AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422770 MtrunA17_Chr1g0195451 97.386 306 8 0 1 306 1 306 0.0 605
Msa1422770 MtrunA17_Chr3g0138841 37.500 200 107 3 105 286 83 282 3.32e-36 136
Msa1422770 MtrunA17_Chr4g0018641 31.217 189 116 4 119 306 38 213 9.84e-19 86.7
Msa1422770 MtrunA17_Chr4g0003821 38.462 104 60 1 111 210 6 109 1.28e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422770 AT2G47590.1 72.340 282 64 3 29 306 32 303 1.33e-127 371
Msa1422770 AT5G24850.1 42.157 204 109 5 110 306 73 274 2.55e-40 148
Msa1422770 AT3G15620.1 39.623 106 60 1 109 210 15 120 3.66e-13 70.1
Msa1422770 AT3G15620.2 39.623 106 60 1 109 210 15 120 3.89e-13 69.7
Msa1422770 AT4G25290.1 28.743 167 103 4 111 273 28 182 5.06e-13 69.7

Find 0 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAAAAGATGATTTTTTGA+AGG + tig0025455:259-278 Msa1422770:intergenic 20.0%
!!! TGAAAAAGATGATTTTTTGA+AGG + tig0025455:259-278 Msa1422770:intergenic 20.0%
!!! TGATTTTTTGAAGGTTTTGT+TGG + tig0025455:250-269 Msa1422770:intergenic 25.0%
! ATAAACAGGTAAAACAGAAA+TGG + tig0025455:433-452 Msa1422770:intergenic 25.0%
!!! TGCTAGTTTTTTGATTGAAT+CGG - tig0025455:515-534 Msa1422770:CDS 25.0%
!!! TTTTTTGATTGAATCGGTTT+CGG - tig0025455:521-540 Msa1422770:CDS 25.0%
!!! TGATTTTTTGAAGGTTTTGT+TGG + tig0025455:250-269 Msa1422770:intergenic 25.0%
! ATAAACAGGTAAAACAGAAA+TGG + tig0025455:433-452 Msa1422770:intergenic 25.0%
!!! TGCTAGTTTTTTGATTGAAT+CGG - tig0025455:515-534 Msa1422770:CDS 25.0%
!!! TTTTTTGATTGAATCGGTTT+CGG - tig0025455:521-540 Msa1422770:CDS 25.0%
! GATAGTAAAGATGGGATTTT+GGG + tig0025455:138-157 Msa1422770:intergenic 30.0%
! TGATAGTAAAGATGGGATTT+TGG + tig0025455:139-158 Msa1422770:intergenic 30.0%
GTTGGTACTTTAAGCTTATT+GGG + tig0025455:171-190 Msa1422770:intergenic 30.0%
!!! TTTTTGAAGGTTTTGTTGGA+AGG + tig0025455:246-265 Msa1422770:intergenic 30.0%
ATTATGGGAAATCTTCATCT+GGG - tig0025455:469-488 Msa1422770:CDS 30.0%
ATCAAAAAACTAGCACGATA+AGG + tig0025455:510-529 Msa1422770:intergenic 30.0%
AAGTACTTTGTATCATGTTG+AGG - tig0025455:749-768 Msa1422770:CDS 30.0%
CTAAAACCACCATAATTTGA+AGG + tig0025455:801-820 Msa1422770:intergenic 30.0%
TAGAGATAGAGTTCAGAAAT+TGG - tig0025455:818-837 Msa1422770:CDS 30.0%
! GATAGTAAAGATGGGATTTT+GGG + tig0025455:138-157 Msa1422770:intergenic 30.0%
! TGATAGTAAAGATGGGATTT+TGG + tig0025455:139-158 Msa1422770:intergenic 30.0%
GTTGGTACTTTAAGCTTATT+GGG + tig0025455:171-190 Msa1422770:intergenic 30.0%
!!! TTTTTGAAGGTTTTGTTGGA+AGG + tig0025455:246-265 Msa1422770:intergenic 30.0%
ATTATGGGAAATCTTCATCT+GGG - tig0025455:469-488 Msa1422770:CDS 30.0%
ATCAAAAAACTAGCACGATA+AGG + tig0025455:510-529 Msa1422770:intergenic 30.0%
AAGTACTTTGTATCATGTTG+AGG - tig0025455:749-768 Msa1422770:CDS 30.0%
CTAAAACCACCATAATTTGA+AGG + tig0025455:801-820 Msa1422770:intergenic 30.0%
TAGAGATAGAGTTCAGAAAT+TGG - tig0025455:818-837 Msa1422770:CDS 30.0%
!!! GGATTTTGGGTTGGAATAAA+GGG + tig0025455:125-144 Msa1422770:intergenic 35.0%
! GGTTGGTACTTTAAGCTTAT+TGG + tig0025455:172-191 Msa1422770:intergenic 35.0%
TTTGTTGGAAGGTGAAGAAT+GGG + tig0025455:235-254 Msa1422770:intergenic 35.0%
! TTTTGTTGGAAGGTGAAGAA+TGG + tig0025455:236-255 Msa1422770:intergenic 35.0%
ATCATTACGGAACCAAACAA+TGG + tig0025455:364-383 Msa1422770:intergenic 35.0%
CATGAACACGAAGATCATTA+CGG + tig0025455:377-396 Msa1422770:intergenic 35.0%
GCAGGATCAAAACAATAAAC+AGG + tig0025455:447-466 Msa1422770:intergenic 35.0%
!!! TGTTTTGATCCTGCTGATTA+TGG - tig0025455:453-472 Msa1422770:CDS 35.0%
!! GTTTTGATCCTGCTGATTAT+GGG - tig0025455:454-473 Msa1422770:CDS 35.0%
GATTATGGGAAATCTTCATC+TGG - tig0025455:468-487 Msa1422770:CDS 35.0%
TCATCTGGGTTTGATAAAAC+AGG - tig0025455:483-502 Msa1422770:CDS 35.0%
GGATCTTAGGAAGAATCTTA+AGG - tig0025455:542-561 Msa1422770:CDS 35.0%
TTGAATTGGCGAAGGAAATT+GGG - tig0025455:616-635 Msa1422770:CDS 35.0%
GAGGATATGCCTTCAAATTA+TGG - tig0025455:789-808 Msa1422770:CDS 35.0%
GATATGCCTTCAAATTATGG+TGG - tig0025455:792-811 Msa1422770:CDS 35.0%
GAGTTCAGAAATTGGAGATA+AGG - tig0025455:826-845 Msa1422770:CDS 35.0%
GGAGATAAGGAAAACTATTG+AGG - tig0025455:839-858 Msa1422770:CDS 35.0%
AAGGAAAACTATTGAGGCTT+TGG - tig0025455:845-864 Msa1422770:CDS 35.0%
!!! GGATTTTGGGTTGGAATAAA+GGG + tig0025455:125-144 Msa1422770:intergenic 35.0%
! GGTTGGTACTTTAAGCTTAT+TGG + tig0025455:172-191 Msa1422770:intergenic 35.0%
TTTGTTGGAAGGTGAAGAAT+GGG + tig0025455:235-254 Msa1422770:intergenic 35.0%
! TTTTGTTGGAAGGTGAAGAA+TGG + tig0025455:236-255 Msa1422770:intergenic 35.0%
ATCATTACGGAACCAAACAA+TGG + tig0025455:364-383 Msa1422770:intergenic 35.0%
CATGAACACGAAGATCATTA+CGG + tig0025455:377-396 Msa1422770:intergenic 35.0%
GCAGGATCAAAACAATAAAC+AGG + tig0025455:447-466 Msa1422770:intergenic 35.0%
!!! TGTTTTGATCCTGCTGATTA+TGG - tig0025455:453-472 Msa1422770:CDS 35.0%
!! GTTTTGATCCTGCTGATTAT+GGG - tig0025455:454-473 Msa1422770:CDS 35.0%
GATTATGGGAAATCTTCATC+TGG - tig0025455:468-487 Msa1422770:CDS 35.0%
TCATCTGGGTTTGATAAAAC+AGG - tig0025455:483-502 Msa1422770:CDS 35.0%
GGATCTTAGGAAGAATCTTA+AGG - tig0025455:542-561 Msa1422770:CDS 35.0%
TTGAATTGGCGAAGGAAATT+GGG - tig0025455:616-635 Msa1422770:CDS 35.0%
GAGGATATGCCTTCAAATTA+TGG - tig0025455:789-808 Msa1422770:CDS 35.0%
GATATGCCTTCAAATTATGG+TGG - tig0025455:792-811 Msa1422770:CDS 35.0%
GAGTTCAGAAATTGGAGATA+AGG - tig0025455:826-845 Msa1422770:CDS 35.0%
GGAGATAAGGAAAACTATTG+AGG - tig0025455:839-858 Msa1422770:CDS 35.0%
AAGGAAAACTATTGAGGCTT+TGG - tig0025455:845-864 Msa1422770:CDS 35.0%
TTGAGATTCTCTTTCTCTGG+TGG + tig0025455:27-46 Msa1398790:intergenic 40.0%
AGGTTGAGATTCTCTTTCTC+TGG + tig0025455:30-49 Msa1398790:intergenic 40.0%
!!! TTTTGGGTTGGAATAAAGGG+AGG + tig0025455:122-141 Msa1422770:intergenic 40.0%
!!! GGGATTTTGGGTTGGAATAA+AGG + tig0025455:126-145 Msa1422770:intergenic 40.0%
!! GTAAAGATGGGATTTTGGGT+TGG + tig0025455:134-153 Msa1422770:intergenic 40.0%
! GTGGTGGTGATAGTAAAGAT+GGG + tig0025455:146-165 Msa1422770:intergenic 40.0%
ACTTTAAGCTTATTGGGTGG+TGG + tig0025455:165-184 Msa1422770:intergenic 40.0%
GGTACTTTAAGCTTATTGGG+TGG + tig0025455:168-187 Msa1422770:intergenic 40.0%
ATGAGTGAGTGATGAAGCTT+GGG + tig0025455:193-212 Msa1422770:intergenic 40.0%
ATTACGGAACCAAACAATGG+CGG + tig0025455:361-380 Msa1422770:intergenic 40.0%
GAAGATTTCCCATAATCAGC+AGG + tig0025455:465-484 Msa1422770:intergenic 40.0%
! TTGAATCGGTTTCGGATCTT+AGG - tig0025455:529-548 Msa1422770:CDS 40.0%
AGGAAGAATCTTAAGGCAAG+AGG - tig0025455:549-568 Msa1422770:CDS 40.0%
GGAAGAATCTTAAGGCAAGA+GGG - tig0025455:550-569 Msa1422770:CDS 40.0%
AATTCAACCAAAACCGTCTC+CGG + tig0025455:603-622 Msa1422770:intergenic 40.0%
GTTGAATTGGCGAAGGAAAT+TGG - tig0025455:615-634 Msa1422770:CDS 40.0%
TGAATTGGCGAAGGAAATTG+GGG - tig0025455:617-636 Msa1422770:CDS 40.0%
TGCTGTGTATTGTCATAGAG+AGG - tig0025455:644-663 Msa1422770:CDS 40.0%
TAGAGAGGTTTCTCATGATG+AGG - tig0025455:659-678 Msa1422770:CDS 40.0%
TTCTCATGATGAGGTGAAGA+TGG - tig0025455:668-687 Msa1422770:CDS 40.0%
AAGATGGAGGAGAAGATTGA+AGG - tig0025455:684-703 Msa1422770:CDS 40.0%
AGATGGAGGAGAAGATTGAA+GGG - tig0025455:685-704 Msa1422770:CDS 40.0%
GAAGATTGAAGGGAAGATGA+AGG - tig0025455:695-714 Msa1422770:CDS 40.0%
!! ATGTGGAGGTGAAGTGTTTT+TGG - tig0025455:724-743 Msa1422770:CDS 40.0%
!! TGTGGAGGTGAAGTGTTTTT+GGG - tig0025455:725-744 Msa1422770:CDS 40.0%
! TGAGGATTTGCCGTTTAGTT+TGG - tig0025455:767-786 Msa1422770:CDS 40.0%
GGCATATCCTCCAAACTAAA+CGG + tig0025455:780-799 Msa1422770:intergenic 40.0%
!! TGAGGCTTTGGATCAACTTA+AGG - tig0025455:857-876 Msa1422770:CDS 40.0%
!! GAGGCTTTGGATCAACTTAA+GGG - tig0025455:858-877 Msa1422770:CDS 40.0%
TTGAGATTCTCTTTCTCTGG+TGG + tig0025455:27-46 Msa1422770:intergenic 40.0%
AGGTTGAGATTCTCTTTCTC+TGG + tig0025455:30-49 Msa1422770:intergenic 40.0%
!!! TTTTGGGTTGGAATAAAGGG+AGG + tig0025455:122-141 Msa1422770:intergenic 40.0%
!!! GGGATTTTGGGTTGGAATAA+AGG + tig0025455:126-145 Msa1422770:intergenic 40.0%
!! GTAAAGATGGGATTTTGGGT+TGG + tig0025455:134-153 Msa1422770:intergenic 40.0%
! GTGGTGGTGATAGTAAAGAT+GGG + tig0025455:146-165 Msa1422770:intergenic 40.0%
ACTTTAAGCTTATTGGGTGG+TGG + tig0025455:165-184 Msa1422770:intergenic 40.0%
GGTACTTTAAGCTTATTGGG+TGG + tig0025455:168-187 Msa1422770:intergenic 40.0%
ATGAGTGAGTGATGAAGCTT+GGG + tig0025455:193-212 Msa1422770:intergenic 40.0%
ATTACGGAACCAAACAATGG+CGG + tig0025455:361-380 Msa1422770:intergenic 40.0%
GAAGATTTCCCATAATCAGC+AGG + tig0025455:465-484 Msa1422770:intergenic 40.0%
! TTGAATCGGTTTCGGATCTT+AGG - tig0025455:529-548 Msa1422770:CDS 40.0%
AGGAAGAATCTTAAGGCAAG+AGG - tig0025455:549-568 Msa1422770:CDS 40.0%
GGAAGAATCTTAAGGCAAGA+GGG - tig0025455:550-569 Msa1422770:CDS 40.0%
AATTCAACCAAAACCGTCTC+CGG + tig0025455:603-622 Msa1422770:intergenic 40.0%
GTTGAATTGGCGAAGGAAAT+TGG - tig0025455:615-634 Msa1422770:CDS 40.0%
TGAATTGGCGAAGGAAATTG+GGG - tig0025455:617-636 Msa1422770:CDS 40.0%
TGCTGTGTATTGTCATAGAG+AGG - tig0025455:644-663 Msa1422770:CDS 40.0%
TAGAGAGGTTTCTCATGATG+AGG - tig0025455:659-678 Msa1422770:CDS 40.0%
TTCTCATGATGAGGTGAAGA+TGG - tig0025455:668-687 Msa1422770:CDS 40.0%
AAGATGGAGGAGAAGATTGA+AGG - tig0025455:684-703 Msa1422770:CDS 40.0%
AGATGGAGGAGAAGATTGAA+GGG - tig0025455:685-704 Msa1422770:CDS 40.0%
GAAGATTGAAGGGAAGATGA+AGG - tig0025455:695-714 Msa1422770:CDS 40.0%
!! ATGTGGAGGTGAAGTGTTTT+TGG - tig0025455:724-743 Msa1422770:CDS 40.0%
!! TGTGGAGGTGAAGTGTTTTT+GGG - tig0025455:725-744 Msa1422770:CDS 40.0%
! TGAGGATTTGCCGTTTAGTT+TGG - tig0025455:767-786 Msa1422770:CDS 40.0%
GGCATATCCTCCAAACTAAA+CGG + tig0025455:780-799 Msa1422770:intergenic 40.0%
!! TGAGGCTTTGGATCAACTTA+AGG - tig0025455:857-876 Msa1422770:CDS 40.0%
!! GAGGCTTTGGATCAACTTAA+GGG - tig0025455:858-877 Msa1422770:CDS 40.0%
! TCTGGTGGTGTTTGGTTGTT+GGG + tig0025455:12-31 Msa1398790:intergenic 45.0%
! TCTCTTTCTCTGGTGGTGTT+TGG + tig0025455:20-39 Msa1398790:intergenic 45.0%
TTGGAATAAAGGGAGGAGAG+AGG + tig0025455:115-134 Msa1422770:intergenic 45.0%
! GGTGGTGGTGATAGTAAAGA+TGG + tig0025455:147-166 Msa1422770:intergenic 45.0%
! TTAAGCTTATTGGGTGGTGG+TGG + tig0025455:162-181 Msa1422770:intergenic 45.0%
GATGAGTGAGTGATGAAGCT+TGG + tig0025455:194-213 Msa1422770:intergenic 45.0%
!! AGGTGAAGAATGGGTTTTGG+TGG + tig0025455:226-245 Msa1422770:intergenic 45.0%
!! GGAAGGTGAAGAATGGGTTT+TGG + tig0025455:229-248 Msa1422770:intergenic 45.0%
AGGAGAGTGGTGATTTGAGA+GGG + tig0025455:287-306 Msa1422770:intergenic 45.0%
AAGGAGAGTGGTGATTTGAG+AGG + tig0025455:288-307 Msa1422770:intergenic 45.0%
GAATCTTAAGGCAAGAGGGT+CGG - tig0025455:554-573 Msa1422770:CDS 45.0%
!!! GGAGACGGTTTTGGTTGAAT+TGG - tig0025455:602-621 Msa1422770:CDS 45.0%
!!! GGTTTTGGTTGAATTGGCGA+AGG - tig0025455:608-627 Msa1422770:CDS 45.0%
TCATGATGAGGTGAAGATGG+AGG - tig0025455:671-690 Msa1422770:CDS 45.0%
GATTGAAGGGAAGATGAAGG+AGG - tig0025455:698-717 Msa1422770:CDS 45.0%
GAAGATGAAGGAGGAGAATG+TGG - tig0025455:707-726 Msa1422770:CDS 45.0%
!! GTGGAGGTGAAGTGTTTTTG+GGG - tig0025455:726-745 Msa1422770:CDS 45.0%
!! GGATTTGCCGTTTAGTTTGG+AGG - tig0025455:770-789 Msa1422770:CDS 45.0%
GTTTGGTTGTTGGGTTCCAT+AGG + tig0025455:3-22 Msa1422770:intergenic 45.0%
! TCTGGTGGTGTTTGGTTGTT+GGG + tig0025455:12-31 Msa1422770:intergenic 45.0%
! TCTCTTTCTCTGGTGGTGTT+TGG + tig0025455:20-39 Msa1422770:intergenic 45.0%
TTGGAATAAAGGGAGGAGAG+AGG + tig0025455:115-134 Msa1422770:intergenic 45.0%
! GGTGGTGGTGATAGTAAAGA+TGG + tig0025455:147-166 Msa1422770:intergenic 45.0%
! TTAAGCTTATTGGGTGGTGG+TGG + tig0025455:162-181 Msa1422770:intergenic 45.0%
GATGAGTGAGTGATGAAGCT+TGG + tig0025455:194-213 Msa1422770:intergenic 45.0%
!! AGGTGAAGAATGGGTTTTGG+TGG + tig0025455:226-245 Msa1422770:intergenic 45.0%
!! GGAAGGTGAAGAATGGGTTT+TGG + tig0025455:229-248 Msa1422770:intergenic 45.0%
AGGAGAGTGGTGATTTGAGA+GGG + tig0025455:287-306 Msa1422770:intergenic 45.0%
AAGGAGAGTGGTGATTTGAG+AGG + tig0025455:288-307 Msa1422770:intergenic 45.0%
GAATCTTAAGGCAAGAGGGT+CGG - tig0025455:554-573 Msa1422770:CDS 45.0%
!!! GGAGACGGTTTTGGTTGAAT+TGG - tig0025455:602-621 Msa1422770:CDS 45.0%
!!! GGTTTTGGTTGAATTGGCGA+AGG - tig0025455:608-627 Msa1422770:CDS 45.0%
TCATGATGAGGTGAAGATGG+AGG - tig0025455:671-690 Msa1422770:CDS 45.0%
GATTGAAGGGAAGATGAAGG+AGG - tig0025455:698-717 Msa1422770:CDS 45.0%
GAAGATGAAGGAGGAGAATG+TGG - tig0025455:707-726 Msa1422770:CDS 45.0%
!! GTGGAGGTGAAGTGTTTTTG+GGG - tig0025455:726-745 Msa1422770:CDS 45.0%
!! GGATTTGCCGTTTAGTTTGG+AGG - tig0025455:770-789 Msa1422770:CDS 45.0%
! CTCTGGTGGTGTTTGGTTGT+TGG + tig0025455:13-32 Msa1398790:intergenic 50.0%
AGGGAGAGAGAAGCAAGTGA+CGG + tig0025455:84-103 Msa1422770:intergenic 50.0%
GAGGAGAGAGGAGAGAGAAA+GGG + tig0025455:103-122 Msa1422770:intergenic 50.0%
GTGAGTGATGAAGCTTGGGT+TGG + tig0025455:189-208 Msa1422770:intergenic 50.0%
AGTAGGACGGTGAGGGATTA+AGG + tig0025455:307-326 Msa1422770:intergenic 50.0%
TTCGGAGAACCGCCATTGTT+TGG - tig0025455:349-368 Msa1422770:CDS 50.0%
TCGGATCTTGTGGTGAGAGT+TGG - tig0025455:573-592 Msa1422770:CDS 50.0%
CGGATCTTGTGGTGAGAGTT+GGG - tig0025455:574-593 Msa1422770:CDS 50.0%
TGTGGTGAGAGTTGGGAATC+CGG - tig0025455:581-600 Msa1422770:CDS 50.0%
ATTGGCGAAGGAAATTGGGG+CGG - tig0025455:620-639 Msa1422770:CDS 50.0%
GATGAAGGAGGAGAATGTGG+AGG - tig0025455:710-729 Msa1422770:CDS 50.0%
GCTGAACATCACCACGAGAA+GGG + tig0025455:887-906 Msa1422770:intergenic 50.0%
AGCTGAACATCACCACGAGA+AGG + tig0025455:888-907 Msa1422770:intergenic 50.0%
! TCTCGTGGTGATGTTCAGCT+TGG - tig0025455:888-907 Msa1422770:CDS 50.0%
! CTCTGGTGGTGTTTGGTTGT+TGG + tig0025455:13-32 Msa1422770:intergenic 50.0%
AGGGAGAGAGAAGCAAGTGA+CGG + tig0025455:84-103 Msa1422770:intergenic 50.0%
GAGGAGAGAGGAGAGAGAAA+GGG + tig0025455:103-122 Msa1422770:intergenic 50.0%
GTGAGTGATGAAGCTTGGGT+TGG + tig0025455:189-208 Msa1422770:intergenic 50.0%
AGTAGGACGGTGAGGGATTA+AGG + tig0025455:307-326 Msa1422770:intergenic 50.0%
TTCGGAGAACCGCCATTGTT+TGG - tig0025455:349-368 Msa1422770:CDS 50.0%
TCGGATCTTGTGGTGAGAGT+TGG - tig0025455:573-592 Msa1422770:CDS 50.0%
CGGATCTTGTGGTGAGAGTT+GGG - tig0025455:574-593 Msa1422770:CDS 50.0%
TGTGGTGAGAGTTGGGAATC+CGG - tig0025455:581-600 Msa1422770:CDS 50.0%
ATTGGCGAAGGAAATTGGGG+CGG - tig0025455:620-639 Msa1422770:CDS 50.0%
GATGAAGGAGGAGAATGTGG+AGG - tig0025455:710-729 Msa1422770:CDS 50.0%
GCTGAACATCACCACGAGAA+GGG + tig0025455:887-906 Msa1422770:intergenic 50.0%
AGCTGAACATCACCACGAGA+AGG + tig0025455:888-907 Msa1422770:intergenic 50.0%
! TCTCGTGGTGATGTTCAGCT+TGG - tig0025455:888-907 Msa1422770:CDS 50.0%
TCTCAACCTCACACCCTCAC+CGG - tig0025455:41-60 Msa1422770:CDS 55.0%
AGAGAAGCAAGTGACGGTGG+TGG + tig0025455:78-97 Msa1422770:intergenic 55.0%
GAGAGAGAAGCAAGTGACGG+TGG + tig0025455:81-100 Msa1422770:intergenic 55.0%
GGAGGAGAGAGGAGAGAGAA+AGG + tig0025455:104-123 Msa1422770:intergenic 55.0%
CGGTGAGGGATTAAGGAGAG+TGG + tig0025455:300-319 Msa1422770:intergenic 55.0%
AAGGGTCAGTAGGACGGTGA+GGG + tig0025455:314-333 Msa1422770:intergenic 55.0%
CGGAAGAAGGGTCAGTAGGA+CGG + tig0025455:320-339 Msa1422770:intergenic 55.0%
GAGAGTTGGGAATCCGGAGA+CGG - tig0025455:587-606 Msa1422770:CDS 55.0%
! TGGGAATCCGGAGACGGTTT+TGG - tig0025455:593-612 Msa1422770:CDS 55.0%
CTTAAGGGTCTCCCTTCTCG+TGG - tig0025455:873-892 Msa1422770:CDS 55.0%
TCTCAACCTCACACCCTCAC+CGG - tig0025455:41-60 Msa1422770:CDS 55.0%
AGAGAAGCAAGTGACGGTGG+TGG + tig0025455:78-97 Msa1422770:intergenic 55.0%
GAGAGAGAAGCAAGTGACGG+TGG + tig0025455:81-100 Msa1422770:intergenic 55.0%
GGAGGAGAGAGGAGAGAGAA+AGG + tig0025455:104-123 Msa1422770:intergenic 55.0%
CGGTGAGGGATTAAGGAGAG+TGG + tig0025455:300-319 Msa1422770:intergenic 55.0%
AAGGGTCAGTAGGACGGTGA+GGG + tig0025455:314-333 Msa1422770:intergenic 55.0%
CGGAAGAAGGGTCAGTAGGA+CGG + tig0025455:320-339 Msa1422770:intergenic 55.0%
GAGAGTTGGGAATCCGGAGA+CGG - tig0025455:587-606 Msa1422770:CDS 55.0%
! TGGGAATCCGGAGACGGTTT+TGG - tig0025455:593-612 Msa1422770:CDS 55.0%
CTTAAGGGTCTCCCTTCTCG+TGG - tig0025455:873-892 Msa1422770:CDS 55.0%
GGAAGTGGTGGTTCCGGTGA+GGG + tig0025455:57-76 Msa1422770:intergenic 60.0%
TGGAAGTGGTGGTTCCGGTG+AGG + tig0025455:58-77 Msa1422770:intergenic 60.0%
!! GGTGGTGGAAGTGGTGGTTC+CGG + tig0025455:63-82 Msa1422770:intergenic 60.0%
!! AGTGACGGTGGTGGAAGTGG+TGG + tig0025455:69-88 Msa1422770:intergenic 60.0%
!! GCAAGTGACGGTGGTGGAAG+TGG + tig0025455:72-91 Msa1422770:intergenic 60.0%
GAAGGGTCAGTAGGACGGTG+AGG + tig0025455:315-334 Msa1422770:intergenic 60.0%
GAAGAGCAGCGGCGGAAGAA+GGG + tig0025455:332-351 Msa1422770:intergenic 60.0%
CTTCTTCCGCCGCTGCTCTT+CGG - tig0025455:331-350 Msa1422770:CDS 60.0%
GGCAAGAGGGTCGGATCTTG+TGG - tig0025455:563-582 Msa1422770:CDS 60.0%
GGAAGTGGTGGTTCCGGTGA+GGG + tig0025455:57-76 Msa1422770:intergenic 60.0%
TGGAAGTGGTGGTTCCGGTG+AGG + tig0025455:58-77 Msa1422770:intergenic 60.0%
!! GGTGGTGGAAGTGGTGGTTC+CGG + tig0025455:63-82 Msa1422770:intergenic 60.0%
!! AGTGACGGTGGTGGAAGTGG+TGG + tig0025455:69-88 Msa1422770:intergenic 60.0%
!! GCAAGTGACGGTGGTGGAAG+TGG + tig0025455:72-91 Msa1422770:intergenic 60.0%
GAAGGGTCAGTAGGACGGTG+AGG + tig0025455:315-334 Msa1422770:intergenic 60.0%
GAAGAGCAGCGGCGGAAGAA+GGG + tig0025455:332-351 Msa1422770:intergenic 60.0%
CTTCTTCCGCCGCTGCTCTT+CGG - tig0025455:331-350 Msa1422770:CDS 60.0%
GGCAAGAGGGTCGGATCTTG+TGG - tig0025455:563-582 Msa1422770:CDS 60.0%
! GTGGTTCCGGTGAGGGTGTG+AGG + tig0025455:50-69 Msa1422770:intergenic 65.0%
GCGGCGGAAGAAGGGTCAGT+AGG + tig0025455:324-343 Msa1422770:intergenic 65.0%
CGAAGAGCAGCGGCGGAAGA+AGG + tig0025455:333-352 Msa1422770:intergenic 65.0%
GGTTCTCCGAAGAGCAGCGG+CGG + tig0025455:340-359 Msa1422770:intergenic 65.0%
GGCGGTTCTCCGAAGAGCAG+CGG + tig0025455:343-362 Msa1422770:intergenic 65.0%
! GTGGTTCCGGTGAGGGTGTG+AGG + tig0025455:50-69 Msa1422770:intergenic 65.0%
GCGGCGGAAGAAGGGTCAGT+AGG + tig0025455:324-343 Msa1422770:intergenic 65.0%
CGAAGAGCAGCGGCGGAAGA+AGG + tig0025455:333-352 Msa1422770:intergenic 65.0%
GGTTCTCCGAAGAGCAGCGG+CGG + tig0025455:340-359 Msa1422770:intergenic 65.0%
GGCGGTTCTCCGAAGAGCAG+CGG + tig0025455:343-362 Msa1422770:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0025455 gene 3 920 3 ID=Msa1422770;Name=Msa1422770
tig0025455 mRNA 3 920 3 ID=Msa1422770-mRNA-1;Parent=Msa1422770;Name=Msa1422770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|306
tig0025455 exon 3 920 3 ID=Msa1422770-mRNA-1:exon:2792;Parent=Msa1422770-mRNA-1
tig0025455 CDS 3 920 3 ID=Msa1422770-mRNA-1:cds;Parent=Msa1422770-mRNA-1
Gene Sequence

>Msa1422770

ATGGAACCCAACAACCAAACACCACCAGAGAAAGAGAATCTCAACCTCACACCCTCACCGGAACCACCACTTCCACCACCGTCACTTGCTTCTCTCTCCCTTTCTCTCTCCTCTCTCCTCCCTTTATTCCAACCCAAAATCCCATCTTTACTATCACCACCACCACCCAATAAGCTTAAAGTACCAACCCAAGCTTCATCACTCACTCATCTTTCACTTTCCACCAAAACCCATTCTTCACCTTCCAACAAAACCTTCAAAAAATCATCTTTTTCAGCAAACCCTCTCAAATCACCACTCTCCTTAATCCCTCACCGTCCTACTGACCCTTCTTCCGCCGCTGCTCTTCGGAGAACCGCCATTGTTTGGTTCCGTAATGATCTTCGTGTTCATGATAACGAAGCTTTGAACACTGCAAATAATGAGTCCATTTCTGTTTTACCTGTTTATTGTTTTGATCCTGCTGATTATGGGAAATCTTCATCTGGGTTTGATAAAACAGGTCCTTATCGTGCTAGTTTTTTGATTGAATCGGTTTCGGATCTTAGGAAGAATCTTAAGGCAAGAGGGTCGGATCTTGTGGTGAGAGTTGGGAATCCGGAGACGGTTTTGGTTGAATTGGCGAAGGAAATTGGGGCGGATGCTGTGTATTGTCATAGAGAGGTTTCTCATGATGAGGTGAAGATGGAGGAGAAGATTGAAGGGAAGATGAAGGAGGAGAATGTGGAGGTGAAGTGTTTTTGGGGAAGTACTTTGTATCATGTTGAGGATTTGCCGTTTAGTTTGGAGGATATGCCTTCAAATTATGGTGGTTTTAGAGATAGAGTTCAGAAATTGGAGATAAGGAAAACTATTGAGGCTTTGGATCAACTTAAGGGTCTCCCTTCTCGTGGTGATGTTCAGCTTGGTGATATTCCT

Protein sequence

>Msa1422770

MEPNNQTPPEKENLNLTPSPEPPLPPPSLASLSLSLSSLLPLFQPKIPSLLSPPPPNKLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSANPLKSPLSLIPHRPTDPSSAAALRRTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIESVSDLRKNLKARGSDLVVRVGNPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKMKEENVEVKCFWGSTLYHVEDLPFSLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPSRGDVQLGDIP