AlfalfaGEDB | Msa0926800

M. sativa cultivar zhongmu-4 / Msa0926800

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0926800	XP_013453115.1	97.214	323	7	1	1	321	1	323	0.0	647

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0926800	sp\|Q8S3D1\|BH068_ARATH	46.229	411	127	16	1	321	1	407	2.80e-92	283

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0926800	0.813443	2.552735e-51	-8.615850e-47
Msa0007080	Msa0926800	0.800230	1.588908e-48	-8.615850e-47
Msa0008850	Msa0926800	0.836563	8.694134e-57	-8.615850e-47
Msa0011720	Msa0926800	0.805918	1.058287e-49	-8.615850e-47
Msa0020630	Msa0926800	0.809863	1.533142e-50	-8.615850e-47
Msa0030030	Msa0926800	0.803734	3.026947e-49	-8.615850e-47
Msa0038310	Msa0926800	0.833512	5.112202e-56	-8.615850e-47
Msa0047470	Msa0926800	0.803782	2.957909e-49	-8.615850e-47
Msa0050730	Msa0926800	0.815195	1.046643e-51	-8.615850e-47
Msa0050760	Msa0926800	0.819627	1.051486e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0926800	MtrunA17_Chr6g0486111	97.214	323	7	1	1	321	1	323	0.0	647
Msa0926800	MtrunA17_Chr8g0390301	62.079	356	80	16	1	321	1	336	1.14e-126	365
Msa0926800	MtrunA17_Chr2g0331431	48.986	345	122	12	14	320	1	329	4.85e-90	272
Msa0926800	MtrunA17_Chr2g0318971	44.318	176	72	2	146	321	288	437	2.16e-37	138
Msa0926800	MtrunA17_Chr3g0141841	41.451	193	74	4	142	318	283	452	2.91e-36	135
Msa0926800	MtrunA17_Chr2g0280631	46.341	164	59	4	156	318	276	411	3.14e-36	134
Msa0926800	MtrunA17_Chr8g0361501	44.578	166	66	2	156	321	305	444	1.07e-35	134
Msa0926800	MtrunA17_Chr1g0207771	51.034	145	56	3	171	315	141	270	7.53e-35	128
Msa0926800	MtrunA17_Chr1g0199091	43.949	157	59	4	165	318	399	529	4.64e-30	119
Msa0926800	MtrunA17_Chr4g0045561	37.158	183	79	3	132	314	4	150	7.57e-26	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0926800	AT4G29100.1	46.229	411	127	16	1	321	1	407	2.85e-93	283
Msa0926800	AT2G20100.1	62.722	169	53	2	159	317	190	358	1.53e-62	202
Msa0926800	AT4G29100.2	42.651	347	112	14	1	264	1	343	6.76e-62	201
Msa0926800	AT2G20100.3	49.302	215	53	3	159	317	190	404	1.91e-53	180
Msa0926800	AT2G20100.4	63.303	109	37	1	159	264	190	298	4.29e-35	130
Msa0926800	AT2G20100.2	63.303	109	37	1	159	264	190	298	4.29e-35	130
Msa0926800	AT3G19500.1	48.649	148	48	3	171	318	140	259	1.93e-33	124
Msa0926800	AT3G20640.4	45.294	170	61	5	157	321	250	392	2.25e-33	127
Msa0926800	AT3G20640.1	45.294	170	61	5	157	321	312	454	3.86e-33	127
Msa0926800	AT1G27660.1	52.113	142	35	4	163	299	310	423	5.81e-32	124

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Find 116 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAAAGCAATAAAGAA+AGG	0.461557	6_2:+70845124	Msa0926800:five_prime_UTR
AAAGGAAGAAAAGATGAAGT+TGG	0.451016	6_2:-70845560	None:intergenic
AAAGGAGGAGGTTGTGGAGA+TGG	0.454745	6_2:-70845497	None:intergenic
AAATACAAGGCAACCACATT+CGG	0.472873	6_2:+70848359	Msa0926800:CDS
AACTTTGAGAGGTCATATTG+AGG	0.549294	6_2:-70845259	None:intergenic
AAGAAAGTGAGAAAAGAGAA+AGG	0.455130	6_2:+70845317	Msa0926800:five_prime_UTR
AAGAAGGACCTAAAGAGTAG+AGG	0.491449	6_2:+70849976	Msa0926800:CDS
AAGTGTAACAGTTCTGCATC+TGG	0.468089	6_2:+70846963	Msa0926800:intron
AATAGCTATGCATATGGACA+TGG	0.627229	6_2:+70846199	Msa0926800:CDS
AATAGCTTCTAACAAGACAG+AGG	0.708748	6_2:-70848110	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAAAATAAGTCCAACCAA+AGG	+	chr6_2:70845210-70845229	Msa0926800:five_prime_UTR	30.0%
CAAAAATAAGTCCAACCAAA+GGG	+	chr6_2:70845211-70845230	Msa0926800:five_prime_UTR	30.0%
AAGAAAGTGAGAAAAGAGAA+AGG	+	chr6_2:70845317-70845336	Msa0926800:five_prime_UTR	30.0%
TATTGATGTTCCACCAATTA+GGG	-	chr6_2:70845466-70845485	None:intergenic	30.0%
TTATTGATGTTCCACCAATT+AGG	-	chr6_2:70845467-70845486	None:intergenic	30.0%
AAAGGAAGAAAAGATGAAGT+TGG	-	chr6_2:70845563-70845582	None:intergenic	30.0%
TTAGTGACAAGAGATTTAGA+GGG	+	chr6_2:70845774-70845793	Msa0926800:intron	30.0%
ACGTATGTGTTTGGTTAATT+AGG	+	chr6_2:70846021-70846040	Msa0926800:intron	30.0%
ATGTGTTTGGTTAATTAGGA+AGG	+	chr6_2:70846025-70846044	Msa0926800:intron	30.0%
GATGTTAAACAAGAAAACTC+AGG	+	chr6_2:70846175-70846194	Msa0926800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	70845108	70850469	70845108	ID=Msa0926800;Name=Msa0926800
chr6_2	mRNA	70845108	70850469	70845108	ID=Msa0926800-mRNA-1;Parent=Msa0926800;Name=Msa0926800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=302\|1\|1\|1\|0.88\|0.8\|10\|356\|321
chr6_2	exon	70845108	70845639	70845108	ID=Msa0926800-mRNA-1:exon:11650;Parent=Msa0926800-mRNA-1
chr6_2	exon	70846084	70846333	70846084	ID=Msa0926800-mRNA-1:exon:11651;Parent=Msa0926800-mRNA-1
chr6_2	exon	70846966	70847040	70846966	ID=Msa0926800-mRNA-1:exon:11652;Parent=Msa0926800-mRNA-1
chr6_2	exon	70847319	70847384	70847319	ID=Msa0926800-mRNA-1:exon:11653;Parent=Msa0926800-mRNA-1
chr6_2	exon	70848100	70848165	70848100	ID=Msa0926800-mRNA-1:exon:11654;Parent=Msa0926800-mRNA-1
chr6_2	exon	70848324	70848380	70848324	ID=Msa0926800-mRNA-1:exon:11655;Parent=Msa0926800-mRNA-1
chr6_2	exon	70849404	70849448	70849404	ID=Msa0926800-mRNA-1:exon:11656;Parent=Msa0926800-mRNA-1
chr6_2	exon	70849626	70849667	70849626	ID=Msa0926800-mRNA-1:exon:11657;Parent=Msa0926800-mRNA-1
chr6_2	exon	70849958	70850341	70849958	ID=Msa0926800-mRNA-1:exon:11658;Parent=Msa0926800-mRNA-1
chr6_2	exon	70850363	70850469	70850363	ID=Msa0926800-mRNA-1:exon:11659;Parent=Msa0926800-mRNA-1
chr6_2	five_prime_UTR	70845108	70845409	70845108	ID=Msa0926800-mRNA-1:five_prime_utr;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70845410	70845639	70845410	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70846084	70846333	70846084	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70846966	70847040	70846966	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70847319	70847384	70847319	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70848100	70848165	70848100	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70848324	70848380	70848324	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70849404	70849448	70849404	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70849626	70849667	70849626	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	CDS	70849958	70850092	70849958	ID=Msa0926800-mRNA-1:cds;Parent=Msa0926800-mRNA-1
chr6_2	three_prime_UTR	70850093	70850341	70850093	ID=Msa0926800-mRNA-1:three_prime_utr;Parent=Msa0926800-mRNA-1
chr6_2	three_prime_UTR	70850363	70850469	70850363	ID=Msa0926800-mRNA-1:three_prime_utr;Parent=Msa0926800-mRNA-1

Gene Sequence

>Msa0926800

ATGAATAGAGGTGTTGTTCAAAGCTCTCCAGTTCAACAAATGATGGCTAGTAACCCTAATTGGTGGAACATCAATAACATGAGGCCACCATCTCCACAACCTCCTCCTTTATTTTCATCTCCTTCTAACTTTCTCAACCCTAATTATGCACCAACTTCATCTTTTCTTCCTTTTTCTTCATGGCATGAAAATCATCAAGAGCTTCCCGAACCATGGAGTCAACAACTCATGGGTGGAATTGTGGGGGAGGAAGATAAGATTGGTATGAGCCAATTTCAAAATCAAATGCTAATAAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAACTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTGACGAGTTTCAATAACAACATGTTGGATTTCACTAACAACAATAGTAATATAGATGTGAGGCATCCACCACTAGATCGATCTTCTGAGTGTAACAGTTCTGCATCTGGTGGGGCAATGAAAAAAGCTAGGGTTCAACAATCTACAACTCAAACTACTTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCCCTTCATCAGCTTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGGGTCAAATTGAGGCTCTTAGCTTACCATACTTGAGCAATGGATCAGGAAATACAAGGCAACCACATTCGGTTCAAGGAGAGAATAATTGTTTATTCCCTGAAGACCCTGGTCAGCTCTTAAATGAAAATGGCTTGAAGAGGAAAGCAGCTGAAGAGGTTTCTCAAGAAGAACCAAAGAAGGACCTAAAGAGTAGAGGGTTGTGTCTTGTTCCAGTGTCATGTACACTACAAGTTGGGAATGACAATGGAGCTGATTATTGGGCACCTGCCCTAGGAGGAGGCTTTCGGTAG

Protein sequence

>Msa0926800

MNRGVVQSSPVQQMMASNPNWWNINNMRPPSPQPPPLFSSPSNFLNPNYAPTSSFLPFSSWHENHQELPEPWSQQLMGGIVGEEDKIGMSQFQNQMLISQAPNASLVDVKQENSGNSYAYGHGNEELNSCVTSFNNNMLDFTNNNSNIDVRHPPLDRSSECNSSASGGAMKKARVQQSTTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSLPYLSNGSGNTRQPHSVQGENNCLFPEDPGQLLNENGLKRKAAEEVSQEEPKKDLKSRGLCLVPVSCTLQVGNDNGADYWAPALGGGFR*