AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0628900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628900 MtrunA17_Chr4g0004811 97.241 145 3 1 1 144 1 145 8.71e-97 275
Msa0628900 MtrunA17_Chr7g0276381 35.664 143 84 1 10 144 35 177 3.18e-26 97.8
Msa0628900 MtrunA17_Chr8g0345861 42.276 123 68 2 25 144 46 168 5.32e-26 97.1
Msa0628900 MtrunA17_Chr5g0412411 43.243 74 42 0 71 144 110 183 1.89e-16 72.4
Msa0628900 MtrunA17_Chr7g0275281 31.783 129 72 1 32 144 31 159 5.17e-16 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628900 AT1G52220.1 60.000 155 51 1 1 144 1 155 1.27e-57 177
Msa0628900 AT1G52220.2 59.355 155 51 2 1 144 1 154 3.62e-55 171
Msa0628900 AT1G52220.4 52.448 143 51 3 1 126 1 143 6.05e-39 129
Msa0628900 AT1G52220.3 45.161 155 45 2 1 144 1 126 1.39e-32 112
Msa0628900 AT2G46820.2 48.276 87 45 0 58 144 86 172 5.43e-27 99.8
Msa0628900 AT2G46820.1 48.276 87 45 0 58 144 86 172 5.43e-27 99.8
Msa0628900 AT4G01150.1 33.663 101 67 0 44 144 62 162 1.39e-16 72.8
Msa0628900 AT4G38100.1 35.714 70 43 1 75 144 122 189 2.54e-11 59.3
Msa0628900 AT4G38100.2 35.714 70 43 1 75 144 82 149 3.46e-11 58.2

Find 56 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAGAAACAGAGAAATTT+TGG 0.146035 4_3:+9657293 None:intergenic
CCGATCAGTTCCAACGAAAT+TGG 0.154903 4_3:+9655612 None:intergenic
GCTTATATCATTGACTTAAA+TGG 0.181879 4_3:-9657383 Msa0628900:exon
CCATTTGTTGTGAAGGCTTC+TGG 0.198643 4_3:-9656428 Msa0628900:CDS
TAAGAGGTTATCTCACTATT+AGG 0.208985 4_3:+9654085 None:intergenic
TTTGTGCTTTCCTATTTATT+TGG 0.215918 4_3:+9657735 None:intergenic
GTTCCCTGGAAATGAGTTTC+TGG 0.249837 4_3:+9657318 None:intergenic
CCTAACCATACCAAATAAAT+AGG 0.269262 4_3:-9657745 None:intergenic
AAATCAACTTCAGATATCTT+TGG 0.272051 4_3:-9654411 Msa0628900:CDS
CTTCAGTTCATTTATGTACT+TGG 0.273513 4_3:+9654293 None:intergenic
TTCTCTGTTTCTCTTCTTCC+AGG 0.283501 4_3:-9657286 Msa0628900:intron
ATTTCGGCAGCACATCTTAC+TGG 0.297914 4_3:+9654387 None:intergenic
GAGGACCGGTTAGGACTATT+TGG 0.304471 4_3:-9656230 Msa0628900:CDS
TGCAGCTGTAGTAGCACTTT+GGG 0.320376 4_3:-9656198 Msa0628900:CDS
CGGTTAGGACTATTTGGTTT+GGG 0.326107 4_3:-9656224 Msa0628900:CDS
CACATTCTAGAGTAATATTT+CGG 0.328221 4_3:+9654371 None:intergenic
TCCAACGAAATTGGGATAAC+TGG 0.346823 4_3:+9655621 None:intergenic
AAGTTGATTTGTTCAAGATT+TGG 0.346842 4_3:+9654424 None:intergenic
AATCAACTTCAGATATCTTT+GGG 0.354405 4_3:-9654410 Msa0628900:CDS
CCGGTTAGGACTATTTGGTT+TGG 0.357509 4_3:-9656225 Msa0628900:CDS
CATGCCAGAAACTCATTTCC+AGG 0.363861 4_3:-9657322 Msa0628900:CDS
CGATCAGTTCCAACGAAATT+GGG 0.380906 4_3:+9655613 None:intergenic
TGGTGGCAAGCTTGCAATAA+TGG 0.403458 4_3:+9657357 None:intergenic
CCAGAAGCCTTCACAACAAA+TGG 0.404317 4_3:+9656428 None:intergenic
GCTTTCCTATTTATTTGGTA+TGG 0.406013 4_3:+9657740 None:intergenic
AAGAGGTTATCTCACTATTA+GGG 0.418514 4_3:+9654086 None:intergenic
TTGCAGCTGTAGTAGCACTT+TGG 0.420908 4_3:-9656199 Msa0628900:CDS
GATATAAATGCTTACCGGTC+AGG 0.421505 4_3:+9655216 None:intergenic
AATAAATAGGAAAGCACAAA+AGG 0.458701 4_3:-9657732 Msa0628900:five_prime_UTR
GCCAGTTATCCCAATTTCGT+TGG 0.462537 4_3:-9655622 Msa0628900:CDS
CCTTTGGGTTGCTCTACTGC+TGG 0.463016 4_3:+9657593 None:intergenic
AAAGTTTGCTATATAGTGAC+AGG 0.474952 4_3:+9654157 None:intergenic
CTTGGATTGTAATTTGACAT+AGG 0.481707 4_3:+9654311 None:intergenic
ATCTCTTATTCAAGCCTGAC+CGG 0.490702 4_3:-9655230 Msa0628900:intron
AATAGTCCTAACCGGTCCTC+AGG 0.492618 4_3:+9656233 None:intergenic
TCAGCATGAGGTCACATAAG+AGG 0.498524 4_3:+9654069 None:intergenic
GATAACTGGCAATTTGTCAA+TGG 0.502698 4_3:+9655635 None:intergenic
TAACGTTCCATTTGTTGTGA+AGG 0.517813 4_3:-9656435 Msa0628900:CDS
CCAAACCAAATAGTCCTAAC+CGG 0.525229 4_3:+9656225 None:intergenic
CCAATTTCGTTGGAACTGAT+CGG 0.531466 4_3:-9655612 Msa0628900:CDS
GATAAACCTGAGGACCGGTT+AGG 0.533709 4_3:-9656239 Msa0628900:CDS
CAGCAGTAGAGCAACCCAAA+GGG 0.540980 4_3:-9657592 Msa0628900:intron
TACTTAACTTCATTAAGTCA+AGG 0.557983 4_3:+9654123 None:intergenic
CTGGAAATGAGTTTCTGGCA+TGG 0.596378 4_3:+9657323 None:intergenic
CTTGAATAAGAGATAGCGAT+AGG 0.600486 4_3:+9655239 None:intergenic
GGCATCAACAAATTTGATAG+CGG 0.622136 4_3:-9656177 Msa0628900:intron
CCAGCAGTAGAGCAACCCAA+AGG 0.624055 4_3:-9657593 Msa0628900:intron
ATGCCAGAAACTCATTTCCA+GGG 0.632871 4_3:-9657321 Msa0628900:CDS
GCATGGAGCAACAATGGTGG+TGG 0.636455 4_3:+9657340 None:intergenic
TGTACACAAAGTTAACACAA+TGG 0.636844 4_3:+9654263 None:intergenic
AGTGGGATAAACCTGAGGAC+CGG 0.646928 4_3:-9656244 Msa0628900:CDS
TTTCTGGCATGGAGCAACAA+TGG 0.669036 4_3:+9657334 None:intergenic
AGCAGTAGAGCAACCCAAAG+GGG 0.686258 4_3:-9657591 Msa0628900:intron
ACTGCTGGAAATGATGAGTG+AGG 0.708064 4_3:+9657608 None:intergenic
CTGGCATGGAGCAACAATGG+TGG 0.716475 4_3:+9657337 None:intergenic
CAAACAGTGGGATAAACCTG+AGG 0.735011 4_3:-9656249 Msa0628900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTATTTTATTTTTTG+TGG - chr4_3:9654148-9654167 Msa0628900:three_prime_UTR 10.0%
!!! TCAATTTTCTTAATTATTAT+CGG - chr4_3:9654795-9654814 Msa0628900:intron 10.0%
!!! TTAAAGACTATTTTTTTTAT+GGG + chr4_3:9656110-9656129 None:intergenic 10.0%
!!! ATTAAAGACTATTTTTTTTA+TGG + chr4_3:9656111-9656130 None:intergenic 10.0%
!!! TTATATCATTGACTTAAATT+TGG - chr4_3:9654317-9654336 Msa0628900:three_prime_UTR 15.0%
!!! TAAAGACTATTTTTTTTATG+GGG + chr4_3:9656109-9656128 None:intergenic 15.0%
!! CAAGTATTAAGAAAAAAATA+CGG + chr4_3:9656297-9656316 None:intergenic 15.0%
!!! ATTATAGTTTCTCTAATTTT+TGG + chr4_3:9656418-9656437 None:intergenic 15.0%
!! AGATACTAACAAGAATTAAA+AGG + chr4_3:9654295-9654314 None:intergenic 20.0%
!! AAGTATGACATTGTTTAAAA+CGG - chr4_3:9654696-9654715 Msa0628900:intron 20.0%
!! TGCTTGAACTAATTAAAAAT+TGG - chr4_3:9654901-9654920 Msa0628900:intron 20.0%
!! TTGAACTAATTAAAAATTGG+CGG - chr4_3:9654904-9654923 Msa0628900:intron 20.0%
!! AAAAAATGAGATAAAGTGTA+AGG + chr4_3:9655789-9655808 None:intergenic 20.0%
!! ATTTACATTAGGATTTCTTT+GGG + chr4_3:9655932-9655951 None:intergenic 20.0%
!!! AAAGACTATTTTTTTTATGG+GGG + chr4_3:9656108-9656127 None:intergenic 20.0%
!! AGAAAAAATCAAAATCAGAA+TGG + chr4_3:9656146-9656165 None:intergenic 20.0%
!! AAATAATGTATAAACTCATG+AGG - chr4_3:9656261-9656280 Msa0628900:intron 20.0%
!!! AATTTATTTTTCTGTTTCAG+TGG - chr4_3:9656554-9656573 Msa0628900:intron 20.0%
!!! TTTCTTTTCTGTAATTACTA+TGG + chr4_3:9656751-9656770 None:intergenic 20.0%
!! AAACAAAAACTATTTCAAAC+AGG + chr4_3:9656916-9656935 None:intergenic 20.0%
!!! TGAAATAGTTTTTGTTTTCA+AGG - chr4_3:9656919-9656938 Msa0628900:intron 20.0%
!!! GAAATAGTTTTTGTTTTCAA+GGG - chr4_3:9656920-9656939 Msa0628900:intron 20.0%
! TTTGTGCTTTCCTATTTATT+TGG + chr4_3:9654088-9654107 None:intergenic 25.0%
!! AATAAATAGGAAAGCACAAA+AGG - chr4_3:9654088-9654107 Msa0628900:three_prime_UTR 25.0%
! AAATAAAACAATACCCCTTT+GGG + chr4_3:9654245-9654264 None:intergenic 25.0%
!!! AAAGAGCAAATTTTAGTTCA+TGG + chr4_3:9654347-9654366 None:intergenic 25.0%
!!! GCTTATATCATTGACTTAAA+TGG - chr4_3:9654437-9654456 Msa0628900:CDS 25.0%
!! AGTATGACATTGTTTAAAAC+GGG - chr4_3:9654697-9654716 Msa0628900:intron 25.0%
! ATCAACTGTACAAAATTTCA+GGG + chr4_3:9655162-9655181 None:intergenic 25.0%
!! TCACATGCAACATTTTTAAT+TGG + chr4_3:9655206-9655225 None:intergenic 25.0%
! TAAAAAAAGACGAAAACGAT+GGG + chr4_3:9655497-9655516 None:intergenic 25.0%
! TTAAAAAAAGACGAAAACGA+TGG + chr4_3:9655498-9655517 None:intergenic 25.0%
! CAAAAAACAAACAGAAACTT+AGG + chr4_3:9655539-9655558 None:intergenic 25.0%
! GATTTACATTAGGATTTCTT+TGG + chr4_3:9655933-9655952 None:intergenic 25.0%
! AAAATTAATGTCACCAATGT+CGG + chr4_3:9656043-9656062 None:intergenic 25.0%
! AATAGCTAGTATGTTTACAA+AGG + chr4_3:9656068-9656087 None:intergenic 25.0%
!! TTCTGTGATATTTTGTGTAT+AGG - chr4_3:9656162-9656181 Msa0628900:intron 25.0%
!!! TTTCTCTAATTTTTGGAACA+GGG + chr4_3:9656411-9656430 None:intergenic 25.0%
!!! GATGAATTGATGGATTAATT+TGG - chr4_3:9656507-9656526 Msa0628900:intron 25.0%
! AAAGTGATATAAATGCTTAC+CGG + chr4_3:9656612-9656631 None:intergenic 25.0%
! GAAAGAGAAAATTAGTATCA+AGG - chr4_3:9656711-9656730 Msa0628900:intron 25.0%
! TCAATAAGGGAAAAATATAG+TGG + chr4_3:9657063-9657082 None:intergenic 25.0%
! AACTGAGAAGATATCAATAA+GGG + chr4_3:9657076-9657095 None:intergenic 25.0%
! TACTTGAATGTTATTGATAC+AGG - chr4_3:9657362-9657381 Msa0628900:CDS 25.0%
! ACTTGAATGTTATTGATACA+GGG - chr4_3:9657363-9657382 Msa0628900:CDS 25.0%
!!! AAGTTGATTTGTTCAAGATT+TGG + chr4_3:9657399-9657418 None:intergenic 25.0%
! AAATCAACTTCAGATATCTT+TGG - chr4_3:9657409-9657428 Msa0628900:intron 25.0%
! AATCAACTTCAGATATCTTT+GGG - chr4_3:9657410-9657429 Msa0628900:intron 25.0%
!!! CACATTCTAGAGTAATATTT+CGG + chr4_3:9657452-9657471 None:intergenic 25.0%
! TACTTAACTTCATTAAGTCA+AGG + chr4_3:9657700-9657719 None:intergenic 25.0%
GCTTTCCTATTTATTTGGTA+TGG + chr4_3:9654083-9654102 None:intergenic 30.0%
! TTTTTGTGGTTCACATTCTT+TGG - chr4_3:9654162-9654181 Msa0628900:three_prime_UTR 30.0%
GAAATAAAACAATACCCCTT+TGG + chr4_3:9654246-9654265 None:intergenic 30.0%
! GAAGAGAAACAGAGAAATTT+TGG + chr4_3:9654530-9654549 None:intergenic 30.0%
AAAAGAACAAAGCCAGTAAA+GGG + chr4_3:9654563-9654582 None:intergenic 30.0%
AAAAAGAACAAAGCCAGTAA+AGG + chr4_3:9654564-9654583 None:intergenic 30.0%
! GTATGACATTGTTTAAAACG+GGG - chr4_3:9654698-9654717 Msa0628900:intron 30.0%
!!! ACCATGTTTTTTTACACAAG+TGG - chr4_3:9655003-9655022 Msa0628900:intron 30.0%
TCAACTGTACAAAATTTCAG+GGG + chr4_3:9655161-9655180 None:intergenic 30.0%
CATCAACTGTACAAAATTTC+AGG + chr4_3:9655163-9655182 None:intergenic 30.0%
AGTGGAAGTAATCAAATCAA+TGG + chr4_3:9655286-9655305 None:intergenic 30.0%
! ATTCCTGATTTTCAATCACA+GGG - chr4_3:9655354-9655373 Msa0628900:intron 30.0%
TTTGTTGATGTTCAAACAGT+GGG - chr4_3:9655559-9655578 Msa0628900:intron 30.0%
!! AGAATTTTAACCGAACGTTA+AGG - chr4_3:9655713-9655732 Msa0628900:intron 30.0%
!! TATTTTGCTTCCACTGATTA+AGG - chr4_3:9655848-9655867 Msa0628900:intron 30.0%
CACTAACACAGATTTACATT+AGG + chr4_3:9655943-9655962 None:intergenic 30.0%
TTAATCGACCTTGAAATACT+CGG + chr4_3:9655989-9656008 None:intergenic 30.0%
TGTAAACATACTAGCTATTG+AGG - chr4_3:9656069-9656088 Msa0628900:intron 30.0%
ATCAAAATCAGAATGGAAGA+GGG + chr4_3:9656139-9656158 None:intergenic 30.0%
AATCAAAATCAGAATGGAAG+AGG + chr4_3:9656140-9656159 None:intergenic 30.0%
GTTCACAAGTGAGTATTATT+TGG + chr4_3:9656367-9656386 None:intergenic 30.0%
!!! TTCTCTAATTTTTGGAACAG+GGG + chr4_3:9656410-9656429 None:intergenic 30.0%
!!! GTTTCTCTAATTTTTGGAAC+AGG + chr4_3:9656412-9656431 None:intergenic 30.0%
TGCAAACACAAAAACAAAGT+CGG + chr4_3:9656477-9656496 None:intergenic 30.0%
!!! TTTGTTTTTGTGTTTGCAAG+AGG - chr4_3:9656479-9656498 Msa0628900:intron 30.0%
!!! TTGTTTTTGTGTTTGCAAGA+GGG - chr4_3:9656480-9656499 Msa0628900:intron 30.0%
TTGAGAAGAGAGAAGAATAA+GGG - chr4_3:9656890-9656909 Msa0628900:intron 30.0%
! TTTTTCTCTCGCTAGTTATT+TGG + chr4_3:9657000-9657019 None:intergenic 30.0%
GAACTGAGAAGATATCAATA+AGG + chr4_3:9657077-9657096 None:intergenic 30.0%
TTTATTTCATACAACATGCG+AGG + chr4_3:9657218-9657237 None:intergenic 30.0%
!! TTTTAAGTGCAGATTATCAG+CGG - chr4_3:9657473-9657492 Msa0628900:intron 30.0%
CTTGGATTGTAATTTGACAT+AGG + chr4_3:9657512-9657531 None:intergenic 30.0%
CTTCAGTTCATTTATGTACT+TGG + chr4_3:9657530-9657549 None:intergenic 30.0%
TGTACACAAAGTTAACACAA+TGG + chr4_3:9657560-9657579 None:intergenic 30.0%
!! AAAGTTTGCTATATAGTGAC+AGG + chr4_3:9657666-9657685 None:intergenic 30.0%
AAGAGGTTATCTCACTATTA+GGG + chr4_3:9657737-9657756 None:intergenic 30.0%
TAAGAGGTTATCTCACTATT+AGG + chr4_3:9657738-9657757 None:intergenic 30.0%
! ATGAAGCACTAACACAAACA+CGG + chr4_3:9654829-9654848 None:intergenic 35.0%
TGTTTGTGTTAGTGCTTCAT+AGG - chr4_3:9654829-9654848 Msa0628900:intron 35.0%
GCCACTTGTGTAAAAAAACA+TGG + chr4_3:9655007-9655026 None:intergenic 35.0%
ATAGTTAGTTCAAGCACCAA+GGG + chr4_3:9655098-9655117 None:intergenic 35.0%
TATAGTTAGTTCAAGCACCA+AGG + chr4_3:9655099-9655118 None:intergenic 35.0%
! ATTTCAGGGGGCATATATTA+TGG + chr4_3:9655148-9655167 None:intergenic 35.0%
CAACTGTACAAAATTTCAGG+GGG + chr4_3:9655160-9655179 None:intergenic 35.0%
TCAGGAATCAGGAACATTTA+GGG + chr4_3:9655342-9655361 None:intergenic 35.0%
ATCAGGAATCAGGAACATTT+AGG + chr4_3:9655343-9655362 None:intergenic 35.0%
GTGATTGAAAATCAGGAATC+AGG + chr4_3:9655353-9655372 None:intergenic 35.0%
! GATTCCTGATTTTCAATCAC+AGG - chr4_3:9655353-9655372 Msa0628900:intron 35.0%
!! TAACGTTCCATTTGTTGTGA+AGG - chr4_3:9655385-9655404 Msa0628900:intron 35.0%
! GTTTGTTGATGTTCAAACAG+TGG - chr4_3:9655558-9655577 Msa0628900:intron 35.0%
GGCATCAACAAATTTGATAG+CGG - chr4_3:9655643-9655662 Msa0628900:intron 35.0%
! TCACCAATCTTGCACTATTT+TGG - chr4_3:9655672-9655691 Msa0628900:intron 35.0%
GTTCCAAAATAGTGCAAGAT+TGG + chr4_3:9655678-9655697 None:intergenic 35.0%
CCAAACATAACCTTAACGTT+CGG + chr4_3:9655726-9655745 None:intergenic 35.0%
CGAACGTTAAGGTTATGTTT+GGG - chr4_3:9655724-9655743 Msa0628900:intron 35.0%
! TTAAGGTTATGTTTGGGACA+TGG - chr4_3:9655730-9655749 Msa0628900:intron 35.0%
! TAAGGTTATGTTTGGGACAT+GGG - chr4_3:9655731-9655750 Msa0628900:intron 35.0%
! TTTGGGACATGGGTTTATAA+GGG - chr4_3:9655741-9655760 Msa0628900:intron 35.0%
GAAACTAAAAGAGAAGGGTA+TGG + chr4_3:9655901-9655920 None:intergenic 35.0%
AGGAGGAAACTAAAAGAGAA+GGG + chr4_3:9655906-9655925 None:intergenic 35.0%
TAGGAGGAAACTAAAAGAGA+AGG + chr4_3:9655907-9655926 None:intergenic 35.0%
! ATTAGGATTTCTTTGGGAGT+AGG + chr4_3:9655926-9655945 None:intergenic 35.0%
GATAACTGGCAATTTGTCAA+TGG + chr4_3:9656188-9656207 None:intergenic 35.0%
CTTGAATAAGAGATAGCGAT+AGG + chr4_3:9656584-9656603 None:intergenic 35.0%
GTAGCTAACATCAGACAAAT+TGG + chr4_3:9656643-9656662 None:intergenic 35.0%
AGTACCAAACTTCTTCTCAT+TGG - chr4_3:9656855-9656874 Msa0628900:intron 35.0%
GTTGAGAAGAGAGAAGAATA+AGG - chr4_3:9656889-9656908 Msa0628900:intron 35.0%
! TCTTTTCACAACCAACCATT+TGG - chr4_3:9657103-9657122 Msa0628900:intron 35.0%
GGCTAATGACTAACAACTTA+TGG + chr4_3:9657245-9657264 None:intergenic 35.0%
ATGCCAGAAACTCATTTCCA+GGG - chr4_3:9654499-9654518 Msa0628900:intron 40.0%
!! GAGAAATTTTGGAAGTTCCC+TGG + chr4_3:9654519-9654538 None:intergenic 40.0%
! TTCTCTGTTTCTCTTCTTCC+AGG - chr4_3:9654534-9654553 Msa0628900:intron 40.0%
GTGTCAAAAACCTATGCATG+CGG - chr4_3:9654757-9654776 Msa0628900:intron 40.0%
TTAAATGTAGCCGCATGCAT+AGG + chr4_3:9654770-9654789 None:intergenic 40.0%
! TATGTGGGAGCTTTATGCAT+GGG + chr4_3:9654945-9654964 None:intergenic 40.0%
TGTGCTATACACCAAATGGT+GGG + chr4_3:9654976-9654995 None:intergenic 40.0%
TAGTTAGTTCAAGCACCAAG+GGG + chr4_3:9655097-9655116 None:intergenic 40.0%
TGATGAGCAATGCACTAGTT+TGG - chr4_3:9655178-9655197 Msa0628900:intron 40.0%
! TGCTCATTTTCGAACTTCAG+TGG - chr4_3:9655254-9655273 Msa0628900:intron 40.0%
TGATTACTTCCACTTTCTGC+TGG - chr4_3:9655292-9655311 Msa0628900:intron 40.0%
TCTCCCTGTGATTGAAAATC+AGG + chr4_3:9655360-9655379 None:intergenic 40.0%
! GATTTTCAATCACAGGGAGA+CGG - chr4_3:9655360-9655379 Msa0628900:intron 40.0%
CCAAACCAAATAGTCCTAAC+CGG + chr4_3:9655598-9655617 None:intergenic 40.0%
! CGGTTAGGACTATTTGGTTT+GGG - chr4_3:9655596-9655615 Msa0628900:CDS 40.0%
CCGAACGTTAAGGTTATGTT+TGG - chr4_3:9655723-9655742 Msa0628900:intron 40.0%
! GTTTGGGACATGGGTTTATA+AGG - chr4_3:9655740-9655759 Msa0628900:intron 40.0%
TTGGGACATGGGTTTATAAG+GGG - chr4_3:9655742-9655761 Msa0628900:intron 40.0%
ACATGGGTTTATAAGGGGAA+GGG - chr4_3:9655747-9655766 Msa0628900:intron 40.0%
TATCCAGGATCCTTAATCAG+TGG + chr4_3:9655861-9655880 None:intergenic 40.0%
! AAAGAGAAGGGTATGGACTA+TGG + chr4_3:9655894-9655913 None:intergenic 40.0%
ATCTGTGTTAGTGACATTCC+CGG - chr4_3:9655950-9655969 Msa0628900:intron 40.0%
! GCTTTGAACCGAGTATTTCA+AGG - chr4_3:9655978-9655997 Msa0628900:intron 40.0%
! TCTCAAAGAGTTTTCTCGGT+TGG + chr4_3:9656019-9656038 None:intergenic 40.0%
! CGGTTCTCAAAGAGTTTTCT+CGG + chr4_3:9656023-9656042 None:intergenic 40.0%
! AACTCTTTGAGAACCGACAT+TGG - chr4_3:9656027-9656046 Msa0628900:intron 40.0%
TCCAACGAAATTGGGATAAC+TGG + chr4_3:9656202-9656221 None:intergenic 40.0%
CGATCAGTTCCAACGAAATT+GGG + chr4_3:9656210-9656229 None:intergenic 40.0%
CCAATTTCGTTGGAACTGAT+CGG - chr4_3:9656208-9656227 Msa0628900:CDS 40.0%
! GATCGGAATACTTTTCTCAG+TGG - chr4_3:9656225-9656244 Msa0628900:CDS 40.0%
AGAGGGACTTGATGAATTGA+TGG - chr4_3:9656497-9656516 Msa0628900:intron 40.0%
ATCTCTTATTCAAGCCTGAC+CGG - chr4_3:9656590-9656609 Msa0628900:intron 40.0%
GATATAAATGCTTACCGGTC+AGG + chr4_3:9656607-9656626 None:intergenic 40.0%
AAACCAACCAAAGGGTTAAC+CGG + chr4_3:9656795-9656814 None:intergenic 40.0%
TCTCTCTCAAACCAACCAAA+GGG + chr4_3:9656803-9656822 None:intergenic 40.0%
ATCTCTCTCAAACCAACCAA+AGG + chr4_3:9656804-9656823 None:intergenic 40.0%
GCAACCAATGAGAAGAAGTT+TGG + chr4_3:9656862-9656881 None:intergenic 40.0%
TTTCACAACCAACCATTTGG+AGG - chr4_3:9657106-9657125 Msa0628900:intron 40.0%
AGAATCGAATCCAAACCAGA+GGG - chr4_3:9657133-9657152 Msa0628900:intron 40.0%
! TGGTTTGGAAACAGTTGCAT+TGG - chr4_3:9657167-9657186 Msa0628900:intron 40.0%
! CTGTAAATCTCATTCTGAGG+TGG + chr4_3:9657266-9657285 None:intergenic 40.0%
CCACTGTAAATCTCATTCTG+AGG + chr4_3:9657269-9657288 None:intergenic 40.0%
CCTCAGAATGAGATTTACAG+TGG - chr4_3:9657266-9657285 Msa0628900:intron 40.0%
!!! GTGGTTTTAAGTTCACTAGC+TGG - chr4_3:9657285-9657304 Msa0628900:intron 40.0%
ACTGCTGGAAATGATGAGTG+AGG + chr4_3:9654215-9654234 None:intergenic 45.0%
TGGTGGCAAGCTTGCAATAA+TGG + chr4_3:9654466-9654485 None:intergenic 45.0%
! TTTCTGGCATGGAGCAACAA+TGG + chr4_3:9654489-9654508 None:intergenic 45.0%
!! CTGGAAATGAGTTTCTGGCA+TGG + chr4_3:9654500-9654519 None:intergenic 45.0%
CATGCCAGAAACTCATTTCC+AGG - chr4_3:9654498-9654517 Msa0628900:intron 45.0%
GTTCCCTGGAAATGAGTTTC+TGG + chr4_3:9654505-9654524 None:intergenic 45.0%
TCTTCCAGGTAACCCTTTAC+TGG - chr4_3:9654548-9654567 Msa0628900:intron 45.0%
AAAGCCAGTAAAGGGTTACC+TGG + chr4_3:9654555-9654574 None:intergenic 45.0%
GACACAAGCTTGCATGTGTA+GGG + chr4_3:9654879-9654898 None:intergenic 45.0%
TGACACAAGCTTGCATGTGT+AGG + chr4_3:9654880-9654899 None:intergenic 45.0%
! ATGTGGGAGCTTTATGCATG+GGG + chr4_3:9654944-9654963 None:intergenic 45.0%
! GTATGTGGGAGCTTTATGCA+TGG + chr4_3:9654946-9654965 None:intergenic 45.0%
ATACACAGAGTCCCACCATT+TGG - chr4_3:9654962-9654981 Msa0628900:intron 45.0%
GTGTGCTATACACCAAATGG+TGG + chr4_3:9654977-9654996 None:intergenic 45.0%
GCTGTGTGCTATACACCAAA+TGG + chr4_3:9654980-9654999 None:intergenic 45.0%
AACAGTCACGAGTTCAAGTC+TGG + chr4_3:9655035-9655054 None:intergenic 45.0%
AGTTAGTTCAAGCACCAAGG+GGG + chr4_3:9655096-9655115 None:intergenic 45.0%
CCAGAAGCCTTCACAACAAA+TGG + chr4_3:9655395-9655414 None:intergenic 45.0%
!! CCATTTGTTGTGAAGGCTTC+TGG - chr4_3:9655392-9655411 Msa0628900:intron 45.0%
AAAGACGAAAACGATGGGAG+TGG + chr4_3:9655492-9655511 None:intergenic 45.0%
CAAACAGTGGGATAAACCTG+AGG - chr4_3:9655571-9655590 Msa0628900:intron 45.0%
CCGGTTAGGACTATTTGGTT+TGG - chr4_3:9655595-9655614 Msa0628900:intron 45.0%
TTGCAGCTGTAGTAGCACTT+TGG - chr4_3:9655621-9655640 Msa0628900:CDS 45.0%
TGCAGCTGTAGTAGCACTTT+GGG - chr4_3:9655622-9655641 Msa0628900:CDS 45.0%
GACATGGGTTTATAAGGGGA+AGG - chr4_3:9655746-9655765 Msa0628900:intron 45.0%
! CTTCCACTGATTAAGGATCC+TGG - chr4_3:9655855-9655874 Msa0628900:intron 45.0%
TATGGAGTAGTGGTGTATCC+AGG + chr4_3:9655876-9655895 None:intergenic 45.0%
! AGGATTTCTTTGGGAGTAGG+AGG + chr4_3:9655923-9655942 None:intergenic 45.0%
GCCAGTTATCCCAATTTCGT+TGG - chr4_3:9656198-9656217 Msa0628900:CDS 45.0%
CCGATCAGTTCCAACGAAAT+TGG + chr4_3:9656211-9656230 None:intergenic 45.0%
TATTGCTCGCCTGATTGATC+CGG - chr4_3:9656773-9656792 Msa0628900:intron 45.0%
AAGGGTTAACCGGATCAATC+AGG + chr4_3:9656785-9656804 None:intergenic 45.0%
GATTGATCCGGTTAACCCTT+TGG - chr4_3:9656785-9656804 Msa0628900:intron 45.0%
!! CTGGTTTGGATTCGATTCTG+AGG + chr4_3:9657132-9657151 None:intergenic 45.0%
CAGAATCGAATCCAAACCAG+AGG - chr4_3:9657132-9657151 Msa0628900:intron 45.0%
ACTGTTTCCAAACCAGCCTA+GGG + chr4_3:9657162-9657181 None:intergenic 45.0%
AACTGTTTCCAAACCAGCCT+AGG + chr4_3:9657163-9657182 None:intergenic 45.0%
CATACAACATGCGAGGCAAA+AGG + chr4_3:9657211-9657230 None:intergenic 45.0%
ATTTCGGCAGCACATCTTAC+TGG + chr4_3:9657436-9657455 None:intergenic 45.0%
!!! AATAATCTAAAATTAAATTA+AGG + chr4_3:9654272-9654291 None:intergenic 5.0%
CAGCAGTAGAGCAACCCAAA+GGG - chr4_3:9654228-9654247 Msa0628900:three_prime_UTR 50.0%
AGCAGTAGAGCAACCCAAAG+GGG - chr4_3:9654229-9654248 Msa0628900:three_prime_UTR 50.0%
TGGTGGGACTCTGTGTATGT+GGG + chr4_3:9654960-9654979 None:intergenic 50.0%
! ATGGTGGGACTCTGTGTATG+TGG + chr4_3:9654961-9654980 None:intergenic 50.0%
TAGCACACACCAGCAGAAAG+TGG + chr4_3:9655304-9655323 None:intergenic 50.0%
ACGAAAACGATGGGAGTGGT+AGG + chr4_3:9655488-9655507 None:intergenic 50.0%
AGTGGGATAAACCTGAGGAC+CGG - chr4_3:9655576-9655595 Msa0628900:intron 50.0%
GATAAACCTGAGGACCGGTT+AGG - chr4_3:9655581-9655600 Msa0628900:intron 50.0%
AATAGTCCTAACCGGTCCTC+AGG + chr4_3:9655590-9655609 None:intergenic 50.0%
GAGGACCGGTTAGGACTATT+TGG - chr4_3:9655590-9655609 Msa0628900:intron 50.0%
AAGGGGAAGGGAAGAGCTTA+TGG - chr4_3:9655759-9655778 Msa0628900:intron 50.0%
! GGGTATGGACTATGGAGTAG+TGG + chr4_3:9655886-9655905 None:intergenic 50.0%
ACTCGGTTCAAAGCTAGCAC+CGG + chr4_3:9655972-9655991 None:intergenic 50.0%
GGATCAATCAGGCGAGCAAT+AGG + chr4_3:9656774-9656793 None:intergenic 50.0%
GATCCGGTTAACCCTTTGGT+TGG - chr4_3:9656789-9656808 Msa0628900:intron 50.0%
!! TTCTGAGGCCTCCAAATGGT+TGG + chr4_3:9657117-9657136 None:intergenic 50.0%
!! TCGATTCTGAGGCCTCCAAA+TGG + chr4_3:9657121-9657140 None:intergenic 50.0%
CTGTTTCCAAACCAGCCTAG+GGG + chr4_3:9657161-9657180 None:intergenic 50.0%
!! CCTTTGGGTTGCTCTACTGC+TGG + chr4_3:9654230-9654249 None:intergenic 55.0%
CCAGCAGTAGAGCAACCCAA+AGG - chr4_3:9654227-9654246 Msa0628900:three_prime_UTR 55.0%
GCATGGAGCAACAATGGTGG+TGG + chr4_3:9654483-9654502 None:intergenic 55.0%
CTGGCATGGAGCAACAATGG+TGG + chr4_3:9654486-9654505 None:intergenic 55.0%
TATGCATGGGGCTGTGTGCA+CGG + chr4_3:9654932-9654951 None:intergenic 55.0%
CTCGGTTCAAAGCTAGCACC+GGG + chr4_3:9655971-9655990 None:intergenic 55.0%
ATGCATGGGGCTGTGTGCAC+GGG + chr4_3:9654931-9654950 None:intergenic 60.0%
ACAACTTTACCGCCGCGCCA+AGG - chr4_3:9655068-9655087 Msa0628900:intron 60.0%
CCTAGGGGAACCCTCTGGTT+TGG + chr4_3:9657146-9657165 None:intergenic 60.0%
CCAAACCAGAGGGTTCCCCT+AGG - chr4_3:9657143-9657162 Msa0628900:intron 60.0%
! AGGGTTCCCCTAGGCTGGTT+TGG - chr4_3:9657152-9657171 Msa0628900:intron 60.0%
TGCATGGGGCTGTGTGCACG+GGG + chr4_3:9654930-9654949 None:intergenic 65.0%
CAAGCACCAAGGGGGAGCCT+TGG + chr4_3:9655088-9655107 None:intergenic 65.0%
ACCAGAGGGTTCCCCTAGGC+TGG - chr4_3:9657147-9657166 Msa0628900:intron 65.0%
ACCAGCCTAGGGGAACCCTC+TGG + chr4_3:9657151-9657170 None:intergenic 65.0%
ACCAAGGGGGAGCCTTGGCG+CGG + chr4_3:9655083-9655102 None:intergenic 70.0%
AAGGGGGAGCCTTGGCGCGG+CGG + chr4_3:9655080-9655099 None:intergenic 75.0%
! GCCGCGCCAAGGCTCCCCCT+TGG - chr4_3:9655079-9655098 Msa0628900:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 9654080 9657762 9654080 ID=Msa0628900;Name=Msa0628900
chr4_3 mRNA 9654080 9657762 9654080 ID=Msa0628900-mRNA-1;Parent=Msa0628900;Name=Msa0628900-mRNA-1;_AED=0.05;_eAED=0.05;_QI=193|1|1|1|0.83|0.71|7|297|154
chr4_3 exon 9654080 9654458 9654080 ID=Msa0628900-mRNA-1:exon:2900;Parent=Msa0628900-mRNA-1
chr4_3 exon 9655231 9655268 9655231 ID=Msa0628900-mRNA-1:exon:2899;Parent=Msa0628900-mRNA-1
chr4_3 exon 9655596 9655658 9655596 ID=Msa0628900-mRNA-1:exon:2898;Parent=Msa0628900-mRNA-1
chr4_3 exon 9656178 9656264 9656178 ID=Msa0628900-mRNA-1:exon:2897;Parent=Msa0628900-mRNA-1
chr4_3 exon 9656373 9656467 9656373 ID=Msa0628900-mRNA-1:exon:2896;Parent=Msa0628900-mRNA-1
chr4_3 exon 9657287 9657410 9657287 ID=Msa0628900-mRNA-1:exon:2895;Parent=Msa0628900-mRNA-1
chr4_3 exon 9657594 9657762 9657594 ID=Msa0628900-mRNA-1:exon:2894;Parent=Msa0628900-mRNA-1
chr4_3 five_prime_UTR 9657594 9657762 9657594 ID=Msa0628900-mRNA-1:five_prime_utr;Parent=Msa0628900-mRNA-1
chr4_3 five_prime_UTR 9657387 9657410 9657387 ID=Msa0628900-mRNA-1:five_prime_utr;Parent=Msa0628900-mRNA-1
chr4_3 CDS 9657287 9657386 9657287 ID=Msa0628900-mRNA-1:cds;Parent=Msa0628900-mRNA-1
chr4_3 CDS 9656373 9656467 9656373 ID=Msa0628900-mRNA-1:cds;Parent=Msa0628900-mRNA-1
chr4_3 CDS 9656178 9656264 9656178 ID=Msa0628900-mRNA-1:cds;Parent=Msa0628900-mRNA-1
chr4_3 CDS 9655596 9655658 9655596 ID=Msa0628900-mRNA-1:cds;Parent=Msa0628900-mRNA-1
chr4_3 CDS 9655231 9655268 9655231 ID=Msa0628900-mRNA-1:cds;Parent=Msa0628900-mRNA-1
chr4_3 CDS 9654377 9654458 9654377 ID=Msa0628900-mRNA-1:cds;Parent=Msa0628900-mRNA-1
chr4_3 three_prime_UTR 9654080 9654376 9654080 ID=Msa0628900-mRNA-1:three_prime_utr;Parent=Msa0628900-mRNA-1
Gene Sequence

>Msa0628900

ATGGCTTCCATTATTGCAAGCTTGCCACCACCATTGTTGCTCCATGCCAGAAACTCATTTCCAGGGAACTTCCAAAATTTCTCTGTTTCTCTTCTTCCAGGGAGACGGAGTAACGTTCCATTTGTTGTGAAGGCTTCTGGAGAAAGTTCTGAATCTTCAACTTCACTTACTGTTTTCAAGTCTGTTCAGAATGTTTGGGATAAACCTGAGGACCGGTTAGGACTATTTGGTTTGGGCTTTGCAGCTGTAGTAGCACTTTGGGCATCAACAAATTTGATAGCGGCCATTGACAAATTGCCAGTTATCCCAATTTCGTTGGAACTGATCGGAATACTTTTCTCAGTGTGGTTCACCTATCGCTATCTCTTATTCAAGCCTGACCGGGAAGAACTTTTCCAAATCTTGAACAAATCAACTTCAGATATCTTTGGGCCAGTAAGATGTGCTGCCGAAATATTACTCTAG

Protein sequence

>Msa0628900

MASIIASLPPPLLLHARNSFPGNFQNFSVSLLPGRRSNVPFVVKASGESSESSTSLTVFKSVQNVWDKPEDRLGLFGLGFAAVVALWASTNLIAAIDKLPVIPISLELIGILFSVWFTYRYLLFKPDREELFQILNKSTSDIFGPVRCAAEILL*