AlfalfaGEDB | Msa0240630

M. sativa cultivar zhongmu-4 / Msa0240630

KEGG: K02694
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035
PFAM: PF02507.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240630	XP_013462992.1	87.054	224	3	2	1	198	1	224	3.95e-131	379

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240630	sp\|Q9SHE8\|PSAF_ARATH	62.946	224	54	4	1	198	1	221	2.99e-89	265

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240630	I3SN70	87.054	224	3	2	1	198	1	224	1.89e-131	379

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0240630	0.853018	3.153591e-61	-8.615850e-47
Msa0000800	Msa0240630	-0.835054	2.097246e-56	-8.615850e-47
Msa0001040	Msa0240630	0.818690	1.718599e-52	-8.615850e-47
Msa0001510	Msa0240630	0.879537	1.149579e-69	-8.615850e-47
Msa0001540	Msa0240630	0.812076	5.084293e-51	-8.615850e-47
Msa0001550	Msa0240630	0.843942	1.027274e-58	-8.615850e-47
Msa0002110	Msa0240630	0.889020	3.517441e-73	-8.615850e-47
Msa0002690	Msa0240630	0.938686	4.463421e-99	-8.615850e-47
Msa0002700	Msa0240630	0.938940	2.923681e-99	-8.615850e-47
Msa0003340	Msa0240630	0.826856	2.155949e-54	-8.615850e-47

Showing 1 to 10 of 2,728 entries

Previous1 2 3 4 5…273Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240630	MtrunA17_Chr2g0291941	87.054	224	3	2	1	198	1	224	3.63e-135	379

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240630	AT1G31330.1	62.946	224	54	4	1	198	1	221	3.04e-90	265

Showing 1 to 1 of 1 entries

Previous1Next

Find 58 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATCTAGAAGCAAG+TGG	0.593997	2_2:-15982607	None:intergenic
AAAAGAAACTTAGACATCCT+TGG	0.511183	2_2:-15982689	None:intergenic
AAAAGAAGGTTTGATAACTA+TGG	0.369761	2_2:+15982385	Msa0240630:CDS
AACTCTCTGTAAGCAGCAAT+AGG	0.463985	2_2:-15982646	None:intergenic
AATGGTGATCAAAGACATTG+GGG	0.721922	2_2:+15982457	Msa0240630:CDS
AATTTAGAATGAGAGTACAT+CGG	0.689094	2_2:-15983826	None:intergenic
AGAGAGGATGATATTGATCA+AGG	0.545712	2_2:+15983409	Msa0240630:CDS
ATAATAATCTCTTTCTGAGT+AGG	0.435495	2_2:-15982577	None:intergenic
ATAGTTATCAAACCTTCTTT+TGG	0.372376	2_2:-15982383	None:intergenic
ATATTGCTGGTTGGATTGGG+TGG	0.459491	2_2:+15982512	Msa0240630:CDS

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAACTTAGACATCCT+TGG	-	chr2_2:15982692-15982711	None:intergenic	30.0%
TACGGATTCGATTCAAATAT+TGG	-	chr2_2:15982893-15982912	None:intergenic	30.0%
TCCTTCAAATACTAAAGGTA+CGG	-	chr2_2:15982911-15982930	None:intergenic	30.0%
AATTCGTCCTCTAATTAGAT+TGG	-	chr2_2:15983009-15983028	None:intergenic	30.0%
TCTTACAAAACGAATTTGTG+AGG	-	chr2_2:15983133-15983152	None:intergenic	30.0%
AGTCCACATTTGAGTAAAAA+AGG	-	chr2_2:15983584-15983603	None:intergenic	30.0%
GCTAGTACAAAAATAAAGCA+AGG	+	chr2_2:15983719-15983738	Msa0240630:three_prime_UTR	30.0%
TACAAAAATAAAGCAAGGAG+AGG	+	chr2_2:15983724-15983743	Msa0240630:three_prime_UTR	30.0%
AAAAGAAACTTAGACATCCT+TGG	-	chr2_2:15982692-15982711	None:intergenic	30.0%
TACGGATTCGATTCAAATAT+TGG	-	chr2_2:15982893-15982912	None:intergenic	30.0%

Showing 1 to 10 of 230 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	15982028	15983837	15982028	ID=Msa0240630;Name=Msa0240630
chr2_2	mRNA	15982028	15983837	15982028	ID=Msa0240630-mRNA-1;Parent=Msa0240630;Name=Msa0240630-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0.25\|1\|0\|0\|4\|315\|235
chr2_2	exon	15982028	15982231	15982028	ID=Msa0240630-mRNA-1:exon:6503;Parent=Msa0240630-mRNA-1
chr2_2	exon	15982292	15982478	15982292	ID=Msa0240630-mRNA-1:exon:6504;Parent=Msa0240630-mRNA-1
chr2_2	exon	15982497	15982696	15982497	ID=Msa0240630-mRNA-1:exon:6505;Parent=Msa0240630-mRNA-1
chr2_2	exon	15983406	15983837	15983406	ID=Msa0240630-mRNA-1:exon:6506;Parent=Msa0240630-mRNA-1
chr2_2	CDS	15982028	15982231	15982028	ID=Msa0240630-mRNA-1:cds;Parent=Msa0240630-mRNA-1
chr2_2	CDS	15982292	15982478	15982292	ID=Msa0240630-mRNA-1:cds;Parent=Msa0240630-mRNA-1
chr2_2	CDS	15982497	15982696	15982497	ID=Msa0240630-mRNA-1:cds;Parent=Msa0240630-mRNA-1
chr2_2	CDS	15983406	15983522	15983406	ID=Msa0240630-mRNA-1:cds;Parent=Msa0240630-mRNA-1
chr2_2	three_prime_UTR	15983523	15983837	15983523	ID=Msa0240630-mRNA-1:three_prime_utr;Parent=Msa0240630-mRNA-1

Gene Sequence

>Msa0240630

ATGTCTCTAACAATTCCAACCAACCTCTCCAAACCCACCTCAACCCTAAGACCAAAACTACCTCATAAACCAAAACTCTCAACCAACATCATCCACTGCAGCACAAACCAAGAAAAACCAACCAACGATGTAAACTCAAATCTAAAAGCATTCTCAGCTGCACTAGCACTCTCATCAATCCTCATCTCATCACCACTCCCCGCTAAACAATCAATCAAAAAGCTTGAATCATCCCTCAAGCTTTACGCTCCGGACAGCGCTCCAGCGCTGGCCATAAAAGCAACAGTTGAGAAAACCAAAAGAAGGTTTGATAACTATGGAAAGCAAGGTTTGTTGTGTGGTGCTGATGGTTTACCACATTTGATAGTGAATGGTGATCAAAGACATTGGGGGATATTGTTTTTGTATATTGCTGGTTGGATTGGGTGGGTTGGCAGGAGTTACTTGATTGCTATTCGTGATGAGAAGAAACCTACTCAGAAAGAGATTATTATTGATGTTCCACTTGCTTCTAGATTGGTTTTTAGAGGGTTCAGTTGGCCTATTGCTGCTTACAGAGAGTTGTTGAATGGTGAACTCATTGCCAAGGATACAAGAGAGGATGATATTGATCAAGGTTGCAGGAAGGGTGATTATGAGAGGAGGGTGCTTTTATTGTTGACTCATTGTGTGGATGGATCTTATAATATTTATGCTCTCAAATTGTAA

Protein sequence

>Msa0240630

MSLTIPTNLSKPTSTLRPKLPHKPKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALSSILISSPLPAKQSIKKLESSLKLYAPDSAPALAIKATVEKTKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELLNGELIAKDTREDDIDQGCRKGDYERRVLLLLTHCVDGSYNIYALKL*