AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0926800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0926800 MtrunA17_Chr6g0486111 97.214 323 7 1 1 321 1 323 0.0 647
Msa0926800 MtrunA17_Chr8g0390301 62.079 356 80 16 1 321 1 336 1.14e-126 365
Msa0926800 MtrunA17_Chr2g0331431 48.986 345 122 12 14 320 1 329 4.85e-90 272
Msa0926800 MtrunA17_Chr2g0318971 44.318 176 72 2 146 321 288 437 2.16e-37 138
Msa0926800 MtrunA17_Chr3g0141841 41.451 193 74 4 142 318 283 452 2.91e-36 135
Msa0926800 MtrunA17_Chr2g0280631 46.341 164 59 4 156 318 276 411 3.14e-36 134
Msa0926800 MtrunA17_Chr8g0361501 44.578 166 66 2 156 321 305 444 1.07e-35 134
Msa0926800 MtrunA17_Chr1g0207771 51.034 145 56 3 171 315 141 270 7.53e-35 128
Msa0926800 MtrunA17_Chr1g0199091 43.949 157 59 4 165 318 399 529 4.64e-30 119
Msa0926800 MtrunA17_Chr4g0045561 37.158 183 79 3 132 314 4 150 7.57e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0926800 AT4G29100.1 46.229 411 127 16 1 321 1 407 2.85e-93 283
Msa0926800 AT2G20100.1 62.722 169 53 2 159 317 190 358 1.53e-62 202
Msa0926800 AT4G29100.2 42.651 347 112 14 1 264 1 343 6.76e-62 201
Msa0926800 AT2G20100.3 49.302 215 53 3 159 317 190 404 1.91e-53 180
Msa0926800 AT2G20100.4 63.303 109 37 1 159 264 190 298 4.29e-35 130
Msa0926800 AT2G20100.2 63.303 109 37 1 159 264 190 298 4.29e-35 130
Msa0926800 AT3G19500.1 48.649 148 48 3 171 318 140 259 1.93e-33 124
Msa0926800 AT3G20640.4 45.294 170 61 5 157 321 250 392 2.25e-33 127
Msa0926800 AT3G20640.1 45.294 170 61 5 157 321 312 454 3.86e-33 127
Msa0926800 AT1G27660.1 52.113 142 35 4 163 299 310 423 5.81e-32 124
Msa0926800 AT1G61660.7 46.104 154 58 4 169 321 264 393 5.24e-31 120
Msa0926800 AT1G61660.1 46.104 154 58 4 169 321 264 393 5.24e-31 120
Msa0926800 AT1G61660.3 46.104 154 58 4 169 321 261 390 5.72e-31 120
Msa0926800 AT2G31730.2 43.511 131 39 2 185 315 39 134 2.14e-26 102
Msa0926800 AT2G31730.1 43.511 131 39 2 185 315 39 134 2.14e-26 102
Msa0926800 AT4G21340.1 46.980 149 54 6 156 301 161 287 9.56e-26 104
Msa0926800 AT4G05170.1 34.322 236 112 8 64 297 94 288 7.28e-25 102
Msa0926800 AT4G05170.2 34.322 236 112 8 64 297 76 270 7.69e-25 102
Msa0926800 AT1G05710.6 40.909 132 41 2 185 315 29 124 1.50e-24 97.4
Msa0926800 AT1G05710.11 40.909 132 41 2 185 315 37 132 1.84e-24 97.4
Msa0926800 AT1G05710.5 40.909 132 41 2 185 315 37 132 1.84e-24 97.4
Msa0926800 AT1G05710.1 40.909 132 41 2 185 315 37 132 1.84e-24 97.4
Msa0926800 AT1G05710.14 40.909 132 41 2 185 315 37 132 1.84e-24 97.4
Msa0926800 AT1G05710.3 40.909 132 41 2 185 315 37 132 1.84e-24 97.4
Msa0926800 AT1G05710.4 40.909 132 41 2 185 315 37 132 1.84e-24 97.4
Msa0926800 AT1G05710.12 40.909 132 41 2 185 315 37 132 1.84e-24 97.4
Msa0926800 AT1G05710.9 44.361 133 57 5 185 315 29 146 2.16e-24 97.4
Msa0926800 AT1G05710.8 44.361 133 57 5 185 315 29 146 2.16e-24 97.4
Msa0926800 AT4G05170.3 44.615 130 53 2 170 297 40 152 2.71e-24 97.8
Msa0926800 AT1G05710.13 44.361 133 57 5 185 315 37 154 3.10e-24 97.4
Msa0926800 AT1G05710.2 44.361 133 57 5 185 315 37 154 3.10e-24 97.4
Msa0926800 AT1G05710.10 44.361 133 57 5 185 315 37 154 3.10e-24 97.4
Msa0926800 AT1G05710.7 44.361 133 57 5 185 315 37 154 3.10e-24 97.4
Msa0926800 AT4G05170.5 44.615 130 53 2 170 297 133 245 6.37e-24 99.0
Msa0926800 AT1G31050.1 41.772 158 54 5 171 320 305 432 1.21e-23 100
Msa0926800 AT1G31050.6 41.772 158 54 5 171 320 309 436 1.48e-23 100
Msa0926800 AT1G31050.7 42.038 157 53 5 171 319 305 431 1.52e-23 100
Msa0926800 AT4G05170.7 38.012 171 82 5 64 234 76 222 2.82e-21 91.3
Msa0926800 AT1G49830.2 42.623 122 41 2 195 316 133 225 3.52e-21 91.3
Msa0926800 AT1G49830.1 42.623 122 41 2 195 316 134 226 3.69e-21 91.3
Msa0926800 AT1G61660.6 62.162 74 28 0 169 242 264 337 4.59e-21 92.4
Msa0926800 AT1G61660.2 62.162 74 28 0 169 242 264 337 4.59e-21 92.4
Msa0926800 AT4G05170.6 38.182 165 78 5 64 228 76 216 2.93e-20 87.8
Msa0926800 AT4G05170.4 38.182 165 78 5 64 228 76 216 2.93e-20 87.8
Msa0926800 AT3G19500.2 61.765 68 26 0 171 238 140 207 5.21e-20 87.4
Msa0926800 AT3G20640.3 53.933 89 35 2 157 240 312 399 1.22e-19 89.4
Msa0926800 AT1G61660.4 33.533 167 74 6 156 321 241 371 2.89e-16 79.0
Msa0926800 AT3G20640.2 54.545 77 29 2 157 228 312 387 1.39e-15 77.4
Msa0926800 AT1G31050.2 53.030 66 30 1 166 230 300 365 1.01e-11 65.5
Msa0926800 AT1G31050.5 53.030 66 30 1 166 230 304 369 1.06e-11 65.5

Find 116 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAGTTGGTGCATAATT+AGG 0.122725 6_2:-70845548 None:intergenic
CCCCATTAATAATTTAAATT+TGG 0.201391 6_2:-70850096 None:intergenic
GACCAAATTTAAATTATTAA+TGG 0.219895 6_2:+70850094 Msa0926800:three_prime_UTR
TTACAGCTCTTAAATGAAAA+TGG 0.225554 6_2:+70849620 Msa0926800:intron
TTATTGATGTTCCACCAATT+AGG 0.248969 6_2:-70845464 None:intergenic
ACCAAATTTAAATTATTAAT+GGG 0.263545 6_2:+70850095 Msa0926800:three_prime_UTR
TGGTTATATCAGATTCCTTC+AGG 0.271543 6_2:+70848132 Msa0926800:CDS
CTACTCTTTAGGTCCTTCTT+TGG 0.274553 6_2:-70849973 None:intergenic
ATGACAATGGAGCTGATTAT+TGG 0.285895 6_2:+70850040 Msa0926800:CDS
TAATTGAAGGGGTGGAATTG+TGG 0.287660 6_2:+70846075 Msa0926800:intron
CCTGATCCATTGCTCAAGTA+TGG 0.288564 6_2:-70848336 None:intergenic
CATCAGCTTGTTTCCCCATT+TGG 0.289480 6_2:+70847358 Msa0926800:CDS
ATTACCTGACCAGGGTCTTC+AGG 0.299545 6_2:-70849431 None:intergenic
TGATGGCTAGTAACCCTAAT+TGG 0.323527 6_2:+70845450 Msa0926800:CDS
TATTGATGTTCCACCAATTA+GGG 0.326053 6_2:-70845463 None:intergenic
ATGAAGTTGGTGCATAATTA+GGG 0.328916 6_2:-70845547 None:intergenic
CTAGCCATCATTTGTTGAAC+TGG 0.334387 6_2:-70845437 None:intergenic
CAGGTTAGGAAGGAGAAGTT+AGG 0.364935 6_2:+70847316 Msa0926800:intron
CATATTGAGGTTGATTAAGT+AGG 0.370429 6_2:-70845246 None:intergenic
GAAAATAAAGGAGGAGGTTG+TGG 0.373125 6_2:-70845503 None:intergenic
TTAGAAGGAGATGAAAATAA+AGG 0.374150 6_2:-70845515 None:intergenic
TTGAACAACACCTCTATTCA+TGG 0.375089 6_2:-70845408 None:intergenic
CATATAGGTAATTCAATTCA+TGG 0.375580 6_2:+70850179 Msa0926800:three_prime_UTR
TCTGTCTTGTTAGAAGCTAT+TGG 0.377963 6_2:+70848112 Msa0926800:CDS
ATATTGAGGTTGATTAAGTA+GGG 0.385136 6_2:-70845245 None:intergenic
AATTAATTACCTTTCCAAAT+GGG 0.386503 6_2:-70847372 None:intergenic
AGTTGTTGACTCCATGGTTC+GGG 0.390425 6_2:-70845614 None:intergenic
AATTGAAGGGGTGGAATTGT+GGG 0.398017 6_2:+70846076 Msa0926800:intron
ACATCAACAAGAGAAGCATT+TGG 0.400442 6_2:-70846157 None:intergenic
TTAGGGTTGAGAAAGTTAGA+AGG 0.407564 6_2:-70845530 None:intergenic
CTGCCCTAGGAGGAGGCTTT+CGG 0.408459 6_2:+70850067 Msa0926800:CDS
TGACAATGGAGCTGATTATT+GGG 0.408868 6_2:+70850041 Msa0926800:CDS
TTTCTACAAAGACATTGTTT+AGG 0.411644 6_2:+70845280 Msa0926800:five_prime_UTR
TACAACTCAAACTACTTTCA+AGG 0.412851 6_2:+70847019 Msa0926800:CDS
ATTAATCTTAATTAGGTTCA+AGG 0.413424 6_2:+70849389 Msa0926800:intron
GACACAACCCTCTACTCTTT+AGG 0.414717 6_2:-70849984 None:intergenic
TAATTAATTACCTTTCCAAA+TGG 0.416474 6_2:-70847373 None:intergenic
GAGTTGTTGACTCCATGGTT+CGG 0.439817 6_2:-70845615 None:intergenic
TGGGCACCTGCCCTAGGAGG+AGG 0.440580 6_2:+70850060 Msa0926800:CDS
AAAGGAAGAAAAGATGAAGT+TGG 0.451016 6_2:-70845560 None:intergenic
AAAGGAGGAGGTTGTGGAGA+TGG 0.454745 6_2:-70845497 None:intergenic
AAGAAAGTGAGAAAAGAGAA+AGG 0.455130 6_2:+70845317 Msa0926800:five_prime_UTR
CATTAGCAAAATATTTAAGA+TGG 0.455439 6_2:+70850387 Msa0926800:three_prime_UTR
TCAGGAAATAGCTATGCATA+TGG 0.457920 6_2:+70846193 Msa0926800:CDS
AAAAGTAAAGCAATAAAGAA+AGG 0.461557 6_2:+70845124 Msa0926800:five_prime_UTR
TAGAGTTTGAATAATAATCA+TGG 0.466441 6_2:-70845187 None:intergenic
AAGTGTAACAGTTCTGCATC+TGG 0.468089 6_2:+70846963 Msa0926800:intron
AAATACAAGGCAACCACATT+CGG 0.472873 6_2:+70848359 Msa0926800:CDS
TTACCTGACCAGGGTCTTCA+GGG 0.475060 6_2:-70849430 None:intergenic
CTCTCCAGTTCAACAAATGA+TGG 0.475521 6_2:+70845433 Msa0926800:CDS
CCATACTTGAGCAATGGATC+AGG 0.481859 6_2:+70848336 Msa0926800:CDS
ATTAATTACCTTTCCAAATG+GGG 0.483813 6_2:-70847371 None:intergenic
GGTTATATCAGATTCCTTCA+GGG 0.485572 6_2:+70848133 Msa0926800:CDS
AAGAAGGACCTAAAGAGTAG+AGG 0.491449 6_2:+70849976 Msa0926800:CDS
TCTACCGAAAGCCTCCTCCT+AGG 0.499505 6_2:-70850071 None:intergenic
ATTCCCTGAAGACCCTGGTC+AGG 0.501966 6_2:+70849427 Msa0926800:CDS
TTTGTAATAAAATTCACAAA+GGG 0.503503 6_2:+70845368 Msa0926800:five_prime_UTR
TTCTCAATTTCAGGTTAGGA+AGG 0.504978 6_2:+70847306 Msa0926800:intron
GATTATTGGGCACCTGCCCT+AGG 0.505746 6_2:+70850054 Msa0926800:CDS
AGAAGGACCTAAAGAGTAGA+GGG 0.506332 6_2:+70849977 Msa0926800:CDS
ATGGGGAAACAAGCTGATGA+AGG 0.508848 6_2:-70847354 None:intergenic
ATTCCTTCAGGGTCAAATTG+AGG 0.512155 6_2:+70848144 Msa0926800:CDS
CAACACCTCTATTCATGGTA+TGG 0.512299 6_2:-70845403 None:intergenic
AGCTTACCATACTTGAGCAA+TGG 0.512974 6_2:+70848330 Msa0926800:CDS
GGAGCACCACACCCTTTGGT+TGG 0.517651 6_2:-70845222 None:intergenic
ATATTAATTCTTACCGAATG+TGG 0.522777 6_2:-70848372 None:intergenic
GGAGATGAAAATAAAGGAGG+AGG 0.522950 6_2:-70845509 None:intergenic
ATAAGCCATACCATGAATAG+AGG 0.526941 6_2:+70845398 Msa0926800:exon
AGATAGTAAACAAAGACAAA+AGG 0.529273 6_2:+70845153 Msa0926800:five_prime_UTR
ATATATTCTAGCATGCATAT+AGG 0.531269 6_2:+70850164 Msa0926800:three_prime_UTR
ATCCAAAGGATTACCTGACC+AGG 0.531475 6_2:-70849440 None:intergenic
GCATCATGAGCAATCAGCCT+TGG 0.535614 6_2:-70850246 None:intergenic
TACATGAGTTGTTGACTCCA+TGG 0.541593 6_2:-70845620 None:intergenic
TTGAAGGGGTGGAATTGTGG+GGG 0.542338 6_2:+70846078 Msa0926800:intron
TTCTCAAGAAGAACCAAAGA+AGG 0.544458 6_2:+70849960 Msa0926800:CDS
CGAAAGCCTCCTCCTAGGGC+AGG 0.544571 6_2:-70850066 None:intergenic
TTGCAAATACTAGTTCATCA+TGG 0.545751 6_2:-70850309 None:intergenic
CTACCGAAAGCCTCCTCCTA+GGG 0.545954 6_2:-70850070 None:intergenic
CATGAGCAATCAGCCTTGGT+AGG 0.546191 6_2:-70850242 None:intergenic
TAGCAAAATATTTAAGATGG+TGG 0.548569 6_2:+70850390 Msa0926800:three_prime_UTR
AACTTTGAGAGGTCATATTG+AGG 0.549294 6_2:-70845259 None:intergenic
GAAGAGGAAAGCAGCTGAAG+AGG 0.551673 6_2:+70849646 Msa0926800:CDS
TGTCATGTACACTACAAGTT+GGG 0.555398 6_2:+70850016 Msa0926800:CDS
GAAGGAGATGAAAATAAAGG+AGG 0.562051 6_2:-70845512 None:intergenic
GAGTTTCAATAACAACATGT+TGG 0.569592 6_2:+70846249 Msa0926800:CDS
GCTTGTTTCCCCATTTGGAA+AGG 0.570374 6_2:+70847363 Msa0926800:CDS
ATCAAGAGCTTCCCGAACCA+TGG 0.573656 6_2:+70845603 Msa0926800:CDS
CCAAATTTAAATTATTAATG+GGG 0.575170 6_2:+70850096 Msa0926800:three_prime_UTR
GTAACAGTTCTGCATCTGGT+GGG 0.576642 6_2:+70846967 Msa0926800:CDS
GTGTCATGTACACTACAAGT+TGG 0.577685 6_2:+70850015 Msa0926800:CDS
TGTTTATTCCCTGAAGACCC+TGG 0.579599 6_2:+70849422 Msa0926800:CDS
TGTAACAGTTCTGCATCTGG+TGG 0.591294 6_2:+70846966 Msa0926800:CDS
TAAATGAAAATGGCTTGAAG+AGG 0.592480 6_2:+70849630 Msa0926800:CDS
TGGCTAGTAACCCTAATTGG+TGG 0.593806 6_2:+70845453 Msa0926800:CDS
GGAGGAGGTTGTGGAGATGG+TGG 0.593961 6_2:-70845494 None:intergenic
TAACAGTTCTGCATCTGGTG+GGG 0.597084 6_2:+70846968 Msa0926800:CDS
TATTGAGGTTGATTAAGTAG+GGG 0.601230 6_2:-70845244 None:intergenic
TCACCTCAATTTGACCCTGA+AGG 0.601592 6_2:-70848147 None:intergenic
ATAAGTCCAACCAAAGGGTG+TGG 0.604349 6_2:+70845216 Msa0926800:five_prime_UTR
GATGTTAAACAAGAAAACTC+AGG 0.605746 6_2:+70846175 Msa0926800:CDS
ATTGAGGTTGATTAAGTAGG+GGG 0.607577 6_2:-70845243 None:intergenic
ACTTGTAGTGTACATGACAC+TGG 0.608411 6_2:-70850012 None:intergenic
TGGGGAAACAAGCTGATGAA+GGG 0.608733 6_2:-70847353 None:intergenic
ATTGAAGGGGTGGAATTGTG+GGG 0.614393 6_2:+70846077 Msa0926800:intron
TATTGGGCACCTGCCCTAGG+AGG 0.619502 6_2:+70850057 Msa0926800:CDS
AATAGCTATGCATATGGACA+TGG 0.627229 6_2:+70846199 Msa0926800:CDS
ACCTCAGAAGATCGATCTAG+TGG 0.628411 6_2:-70846313 None:intergenic
CTACAAGTTGGGAATGACAA+TGG 0.634609 6_2:+70850027 Msa0926800:CDS
ACCACTAGATCGATCTTCTG+AGG 0.634967 6_2:+70846312 Msa0926800:CDS
GTCTTTGTAGAAACTTTGAG+AGG 0.647479 6_2:-70845270 None:intergenic
TCAGAAGATCGATCTAGTGG+TGG 0.660060 6_2:-70846310 None:intergenic
TCCAAAGGATTACCTGACCA+GGG 0.669498 6_2:-70849439 None:intergenic
ACAATAGTAATATAGATGTG+AGG 0.676915 6_2:+70846284 Msa0926800:CDS
GGTGGAACATCAATAACATG+AGG 0.683914 6_2:+70845471 Msa0926800:CDS
GCAATGGATCAGGAAATACA+AGG 0.690176 6_2:+70848346 Msa0926800:CDS
AATAGCTTCTAACAAGACAG+AGG 0.708748 6_2:-70848110 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCACTATTTTTTTTTTA+AGG + chr6_2:70845661-70845680 Msa0926800:intron 10.0%
!!! AATCACTATTTTTTTTTTAA+GGG + chr6_2:70845662-70845681 Msa0926800:intron 10.0%
!!! AAAATCTAATTAATTGTTTT+TGG + chr6_2:70846051-70846070 Msa0926800:intron 10.0%
!! ATTGCATATATAATTTATAT+TGG - chr6_2:70846576-70846595 None:intergenic 10.0%
!!! TATGATTTTAAACTAAAAAA+AGG - chr6_2:70846621-70846640 None:intergenic 10.0%
!!! TTTTTTAGTTTAAAATCATA+AGG + chr6_2:70846621-70846640 Msa0926800:intron 10.0%
!!! TTTTTAGTTTAAAATCATAA+GGG + chr6_2:70846622-70846641 Msa0926800:intron 10.0%
!!! GTAAATTACTTTATTATTTT+TGG + chr6_2:70846887-70846906 Msa0926800:intron 10.0%
!! AAAATTGTTATAAATTAAAG+TGG + chr6_2:70847490-70847509 Msa0926800:intron 10.0%
!!! TTTTTTTTTTTTGATGAAAT+TGG - chr6_2:70848498-70848517 None:intergenic 10.0%
!!! TTTTATAAAAAAGAATTAGA+GGG - chr6_2:70848818-70848837 None:intergenic 10.0%
!! GTAATTTATTAATCTTAATT+AGG + chr6_2:70849382-70849401 Msa0926800:intron 10.0%
!! ACCAAATTTAAATTATTAAT+GGG + chr6_2:70850095-70850114 Msa0926800:three_prime_UTR 10.0%
!!! TTTTGTAATAAAATTCACAA+AGG + chr6_2:70845367-70845386 Msa0926800:five_prime_UTR 15.0%
!! TTTGTAATAAAATTCACAAA+GGG + chr6_2:70845368-70845387 Msa0926800:five_prime_UTR 15.0%
!! TTAATTAAAGGTGATAATAT+TGG - chr6_2:70846491-70846510 None:intergenic 15.0%
!! ATTATCACCTTTAATTAATT+TGG + chr6_2:70846493-70846512 Msa0926800:intron 15.0%
!!! TTTTAAACTAAAAAAAGGTT+GGG - chr6_2:70846616-70846635 None:intergenic 15.0%
!!! ATTTTAAACTAAAAAAAGGT+TGG - chr6_2:70846617-70846636 None:intergenic 15.0%
!!! TTTTAGTTTAAAATCATAAG+GGG + chr6_2:70846623-70846642 Msa0926800:intron 15.0%
!!! CTTTTATAAAAAAGAATTAG+AGG - chr6_2:70848819-70848838 None:intergenic 15.0%
!! ATATATAAATCATGAAAACA+AGG + chr6_2:70849518-70849537 Msa0926800:intron 15.0%
!! TATATAAATCATGAAAACAA+GGG + chr6_2:70849519-70849538 Msa0926800:intron 15.0%
!!! AAGACAAAATAATAGTTTTT+TGG - chr6_2:70849781-70849800 None:intergenic 15.0%
!! GACCAAATTTAAATTATTAA+TGG + chr6_2:70850094-70850113 Msa0926800:three_prime_UTR 15.0%
!! CCAAATTTAAATTATTAATG+GGG + chr6_2:70850096-70850115 Msa0926800:three_prime_UTR 15.0%
!! AAAAGTAAAGCAATAAAGAA+AGG + chr6_2:70845124-70845143 Msa0926800:five_prime_UTR 20.0%
!! TAGAGTTTGAATAATAATCA+TGG - chr6_2:70845190-70845209 None:intergenic 20.0%
!! AATCACTACTAAATTAGTAA+GGG + chr6_2:70845690-70845709 Msa0926800:intron 20.0%
!!! TTAGCATTTGATTTTGAAAT+TGG - chr6_2:70846126-70846145 None:intergenic 20.0%
!! ATTATATATGCAATCTCAAA+AGG + chr6_2:70846582-70846601 Msa0926800:intron 20.0%
!! ACATTAGTTCATATGAAATA+TGG + chr6_2:70846848-70846867 Msa0926800:intron 20.0%
!!! TTGTAGAATGAAAGAAATTT+TGG - chr6_2:70846945-70846964 None:intergenic 20.0%
!!! CTATATTTTGTTGTTGTATT+AGG - chr6_2:70847237-70847256 None:intergenic 20.0%
!! AATTAATTACCTTTCCAAAT+GGG - chr6_2:70847375-70847394 None:intergenic 20.0%
!! TAATTAATTACCTTTCCAAA+TGG - chr6_2:70847376-70847395 None:intergenic 20.0%
!! CTGTATAAAGAAAATTAACT+AGG - chr6_2:70847401-70847420 None:intergenic 20.0%
!!! TTTTTTTTTGTTCCCTATTT+TGG - chr6_2:70847461-70847480 None:intergenic 20.0%
!!! AATTTTTTCTCTAATAGTGA+TGG - chr6_2:70847596-70847615 None:intergenic 20.0%
!! TGTAGTAGCAAATAAATTAA+AGG - chr6_2:70847834-70847853 None:intergenic 20.0%
!! ATTGCATTATATATAGAAAG+TGG + chr6_2:70848033-70848052 Msa0926800:intron 20.0%
!! TTTCATTTAAGAATTGAACT+TGG - chr6_2:70848565-70848584 None:intergenic 20.0%
!! GAATCAAAGAATTGAATAAT+TGG - chr6_2:70848701-70848720 None:intergenic 20.0%
!!! TTATTTTTGATATATTGTCG+AGG - chr6_2:70848960-70848979 None:intergenic 20.0%
!!! AATAATGCTTATTTTTACGA+AGG - chr6_2:70849195-70849214 None:intergenic 20.0%
!! ATTAATCTTAATTAGGTTCA+AGG + chr6_2:70849389-70849408 Msa0926800:intron 20.0%
!! CATTTCTCTTTAGTTATTAA+TGG - chr6_2:70849466-70849485 None:intergenic 20.0%
!! TATATTAAATCTGATAAAGC+TGG - chr6_2:70849492-70849511 None:intergenic 20.0%
!! ATATAAATCATGAAAACAAG+GGG + chr6_2:70849520-70849539 Msa0926800:intron 20.0%
!!! TTTTGGTCTCTAATTTTTAT+TGG - chr6_2:70849764-70849783 None:intergenic 20.0%
!!! TCATGTTGGTAATAATAATT+AGG + chr6_2:70849936-70849955 Msa0926800:intron 20.0%
!! CCCCATTAATAATTTAAATT+TGG - chr6_2:70850099-70850118 None:intergenic 20.0%
!!! AAAAAGTAGATTGGTAATTA+GGG - chr6_2:70850336-70850355 None:intergenic 20.0%
!!! AAAAAAGTAGATTGGTAATT+AGG - chr6_2:70850337-70850356 None:intergenic 20.0%
!! TTCACATTAAAAAAGTAGAT+TGG - chr6_2:70850345-70850364 None:intergenic 20.0%
!! CATTAGCAAAATATTTAAGA+TGG + chr6_2:70850387-70850406 Msa0926800:three_prime_UTR 20.0%
! AGATAGTAAACAAAGACAAA+AGG + chr6_2:70845153-70845172 Msa0926800:five_prime_UTR 25.0%
!! ATATTGAGGTTGATTAAGTA+GGG - chr6_2:70845248-70845267 None:intergenic 25.0%
! TTTCTACAAAGACATTGTTT+AGG + chr6_2:70845280-70845299 Msa0926800:five_prime_UTR 25.0%
! TTAGAAGGAGATGAAAATAA+AGG - chr6_2:70845518-70845537 None:intergenic 25.0%
! CAATCACTACTAAATTAGTA+AGG + chr6_2:70845689-70845708 Msa0926800:intron 25.0%
! ATCACTACTAAATTAGTAAG+GGG + chr6_2:70845691-70845710 Msa0926800:intron 25.0%
! ATGCATAATATTCACCATAA+TGG - chr6_2:70845879-70845898 None:intergenic 25.0%
! AAAATTCAAACGTATGTGTT+TGG + chr6_2:70846012-70846031 Msa0926800:intron 25.0%
!!! AATTGTTTTTGGCTAATTGA+AGG + chr6_2:70846062-70846081 Msa0926800:intron 25.0%
!!! ATTGTTTTTGGCTAATTGAA+GGG + chr6_2:70846063-70846082 Msa0926800:intron 25.0%
! ACAATAGTAATATAGATGTG+AGG + chr6_2:70846284-70846303 Msa0926800:CDS 25.0%
!!! TTCATGTACCTTTTTTTTCT+TGG + chr6_2:70846422-70846441 Msa0926800:intron 25.0%
!! TCAAATTTTTCATAGCAACA+CGG + chr6_2:70846792-70846811 Msa0926800:intron 25.0%
! GAATAATTGCAATTGAGAAT+TGG - chr6_2:70847151-70847170 None:intergenic 25.0%
! ATTAATTACCTTTCCAAATG+GGG - chr6_2:70847374-70847393 None:intergenic 25.0%
! AAATTAAAGGATCGTGTTAA+CGG - chr6_2:70847821-70847840 None:intergenic 25.0%
!!! TTTTCTGCATGATATTTTAG+AGG + chr6_2:70847988-70848007 Msa0926800:intron 25.0%
!!! TTTCTGCATGATATTTTAGA+GGG + chr6_2:70847989-70848008 Msa0926800:intron 25.0%
! AAATTAAGGCAAATGTGAAA+TGG - chr6_2:70848236-70848255 None:intergenic 25.0%
! AACTTGAAGAACACAAATTA+AGG - chr6_2:70848250-70848269 None:intergenic 25.0%
! AATTCCAAAGTTAGGAAAAA+AGG - chr6_2:70848298-70848317 None:intergenic 25.0%
! ATATTAATTCTTACCGAATG+TGG - chr6_2:70848375-70848394 None:intergenic 25.0%
! ACATTCGGTAAGAATTAATA+TGG + chr6_2:70848374-70848393 Msa0926800:intron 25.0%
!! AGAACTATGACAATTTTTGT+GGG - chr6_2:70848421-70848440 None:intergenic 25.0%
!! AAGAACTATGACAATTTTTG+TGG - chr6_2:70848422-70848441 None:intergenic 25.0%
! AATGAATAATTGAACTCAAG+TGG + chr6_2:70848468-70848487 Msa0926800:intron 25.0%
! CATTAAATGACAACTCATTT+AGG + chr6_2:70848534-70848553 Msa0926800:intron 25.0%
! ATACTTATATTGTTCATCAG+AGG + chr6_2:70848764-70848783 Msa0926800:intron 25.0%
! TACTTATATTGTTCATCAGA+GGG + chr6_2:70848765-70848784 Msa0926800:intron 25.0%
! AAAGATAAGTGCCAAATATT+AGG + chr6_2:70849023-70849042 Msa0926800:intron 25.0%
! ACATGTTGTGTTAAAATCAA+GGG + chr6_2:70849136-70849155 Msa0926800:intron 25.0%
!! TGCAAAAATGTGTTAGTTTA+TGG + chr6_2:70849328-70849347 Msa0926800:intron 25.0%
!! TTAGTTATTAATGGATCCAA+AGG - chr6_2:70849457-70849476 None:intergenic 25.0%
! TTACAGCTCTTAAATGAAAA+TGG + chr6_2:70849620-70849639 Msa0926800:intron 25.0%
!!! TCTTATTTGTGTTTTCATGT+TGG + chr6_2:70849922-70849941 Msa0926800:intron 25.0%
! ATATATTCTAGCATGCATAT+AGG + chr6_2:70850164-70850183 Msa0926800:three_prime_UTR 25.0%
! CATATAGGTAATTCAATTCA+TGG + chr6_2:70850179-70850198 Msa0926800:three_prime_UTR 25.0%
!! TAGCAAAATATTTAAGATGG+TGG + chr6_2:70850390-70850409 Msa0926800:three_prime_UTR 25.0%
TCAAAAATAAGTCCAACCAA+AGG + chr6_2:70845210-70845229 Msa0926800:five_prime_UTR 30.0%
CAAAAATAAGTCCAACCAAA+GGG + chr6_2:70845211-70845230 Msa0926800:five_prime_UTR 30.0%
! TATTGAGGTTGATTAAGTAG+GGG - chr6_2:70845247-70845266 None:intergenic 30.0%
! CATATTGAGGTTGATTAAGT+AGG - chr6_2:70845249-70845268 None:intergenic 30.0%
AAGAAAGTGAGAAAAGAGAA+AGG + chr6_2:70845317-70845336 Msa0926800:five_prime_UTR 30.0%
TATTGATGTTCCACCAATTA+GGG - chr6_2:70845466-70845485 None:intergenic 30.0%
TTATTGATGTTCCACCAATT+AGG - chr6_2:70845467-70845486 None:intergenic 30.0%
!! ATGAAGTTGGTGCATAATTA+GGG - chr6_2:70845550-70845569 None:intergenic 30.0%
AAAGGAAGAAAAGATGAAGT+TGG - chr6_2:70845563-70845582 None:intergenic 30.0%
! CTTTTCTTCCTTTTTCTTCA+TGG + chr6_2:70845570-70845589 Msa0926800:CDS 30.0%
! TTTTCATGCCATGAAGAAAA+AGG - chr6_2:70845581-70845600 None:intergenic 30.0%
TTAGTGACAAGAGATTTAGA+GGG + chr6_2:70845774-70845793 Msa0926800:intron 30.0%
! GACTTGTTCTATAACCATTA+TGG + chr6_2:70845862-70845881 Msa0926800:intron 30.0%
ACGTATGTGTTTGGTTAATT+AGG + chr6_2:70846021-70846040 Msa0926800:intron 30.0%
ATGTGTTTGGTTAATTAGGA+AGG + chr6_2:70846025-70846044 Msa0926800:intron 30.0%
!!! TTGTTTTTGGCTAATTGAAG+GGG + chr6_2:70846064-70846083 Msa0926800:intron 30.0%
GATGTTAAACAAGAAAACTC+AGG + chr6_2:70846175-70846194 Msa0926800:CDS 30.0%
GAGTTTCAATAACAACATGT+TGG + chr6_2:70846249-70846268 Msa0926800:CDS 30.0%
ATTCATAAAAAGTCTAGCCA+TGG - chr6_2:70846403-70846422 None:intergenic 30.0%
CTCATTGACCAAGAAAAAAA+AGG - chr6_2:70846433-70846452 None:intergenic 30.0%
GTAAAGTTTCTTGAAAAGTG+AGG - chr6_2:70846469-70846488 None:intergenic 30.0%
CTCTTGGCCAAATTAATTAA+AGG - chr6_2:70846503-70846522 None:intergenic 30.0%
GACAAAAATCTCTTCATGTA+TGG + chr6_2:70846676-70846695 Msa0926800:intron 30.0%
AAAAATCTCTTCATGTATGG+TGG + chr6_2:70846679-70846698 Msa0926800:intron 30.0%
TACAACTCAAACTACTTTCA+AGG + chr6_2:70847019-70847038 Msa0926800:CDS 30.0%
ACAAACATACAAATACCATG+TGG + chr6_2:70847097-70847116 Msa0926800:intron 30.0%
CAAACATACAAATACCATGT+GGG + chr6_2:70847098-70847117 Msa0926800:intron 30.0%
AAACATACAAATACCATGTG+GGG + chr6_2:70847099-70847118 Msa0926800:intron 30.0%
AAGATATCATGAAAACGTGT+AGG - chr6_2:70847285-70847304 None:intergenic 30.0%
GATATCTTGTTCTCAATTTC+AGG + chr6_2:70847297-70847316 Msa0926800:intron 30.0%
!! TTCCCTATTTTGGATTTAGT+GGG - chr6_2:70847451-70847470 None:intergenic 30.0%
AATTAAAGGATCGTGTTAAC+GGG - chr6_2:70847820-70847839 None:intergenic 30.0%
! TTTATTTGCTACTACATTCG+AGG + chr6_2:70847838-70847857 Msa0926800:intron 30.0%
!! TTCTGCATGATATTTTAGAG+GGG + chr6_2:70847990-70848009 Msa0926800:intron 30.0%
ATATATAGAAAGTGGTGACT+AGG + chr6_2:70848041-70848060 Msa0926800:intron 30.0%
!!! TCATCCTTTTTTCCTAACTT+TGG + chr6_2:70848291-70848310 Msa0926800:intron 30.0%
! GAACTATGACAATTTTTGTG+GGG - chr6_2:70848420-70848439 None:intergenic 30.0%
TAAGTAAAGTCAATCGAAAC+TGG - chr6_2:70848588-70848607 None:intergenic 30.0%
ACTTTAGATTACCAGAAAAC+TGG + chr6_2:70848620-70848639 Msa0926800:intron 30.0%
! GTGTTAATATTCCAGTTTTC+TGG - chr6_2:70848634-70848653 None:intergenic 30.0%
TATATTGTCGAGGATATTAG+AGG - chr6_2:70848950-70848969 None:intergenic 30.0%
TAAGTGCCAAATATTAGGAA+AGG + chr6_2:70849028-70849047 Msa0926800:intron 30.0%
CACATGTTGTGTTAAAATCA+AGG + chr6_2:70849135-70849154 Msa0926800:intron 30.0%
CATGTTGTGTTAAAATCAAG+GGG + chr6_2:70849137-70849156 Msa0926800:intron 30.0%
ATTTGTTTCGTGTGTTTCTT+TGG + chr6_2:70849164-70849183 Msa0926800:intron 30.0%
!!! TGCTTATTTTTACGAAGGTA+TGG - chr6_2:70849190-70849209 None:intergenic 30.0%
TAAATGAAAATGGCTTGAAG+AGG + chr6_2:70849630-70849649 Msa0926800:CDS 30.0%
TTGCTGATGAAAATTAGACT+TGG - chr6_2:70849847-70849866 None:intergenic 30.0%
! ATCTAGCACACATTTTATTC+AGG - chr6_2:70850286-70850305 None:intergenic 30.0%
TTGCAAATACTAGTTCATCA+TGG - chr6_2:70850312-70850331 None:intergenic 30.0%
! ATTGAGGTTGATTAAGTAGG+GGG - chr6_2:70845246-70845265 None:intergenic 35.0%
! AACTTTGAGAGGTCATATTG+AGG - chr6_2:70845262-70845281 None:intergenic 35.0%
GTCTTTGTAGAAACTTTGAG+AGG - chr6_2:70845273-70845292 None:intergenic 35.0%
ATAAGCCATACCATGAATAG+AGG + chr6_2:70845398-70845417 Msa0926800:exon 35.0%
TTGAACAACACCTCTATTCA+TGG - chr6_2:70845411-70845430 None:intergenic 35.0%
GAAGGAGATGAAAATAAAGG+AGG - chr6_2:70845515-70845534 None:intergenic 35.0%
TTAGGGTTGAGAAAGTTAGA+AGG - chr6_2:70845533-70845552 None:intergenic 35.0%
!! GATGAAGTTGGTGCATAATT+AGG - chr6_2:70845551-70845570 None:intergenic 35.0%
GTTAGTGACAAGAGATTTAG+AGG + chr6_2:70845773-70845792 Msa0926800:intron 35.0%
TAGTGACAAGAGATTTAGAG+GGG + chr6_2:70845775-70845794 Msa0926800:intron 35.0%
!! ACATCAACAAGAGAAGCATT+TGG - chr6_2:70846160-70846179 None:intergenic 35.0%
TCAGGAAATAGCTATGCATA+TGG + chr6_2:70846193-70846212 Msa0926800:CDS 35.0%
AATAGCTATGCATATGGACA+TGG + chr6_2:70846199-70846218 Msa0926800:CDS 35.0%
GCTTCTTCATTAAGAATCCA+TGG + chr6_2:70846383-70846402 Msa0926800:intron 35.0%
!! AACATGGAAGCTTTTTCTCT+TGG - chr6_2:70846519-70846538 None:intergenic 35.0%
AGGTATAATGCAAACTTCCA+TGG + chr6_2:70847039-70847058 Msa0926800:intron 35.0%
ATGAAAGAGAGTTAAGGAGT+TGG - chr6_2:70847073-70847092 None:intergenic 35.0%
GTATGCATGAAAGAGAGTTA+AGG - chr6_2:70847079-70847098 None:intergenic 35.0%
GGAGTAACTATTGTCTTTCT+TGG + chr6_2:70847120-70847139 Msa0926800:intron 35.0%
AAGTGCACATGCTAAAAAGT+TGG - chr6_2:70847260-70847279 None:intergenic 35.0%
!! CTTGTTCTCAATTTCAGGTT+AGG + chr6_2:70847302-70847321 Msa0926800:intron 35.0%
!! TTCTCAATTTCAGGTTAGGA+AGG + chr6_2:70847306-70847325 Msa0926800:intron 35.0%
ATCCCCACTAAATCCAAAAT+AGG + chr6_2:70847445-70847464 Msa0926800:intron 35.0%
TCCCCACTAAATCCAAAATA+GGG + chr6_2:70847446-70847465 Msa0926800:intron 35.0%
!! TCCCTATTTTGGATTTAGTG+GGG - chr6_2:70847450-70847469 None:intergenic 35.0%
!! GTTCCCTATTTTGGATTTAG+TGG - chr6_2:70847452-70847471 None:intergenic 35.0%
TTACTAGTGCTTACTGCTTA+GGG - chr6_2:70847562-70847581 None:intergenic 35.0%
TTTACTAGTGCTTACTGCTT+AGG - chr6_2:70847563-70847582 None:intergenic 35.0%
AAAATGATATCGAGTGCTCT+TGG + chr6_2:70847663-70847682 Msa0926800:intron 35.0%
AAATGATATCGAGTGCTCTT+GGG + chr6_2:70847664-70847683 Msa0926800:intron 35.0%
!! TCTGCATGATATTTTAGAGG+GGG + chr6_2:70847991-70848010 Msa0926800:intron 35.0%
!! ATATTTTAGAGGGGGGAAAA+AGG + chr6_2:70847999-70848018 Msa0926800:intron 35.0%
AATAGCTTCTAACAAGACAG+AGG - chr6_2:70848113-70848132 None:intergenic 35.0%
! TCTGTCTTGTTAGAAGCTAT+TGG + chr6_2:70848112-70848131 Msa0926800:CDS 35.0%
TGGTTATATCAGATTCCTTC+AGG + chr6_2:70848132-70848151 Msa0926800:CDS 35.0%
GGTTATATCAGATTCCTTCA+GGG + chr6_2:70848133-70848152 Msa0926800:CDS 35.0%
TGCTTGTGTTATGGTTGTTT+GGG - chr6_2:70848200-70848219 None:intergenic 35.0%
!! TCCTAACTTTGGAATTATGC+AGG + chr6_2:70848302-70848321 Msa0926800:intron 35.0%
AAATACAAGGCAACCACATT+CGG + chr6_2:70848359-70848378 Msa0926800:CDS 35.0%
!! ATTTTTGTGGGGTAAGTTGA+GGG - chr6_2:70848409-70848428 None:intergenic 35.0%
! AATTTTTGTGGGGTAAGTTG+AGG - chr6_2:70848410-70848429 None:intergenic 35.0%
! TGTTCATCAGAGGGTATAAA+TGG + chr6_2:70848774-70848793 Msa0926800:intron 35.0%
GGAGTTCCTTTCCTAATATT+TGG - chr6_2:70849037-70849056 None:intergenic 35.0%
CTGATGAAAATTAGACTTGG+AGG - chr6_2:70849844-70849863 None:intergenic 35.0%
TTCTCAAGAAGAACCAAAGA+AGG + chr6_2:70849960-70849979 Msa0926800:CDS 35.0%
TGTCATGTACACTACAAGTT+GGG + chr6_2:70850016-70850035 Msa0926800:CDS 35.0%
ATGACAATGGAGCTGATTAT+TGG + chr6_2:70850040-70850059 Msa0926800:CDS 35.0%
TGACAATGGAGCTGATTATT+GGG + chr6_2:70850041-70850060 Msa0926800:CDS 35.0%
CAACACCTCTATTCATGGTA+TGG - chr6_2:70845406-70845425 None:intergenic 40.0%
CTCTCCAGTTCAACAAATGA+TGG + chr6_2:70845433-70845452 Msa0926800:CDS 40.0%
! CTAGCCATCATTTGTTGAAC+TGG - chr6_2:70845440-70845459 None:intergenic 40.0%
TGATGGCTAGTAACCCTAAT+TGG + chr6_2:70845450-70845469 Msa0926800:CDS 40.0%
GGTGGAACATCAATAACATG+AGG + chr6_2:70845471-70845490 Msa0926800:CDS 40.0%
GAAAATAAAGGAGGAGGTTG+TGG - chr6_2:70845506-70845525 None:intergenic 40.0%
GGAGATGAAAATAAAGGAGG+AGG - chr6_2:70845512-70845531 None:intergenic 40.0%
!! TACATGAGTTGTTGACTCCA+TGG - chr6_2:70845623-70845642 None:intergenic 40.0%
TTGCAGCAAAATGGAGTAGT+GGG - chr6_2:70845930-70845949 None:intergenic 40.0%
ATTGCAGCAAAATGGAGTAG+TGG - chr6_2:70845931-70845950 None:intergenic 40.0%
!!! TTTTTGGCTAATTGAAGGGG+TGG + chr6_2:70846067-70846086 Msa0926800:intron 40.0%
TAATTGAAGGGGTGGAATTG+TGG + chr6_2:70846075-70846094 Msa0926800:intron 40.0%
AATTGAAGGGGTGGAATTGT+GGG + chr6_2:70846076-70846095 Msa0926800:intron 40.0%
AAGTGTAACAGTTCTGCATC+TGG + chr6_2:70846963-70846982 Msa0926800:intron 40.0%
TGGGGCAATGAAAAAAGCTA+GGG + chr6_2:70846986-70847005 Msa0926800:CDS 40.0%
AATGATATCGAGTGCTCTTG+GGG + chr6_2:70847665-70847684 Msa0926800:intron 40.0%
!! CTGCATGATATTTTAGAGGG+GGG + chr6_2:70847992-70848011 Msa0926800:intron 40.0%
CTAGGAATATGACAGTGGTA+TGG + chr6_2:70848059-70848078 Msa0926800:intron 40.0%
ATTCCTTCAGGGTCAAATTG+AGG + chr6_2:70848144-70848163 Msa0926800:CDS 40.0%
GTGCTTGTGTTATGGTTGTT+TGG - chr6_2:70848201-70848220 None:intergenic 40.0%
TTAACAGCGTGCTTGTGTTA+TGG - chr6_2:70848209-70848228 None:intergenic 40.0%
GCCTGCATAATTCCAAAGTT+AGG - chr6_2:70848306-70848325 None:intergenic 40.0%
AGCTTACCATACTTGAGCAA+TGG + chr6_2:70848330-70848349 Msa0926800:CDS 40.0%
GCAATGGATCAGGAAATACA+AGG + chr6_2:70848346-70848365 Msa0926800:CDS 40.0%
ATCCTTAAAGCGAAAAGCTC+AGG + chr6_2:70848893-70848912 Msa0926800:intron 40.0%
TCCTTAAAGCGAAAAGCTCA+GGG + chr6_2:70848894-70848913 Msa0926800:intron 40.0%
TCCACATGAATGCAAGAATG+TGG + chr6_2:70849054-70849073 Msa0926800:intron 40.0%
TCCACATTCTTGCATTCATG+TGG - chr6_2:70849058-70849077 None:intergenic 40.0%
CAACATGTGATTTCTGCCAA+AGG - chr6_2:70849124-70849143 None:intergenic 40.0%
CTACTCTTTAGGTCCTTCTT+TGG - chr6_2:70849976-70849995 None:intergenic 40.0%
AAGAAGGACCTAAAGAGTAG+AGG + chr6_2:70849976-70849995 Msa0926800:CDS 40.0%
AGAAGGACCTAAAGAGTAGA+GGG + chr6_2:70849977-70849996 Msa0926800:CDS 40.0%
ACTTGTAGTGTACATGACAC+TGG - chr6_2:70850015-70850034 None:intergenic 40.0%
GTGTCATGTACACTACAAGT+TGG + chr6_2:70850015-70850034 Msa0926800:CDS 40.0%
! CTACAAGTTGGGAATGACAA+TGG + chr6_2:70850027-70850046 Msa0926800:CDS 40.0%
ATCTGCTCAAAAACCTACCA+AGG + chr6_2:70850229-70850248 Msa0926800:three_prime_UTR 40.0%
ATAAGTCCAACCAAAGGGTG+TGG + chr6_2:70845216-70845235 Msa0926800:five_prime_UTR 45.0%
TGGCTAGTAACCCTAATTGG+TGG + chr6_2:70845453-70845472 Msa0926800:CDS 45.0%
!! AGTTGTTGACTCCATGGTTC+GGG - chr6_2:70845617-70845636 None:intergenic 45.0%
!! GAGTTGTTGACTCCATGGTT+CGG - chr6_2:70845618-70845637 None:intergenic 45.0%
CCAGCTCAATTGCAGCAAAA+TGG - chr6_2:70845939-70845958 None:intergenic 45.0%
! CCATTTTGCTGCAATTGAGC+TGG + chr6_2:70845936-70845955 Msa0926800:intron 45.0%
ATTGAAGGGGTGGAATTGTG+GGG + chr6_2:70846077-70846096 Msa0926800:intron 45.0%
TCAGAAGATCGATCTAGTGG+TGG - chr6_2:70846313-70846332 None:intergenic 45.0%
ACCACTAGATCGATCTTCTG+AGG + chr6_2:70846312-70846331 Msa0926800:CDS 45.0%
ACCTCAGAAGATCGATCTAG+TGG - chr6_2:70846316-70846335 None:intergenic 45.0%
! TGTATGGTGGAGCAAAAGCT+TGG + chr6_2:70846692-70846711 Msa0926800:intron 45.0%
TGTAACAGTTCTGCATCTGG+TGG + chr6_2:70846966-70846985 Msa0926800:CDS 45.0%
GTAACAGTTCTGCATCTGGT+GGG + chr6_2:70846967-70846986 Msa0926800:CDS 45.0%
TAACAGTTCTGCATCTGGTG+GGG + chr6_2:70846968-70846987 Msa0926800:CDS 45.0%
GTGGGGCAATGAAAAAAGCT+AGG + chr6_2:70846985-70847004 Msa0926800:CDS 45.0%
AGGAGTTGGAAGTTTCTCCA+TGG - chr6_2:70847059-70847078 None:intergenic 45.0%
GACAATAGTTACTCCCCACA+TGG - chr6_2:70847115-70847134 None:intergenic 45.0%
CAGGTTAGGAAGGAGAAGTT+AGG + chr6_2:70847316-70847335 Msa0926800:intron 45.0%
TGGGGAAACAAGCTGATGAA+GGG - chr6_2:70847356-70847375 None:intergenic 45.0%
ATGGGGAAACAAGCTGATGA+AGG - chr6_2:70847357-70847376 None:intergenic 45.0%
! CATCAGCTTGTTTCCCCATT+TGG + chr6_2:70847358-70847377 Msa0926800:CDS 45.0%
GCTTGTTTCCCCATTTGGAA+AGG + chr6_2:70847363-70847382 Msa0926800:CDS 45.0%
!! TGCTCTTGGGGCACTTTTTA+AGG + chr6_2:70847677-70847696 Msa0926800:intron 45.0%
!! GCTCTTGGGGCACTTTTTAA+GGG + chr6_2:70847678-70847697 Msa0926800:intron 45.0%
GGTGACTAGGAATATGACAG+TGG + chr6_2:70848054-70848073 Msa0926800:intron 45.0%
TCACCTCAATTTGACCCTGA+AGG - chr6_2:70848150-70848169 None:intergenic 45.0%
CCTGATCCATTGCTCAAGTA+TGG - chr6_2:70848339-70848358 None:intergenic 45.0%
CCATACTTGAGCAATGGATC+AGG + chr6_2:70848336-70848355 Msa0926800:CDS 45.0%
! ACCCTGAGCTTTTCGCTTTA+AGG - chr6_2:70848898-70848917 None:intergenic 45.0%
TGTTTATTCCCTGAAGACCC+TGG + chr6_2:70849422-70849441 Msa0926800:CDS 45.0%
TCCAAAGGATTACCTGACCA+GGG - chr6_2:70849442-70849461 None:intergenic 45.0%
ATCCAAAGGATTACCTGACC+AGG - chr6_2:70849443-70849462 None:intergenic 45.0%
GACACAACCCTCTACTCTTT+AGG - chr6_2:70849987-70850006 None:intergenic 45.0%
!!! TTATTAATTTTTCTATAATA+TGG + chr6_2:70845834-70845853 Msa0926800:intron 5.0%
!! TAATTAAATATTATAAAACA+TGG - chr6_2:70846535-70846554 None:intergenic 5.0%
AAAGGAGGAGGTTGTGGAGA+TGG - chr6_2:70845500-70845519 None:intergenic 50.0%
ATCAAGAGCTTCCCGAACCA+TGG + chr6_2:70845603-70845622 Msa0926800:CDS 50.0%
TTGAAGGGGTGGAATTGTGG+GGG + chr6_2:70846078-70846097 Msa0926800:intron 50.0%
GTGGGGGAGGAAGATAAGAT+TGG + chr6_2:70846094-70846113 Msa0926800:CDS 50.0%
TTACCTGACCAGGGTCTTCA+GGG - chr6_2:70849433-70849452 None:intergenic 50.0%
ATTACCTGACCAGGGTCTTC+AGG - chr6_2:70849434-70849453 None:intergenic 50.0%
ACCCTGGTCAGGTAATCCTT+TGG + chr6_2:70849438-70849457 Msa0926800:intron 50.0%
GAAGAGGAAAGCAGCTGAAG+AGG + chr6_2:70849646-70849665 Msa0926800:CDS 50.0%
CATGAGCAATCAGCCTTGGT+AGG - chr6_2:70850245-70850264 None:intergenic 50.0%
GCATCATGAGCAATCAGCCT+TGG - chr6_2:70850249-70850268 None:intergenic 50.0%
CAACACGGTGATCTGTGTCG+CGG + chr6_2:70846807-70846826 Msa0926800:intron 55.0%
ATTCCCTGAAGACCCTGGTC+AGG + chr6_2:70849427-70849446 Msa0926800:CDS 55.0%
GATTATTGGGCACCTGCCCT+AGG + chr6_2:70850054-70850073 Msa0926800:CDS 55.0%
CTACCGAAAGCCTCCTCCTA+GGG - chr6_2:70850073-70850092 None:intergenic 55.0%
TCTACCGAAAGCCTCCTCCT+AGG - chr6_2:70850074-70850093 None:intergenic 55.0%
! GGAGCACCACACCCTTTGGT+TGG - chr6_2:70845225-70845244 None:intergenic 60.0%
GGAGGAGGTTGTGGAGATGG+TGG - chr6_2:70845497-70845516 None:intergenic 60.0%
AAGGGGTGGAATTGTGGGGG+AGG + chr6_2:70846081-70846100 Msa0926800:intron 60.0%
TATTGGGCACCTGCCCTAGG+AGG + chr6_2:70850057-70850076 Msa0926800:CDS 60.0%
CTGCCCTAGGAGGAGGCTTT+CGG + chr6_2:70850067-70850086 Msa0926800:CDS 60.0%
!! AGGGGGAGCACCACACCCTT+TGG - chr6_2:70845229-70845248 None:intergenic 65.0%
CGAAAGCCTCCTCCTAGGGC+AGG - chr6_2:70850069-70850088 None:intergenic 65.0%
TGGGCACCTGCCCTAGGAGG+AGG + chr6_2:70850060-70850079 Msa0926800:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 70845108 70850469 70845108 ID=Msa0926800;Name=Msa0926800
chr6_2 mRNA 70845108 70850469 70845108 ID=Msa0926800-mRNA-1;Parent=Msa0926800;Name=Msa0926800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=302|1|1|1|0.88|0.8|10|356|321
chr6_2 exon 70845108 70845639 70845108 ID=Msa0926800-mRNA-1:exon:11650;Parent=Msa0926800-mRNA-1
chr6_2 exon 70846084 70846333 70846084 ID=Msa0926800-mRNA-1:exon:11651;Parent=Msa0926800-mRNA-1
chr6_2 exon 70846966 70847040 70846966 ID=Msa0926800-mRNA-1:exon:11652;Parent=Msa0926800-mRNA-1
chr6_2 exon 70847319 70847384 70847319 ID=Msa0926800-mRNA-1:exon:11653;Parent=Msa0926800-mRNA-1
chr6_2 exon 70848100 70848165 70848100 ID=Msa0926800-mRNA-1:exon:11654;Parent=Msa0926800-mRNA-1
chr6_2 exon 70848324 70848380 70848324 ID=Msa0926800-mRNA-1:exon:11655;Parent=Msa0926800-mRNA-1
chr6_2 exon 70849404 70849448 70849404 ID=Msa0926800-mRNA-1:exon:11656;Parent=Msa0926800-mRNA-1
chr6_2 exon 70849626 70849667 70849626 ID=Msa0926800-mRNA-1:exon:11657;Parent=Msa0926800-mRNA-1
chr6_2 exon 70849958 70850341 70849958 ID=Msa0926800-mRNA-1:exon:11658;Parent=Msa0926800-mRNA-1
chr6_2 exon 70850363 70850469 70850363 ID=Msa0926800-mRNA-1:exon:11659;Parent=Msa0926800-mRNA-1
chr6_2 five_prime_UTR 70845108 70845409 70845108 ID=Msa0926800-mRNA-1:five_prime_utr;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70845410 70845639 70845410 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70846084 70846333 70846084 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70846966 70847040 70846966 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70847319 70847384 70847319 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70848100 70848165 70848100 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70848324 70848380 70848324 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70849404 70849448 70849404 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70849626 70849667 70849626 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 CDS 70849958 70850092 70849958 ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2 three_prime_UTR 70850093 70850341 70850093 ID=Msa0926800-mRNA-1:three_prime_utr;Parent=Msa0926800-mRNA-1
chr6_2 three_prime_UTR 70850363 70850469 70850363 ID=Msa0926800-mRNA-1:three_prime_utr;Parent=Msa0926800-mRNA-1
Gene Sequence

>Msa0926800

ATGAATAGAGGTGTTGTTCAAAGCTCTCCAGTTCAACAAATGATGGCTAGTAACCCTAATTGGTGGAACATCAATAACATGAGGCCACCATCTCCACAACCTCCTCCTTTATTTTCATCTCCTTCTAACTTTCTCAACCCTAATTATGCACCAACTTCATCTTTTCTTCCTTTTTCTTCATGGCATGAAAATCATCAAGAGCTTCCCGAACCATGGAGTCAACAACTCATGGGTGGAATTGTGGGGGAGGAAGATAAGATTGGTATGAGCCAATTTCAAAATCAAATGCTAATAAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAACTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTGACGAGTTTCAATAACAACATGTTGGATTTCACTAACAACAATAGTAATATAGATGTGAGGCATCCACCACTAGATCGATCTTCTGAGTGTAACAGTTCTGCATCTGGTGGGGCAATGAAAAAAGCTAGGGTTCAACAATCTACAACTCAAACTACTTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAGCTTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGGGTCAAATTGAGGCTCTTAGCTTACCATACTTGAGCAATGGATCAGGAAATACAAGGCAACCACATTCGGTTCAAGGAGAGAATAATTGTTTATTCCCTGAAGACCCTGGTCAGCTCTTAAATGAAAATGGCTTGAAGAGGAAAGCAGCTGAAGAGGTTTCTCAAGAAGAACCAAAGAAGGACCTAAAGAGTAGAGGGTTGTGTCTTGTTCCAGTGTCATGTACACTACAAGTTGGGAATGACAATGGAGCTGATTATTGGGCACCTGCCCTAGGAGGAGGCTTTCGGTAG

Protein sequence

>Msa0926800

MNRGVVQSSPVQQMMASNPNWWNINNMRPPSPQPPPLFSSPSNFLNPNYAPTSSFLPFSSWHENHQELPEPWSQQLMGGIVGEEDKIGMSQFQNQMLISQAPNASLVDVKQENSGNSYAYGHGNEELNSCVTSFNNNMLDFTNNNSNIDVRHPPLDRSSECNSSASGGAMKKARVQQSTTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSLPYLSNGSGNTRQPHSVQGENNCLFPEDPGQLLNENGLKRKAAEEVSQEEPKKDLKSRGLCLVPVSCTLQVGNDNGADYWAPALGGGFR*