AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0240630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240630 MtrunA17_Chr2g0291941 87.054 224 3 2 1 198 1 224 3.63e-135 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240630 AT1G31330.1 62.946 224 54 4 1 198 1 221 3.04e-90 265

Find 58 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGAGAGGAGTGATTTA+AGG 0.186085 2_2:+15983736 Msa0240630:three_prime_UTR
GTGATTTAAGGGATATATTT+TGG 0.191201 2_2:+15983748 Msa0240630:three_prime_UTR
TCTTAGGGTTGAGGTGGGTT+TGG 0.281147 2_2:-15982056 None:intergenic
TTTGGTTTATGAGGTAGTTT+TGG 0.294416 2_2:-15982079 None:intergenic
GTTGGATTGGGTGGGTTGGC+AGG 0.303659 2_2:+15982521 Msa0240630:CDS
TGAGGTGGGTTTGGAGAGGT+TGG 0.308070 2_2:-15982047 None:intergenic
ATGATGTTGGTTGAGAGTTT+TGG 0.311230 2_2:-15982097 None:intergenic
TGTTCCACTTGCTTCTAGAT+TGG 0.359779 2_2:+15982603 Msa0240630:CDS
CAAGGAGAGGAGTGATTTAA+GGG 0.365945 2_2:+15983737 Msa0240630:three_prime_UTR
AAAAGAAGGTTTGATAACTA+TGG 0.369761 2_2:+15982385 Msa0240630:CDS
ATAGTTATCAAACCTTCTTT+TGG 0.372376 2_2:-15982383 None:intergenic
TTGTATATTGCTGGTTGGAT+TGG 0.374422 2_2:+15982508 Msa0240630:CDS
GTGGGTTTGGAGAGGTTGGT+TGG 0.393718 2_2:-15982043 None:intergenic
TGTATATTGCTGGTTGGATT+GGG 0.400227 2_2:+15982509 Msa0240630:CDS
GCCAGCGCTGGAGCGCTGTC+CGG 0.413463 2_2:-15982337 None:intergenic
ATGATATTGATCAAGGTTGC+AGG 0.420035 2_2:+15983416 Msa0240630:CDS
TTTGGTCTTAGGGTTGAGGT+GGG 0.434939 2_2:-15982061 None:intergenic
ATAATAATCTCTTTCTGAGT+AGG 0.435495 2_2:-15982577 None:intergenic
GCTGGTTGGATTGGGTGGGT+TGG 0.437216 2_2:+15982517 Msa0240630:CDS
TATTGCTGGTTGGATTGGGT+GGG 0.438882 2_2:+15982513 Msa0240630:CDS
GGGTGAAGCTTATTAATTTG+TGG 0.449217 2_2:-15983659 None:intergenic
TCCGGACAGCGCTCCAGCGC+TGG 0.450473 2_2:+15982336 Msa0240630:CDS
ATATTGCTGGTTGGATTGGG+TGG 0.459491 2_2:+15982512 Msa0240630:CDS
TAGATTTGAGTTTACATCGT+TGG 0.460617 2_2:-15982149 None:intergenic
AACTCTCTGTAAGCAGCAAT+AGG 0.463985 2_2:-15982646 None:intergenic
TTGATCAACTTCATATACTT+AGG 0.471999 2_2:-15983612 None:intergenic
GAATGGTGATCAAAGACATT+GGG 0.484178 2_2:+15982456 Msa0240630:CDS
TTGTTGACTCATTGTGTGGA+TGG 0.485766 2_2:+15983469 Msa0240630:CDS
GGTTTGTTGTGTGGTGCTGA+TGG 0.487070 2_2:+15982415 Msa0240630:CDS
GGGTTGAGGTGGGTTTGGAG+AGG 0.489158 2_2:-15982051 None:intergenic
TGTGCTGCAGTGGATGATGT+TGG 0.507380 2_2:-15982110 None:intergenic
AAAAGAAACTTAGACATCCT+TGG 0.511183 2_2:-15982689 None:intergenic
TTTGATAACTATGGAAAGCA+AGG 0.512706 2_2:+15982394 Msa0240630:CDS
TTACCACATTTGATAGTGAA+TGG 0.520029 2_2:+15982439 Msa0240630:CDS
GTCCGGAGCGTAAAGCTTGA+GGG 0.522158 2_2:-15982320 None:intergenic
TTTGAGTTTACATCGTTGGT+TGG 0.526095 2_2:-15982145 None:intergenic
TTTATTGTTGACTCATTGTG+TGG 0.527806 2_2:+15983465 Msa0240630:CDS
ATGTCGGCGACAGCGGGGAG+TGG 0.529776 2_2:-15982220 None:intergenic
ATCCCTCAAGCTTTACGCTC+CGG 0.532519 2_2:+15982318 Msa0240630:CDS
TTTCTTGGTTTGTGCTGCAG+TGG 0.533687 2_2:-15982120 None:intergenic
ATTGATCAAGGTTGCAGGAA+GGG 0.544085 2_2:+15983421 Msa0240630:CDS
AGAGAGGATGATATTGATCA+AGG 0.545712 2_2:+15983409 Msa0240630:CDS
TGTCCGGAGCGTAAAGCTTG+AGG 0.548573 2_2:-15982321 None:intergenic
GAAGCTTATTAATTTGTGGA+AGG 0.551262 2_2:-15983655 None:intergenic
CAGTTGAGAAAACCAAAAGA+AGG 0.554512 2_2:+15982371 Msa0240630:CDS
GGAAGGGTGATTATGAGAGG+AGG 0.563183 2_2:+15983437 Msa0240630:CDS
GCAGGAAGGGTGATTATGAG+AGG 0.563299 2_2:+15983434 Msa0240630:CDS
GCTTACAGAGAGTTGTTGAA+TGG 0.589659 2_2:+15982655 Msa0240630:CDS
TGAATGGTGATCAAAGACAT+TGG 0.591211 2_2:+15982455 Msa0240630:CDS
AAAACCAATCTAGAAGCAAG+TGG 0.593997 2_2:-15982607 None:intergenic
CGGGGAGTGGTGATGAGATG+AGG 0.601172 2_2:-15982207 None:intergenic
TATTGATCAAGGTTGCAGGA+AGG 0.633297 2_2:+15983420 Msa0240630:CDS
GAAGGGTGATTATGAGAGGA+GGG 0.659997 2_2:+15983438 Msa0240630:CDS
GGAAAGCAAGGTTTGTTGTG+TGG 0.661769 2_2:+15982406 Msa0240630:CDS
TCACCATTCACTATCAAATG+TGG 0.665222 2_2:-15982442 None:intergenic
GAATGGTGAACTCATTGCCA+AGG 0.676808 2_2:+15982672 Msa0240630:CDS
AATTTAGAATGAGAGTACAT+CGG 0.689094 2_2:-15983826 None:intergenic
AATGGTGATCAAAGACATTG+GGG 0.721922 2_2:+15982457 Msa0240630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAATTTTGTTATTTTT+AGG + chr2_2:15983319-15983338 Msa0240630:intron 10.0%
!!! AATGAAATTTTGTTATTTTT+AGG + chr2_2:15983319-15983338 Msa0240630:intron 10.0%
!!! TTTGAAATATCAATAATGTA+AGG - chr2_2:15982855-15982874 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG + chr2_2:15982937-15982956 Msa0240630:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG + chr2_2:15982938-15982957 Msa0240630:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG + chr2_2:15982939-15982958 Msa0240630:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG - chr2_2:15983224-15983243 None:intergenic 15.0%
!!! TTTGAAATATCAATAATGTA+AGG - chr2_2:15982855-15982874 None:intergenic 15.0%
!!! TGAAATTAAATTGGTAATAT+TGG + chr2_2:15982937-15982956 Msa0240630:intron 15.0%
!!! GAAATTAAATTGGTAATATT+GGG + chr2_2:15982938-15982957 Msa0240630:intron 15.0%
!!! AAATTAAATTGGTAATATTG+GGG + chr2_2:15982939-15982958 Msa0240630:intron 15.0%
!! GAATTAAAAATTTCATTGAA+TGG - chr2_2:15983224-15983243 None:intergenic 15.0%
!!! ATATTGTTTTTGTATATTGC+TGG + chr2_2:15982499-15982518 Msa0240630:CDS 20.0%
!! ATACTACAATTTAACCAATA+AGG - chr2_2:15982818-15982837 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG + chr2_2:15982928-15982947 Msa0240630:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG + chr2_2:15983043-15983062 Msa0240630:intron 20.0%
!! AAACATAAACTAATGTATGT+GGG + chr2_2:15983278-15983297 Msa0240630:intron 20.0%
!! TGAAGAAGAAAAAAATGAAA+GGG - chr2_2:15983682-15983701 None:intergenic 20.0%
!! ATGAAGAAGAAAAAAATGAA+AGG - chr2_2:15983683-15983702 None:intergenic 20.0%
!!! TTTTTTCTTCTTCATGAAAA+TGG + chr2_2:15983688-15983707 Msa0240630:three_prime_UTR 20.0%
!!! ATATTGTTTTTGTATATTGC+TGG + chr2_2:15982499-15982518 Msa0240630:CDS 20.0%
!! ATACTACAATTTAACCAATA+AGG - chr2_2:15982818-15982837 None:intergenic 20.0%
!! GGACTAAAATGAAATTAAAT+TGG + chr2_2:15982928-15982947 Msa0240630:intron 20.0%
!! CAATTAGGTTTCAAAAATTA+TGG + chr2_2:15983043-15983062 Msa0240630:intron 20.0%
!! AAACATAAACTAATGTATGT+GGG + chr2_2:15983278-15983297 Msa0240630:intron 20.0%
!! TGAAGAAGAAAAAAATGAAA+GGG - chr2_2:15983682-15983701 None:intergenic 20.0%
!! ATGAAGAAGAAAAAAATGAA+AGG - chr2_2:15983683-15983702 None:intergenic 20.0%
!!! TTTTTTCTTCTTCATGAAAA+TGG + chr2_2:15983688-15983707 Msa0240630:three_prime_UTR 20.0%
!! ATAGTTATCAAACCTTCTTT+TGG - chr2_2:15982386-15982405 None:intergenic 25.0%
!! AAAAGAAGGTTTGATAACTA+TGG + chr2_2:15982385-15982404 Msa0240630:CDS 25.0%
! ATATACAAAAACAATATCCC+TGG - chr2_2:15982496-15982515 None:intergenic 25.0%
! ATAATAATCTCTTTCTGAGT+AGG - chr2_2:15982580-15982599 None:intergenic 25.0%
!!! AGTTTCTTTTGTTTACAACA+AGG + chr2_2:15982702-15982721 Msa0240630:intron 25.0%
! GATTGAGTAAATATCCTTAT+TGG + chr2_2:15982801-15982820 Msa0240630:intron 25.0%
! TTTAGTCCTTCAAATACTAA+AGG - chr2_2:15982916-15982935 None:intergenic 25.0%
! TTTGTAACCAATCTAATTAG+AGG + chr2_2:15982999-15983018 Msa0240630:intron 25.0%
!! TTGATTCACATTTTGCAATT+AGG + chr2_2:15983028-15983047 Msa0240630:intron 25.0%
! AGTTTCAAATAACTTAGATG+TGG - chr2_2:15983167-15983186 None:intergenic 25.0%
! CAAACATAAACTAATGTATG+TGG + chr2_2:15983277-15983296 Msa0240630:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG + chr2_2:15983373-15983392 Msa0240630:intron 25.0%
! TTGATCAACTTCATATACTT+AGG - chr2_2:15983615-15983634 None:intergenic 25.0%
!! GTGATTTAAGGGATATATTT+TGG + chr2_2:15983748-15983767 Msa0240630:three_prime_UTR 25.0%
!! ATAGTTATCAAACCTTCTTT+TGG - chr2_2:15982386-15982405 None:intergenic 25.0%
!! AAAAGAAGGTTTGATAACTA+TGG + chr2_2:15982385-15982404 Msa0240630:CDS 25.0%
! ATATACAAAAACAATATCCC+TGG - chr2_2:15982496-15982515 None:intergenic 25.0%
! ATAATAATCTCTTTCTGAGT+AGG - chr2_2:15982580-15982599 None:intergenic 25.0%
!!! AGTTTCTTTTGTTTACAACA+AGG + chr2_2:15982702-15982721 Msa0240630:intron 25.0%
! GATTGAGTAAATATCCTTAT+TGG + chr2_2:15982801-15982820 Msa0240630:intron 25.0%
! TTTAGTCCTTCAAATACTAA+AGG - chr2_2:15982916-15982935 None:intergenic 25.0%
! TTTGTAACCAATCTAATTAG+AGG + chr2_2:15982999-15983018 Msa0240630:intron 25.0%
!! TTGATTCACATTTTGCAATT+AGG + chr2_2:15983028-15983047 Msa0240630:intron 25.0%
! AGTTTCAAATAACTTAGATG+TGG - chr2_2:15983167-15983186 None:intergenic 25.0%
! CAAACATAAACTAATGTATG+TGG + chr2_2:15983277-15983296 Msa0240630:intron 25.0%
!!! TGTTGGTTTTTTGTTGTTTA+TGG + chr2_2:15983373-15983392 Msa0240630:intron 25.0%
! TTGATCAACTTCATATACTT+AGG - chr2_2:15983615-15983634 None:intergenic 25.0%
!! GTGATTTAAGGGATATATTT+TGG + chr2_2:15983748-15983767 Msa0240630:three_prime_UTR 25.0%
!! TTTGGTTTATGAGGTAGTTT+TGG - chr2_2:15982082-15982101 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG - chr2_2:15982152-15982171 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG - chr2_2:15982259-15982278 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG - chr2_2:15982362-15982381 None:intergenic 30.0%
! TTTGATAACTATGGAAAGCA+AGG + chr2_2:15982394-15982413 Msa0240630:CDS 30.0%
!! TTACCACATTTGATAGTGAA+TGG + chr2_2:15982439-15982458 Msa0240630:CDS 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG + chr2_2:15982503-15982522 Msa0240630:CDS 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG + chr2_2:15982614-15982633 Msa0240630:CDS 30.0%
AAAAGAAACTTAGACATCCT+TGG - chr2_2:15982692-15982711 None:intergenic 30.0%
TACGGATTCGATTCAAATAT+TGG - chr2_2:15982893-15982912 None:intergenic 30.0%
TCCTTCAAATACTAAAGGTA+CGG - chr2_2:15982911-15982930 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG - chr2_2:15983009-15983028 None:intergenic 30.0%
TCTTACAAAACGAATTTGTG+AGG - chr2_2:15983133-15983152 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG + chr2_2:15983465-15983484 Msa0240630:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG + chr2_2:15983578-15983597 Msa0240630:three_prime_UTR 30.0%
AGTCCACATTTGAGTAAAAA+AGG - chr2_2:15983584-15983603 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG + chr2_2:15983584-15983603 Msa0240630:three_prime_UTR 30.0%
!! GAAGCTTATTAATTTGTGGA+AGG - chr2_2:15983658-15983677 None:intergenic 30.0%
GCTAGTACAAAAATAAAGCA+AGG + chr2_2:15983719-15983738 Msa0240630:three_prime_UTR 30.0%
TACAAAAATAAAGCAAGGAG+AGG + chr2_2:15983724-15983743 Msa0240630:three_prime_UTR 30.0%
!! TTTGGTTTATGAGGTAGTTT+TGG - chr2_2:15982082-15982101 None:intergenic 30.0%
! TAGATTTGAGTTTACATCGT+TGG - chr2_2:15982152-15982171 None:intergenic 30.0%
!!! AATTGTTTTGATTCTCTGCA+TGG - chr2_2:15982259-15982278 None:intergenic 30.0%
!!! TTTCTCAACTGTTGCTTTTA+TGG - chr2_2:15982362-15982381 None:intergenic 30.0%
! TTTGATAACTATGGAAAGCA+AGG + chr2_2:15982394-15982413 Msa0240630:CDS 30.0%
!! TTACCACATTTGATAGTGAA+TGG + chr2_2:15982439-15982458 Msa0240630:CDS 30.0%
!! TGTTTTTGTATATTGCTGGT+TGG + chr2_2:15982503-15982522 Msa0240630:CDS 30.0%
!!! CTTCTAGATTGGTTTTTAGA+GGG + chr2_2:15982614-15982633 Msa0240630:CDS 30.0%
AAAAGAAACTTAGACATCCT+TGG - chr2_2:15982692-15982711 None:intergenic 30.0%
TACGGATTCGATTCAAATAT+TGG - chr2_2:15982893-15982912 None:intergenic 30.0%
TCCTTCAAATACTAAAGGTA+CGG - chr2_2:15982911-15982930 None:intergenic 30.0%
AATTCGTCCTCTAATTAGAT+TGG - chr2_2:15983009-15983028 None:intergenic 30.0%
TCTTACAAAACGAATTTGTG+AGG - chr2_2:15983133-15983152 None:intergenic 30.0%
!! TTTATTGTTGACTCATTGTG+TGG + chr2_2:15983465-15983484 Msa0240630:CDS 30.0%
!!! GTTCCTTTTTTACTCAAATG+TGG + chr2_2:15983578-15983597 Msa0240630:three_prime_UTR 30.0%
AGTCCACATTTGAGTAAAAA+AGG - chr2_2:15983584-15983603 None:intergenic 30.0%
! TTTTTACTCAAATGTGGACT+TGG + chr2_2:15983584-15983603 Msa0240630:three_prime_UTR 30.0%
!! GAAGCTTATTAATTTGTGGA+AGG - chr2_2:15983658-15983677 None:intergenic 30.0%
GCTAGTACAAAAATAAAGCA+AGG + chr2_2:15983719-15983738 Msa0240630:three_prime_UTR 30.0%
TACAAAAATAAAGCAAGGAG+AGG + chr2_2:15983724-15983743 Msa0240630:three_prime_UTR 30.0%
!!! ATGAGGTAGTTTTGGTCTTA+GGG - chr2_2:15982074-15982093 None:intergenic 35.0%
!!! TATGAGGTAGTTTTGGTCTT+AGG - chr2_2:15982075-15982094 None:intergenic 35.0%
!!! GTTGAGAGTTTTGGTTTATG+AGG - chr2_2:15982091-15982110 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG - chr2_2:15982100-15982119 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG - chr2_2:15982148-15982167 None:intergenic 35.0%
! GATTGATTGTTTCTCACGTT+TGG - chr2_2:15982284-15982303 None:intergenic 35.0%
CAGTTGAGAAAACCAAAAGA+AGG + chr2_2:15982371-15982390 Msa0240630:CDS 35.0%
TCACCATTCACTATCAAATG+TGG - chr2_2:15982445-15982464 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG + chr2_2:15982455-15982474 Msa0240630:CDS 35.0%
GAATGGTGATCAAAGACATT+GGG + chr2_2:15982456-15982475 Msa0240630:CDS 35.0%
AATGGTGATCAAAGACATTG+GGG + chr2_2:15982457-15982476 Msa0240630:CDS 35.0%
! TTGTATATTGCTGGTTGGAT+TGG + chr2_2:15982508-15982527 Msa0240630:CDS 35.0%
! TGTATATTGCTGGTTGGATT+GGG + chr2_2:15982509-15982528 Msa0240630:CDS 35.0%
AAAACCAATCTAGAAGCAAG+TGG - chr2_2:15982610-15982629 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG + chr2_2:15982613-15982632 Msa0240630:CDS 35.0%
TCCGTACCTTTAGTATTTGA+AGG + chr2_2:15982907-15982926 Msa0240630:intron 35.0%
AGAGAGGATGATATTGATCA+AGG + chr2_2:15983409-15983428 Msa0240630:CDS 35.0%
ATGATATTGATCAAGGTTGC+AGG + chr2_2:15983416-15983435 Msa0240630:CDS 35.0%
! GGGTGAAGCTTATTAATTTG+TGG - chr2_2:15983662-15983681 None:intergenic 35.0%
!!! ATGAGGTAGTTTTGGTCTTA+GGG - chr2_2:15982074-15982093 None:intergenic 35.0%
!!! TATGAGGTAGTTTTGGTCTT+AGG - chr2_2:15982075-15982094 None:intergenic 35.0%
!!! GTTGAGAGTTTTGGTTTATG+AGG - chr2_2:15982091-15982110 None:intergenic 35.0%
!! ATGATGTTGGTTGAGAGTTT+TGG - chr2_2:15982100-15982119 None:intergenic 35.0%
! TTTGAGTTTACATCGTTGGT+TGG - chr2_2:15982148-15982167 None:intergenic 35.0%
! GATTGATTGTTTCTCACGTT+TGG - chr2_2:15982284-15982303 None:intergenic 35.0%
CAGTTGAGAAAACCAAAAGA+AGG + chr2_2:15982371-15982390 Msa0240630:CDS 35.0%
TCACCATTCACTATCAAATG+TGG - chr2_2:15982445-15982464 None:intergenic 35.0%
TGAATGGTGATCAAAGACAT+TGG + chr2_2:15982455-15982474 Msa0240630:CDS 35.0%
GAATGGTGATCAAAGACATT+GGG + chr2_2:15982456-15982475 Msa0240630:CDS 35.0%
AATGGTGATCAAAGACATTG+GGG + chr2_2:15982457-15982476 Msa0240630:CDS 35.0%
! TTGTATATTGCTGGTTGGAT+TGG + chr2_2:15982508-15982527 Msa0240630:CDS 35.0%
! TGTATATTGCTGGTTGGATT+GGG + chr2_2:15982509-15982528 Msa0240630:CDS 35.0%
AAAACCAATCTAGAAGCAAG+TGG - chr2_2:15982610-15982629 None:intergenic 35.0%
!!! GCTTCTAGATTGGTTTTTAG+AGG + chr2_2:15982613-15982632 Msa0240630:CDS 35.0%
TCCGTACCTTTAGTATTTGA+AGG + chr2_2:15982907-15982926 Msa0240630:intron 35.0%
AGAGAGGATGATATTGATCA+AGG + chr2_2:15983409-15983428 Msa0240630:CDS 35.0%
ATGATATTGATCAAGGTTGC+AGG + chr2_2:15983416-15983435 Msa0240630:CDS 35.0%
! GGGTGAAGCTTATTAATTTG+TGG - chr2_2:15983662-15983681 None:intergenic 35.0%
!!! TAGTTTTGGTCTTAGGGTTG+AGG - chr2_2:15982068-15982087 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG - chr2_2:15982138-15982157 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG - chr2_2:15982252-15982271 None:intergenic 40.0%
TGTTCCACTTGCTTCTAGAT+TGG + chr2_2:15982603-15982622 Msa0240630:CDS 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG + chr2_2:15982623-15982642 Msa0240630:CDS 40.0%
AACTCTCTGTAAGCAGCAAT+AGG - chr2_2:15982649-15982668 None:intergenic 40.0%
GCTTACAGAGAGTTGTTGAA+TGG + chr2_2:15982655-15982674 Msa0240630:CDS 40.0%
TTGCAATCGTGACTTTGTGT+TGG + chr2_2:15983356-15983375 Msa0240630:intron 40.0%
! TGGTGATTTTCAGACAAGAG+AGG + chr2_2:15983393-15983412 Msa0240630:intron 40.0%
TATTGATCAAGGTTGCAGGA+AGG + chr2_2:15983420-15983439 Msa0240630:CDS 40.0%
ATTGATCAAGGTTGCAGGAA+GGG + chr2_2:15983421-15983440 Msa0240630:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG + chr2_2:15983469-15983488 Msa0240630:CDS 40.0%
CAAGGAGAGGAGTGATTTAA+GGG + chr2_2:15983737-15983756 Msa0240630:three_prime_UTR 40.0%
!!! TAGTTTTGGTCTTAGGGTTG+AGG - chr2_2:15982068-15982087 None:intergenic 40.0%
!!! CATCGTTGGTTGGTTTTTCT+TGG - chr2_2:15982138-15982157 None:intergenic 40.0%
TTGATTCTCTGCATGGTGTT+AGG - chr2_2:15982252-15982271 None:intergenic 40.0%
TGTTCCACTTGCTTCTAGAT+TGG + chr2_2:15982603-15982622 Msa0240630:CDS 40.0%
!! TGGTTTTTAGAGGGTTCAGT+TGG + chr2_2:15982623-15982642 Msa0240630:CDS 40.0%
AACTCTCTGTAAGCAGCAAT+AGG - chr2_2:15982649-15982668 None:intergenic 40.0%
GCTTACAGAGAGTTGTTGAA+TGG + chr2_2:15982655-15982674 Msa0240630:CDS 40.0%
TTGCAATCGTGACTTTGTGT+TGG + chr2_2:15983356-15983375 Msa0240630:intron 40.0%
! TGGTGATTTTCAGACAAGAG+AGG + chr2_2:15983393-15983412 Msa0240630:intron 40.0%
TATTGATCAAGGTTGCAGGA+AGG + chr2_2:15983420-15983439 Msa0240630:CDS 40.0%
ATTGATCAAGGTTGCAGGAA+GGG + chr2_2:15983421-15983440 Msa0240630:CDS 40.0%
!! TTGTTGACTCATTGTGTGGA+TGG + chr2_2:15983469-15983488 Msa0240630:CDS 40.0%
CAAGGAGAGGAGTGATTTAA+GGG + chr2_2:15983737-15983756 Msa0240630:three_prime_UTR 40.0%
!! TTTGGTCTTAGGGTTGAGGT+GGG - chr2_2:15982064-15982083 None:intergenic 45.0%
!!! TTTTGGTCTTAGGGTTGAGG+TGG - chr2_2:15982065-15982084 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG - chr2_2:15982123-15982142 None:intergenic 45.0%
!! GGAAAGCAAGGTTTGTTGTG+TGG + chr2_2:15982406-15982425 Msa0240630:CDS 45.0%
! ATATTGCTGGTTGGATTGGG+TGG + chr2_2:15982512-15982531 Msa0240630:CDS 45.0%
! TATTGCTGGTTGGATTGGGT+GGG + chr2_2:15982513-15982532 Msa0240630:CDS 45.0%
GAATGGTGAACTCATTGCCA+AGG + chr2_2:15982672-15982691 Msa0240630:CDS 45.0%
GAAGGGTGATTATGAGAGGA+GGG + chr2_2:15983438-15983457 Msa0240630:CDS 45.0%
GCAAGGAGAGGAGTGATTTA+AGG + chr2_2:15983736-15983755 Msa0240630:three_prime_UTR 45.0%
!! TTTGGTCTTAGGGTTGAGGT+GGG - chr2_2:15982064-15982083 None:intergenic 45.0%
!!! TTTTGGTCTTAGGGTTGAGG+TGG - chr2_2:15982065-15982084 None:intergenic 45.0%
!! TTTCTTGGTTTGTGCTGCAG+TGG - chr2_2:15982123-15982142 None:intergenic 45.0%
!! GGAAAGCAAGGTTTGTTGTG+TGG + chr2_2:15982406-15982425 Msa0240630:CDS 45.0%
! ATATTGCTGGTTGGATTGGG+TGG + chr2_2:15982512-15982531 Msa0240630:CDS 45.0%
! TATTGCTGGTTGGATTGGGT+GGG + chr2_2:15982513-15982532 Msa0240630:CDS 45.0%
GAATGGTGAACTCATTGCCA+AGG + chr2_2:15982672-15982691 Msa0240630:CDS 45.0%
GAAGGGTGATTATGAGAGGA+GGG + chr2_2:15983438-15983457 Msa0240630:CDS 45.0%
GCAAGGAGAGGAGTGATTTA+AGG + chr2_2:15983736-15983755 Msa0240630:three_prime_UTR 45.0%
! TCTTAGGGTTGAGGTGGGTT+TGG - chr2_2:15982059-15982078 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG - chr2_2:15982113-15982132 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG - chr2_2:15982248-15982267 None:intergenic 50.0%
ATCCCTCAAGCTTTACGCTC+CGG + chr2_2:15982318-15982337 Msa0240630:CDS 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG + chr2_2:15982415-15982434 Msa0240630:CDS 50.0%
TGGGGTGAGTTTATCACTCC+AGG + chr2_2:15982475-15982494 Msa0240630:intron 50.0%
GGGGTGAGTTTATCACTCCA+GGG + chr2_2:15982476-15982495 Msa0240630:intron 50.0%
GCAGGAAGGGTGATTATGAG+AGG + chr2_2:15983434-15983453 Msa0240630:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG + chr2_2:15983437-15983456 Msa0240630:CDS 50.0%
! TCTTAGGGTTGAGGTGGGTT+TGG - chr2_2:15982059-15982078 None:intergenic 50.0%
TGTGCTGCAGTGGATGATGT+TGG - chr2_2:15982113-15982132 None:intergenic 50.0%
! TTCTCTGCATGGTGTTAGGC+CGG - chr2_2:15982248-15982267 None:intergenic 50.0%
ATCCCTCAAGCTTTACGCTC+CGG + chr2_2:15982318-15982337 Msa0240630:CDS 50.0%
!! GGTTTGTTGTGTGGTGCTGA+TGG + chr2_2:15982415-15982434 Msa0240630:CDS 50.0%
TGGGGTGAGTTTATCACTCC+AGG + chr2_2:15982475-15982494 Msa0240630:intron 50.0%
GGGGTGAGTTTATCACTCCA+GGG + chr2_2:15982476-15982495 Msa0240630:intron 50.0%
GCAGGAAGGGTGATTATGAG+AGG + chr2_2:15983434-15983453 Msa0240630:CDS 50.0%
GGAAGGGTGATTATGAGAGG+AGG + chr2_2:15983437-15983456 Msa0240630:CDS 50.0%
! GTGGGTTTGGAGAGGTTGGT+TGG - chr2_2:15982046-15982065 None:intergenic 55.0%
! TGAGGTGGGTTTGGAGAGGT+TGG - chr2_2:15982050-15982069 None:intergenic 55.0%
! TGGTGTTAGGCCGGAGATGT+CGG - chr2_2:15982239-15982258 None:intergenic 55.0%
GTCCGGAGCGTAAAGCTTGA+GGG - chr2_2:15982323-15982342 None:intergenic 55.0%
TGTCCGGAGCGTAAAGCTTG+AGG - chr2_2:15982324-15982343 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG - chr2_2:15982352-15982371 None:intergenic 55.0%
! GTGGGTTTGGAGAGGTTGGT+TGG - chr2_2:15982046-15982065 None:intergenic 55.0%
! TGAGGTGGGTTTGGAGAGGT+TGG - chr2_2:15982050-15982069 None:intergenic 55.0%
! TGGTGTTAGGCCGGAGATGT+CGG - chr2_2:15982239-15982258 None:intergenic 55.0%
GTCCGGAGCGTAAAGCTTGA+GGG - chr2_2:15982323-15982342 None:intergenic 55.0%
TGTCCGGAGCGTAAAGCTTG+AGG - chr2_2:15982324-15982343 None:intergenic 55.0%
!!! GTTGCTTTTATGGCCAGCGC+TGG - chr2_2:15982352-15982371 None:intergenic 55.0%
! GGGTTGAGGTGGGTTTGGAG+AGG - chr2_2:15982054-15982073 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG - chr2_2:15982210-15982229 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG + chr2_2:15982517-15982536 Msa0240630:CDS 60.0%
!! GTTGGATTGGGTGGGTTGGC+AGG + chr2_2:15982521-15982540 Msa0240630:CDS 60.0%
! GGGTTGAGGTGGGTTTGGAG+AGG - chr2_2:15982054-15982073 None:intergenic 60.0%
! CGGGGAGTGGTGATGAGATG+AGG - chr2_2:15982210-15982229 None:intergenic 60.0%
! GCTGGTTGGATTGGGTGGGT+TGG + chr2_2:15982517-15982536 Msa0240630:CDS 60.0%
!! GTTGGATTGGGTGGGTTGGC+AGG + chr2_2:15982521-15982540 Msa0240630:CDS 60.0%
ATGTCGGCGACAGCGGGGAG+TGG - chr2_2:15982223-15982242 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG - chr2_2:15982228-15982247 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG - chr2_2:15982229-15982248 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG + chr2_2:15982226-15982245 Msa0240630:intron 70.0%
GCCGGAGATGTCGGCGACAG+CGG - chr2_2:15982230-15982249 None:intergenic 70.0%
ATGTCGGCGACAGCGGGGAG+TGG - chr2_2:15982223-15982242 None:intergenic 70.0%
CGGAGATGTCGGCGACAGCG+GGG - chr2_2:15982228-15982247 None:intergenic 70.0%
CCGGAGATGTCGGCGACAGC+GGG - chr2_2:15982229-15982248 None:intergenic 70.0%
CCCGCTGTCGCCGACATCTC+CGG + chr2_2:15982226-15982245 Msa0240630:intron 70.0%
GCCGGAGATGTCGGCGACAG+CGG - chr2_2:15982230-15982249 None:intergenic 70.0%
TCCGGACAGCGCTCCAGCGC+TGG + chr2_2:15982336-15982355 Msa0240630:CDS 75.0%
!! GCCAGCGCTGGAGCGCTGTC+CGG - chr2_2:15982340-15982359 None:intergenic 75.0%
TCCGGACAGCGCTCCAGCGC+TGG + chr2_2:15982336-15982355 Msa0240630:CDS 75.0%
!! GCCAGCGCTGGAGCGCTGTC+CGG - chr2_2:15982340-15982359 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 15982028 15983837 15982028 ID=Msa0240630;Name=Msa0240630
chr2_2 mRNA 15982028 15983837 15982028 ID=Msa0240630-mRNA-1;Parent=Msa0240630;Name=Msa0240630-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0.25|1|0|0|4|315|235
chr2_2 exon 15982028 15982231 15982028 ID=Msa0240630-mRNA-1:exon:6503;Parent=Msa0240630-mRNA-1
chr2_2 exon 15982292 15982478 15982292 ID=Msa0240630-mRNA-1:exon:6504;Parent=Msa0240630-mRNA-1
chr2_2 exon 15982497 15982696 15982497 ID=Msa0240630-mRNA-1:exon:6505;Parent=Msa0240630-mRNA-1
chr2_2 exon 15983406 15983837 15983406 ID=Msa0240630-mRNA-1:exon:6506;Parent=Msa0240630-mRNA-1
chr2_2 CDS 15982028 15982231 15982028 ID=Msa0240630-mRNA-1:cds;Parent=Msa0240630-mRNA-1
chr2_2 CDS 15982292 15982478 15982292 ID=Msa0240630-mRNA-1:cds;Parent=Msa0240630-mRNA-1
chr2_2 CDS 15982497 15982696 15982497 ID=Msa0240630-mRNA-1:cds;Parent=Msa0240630-mRNA-1
chr2_2 CDS 15983406 15983522 15983406 ID=Msa0240630-mRNA-1:cds;Parent=Msa0240630-mRNA-1
chr2_2 three_prime_UTR 15983523 15983837 15983523 ID=Msa0240630-mRNA-1:three_prime_utr;Parent=Msa0240630-mRNA-1
Gene Sequence

>Msa0240630

ATGTCTCTAACAATTCCAACCAACCTCTCCAAACCCACCTCAACCCTAAGACCAAAACTACCTCATAAACCAAAACTCTCAACCAACATCATCCACTGCAGCACAAACCAAGAAAAACCAACCAACGATGTAAACTCAAATCTAAAAGCATTCTCAGCTGCACTAGCACTCTCATCAATCCTCATCTCATCACCACTCCCCGCTAAACAATCAATCAAAAAGCTTGAATCATCCCTCAAGCTTTACGCTCCGGACAGCGCTCCAGCGCTGGCCATAAAAGCAACAGTTGAGAAAACCAAAAGAAGGTTTGATAACTATGGAAAGCAAGGTTTGTTGTGTGGTGCTGATGGTTTACCACATTTGATAGTGAATGGTGATCAAAGACATTGGGGGATATTGTTTTTGTATATTGCTGGTTGGATTGGGTGGGTTGGCAGGAGTTACTTGATTGCTATTCGTGATGAGAAGAAACCTACTCAGAAAGAGATTATTATTGATGTTCCACTTGCTTCTAGATTGGTTTTTAGAGGGTTCAGTTGGCCTATTGCTGCTTACAGAGAGTTGTTGAATGGTGAACTCATTGCCAAGGATACAAGAGAGGATGATATTGATCAAGGTTGCAGGAAGGGTGATTATGAGAGGAGGGTGCTTTTATTGTTGACTCATTGTGTGGATGGATCTTATAATATTTATGCTCTCAAATTGTAA

Protein sequence

>Msa0240630

MSLTIPTNLSKPTSTLRPKLPHKPKLSTNIIHCSTNQEKPTNDVNSNLKAFSAALALSSILISSPLPAKQSIKKLESSLKLYAPDSAPALAIKATVEKTKRRFDNYGKQGLLCGADGLPHLIVNGDQRHWGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFSWPIAAYRELLNGELIAKDTREDDIDQGCRKGDYERRVLLLLTHCVDGSYNIYALKL*