77728129-77728148 None:intergenic 30.0%
GCATAGAATAAAATTGGAAC+AGG + chr3_2:77728161-77728180 None:intergenic 30.0%
CCTGAAGCATAGAATAAAAT+TGG + chr3_2:77728167-77728186 None:intergenic 30.0%
! CCAATTTTATTCTATGCTTC+AGG - chr3_2:77728164-77728183 Msa0427040:intron 30.0%
ATTTGAAAGATCACTGATAG+GGG - chr3_2:77728268-77728287 Msa0427040:intron 30.0%
AATATTCCCAAATTGAGCAA+AGG + chr3_2:77728684-77728703 None:intergenic 30.0%
GCTCAATTTGGGAATATTAA+CGG - chr3_2:77728686-77728705 Msa0427040:intron 30.0%
TTAAGAAACCAAACACCATT+CGG + chr3_2:77728815-77728834 None:intergenic 30.0%
ACTTTCATCATATTGATGCT+AGG - chr3_2:77728903-77728922 Msa0427040:intron 30.0%
ATCATATTGATGCTAGGAAT+CGG - chr3_2:77728909-77728928 Msa0427040:intron 30.0%
!! GTTACATTTGGCTCTTATAT+TGG - chr3_2:77728979-77728998 Msa0427040:intron 30.0%
TGCATTTCTTATCTATATGC+TGG - chr3_2:77729018-77729037 Msa0427040:intron 30.0%
!!! TTTCTATGCTATTTTGCTTG+TGG - chr3_2:77729136-77729155 Msa0427040:intron 30.0%
CAAATACCTTCGACATAAAA+TGG + chr3_2:77729217-77729236 None:intergenic 30.0%
TGCTTTACAATTCTAATCCT+TGG + chr3_2:77729277-77729296 None:intergenic 30.0%
!! TAGAATTGTAAAGCACTGTT+TGG - chr3_2:77729282-77729301 Msa0427040:CDS 30.0%
AACTTTCAACATTACACCAT+AGG + chr3_2:77729429-77729448 None:intergenic 30.0%
GGTAATAATGTTGCAGCTAT+TGG - chr3_2:77726211-77726230 Msa0427040:three_prime_UTR 35.0%
!! TTATGTGTCTGGAAGTACTT+TGG - chr3_2:77726648-77726667 Msa0427040:CDS 35.0%
AAATGTTTACATGGACAGTG+TGG + chr3_2:77726956-77726975 None:intergenic 35.0%
TTACACTGGATAGAGATTCT+TGG + chr3_2:77727251-77727270 None:intergenic 35.0%
TCAATCAATTAGTCGTGAAG+AGG - chr3_2:77727651-77727670 Msa0427040:CDS 35.0%
TGATATATCCACAGCTAACT+TGG + chr3_2:77727926-77727945 None:intergenic 35.0%
GGCTTTACATGACAATATGA+TGG + chr3_2:77728386-77728405 None:intergenic 35.0%
AGCATTTCCTTTGCTCAATT+TGG - chr3_2:77728674-77728693 Msa0427040:CDS 35.0%
GCATTTCCTTTGCTCAATTT+GGG - chr3_2:77728675-77728694 Msa0427040:CDS 35.0%
!! TATTTTAGGAACCTTCCTAC+TGG - chr3_2:77728718-77728737 Msa0427040:intron 35.0%
ATGCACACTTGAATTTAACC+AGG + chr3_2:77728763-77728782 None:intergenic 35.0%
ATATTGGGAGATTCTGTGTT+TGG - chr3_2:77728995-77729014 Msa0427040:intron 35.0%
! GAAAGACCATTTTATGTCGA+AGG - chr3_2:77729208-77729227 Msa0427040:intron 35.0%
! TTTGGGGTTTCAATGAAGAG+AGG + chr3_2:77726036-77726055 None:intergenic 40.0%
CTCTTCATTGAAACCCCAAA+TGG - chr3_2:77726036-77726055 Msa0427040:three_prime_UTR 40.0%
ATTACCGACGAAAGATGATC+TGG + chr3_2:77726837-77726856 None:intergenic 40.0%
! AATTGATGTCTGGCTTACAC+TGG + chr3_2:77727265-77727284 None:intergenic 40.0%
CATCGACAAGAAATCTGTCA+GGG + chr3_2:77727324-77727343 None:intergenic 40.0%
ACATCGACAAGAAATCTGTC+AGG + chr3_2:77727325-77727344 None:intergenic 40.0%
AAATCAAAACAAGCGTCACG+CGG + chr3_2:77727377-77727396 None:intergenic 40.0%
GTATTTGGAGACAAGCTAGA+TGG - chr3_2:77727415-77727434 Msa0427040:CDS 40.0%
ACAAGCTAGATGGTTTGACA+AGG - chr3_2:77727425-77727444 Msa0427040:CDS 40.0%
! AATCATCGGCTAGCAATGAA+GGG - chr3_2:77727500-77727519 Msa0427040:CDS 40.0%
CTCACGTGATATTGCTATAG+AGG - chr3_2:77727582-77727601 Msa0427040:CDS 40.0%
CTATAGAGGATGATCAACCA+GGG - chr3_2:77727596-77727615 Msa0427040:CDS 40.0%
TCAATTAGTCGTGAAGAGGT+TGG - chr3_2:77727655-77727674 Msa0427040:CDS 40.0%
CAATTAGTCGTGAAGAGGTT+GGG - chr3_2:77727656-77727675 Msa0427040:CDS 40.0%
AATTAGTCGTGAAGAGGTTG+GGG - chr3_2:77727657-77727676 Msa0427040:CDS 40.0%
TTAGCTAAAGCTCCAGAAGA+GGG + chr3_2:77727760-77727779 None:intergenic 40.0%
ATTAGCTAAAGCTCCAGAAG+AGG + chr3_2:77727761-77727780 None:intergenic 40.0%
CAGTCTTGAGGTCATTAGAA+CGG + chr3_2:77727819-77727838 None:intergenic 40.0%
! TGCATAGACTGTCTTATTGC+TGG - chr3_2:77728018-77728037 Msa0427040:CDS 40.0%
! GCGATATTAGTTTACACCGA+CGG - chr3_2:77728466-77728485 Msa0427040:intron 40.0%
!! TTTAACCAGGTCACTGACTT+TGG + chr3_2:77728750-77728769 None:intergenic 40.0%
AACCATGTGTATAGACACAC+TGG - chr3_2:77728947-77728966 Msa0427040:intron 40.0%
ACCATGTGTATAGACACACT+GGG - chr3_2:77728948-77728967 Msa0427040:intron 40.0%
TTTGTCTGCAGTGTTGTGAT+TGG + chr3_2:77729074-77729093 None:intergenic 40.0%
ACAACACTGCAGACAAAGAA+AGG - chr3_2:77729077-77729096 Msa0427040:intron 40.0%
CAACACTGCAGACAAAGAAA+GGG - chr3_2:77729078-77729097 Msa0427040:intron 40.0%
AACACTGCAGACAAAGAAAG+GGG - chr3_2:77729079-77729098 Msa0427040:intron 40.0%
CGAATCCAATACTGGACAAT+TGG + chr3_2:77729107-77729126 None:intergenic 40.0%
CATTGACCTAAGCTAGCAAA+AGG + chr3_2:77729188-77729207 None:intergenic 40.0%
!! CTTTTGCTAGCTTAGGTCAA+TGG - chr3_2:77729186-77729205 Msa0427040:intron 40.0%
!! TCGAAGGTATTTGATGACCA+AGG - chr3_2:77729224-77729243 Msa0427040:CDS 40.0%
!! TGTAAAGCACTGTTTGGTCA+TGG - chr3_2:77729288-77729307 Msa0427040:CDS 40.0%
! ACCAAGAGCAACTTAACTTG+TGG - chr3_2:77729329-77729348 Msa0427040:CDS 40.0%
! ACCACAAGTTAAGTTGCTCT+TGG + chr3_2:77729333-77729352 None:intergenic 40.0%
!! AGTGTCGATCTCAGCCATTT+GGG + chr3_2:77726053-77726072 None:intergenic 45.0%
!! AAGTGTCGATCTCAGCCATT+TGG + chr3_2:77726054-77726073 None:intergenic 45.0%
CGACACTTGTTCCAAGAACA+AGG - chr3_2:77726066-77726085 Msa0427040:three_prime_UTR 45.0%
ACTTGTTCCAAGAACAAGGC+AGG - chr3_2:77726070-77726089 Msa0427040:three_prime_UTR 45.0%
TTCCAAGAACAAGGCAGGTT+TGG - chr3_2:77726075-77726094 Msa0427040:three_prime_UTR 45.0%
! TTCCAAACCTGCCTTGTTCT+TGG + chr3_2:77726080-77726099 None:intergenic 45.0%
TGGGTTTCCTCTTGGAATGT+CGG - chr3_2:77726231-77726250 Msa0427040:three_prime_UTR 45.0%
GTTTACCTGAGCCATAACAG+CGG + chr3_2:77726260-77726279 None:intergenic 45.0%
GCTGTTATGGCTCAGGTAAA+CGG - chr3_2:77726259-77726278 Msa0427040:three_prime_UTR 45.0%
GTCTCCAGATCATCTTTCGT+CGG - chr3_2:77726830-77726849 Msa0427040:intron 45.0%
AAGGCAGACAAACAGTGGAA+CGG + chr3_2:77727207-77727226 None:intergenic 45.0%
TCTACAAGGCAGACAAACAG+TGG + chr3_2:77727212-77727231 None:intergenic 45.0%
TTGTCTCCAAATACCTGTGG+CGG + chr3_2:77727409-77727428 None:intergenic 45.0%
AGCTTGTCTCCAAATACCTG+TGG + chr3_2:77727412-77727431 None:intergenic 45.0%
! GAATCATCGGCTAGCAATGA+AGG - chr3_2:77727499-77727518 Msa0427040:CDS 45.0%
GCTATAGAGGATGATCAACC+AGG - chr3_2:77727595-77727614 Msa0427040:CDS 45.0%
ACTCGTGATATTGCTTTGCG+TGG - chr3_2:77727703-77727722 Msa0427040:CDS 45.0%
CTCGTGATATTGCTTTGCGT+GGG - chr3_2:77727704-77727723 Msa0427040:CDS 45.0%
GTGGAGCGAAACAAACCATT+TGG + chr3_2:77727738-77727757 None:intergenic 45.0%
GACCTCAAGACTGTTGAACT+TGG - chr3_2:77727826-77727845 Msa0427040:CDS 45.0%
GACCAAGTTCAACAGTCTTG+AGG + chr3_2:77727831-77727850 None:intergenic 45.0%
!! GAACGGATTAATGAAGCTGC+TGG - chr3_2:77728093-77728112 Msa0427040:intron 45.0%
TGGATCATGTACTCCAGAAG+AGG - chr3_2:77728113-77728132 Msa0427040:intron 45.0%
TTTAGGAACCTTCCTACTGG+TGG - chr3_2:77728721-77728740 Msa0427040:intron 45.0%
TTGCGTATCTGCTCTTCCAA+CGG - chr3_2:77728847-77728866 Msa0427040:intron 45.0%
ATGACAATGTTGCTGACCGT+TGG + chr3_2:77728866-77728885 None:intergenic 45.0%
TCCCAGTGTGTCTATACACA+TGG + chr3_2:77728952-77728971 None:intergenic 45.0%
ATGTGTATAGACACACTGGG+AGG - chr3_2:77728951-77728970 Msa0427040:intron 45.0%
TGGGAGGAAGTGGTTACATT+TGG - chr3_2:77728967-77728986 Msa0427040:intron 45.0%
GTGAAGGATTGCGTACAAAG+CGG + chr3_2:77729048-77729067 None:intergenic 45.0%
GCTTTGTACGCAATCCTTCA+CGG - chr3_2:77729047-77729066 Msa0427040:intron 45.0%
GGGATCCAATTGTCCAGTAT+TGG - chr3_2:77729099-77729118 Msa0427040:intron 45.0%
! TTGTCCAGTATTGGATTCGC+CGG - chr3_2:77729108-77729127 Msa0427040:intron 45.0%
! GTGGTTCTACCATTGTGTTG+TGG - chr3_2:77729155-77729174 Msa0427040:intron 45.0%
!! CTTCTGCCTTTTGCTAGCTT+AGG - chr3_2:77729179-77729198 Msa0427040:intron 45.0%
CCAAGGATCAGTTATGTCGA+CGG - chr3_2:77729241-77729260 Msa0427040:CDS 45.0%
!!! TGCCTGCAGCTTGTTTTGTT+TGG - chr3_2:77729380-77729399 Msa0427040:CDS 45.0%
AGCCAAACAAAACAAGCTGC+AGG + chr3_2:77729385-77729404 None:intergenic 45.0%
! GTGTCGATCTCAGCCATTTG+GGG + chr3_2:77726052-77726071 None:intergenic 50.0%
TGCGACGAACAGAGACTCTA+GGG + chr3_2:77726186-77726205 None:intergenic 50.0%
AGTCTCTGTTCGTCGCACAA+GGG - chr3_2:77726189-77726208 Msa0427040:three_prime_UTR 50.0%
GCAGCTATTGGGTTTCCTCT+TGG - chr3_2:77726223-77726242 Msa0427040:three_prime_UTR 50.0%
CGCAGATGTGCACATCTACA+AGG + chr3_2:77727226-77727245 None:intergenic 50.0%
TGTCTCCAAATACCTGTGGC+GGG + chr3_2:77727408-77727427 None:intergenic 50.0%
GGTTGGGGATAACTTCCACA+TGG - chr3_2:77727672-77727691 Msa0427040:CDS 50.0%
! CACGAGTAACTGACTCCATG+TGG + chr3_2:77727690-77727709 None:intergenic 50.0%
GCGTGGGCAATCAAACCAAA+TGG - chr3_2:77727720-77727739 Msa0427040:CDS 50.0%
GCAGAGATCCAAGTTAGCTG+TGG - chr3_2:77727915-77727934 Msa0427040:CDS 50.0%
! TTTGGAGTCCACCAGTAGGA+AGG + chr3_2:77728732-77728751 None:intergenic 50.0%
!! TGACTTTGGAGTCCACCAGT+AGG + chr3_2:77728736-77728755 None:intergenic 50.0%
!! AGTTCGAGTTGTGAGCCGAA+TGG - chr3_2:77728797-77728816 Msa0427040:intron 50.0%
GTTGTGAGCCGAATGGTGTT+TGG - chr3_2:77728804-77728823 Msa0427040:intron 50.0%
TTGATGCTAGGAATCGGCTG+TGG - chr3_2:77728915-77728934 Msa0427040:intron 50.0%
ATAGACACACTGGGAGGAAG+TGG - chr3_2:77728957-77728976 Msa0427040:intron 50.0%
! GTGTTGTGATTGGTCCGTGA+AGG + chr3_2:77729064-77729083 None:intergenic 50.0%
GAAACCGGCGAATCCAATAC+TGG + chr3_2:77729115-77729134 None:intergenic 50.0%
GGCAGAAGACCACAACACAA+TGG + chr3_2:77729167-77729186 None:intergenic 50.0%
CCGTCGACATAACTGATCCT+TGG + chr3_2:77729244-77729263 None:intergenic 50.0%
! TCGACGGTGTTTGATGACCA+AGG - chr3_2:77729257-77729276 Msa0427040:CDS 50.0%
GTGCGACGAACAGAGACTCT+AGG + chr3_2:77726187-77726206 None:intergenic 55.0%
GAGTCTCTGTTCGTCGCACA+AGG - chr3_2:77726188-77726207 Msa0427040:three_prime_UTR 55.0%
GTCTCTGTTCGTCGCACAAG+GGG - chr3_2:77726190-77726209 Msa0427040:three_prime_UTR 55.0%
AATGTCGGTCGCCGCTGTTA+TGG - chr3_2:77726246-77726265 Msa0427040:three_prime_UTR 55.0%
CACGCGGACATCACTTCAAC+AGG + chr3_2:77727361-77727380 None:intergenic 55.0%
ATTTCTGCCTATCCCGCCAC+AGG - chr3_2:77727393-77727412 Msa0427040:CDS 55.0%
! CCAAATACCTGTGGCGGGAT+AGG + chr3_2:77727403-77727422 None:intergenic 55.0%
CCTATCCCGCCACAGGTATT+TGG - chr3_2:77727400-77727419 Msa0427040:CDS 55.0%
TGTGCGTGTGATAGTAGCCC+TGG + chr3_2:77727616-77727635 None:intergenic 55.0%
TGTTTCGCTCCACCCTCTTC+TGG - chr3_2:77727745-77727764 Msa0427040:CDS 55.0%
GCTAAAGCTCCAGAAGAGGG+TGG + chr3_2:77727757-77727776 None:intergenic 55.0%
GAAAGTGGGACATGCACCGT+CGG + chr3_2:77728485-77728504 None:intergenic 55.0%
GGACTCCAAAGTCAGTGACC+TGG - chr3_2:77728742-77728761 Msa0427040:intron 55.0%
GGAATCGGCTGTGGCTATTG+TGG - chr3_2:77728924-77728943 Msa0427040:intron 55.0%
GCGGCGACCGACATTCCAAG+AGG + chr3_2:77726241-77726260 None:intergenic 65.0%
GGTCGCCGCTGTTATGGCTC+AGG - chr3_2:77726252-77726271 Msa0427040:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 77725975 77729518 77725975 ID=Msa0427040;Name=Msa0427040
chr3_2 mRNA 77725975 77729518 77725975 ID=Msa0427040-mRNA-1;Parent=Msa0427040;Name=Msa0427040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=80|1|1|1|1|1|5|323|501
chr3_2 exon 77725975 77726767 77725975 ID=Msa0427040-mRNA-1:exon:20330;Parent=Msa0427040-mRNA-1
chr3_2 exon 77727355 77728078 77727355 ID=Msa0427040-mRNA-1:exon:20329;Parent=Msa0427040-mRNA-1
chr3_2 exon 77728227 77728262 77728227 ID=Msa0427040-mRNA-1:exon:20328;Parent=Msa0427040-mRNA-1
chr3_2 exon 77728642 77728698 77728642 ID=Msa0427040-mRNA-1:exon:20327;Parent=Msa0427040-mRNA-1
chr3_2 exon 77729220 77729518 77729220 ID=Msa0427040-mRNA-1:exon:20326;Parent=Msa0427040-mRNA-1
chr3_2 five_prime_UTR 77729439 77729518 77729439 ID=Msa0427040-mRNA-1:five_prime_utr;Parent=Msa0427040-mRNA-1
chr3_2 CDS 77729220 77729438 77729220 ID=Msa0427040-mRNA-1:cds;Parent=Msa0427040-mRNA-1
chr3_2 CDS 77728642 77728698 77728642 ID=Msa0427040-mRNA-1:cds;Parent=Msa0427040-mRNA-1
chr3_2 CDS 77728227 77728262 77728227 ID=Msa0427040-mRNA-1:cds;Parent=Msa0427040-mRNA-1
chr3_2 CDS 77727355 77728078 77727355 ID=Msa0427040-mRNA-1:cds;Parent=Msa0427040-mRNA-1
chr3_2 CDS 77726298 77726767 77726298 ID=Msa0427040-mRNA-1:cds;Parent=Msa0427040-mRNA-1
chr3_2 three_prime_UTR 77725975 77726297 77725975 ID=Msa0427040-mRNA-1:three_prime_utr;Parent=Msa0427040-mRNA-1
Gene Sequence

>Msa0427040

ATGGCTGAGATCGACACTTGTTCCAAGAACAAGGCAGGTTTGGAAATTTGCGAAACCAATTCGTATAATTCATCGCAATTACAAAGAACTAAACTTAAAGGGAAGGGAATTGCGTGCAAACGACGAAACCCTAGAGTCTCTGTTCGTCGCACAAGGGGTAATAATGTTGCAGCTATTGGGTTTCCTCTTGGAATGTCGGTCGCCGCTGTTATGGCTCAGGTGTTGTACAGAAGAGATGCAGCAGCTGAGAGTGTGTCTCCAGATCATCTTTCGTCGATGTGCACATCTGCGATCCAAGAATCTCTATCCAGTGTATTTGGAGACAAGCTAGATGGTTTGACAAGGAACTTTGAGCAATCTTTTGACAGCACTTTGAGTACTCTTCGATTAATTTATGAATCATCGGCTAGCAATGAAGGGAATAAATTGAATAATATGAGGTTGGAAATTCCAAGTTCTAAATTTATCAGAGGAGATTGCTCACGTGATATTGCTATAGAGGATGATCAACCAGGGCTACTATCACACGCACACGCCGAAATCGTAGATCAATCAATTAGTCGTGAAGAGGTTGGGGATAACTTCCACATGGAGTCAGTTACTCGTGATATTGCTTTGCGTGGGCAATCAAACCAAATGGTTTGTTTCGCTCCACCCTCTTCTGGAGCTTTAGCTAATAATCCAGTATTTGAGAAGTCTATTATGGAGCAATGCCGTTCTAATGACCTCAAGACTGTTGAACTTGGTCTTACAATGAAAAAAATGAAATTGAAAGAGACAGAATTGGCTCTCAGATATGATTTAAATGATCTGCAGAGATCCAAGTTAGCTGTGGATATATCAAAGACATCATTCAAAGCAGAAAAGTTTAAGACTCAGTTAGAAGATACAAGATATGGTGAACTGAATAAGAAGTGCATAGACTGTCTTATTGCTGGTCTGTTCATTATGTCATCCTCACTTTTTTATGGTGCTTATGTTTATAACTTTGAACGGATTAATGAAGCTGCTGGATCATGTACTCCAGAAGAGGCAAGAACCTTCCTACTGGTGGACTCCAAAGTCAGTGACCTGGTTAAATTCAAGTGTGCATGTTTTTTTTTGTCAAGTTCGAGTTGTGAGCCGAATGGTGTTTGGTTTCTTAATGATTATTGTTGTTGCGTATCTGCTCTTCCAACGGTCAGCAACATTGTCATCACAAACTATGCCAGTTACTTTCATCATATTGATGCTAGGAATCGGCTGTGGCTATTGTGGAACCATGTGTATAGACACACTGGGAGGAAGTGGTTACATTTGGCTCTTATATTGGGAGATTCTGTGTTTGGTGCATTTCTTATCTATATGCTGGACATCCGCTTTGTACGCAATCCTTCACGGACCAATCACAACACTGCAGACAAAGAAAGGGGATCCAATTGTCCAGTATTGGATTCGCCGGTTTCTTTTCTATGCTATTTTGCTTGTGGTTCTACCATTGTGTTGTGGTCTTCTGCCTTTTGCTAG

Protein sequence

>Msa0427040

MAEIDTCSKNKAGLEICETNSYNSSQLQRTKLKGKGIACKRRNPRVSVRRTRGNNVAAIGFPLGMSVAAVMAQVLYRRDAAAESVSPDHLSSMCTSAIQESLSSVFGDKLDGLTRNFEQSFDSTLSTLRLIYESSASNEGNKLNNMRLEIPSSKFIRGDCSRDIAIEDDQPGLLSHAHAEIVDQSISREEVGDNFHMESVTRDIALRGQSNQMVCFAPPSSGALANNPVFEKSIMEQCRSNDLKTVELGLTMKKMKLKETELALRYDLNDLQRSKLAVDISKTSFKAEKFKTQLEDTRYGELNKKCIDCLIAGLFIMSSSLFYGAYVYNFERINEAAGSCTPEEARTFLLVDSKVSDLVKFKCACFFLSSSSCEPNGVWFLNDYCCCVSALPTVSNIVITNYASYFHHIDARNRLWLLWNHVYRHTGRKWLHLALILGDSVFGAFLIYMLDIRFVRNPSRTNHNTADKERGSNCPVLDSPVSFLCYFACGSTIVLWSSAFC*