Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1116950 | XP_013449695.1 | 92.081 | 442 | 10 | 1 | 1 | 442 | 1 | 417 | 0.0 | 823 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1116950 | A0A072U3I2 | 92.081 | 442 | 10 | 1 | 1 | 442 | 1 | 417 | 0.0 | 823 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0036990 | Msa1116950 | 0.807423 | 5.091726e-50 | -8.615850e-47 |
Msa0039590 | Msa1116950 | 0.851210 | 1.029465e-60 | -8.615850e-47 |
Msa0042500 | Msa1116950 | 0.821932 | 3.104332e-53 | -8.615850e-47 |
Msa0050530 | Msa1116950 | -0.804376 | 2.224954e-49 | -8.615850e-47 |
Msa0053960 | Msa1116950 | 0.804351 | 2.252332e-49 | -8.615850e-47 |
Msa0063850 | Msa1116950 | 0.813793 | 2.137762e-51 | -8.615850e-47 |
Msa0079570 | Msa1116950 | 0.823092 | 1.668650e-53 | -8.615850e-47 |
Msa0091340 | Msa1116950 | 0.821644 | 3.618207e-53 | -8.615850e-47 |
Msa0092390 | Msa1116950 | 0.807988 | 3.861781e-50 | -8.615850e-47 |
Msa0098750 | Msa1116950 | 0.812536 | 4.035235e-51 | -8.615850e-47 |
Msa0116950 | Msa1116950 | 0.806045 | 9.953645e-50 | -8.615850e-47 |
Msa0608790 | Msa1116950 | -0.822695 | 2.064411e-53 | -8.615850e-47 |
Msa0608940 | Msa1116950 | 0.809411 | 1.917184e-50 | -8.615850e-47 |
Msa0612880 | Msa1116950 | 0.838688 | 2.479092e-57 | -8.615850e-47 |
Msa0612890 | Msa1116950 | 0.822426 | 2.384093e-53 | -8.615850e-47 |
Msa0625900 | Msa1116950 | 0.820156 | 7.960501e-53 | -8.615850e-47 |
Msa0626900 | Msa1116950 | 0.822512 | 2.277194e-53 | -8.615850e-47 |
Msa0649240 | Msa1116950 | -0.801159 | 1.026726e-48 | -8.615850e-47 |
Msa0649530 | Msa1116950 | 0.803157 | 3.985856e-49 | -8.615850e-47 |
Msa0653500 | Msa1116950 | 0.803646 | 3.155763e-49 | -8.615850e-47 |
Msa0657300 | Msa1116950 | 0.821179 | 4.632206e-53 | -8.615850e-47 |
Msa0658280 | Msa1116950 | 0.801341 | 9.426188e-49 | -8.615850e-47 |
Msa0663690 | Msa1116950 | 0.819623 | 1.053787e-52 | -8.615850e-47 |
Msa0668000 | Msa1116950 | 0.848349 | 6.484625e-60 | -8.615850e-47 |
Msa0675250 | Msa1116950 | 0.800477 | 1.415127e-48 | -8.615850e-47 |
Msa0690920 | Msa1116950 | 0.803092 | 4.110176e-49 | -8.615850e-47 |
Msa0691740 | Msa1116950 | 0.812110 | 4.998228e-51 | -8.615850e-47 |
Msa0702360 | Msa1116950 | 0.805142 | 1.539912e-49 | -8.615850e-47 |
Msa0702560 | Msa1116950 | 0.818407 | 1.991936e-52 | -8.615850e-47 |
Msa0705810 | Msa1116950 | 0.802620 | 5.145462e-49 | -8.615850e-47 |
Msa0706690 | Msa1116950 | -0.809834 | 1.555579e-50 | -8.615850e-47 |
Msa0718920 | Msa1116950 | 0.829419 | 5.201734e-55 | -8.615850e-47 |
Msa0730250 | Msa1116950 | 0.813330 | 2.703790e-51 | -8.615850e-47 |
Msa0748980 | Msa1116950 | 0.803962 | 2.714061e-49 | -8.615850e-47 |
Msa0756440 | Msa1116950 | 0.834225 | 3.389242e-56 | -8.615850e-47 |
Msa0770540 | Msa1116950 | 0.800369 | 1.488682e-48 | -8.615850e-47 |
Msa0835550 | Msa1116950 | 0.831029 | 2.104386e-55 | -8.615850e-47 |
Msa0139280 | Msa1116950 | 0.817574 | 3.073005e-52 | -8.615850e-47 |
Msa0169710 | Msa1116950 | -0.808099 | 3.657590e-50 | -8.615850e-47 |
Msa0172290 | Msa1116950 | 0.801514 | 8.685778e-49 | -8.615850e-47 |
Msa0186380 | Msa1116950 | 0.838118 | 3.476504e-57 | -8.615850e-47 |
Msa0190400 | Msa1116950 | 0.804546 | 2.050565e-49 | -8.615850e-47 |
Msa0195140 | Msa1116950 | 0.815729 | 7.963188e-52 | -8.615850e-47 |
Msa0208710 | Msa1116950 | 0.805978 | 1.028072e-49 | -8.615850e-47 |
Msa0209370 | Msa1116950 | 0.800632 | 1.315926e-48 | -8.615850e-47 |
Msa0209590 | Msa1116950 | 0.801462 | 8.902344e-49 | -8.615850e-47 |
Msa0226580 | Msa1116950 | 0.807913 | 4.006042e-50 | -8.615850e-47 |
Msa0227970 | Msa1116950 | 0.802230 | 6.191605e-49 | -8.615850e-47 |
Msa0365350 | Msa1116950 | 0.809701 | 1.661449e-50 | -8.615850e-47 |
Msa0370350 | Msa1116950 | 0.853611 | 2.131526e-61 | -8.615850e-47 |
Msa0372990 | Msa1116950 | 0.803830 | 2.890543e-49 | -8.615850e-47 |
Msa0375570 | Msa1116950 | 0.820036 | 8.480341e-53 | -8.615850e-47 |
Msa0385870 | Msa1116950 | 0.848002 | 8.085961e-60 | -8.615850e-47 |
Msa0408490 | Msa1116950 | 0.816261 | 6.057331e-52 | -8.615850e-47 |
Msa0417850 | Msa1116950 | 0.842733 | 2.159372e-58 | -8.615850e-47 |
Msa0424220 | Msa1116950 | 0.821000 | 5.093170e-53 | -8.615850e-47 |
Msa0453310 | Msa1116950 | 0.835544 | 1.577521e-56 | -8.615850e-47 |
Msa0984860 | Msa1116950 | 0.801930 | 7.135618e-49 | -8.615850e-47 |
Msa0985040 | Msa1116950 | 0.837997 | 3.734732e-57 | -8.615850e-47 |
Msa0987670 | Msa1116950 | -0.804272 | 2.339732e-49 | -8.615850e-47 |
Msa0995090 | Msa1116950 | 0.801484 | 8.808995e-49 | -8.615850e-47 |
Msa1010470 | Msa1116950 | 0.817292 | 3.557044e-52 | -8.615850e-47 |
Msa1015020 | Msa1116950 | 0.802371 | 5.791792e-49 | -8.615850e-47 |
Msa1029010 | Msa1116950 | 0.816127 | 6.489095e-52 | -8.615850e-47 |
Msa1052030 | Msa1116950 | 0.804545 | 2.051657e-49 | -8.615850e-47 |
Msa0240590 | Msa1116950 | 0.806697 | 7.251499e-50 | -8.615850e-47 |
Msa0240600 | Msa1116950 | 0.803545 | 3.312519e-49 | -8.615850e-47 |
Msa0249670 | Msa1116950 | 0.803546 | 3.310232e-49 | -8.615850e-47 |
Msa0256430 | Msa1116950 | 0.806835 | 6.783537e-50 | -8.615850e-47 |
Msa0309670 | Msa1116950 | 0.805008 | 1.642602e-49 | -8.615850e-47 |
Msa0317360 | Msa1116950 | 0.803437 | 3.487755e-49 | -8.615850e-47 |
Msa0331830 | Msa1116950 | 0.823965 | 1.042717e-53 | -8.615850e-47 |
Msa0339340 | Msa1116950 | 0.801797 | 7.599312e-49 | -8.615850e-47 |
Msa0358720 | Msa1116950 | 0.816861 | 4.445891e-52 | -8.615850e-47 |
Msa0361040 | Msa1116950 | 0.804314 | 2.292114e-49 | -8.615850e-47 |
Msa1116950 | Msa1117830 | 0.808862 | 2.514088e-50 | -8.615850e-47 |
Msa1116950 | Msa1136890 | 0.807599 | 4.672057e-50 | -8.615850e-47 |
Msa1116950 | Msa1136970 | 0.892567 | 1.409184e-74 | -8.615850e-47 |
Msa1116950 | Msa1140480 | 0.812080 | 5.074939e-51 | -8.615850e-47 |
Msa1116950 | Msa1151970 | 0.803505 | 3.375939e-49 | -8.615850e-47 |
Msa1116950 | Msa1161520 | 0.802681 | 4.999199e-49 | -8.615850e-47 |
Msa1116950 | Msa1182400 | 0.810196 | 1.299857e-50 | -8.615850e-47 |
Msa1116950 | Msa1186010 | 0.829796 | 4.213007e-55 | -8.615850e-47 |
Msa1116950 | Msa1188820 | 0.802191 | 6.307190e-49 | -8.615850e-47 |
Msa1116950 | Msa1194480 | 0.804350 | 2.253695e-49 | -8.615850e-47 |
Msa1116950 | Msa1196210 | 0.832044 | 1.183302e-55 | -8.615850e-47 |
Msa1116950 | Msa1202220 | 0.805671 | 1.192877e-49 | -8.615850e-47 |
Msa1116950 | Msa1203840 | 0.828532 | 8.529964e-55 | -8.615850e-47 |
Msa1116950 | Msa1203860 | 0.817816 | 2.710294e-52 | -8.615850e-47 |
Msa1116950 | Msa1207880 | -0.809904 | 1.502572e-50 | -8.615850e-47 |
Msa1116950 | Msa1224820 | 0.804980 | 1.664441e-49 | -8.615850e-47 |
Msa1116950 | Msa1228600 | 0.819626 | 1.052393e-52 | -8.615850e-47 |
Msa1116950 | Msa1229880 | 0.814064 | 1.862973e-51 | -8.615850e-47 |
Msa1116950 | Msa1240240 | 0.806843 | 6.754492e-50 | -8.615850e-47 |
Msa1116950 | Msa1247720 | 0.802958 | 4.381450e-49 | -8.615850e-47 |
Msa1116950 | Msa1249410 | 0.805161 | 1.525840e-49 | -8.615850e-47 |
Msa1116950 | Msa1258200 | 0.829773 | 4.267780e-55 | -8.615850e-47 |
Msa1116950 | Msa1279240 | 0.801830 | 7.481351e-49 | -8.615850e-47 |
Msa1116950 | Msa1279320 | 0.829893 | 3.989966e-55 | -8.615850e-47 |
Msa1116950 | Msa1286950 | 0.803585 | 3.249470e-49 | -8.615850e-47 |
Msa1116950 | Msa1288970 | 0.816578 | 5.145573e-52 | -8.615850e-47 |
Msa1116950 | Msa1296270 | 0.810151 | 1.329442e-50 | -8.615850e-47 |
Msa1116950 | Msa1310620 | 0.812309 | 4.524381e-51 | -8.615850e-47 |
Msa1116950 | Msa1319710 | 0.840327 | 9.297682e-58 | -8.615850e-47 |
Msa1116950 | Msa1330910 | 0.828808 | 7.315944e-55 | -8.615850e-47 |
Msa1116950 | Msa1343460 | -0.813720 | 2.219236e-51 | -8.615850e-47 |
Msa1116950 | Msa1346220 | 0.818126 | 2.306799e-52 | -8.615850e-47 |
Msa1116950 | Msa1346340 | 0.813904 | 2.021225e-51 | -8.615850e-47 |
Msa1116950 | Msa1348860 | 0.806446 | 8.193229e-50 | -8.615850e-47 |
Msa1116950 | Msa1349490 | 0.800260 | 1.566488e-48 | -8.615850e-47 |
Msa1116950 | Msa1350350 | 0.818728 | 1.684400e-52 | -8.615850e-47 |
Msa1116950 | Msa1356730 | 0.803863 | 2.845899e-49 | -8.615850e-47 |
Msa1116950 | Msa1365130 | 0.808258 | 3.384084e-50 | -8.615850e-47 |
Msa1116950 | Msa1367900 | 0.806143 | 9.493234e-50 | -8.615850e-47 |
Msa1116950 | Msa1368150 | 0.824358 | 8.430612e-54 | -8.615850e-47 |
Msa1116950 | Msa1368800 | 0.807614 | 4.638569e-50 | -8.615850e-47 |
Msa1116950 | Msa1371270 | -0.805993 | 1.020631e-49 | -8.615850e-47 |
Msa1116950 | Msa1378840 | 0.825764 | 3.922876e-54 | -8.615850e-47 |
Msa1116950 | Msa1384980 | 0.805076 | 1.589203e-49 | -8.615850e-47 |
Msa1116950 | Msa1387100 | 0.803581 | 3.255339e-49 | -8.615850e-47 |
Msa1116950 | Msa1395700 | 0.817653 | 2.948995e-52 | -8.615850e-47 |
Msa1116950 | Msa1398310 | 0.837490 | 5.041532e-57 | -8.615850e-47 |
Msa1116950 | Msa1414000 | 0.823806 | 1.135795e-53 | -8.615850e-47 |
Msa1116950 | Msa1420630 | 0.802190 | 6.310996e-49 | -8.615850e-47 |
Msa1116950 | Msa1425540 | 0.800792 | 1.220680e-48 | -8.615850e-47 |
Msa1116950 | Msa1425570 | 0.800986 | 1.114267e-48 | -8.615850e-47 |
Msa1116950 | Msa1427600 | 0.834592 | 2.742186e-56 | -8.615850e-47 |
Msa1116950 | Msa1444660 | -0.814001 | 1.923980e-51 | -8.615850e-47 |
Msa1116950 | Msa1459630 | 0.820651 | 6.129828e-53 | -8.615850e-47 |
Msa1116950 | Msa1463500 | 0.839969 | 1.152511e-57 | -8.615850e-47 |
Msa0488900 | Msa1116950 | 0.837926 | 3.896204e-57 | -8.615850e-47 |
Msa0501540 | Msa1116950 | 0.807932 | 3.970025e-50 | -8.615850e-47 |
Msa0519060 | Msa1116950 | 0.815280 | 1.002104e-51 | -8.615850e-47 |
Msa0523400 | Msa1116950 | 0.836277 | 1.028353e-56 | -8.615850e-47 |
Msa0532910 | Msa1116950 | 0.801413 | 9.112449e-49 | -8.615850e-47 |
Msa0533140 | Msa1116950 | 0.823500 | 1.339865e-53 | -8.615850e-47 |
Msa0534380 | Msa1116950 | 0.807396 | 5.158564e-50 | -8.615850e-47 |
Msa0540160 | Msa1116950 | 0.823250 | 1.532245e-53 | -8.615850e-47 |
Msa0555510 | Msa1116950 | 0.814114 | 1.816449e-51 | -8.615850e-47 |
Msa0565150 | Msa1116950 | 0.804127 | 2.507885e-49 | -8.615850e-47 |
Msa0585720 | Msa1116950 | 0.800945 | 1.135596e-48 | -8.615850e-47 |
Msa0589540 | Msa1116950 | 0.865230 | 6.865942e-65 | -8.615850e-47 |
Msa0876030 | Msa1116950 | 0.881644 | 2.022573e-70 | -8.615850e-47 |
Msa0883700 | Msa1116950 | 0.827046 | 1.942414e-54 | -8.615850e-47 |
Msa0902810 | Msa1116950 | 0.807607 | 4.654829e-50 | -8.615850e-47 |
Msa0917630 | Msa1116950 | 0.804608 | 1.990496e-49 | -8.615850e-47 |
Msa0938370 | Msa1116950 | 0.811129 | 8.171401e-51 | -8.615850e-47 |
Msa0967250 | Msa1116950 | 0.800937 | 1.140028e-48 | -8.615850e-47 |
Msa0975440 | Msa1116950 | 0.802111 | 6.550158e-49 | -8.615850e-47 |
Msa0978290 | Msa1116950 | 0.827856 | 1.241744e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1116950 | MtrunA17_Chr7g0259491 | 92.081 | 442 | 10 | 1 | 1 | 442 | 1 | 417 | 0.0 | 823 |
Msa1116950 | MtrunA17_Chr1g0196611 | 54.186 | 430 | 163 | 5 | 1 | 428 | 2 | 399 | 6.12e-148 | 427 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1116950 | AT4G02920.2 | 33.036 | 448 | 259 | 11 | 4 | 442 | 3 | 418 | 4.32e-62 | 207 |
Msa1116950 | AT4G02920.1 | 32.816 | 451 | 255 | 13 | 4 | 442 | 3 | 417 | 2.06e-61 | 205 |
Msa1116950 | AT1G03340.1 | 32.723 | 382 | 187 | 11 | 69 | 442 | 66 | 385 | 9.61e-43 | 155 |
Find 114 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACCTTAATTGCTCCTTTA+AGG | 0.086245 | 7_3:-64999503 | Msa1116950:CDS |
TGTCATCAAACCATTTATTT+TGG | 0.095179 | 7_3:+65001792 | None:intergenic |
TGATGGTCAAATCACATTTA+TGG | 0.142350 | 7_3:-65001008 | Msa1116950:CDS |
TTGGGTTAGTTTGGCTTTCT+TGG | 0.148840 | 7_3:-64998084 | Msa1116950:CDS |
CATAGTGCATACCTCCTTAA+AGG | 0.165058 | 7_3:+64999489 | None:intergenic |
TTCAATACCGGGTTAGGATT+TGG | 0.235587 | 7_3:-64998103 | Msa1116950:CDS |
CCTCCTTAAAGGAGCAATTA+AGG | 0.241525 | 7_3:+64999500 | None:intergenic |
AGTTTGTTGAACTGTAAATT+TGG | 0.267176 | 7_3:-64997880 | Msa1116950:three_prime_UTR |
TTAGTATGGGATTCCTATTC+AGG | 0.269221 | 7_3:-65002531 | Msa1116950:five_prime_UTR |
CGATGGAAACCCAAAATAAA+TGG | 0.279469 | 7_3:-65001802 | Msa1116950:CDS |
GGTTTGAGTTTCACTTTCTT+AGG | 0.281846 | 7_3:+64998391 | None:intergenic |
ACCGGAGGACCGTCTTCTTT+TGG | 0.285085 | 7_3:+65000370 | None:intergenic |
AGTTCAACAAACTACATCTT+TGG | 0.285924 | 7_3:+64997890 | None:intergenic |
CAAATTTCTGCAGGCATTGC+TGG | 0.307977 | 7_3:-64998202 | Msa1116950:CDS |
TAAAGATTTCTTAGTGGAAC+TGG | 0.308051 | 7_3:+64997828 | None:intergenic |
GAAGTTAGGGAGAGAAATAA+TGG | 0.309953 | 7_3:-65000414 | Msa1116950:CDS |
AAGATTACAGTTGATCTTGA+TGG | 0.311103 | 7_3:-65001025 | Msa1116950:CDS |
GATGGTCAAATCACATTTAT+GGG | 0.314731 | 7_3:-65001007 | Msa1116950:CDS |
TCAATACCGGGTTAGGATTT+GGG | 0.322556 | 7_3:-64998102 | Msa1116950:CDS |
TGGTTCAGAAACTCGATAAA+AGG | 0.333502 | 7_3:-64997985 | Msa1116950:CDS |
GTAGCGGTGCAAAGGAAGTT+AGG | 0.336131 | 7_3:-65000428 | Msa1116950:intron |
CGCCATTGGTTGAACGACTT+TGG | 0.354888 | 7_3:-65002500 | Msa1116950:five_prime_UTR |
TTGAGGTCAAATTTGTCATC+AGG | 0.356612 | 7_3:+65001091 | None:intergenic |
TATAAAAGAGATGATGAAAA+TGG | 0.366840 | 7_3:+65001115 | None:intergenic |
GATTGCATCTTCACTGTAGA+TGG | 0.367369 | 7_3:+64999525 | None:intergenic |
ATTCAGCGGTTCCAGACTTT+AGG | 0.367769 | 7_3:+65001218 | None:intergenic |
TGGGTTAGTTTGGCTTTCTT+GGG | 0.372441 | 7_3:-64998083 | Msa1116950:CDS |
GGTTAGGATTTGGGTTAGTT+TGG | 0.373556 | 7_3:-64998093 | Msa1116950:CDS |
GAAATCTTTAAGACAACAAT+TGG | 0.385420 | 7_3:-64997815 | Msa1116950:three_prime_UTR |
CTCTGATTTCCTTCAGAAGA+TGG | 0.388377 | 7_3:-65002341 | Msa1116950:exon |
GCGTCCAGCTTGTTCAATAC+CGG | 0.391238 | 7_3:-64998115 | Msa1116950:CDS |
AACTGTAATCTTTGAAGAAA+AGG | 0.393747 | 7_3:+65001036 | None:intergenic |
ACAAGAAAATTGACAGAGAA+AGG | 0.405326 | 7_3:-64998354 | Msa1116950:CDS |
CACTGGTAACTGAGCACGTC+TGG | 0.407106 | 7_3:+65001857 | None:intergenic |
AGCAAGAATGCAGGGAAGTT+GGG | 0.415107 | 7_3:-64998025 | Msa1116950:CDS |
AGCTTGTTCAATACCGGGTT+AGG | 0.421443 | 7_3:-64998109 | Msa1116950:CDS |
CAGCAAGAATGCAGGGAAGT+TGG | 0.427856 | 7_3:-64998026 | Msa1116950:CDS |
TTGTCTTAAAGATTTCTTAG+TGG | 0.434096 | 7_3:+64997822 | None:intergenic |
ATTTCAAAGCACCTAAAGTC+TGG | 0.434478 | 7_3:-65001229 | Msa1116950:CDS |
TTGATGAAATTGCAGTTGTC+AGG | 0.446115 | 7_3:-65001157 | Msa1116950:CDS |
GGGTTTGAAAGAAGAGGAAA+TGG | 0.452832 | 7_3:-64998005 | Msa1116950:CDS |
TGGCGGGCATGAGCCTGAAT+AGG | 0.454899 | 7_3:+65002518 | None:intergenic |
TCTGCAGGCATTGCTGGGAC+AGG | 0.455168 | 7_3:-64998196 | Msa1116950:CDS |
GCCTCTCATACCTACCCTCC+AGG | 0.457429 | 7_3:-65002298 | Msa1116950:CDS |
TGCTTGTTCCATACTTCAGC+AGG | 0.457775 | 7_3:-65000898 | Msa1116950:intron |
CCTTGGGTGTCAACTGATAC+AGG | 0.458456 | 7_3:+65001734 | None:intergenic |
TTCAGGCTCATGCCCGCCAT+TGG | 0.465194 | 7_3:-65002514 | Msa1116950:five_prime_UTR |
CTTGCTGATGCTGACAATTG+TGG | 0.469254 | 7_3:+64998042 | None:intergenic |
GCAATATCATAGTTTGATGT+AGG | 0.475868 | 7_3:-64997766 | Msa1116950:three_prime_UTR |
TTTCTTACACAAATTTCTGC+AGG | 0.480521 | 7_3:-64998211 | Msa1116950:CDS |
GTCAGCATCAGCAAGAATGC+AGG | 0.487002 | 7_3:-64998034 | Msa1116950:CDS |
ATTCCTTCGCTGAAGAAATC+CGG | 0.487763 | 7_3:-64998250 | Msa1116950:CDS |
GATAGACTTGGCTTAAGAAA+AGG | 0.490107 | 7_3:+65001833 | None:intergenic |
TTGGATCTCTAAAGTGATGA+TGG | 0.493386 | 7_3:-64997861 | Msa1116950:three_prime_UTR |
TGTTGACCATCAAGGACAAA+AGG | 0.493852 | 7_3:+64998296 | None:intergenic |
ATGTTAATTCCTCACCTCAA+TGG | 0.502348 | 7_3:-65001757 | Msa1116950:CDS |
CGTCCAGCTTGTTCAATACC+GGG | 0.505852 | 7_3:-64998114 | Msa1116950:CDS |
CTTGGGCAGTAAGTAAGCTA+AGG | 0.507686 | 7_3:-64998066 | Msa1116950:CDS |
GAGAGAAATAATGGGAAAGC+AGG | 0.508621 | 7_3:-65000405 | Msa1116950:CDS |
CATGTCAAAGAGCTTACATA+AGG | 0.508648 | 7_3:-65000936 | Msa1116950:CDS |
AAGTCTATCTGCCGAGTCGA+TGG | 0.511435 | 7_3:-65001819 | Msa1116950:CDS |
TGTTGTTGTAAGACAAGGCC+TGG | 0.512061 | 7_3:+65002280 | None:intergenic |
GCCAAAAGAAGACGGTCCTC+CGG | 0.519094 | 7_3:-65000371 | Msa1116950:intron |
AGGATTAGAGATATTTACTT+CGG | 0.519138 | 7_3:-64997965 | Msa1116950:CDS |
CAAGAAAATTGACAGAGAAA+GGG | 0.521736 | 7_3:-64998353 | Msa1116950:CDS |
TGTAAGAAACTCAGAAAGCT+CGG | 0.527161 | 7_3:+64998225 | None:intergenic |
AAACTCAGAAAGCTCGGGAC+CGG | 0.527375 | 7_3:+64998231 | None:intergenic |
AAGTTAGGGAGAGAAATAAT+GGG | 0.527866 | 7_3:-65000413 | Msa1116950:CDS |
TGAGGTCAAATTTGTCATCA+GGG | 0.532738 | 7_3:+65001092 | None:intergenic |
TAGCGGTGCAAAGGAAGTTA+GGG | 0.538252 | 7_3:-65000427 | Msa1116950:CDS |
TAAAAGTACAGCATTTGAGC+AGG | 0.542688 | 7_3:+65001291 | None:intergenic |
TTGATGTAGGAAGCATTGCT+TGG | 0.543808 | 7_3:-64997753 | Msa1116950:three_prime_UTR |
ATCGACTCGGCAGATAGACT+TGG | 0.543922 | 7_3:+65001821 | None:intergenic |
TCTGTAAACTAGCTTGTGGA+AGG | 0.546336 | 7_3:-64998150 | Msa1116950:CDS |
AAATTTCTGCAGGCATTGCT+GGG | 0.547448 | 7_3:-64998201 | Msa1116950:CDS |
TTTCATCAAGTCTAACATCA+AGG | 0.557831 | 7_3:+65001171 | None:intergenic |
TTCCAAAGTCGTTCAACCAA+TGG | 0.558820 | 7_3:+65002498 | None:intergenic |
GCCTGGAGGGTAGGTATGAG+AGG | 0.559656 | 7_3:+65002297 | None:intergenic |
GTCTCTGCACCATCTTCTGA+AGG | 0.565605 | 7_3:+65002332 | None:intergenic |
GAAGTTGGGTTTGAAAGAAG+AGG | 0.568730 | 7_3:-64998011 | Msa1116950:CDS |
TAAGACAAGGCCTGGAGGGT+AGG | 0.568949 | 7_3:+65002288 | None:intergenic |
GTAATCTGTAAACTAGCTTG+TGG | 0.570115 | 7_3:-64998154 | Msa1116950:CDS |
TTAAACTTGTAGCGGTGCAA+AGG | 0.570473 | 7_3:-65000436 | Msa1116950:intron |
TATTAAACAAACAAAACAAG+TGG | 0.578838 | 7_3:-65002465 | Msa1116950:five_prime_UTR |
GTAAGAAACTCAGAAAGCTC+GGG | 0.580957 | 7_3:+64998226 | None:intergenic |
AAAGTCGTTCAACCAATGGC+GGG | 0.581039 | 7_3:+65002502 | None:intergenic |
TTGGGCAGTAAGTAAGCTAA+GGG | 0.581175 | 7_3:-64998065 | Msa1116950:CDS |
GGACCGGATTTCTTCAGCGA+AGG | 0.582537 | 7_3:+64998247 | None:intergenic |
CTGTAAACTAGCTTGTGGAA+GGG | 0.584100 | 7_3:-64998149 | Msa1116950:CDS |
CCTTAATTGCTCCTTTAAGG+AGG | 0.588973 | 7_3:-64999500 | Msa1116950:intron |
GTTGTAAGACAAGGCCTGGA+GGG | 0.590880 | 7_3:+65002284 | None:intergenic |
TCAACTGATACAGGCCATTG+AGG | 0.595001 | 7_3:+65001743 | None:intergenic |
ACTATCTTTACGCGATTCAG+CGG | 0.596799 | 7_3:+65001204 | None:intergenic |
ACAACAACAACTTCATCTCA+AGG | 0.596977 | 7_3:-65002263 | Msa1116950:intron |
ATGGATATCAATGAAGCAGA+AGG | 0.597338 | 7_3:-64999558 | Msa1116950:CDS |
GATGATGAAAATGGTTGTTG+AGG | 0.605604 | 7_3:+65001124 | None:intergenic |
CAAAGTCGTTCAACCAATGG+CGG | 0.608335 | 7_3:+65002501 | None:intergenic |
TAATATTATTAATATTTGTG+TGG | 0.610596 | 7_3:+65002405 | None:intergenic |
TAACCCGGTATTGAACAAGC+TGG | 0.611936 | 7_3:+64998111 | None:intergenic |
AACTAACCCAAATCCTAACC+CGG | 0.615247 | 7_3:+64998096 | None:intergenic |
TCAGCATCAGCAAGAATGCA+GGG | 0.620127 | 7_3:-64998033 | Msa1116950:CDS |
TCTTGAAGAAAATACAGCAA+AGG | 0.629477 | 7_3:+65001064 | None:intergenic |
AATGCTCAGCCAAAAGAAGA+CGG | 0.632574 | 7_3:-65000379 | Msa1116950:CDS |
ATTAAACAAACAAAACAAGT+GGG | 0.639802 | 7_3:-65002464 | Msa1116950:five_prime_UTR |
TTGGCTTAAGAAAAGGACAC+TGG | 0.645172 | 7_3:+65001840 | None:intergenic |
CCTGTATCAGTTGACACCCA+AGG | 0.646830 | 7_3:-65001734 | Msa1116950:intron |
TGATACAGGCCATTGAGGTG+AGG | 0.651565 | 7_3:+65001748 | None:intergenic |
GGGTAGGTATGAGAGGCCAT+CGG | 0.654610 | 7_3:+65002304 | None:intergenic |
AGATATTTACTTCGGCTCTG+CGG | 0.655008 | 7_3:-64997957 | Msa1116950:CDS |
GGTGCAGAGACTGTGTCCGA+TGG | 0.661426 | 7_3:-65002320 | Msa1116950:CDS |
AATACAGCAAAGGCTTCTTG+AGG | 0.683189 | 7_3:+65001074 | None:intergenic |
GTTGTTGTTGTTGTAAGACA+AGG | 0.689463 | 7_3:+65002275 | None:intergenic |
TGTTGTAAGACAAGGCCTGG+AGG | 0.699115 | 7_3:+65002283 | None:intergenic |
TTACAGATAGTAGAACAGCA+AGG | 0.718556 | 7_3:+64998173 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTATAATAATTATTAT+TGG | + | chr7_3:65002505-65002524 | None:intergenic | 0.0% |
!! | TAATATTATTAATATTTGTG+TGG | + | chr7_3:64997765-64997784 | None:intergenic | 10.0% |
!!! | TTTCATAAATGTTTAACTTT+CGG | - | chr7_3:64998006-64998025 | Msa1116950:CDS | 15.0% |
!! | TAGAAAAATAAACGATAAAA+TGG | + | chr7_3:64998473-64998492 | None:intergenic | 15.0% |
!! | AAAATCTTATAAACATAGAA+TGG | + | chr7_3:64999357-64999376 | None:intergenic | 15.0% |
!! | ATATTTACAAAACATCTAAA+AGG | + | chr7_3:64999453-64999472 | None:intergenic | 15.0% |
!! | ATAAAATTAGTGTAAAGAAT+AGG | + | chr7_3:65000263-65000282 | None:intergenic | 15.0% |
!! | AAATAACTGTTATTGTATTT+AGG | - | chr7_3:65001059-65001078 | Msa1116950:CDS | 15.0% |
!! | GAAACATTTACAATAAAAAT+TGG | + | chr7_3:65001285-65001304 | None:intergenic | 15.0% |
!!! | TTTATTGTAAATGTTTCTTT+TGG | - | chr7_3:65001288-65001307 | Msa1116950:CDS | 15.0% |
!!! | CTACTTTTTATTCAAAAATT+TGG | - | chr7_3:65001314-65001333 | Msa1116950:intron | 15.0% |
!!! | TGTAATATAGAATTTTGTTA+TGG | - | chr7_3:65002447-65002466 | Msa1116950:five_prime_UTR | 15.0% |
!! | TATTAAACAAACAAAACAAG+TGG | - | chr7_3:64997702-64997721 | Msa1116950:three_prime_UTR | 20.0% |
!! | ATTAAACAAACAAAACAAGT+GGG | - | chr7_3:64997703-64997722 | Msa1116950:three_prime_UTR | 20.0% |
!!! | TCATGTTTTCTAATTGTTTA+TGG | - | chr7_3:64997945-64997964 | Msa1116950:CDS | 20.0% |
!! | GAAAGTTAAACATTTATGAA+AGG | + | chr7_3:64998007-64998026 | None:intergenic | 20.0% |
!!! | TTCATAAATGTTTAACTTTC+GGG | - | chr7_3:64998007-64998026 | Msa1116950:CDS | 20.0% |
!!! | TTTTTAATATTTTCCATGAC+AGG | - | chr7_3:64998252-64998271 | Msa1116950:CDS | 20.0% |
!!! | CTAGTTCTAATATATGATAA+TGG | + | chr7_3:64998517-64998536 | None:intergenic | 20.0% |
!! | ACTGATAACAATTTGAAAAA+TGG | + | chr7_3:64998667-64998686 | None:intergenic | 20.0% |
!! | TAGATACAACATAAAAACAT+AGG | + | chr7_3:64998812-64998831 | None:intergenic | 20.0% |
!!! | TTTTATGTTGTATCTAATTC+TGG | - | chr7_3:64998816-64998835 | Msa1116950:intron | 20.0% |
!! | TATAAAAGAGATGATGAAAA+TGG | + | chr7_3:64999055-64999074 | None:intergenic | 20.0% |
!! | TTATAATCTACGTTGATATT+TGG | - | chr7_3:64999320-64999339 | Msa1116950:intron | 20.0% |
!! | TAAATATTAGAGTCGTATTT+CGG | - | chr7_3:64999466-64999485 | Msa1116950:intron | 20.0% |
!!! | ATTAGTAATGTTAGTTTCTA+AGG | + | chr7_3:64999546-64999565 | None:intergenic | 20.0% |
!!! | GTTAGTCTGAATTAAATTTT+CGG | - | chr7_3:65000100-65000119 | Msa1116950:intron | 20.0% |
!!! | TCTTTACACTAATTTTATGT+CGG | - | chr7_3:65000265-65000284 | Msa1116950:intron | 20.0% |
!! | ATTCAACTATCATGAATAAA+AGG | + | chr7_3:65000413-65000432 | None:intergenic | 20.0% |
!!! | CAGACACAAATTATATATTT+TGG | - | chr7_3:65001214-65001233 | Msa1116950:CDS | 20.0% |
!! | ATTCATGAAATAAAAAATGC+AGG | + | chr7_3:65001426-65001445 | None:intergenic | 20.0% |
!! | AAAAATTACTGTAAGCAATT+AGG | + | chr7_3:65001710-65001729 | None:intergenic | 20.0% |
!! | TCATAAATGTTTAACTTTCG+GGG | - | chr7_3:64998008-64998027 | Msa1116950:CDS | 25.0% |
!!! | TCTTAATTTGCACAATTCAA+AGG | - | chr7_3:64998051-64998070 | Msa1116950:CDS | 25.0% |
!!! | GTCATCAAACCATTTATTTT+GGG | + | chr7_3:64998377-64998396 | None:intergenic | 25.0% |
!! | TGTCATCAAACCATTTATTT+TGG | + | chr7_3:64998378-64998397 | None:intergenic | 25.0% |
!! | AACTGTAATCTTTGAAGAAA+AGG | + | chr7_3:64999134-64999153 | None:intergenic | 25.0% |
! | AAAACATGTCTTAATGATGA+AGG | - | chr7_3:64999595-64999614 | Msa1116950:intron | 25.0% |
! | ACCGCAAAAAGTTATTAAAA+CGG | + | chr7_3:64999890-64999909 | None:intergenic | 25.0% |
! | AAAAGGTTAAAATCTATAGC+TGG | + | chr7_3:65000396-65000415 | None:intergenic | 25.0% |
! | CAAATGTATTGAATAGTTCA+AGG | + | chr7_3:65000459-65000478 | None:intergenic | 25.0% |
! | CAACATTTATATGCTAAACA+AGG | + | chr7_3:65000772-65000791 | None:intergenic | 25.0% |
!!! | TGCAGATAAATCTTATTTTC+TGG | - | chr7_3:65000880-65000899 | Msa1116950:intron | 25.0% |
!!! | ATCTTATTTTCTGGTGTTTT+AGG | - | chr7_3:65000889-65000908 | Msa1116950:intron | 25.0% |
! | ACTAATTGTTATGTGTAGTT+TGG | - | chr7_3:65000962-65000981 | Msa1116950:CDS | 25.0% |
! | ATTCAAAGAATCAGTTTAGA+TGG | + | chr7_3:65001470-65001489 | None:intergenic | 25.0% |
! | TCATGTTGAAAATTTATCTG+TGG | + | chr7_3:65001573-65001592 | None:intergenic | 25.0% |
! | AGGATTAGAGATATTTACTT+CGG | - | chr7_3:65002202-65002221 | Msa1116950:intron | 25.0% |
!!! | AGTTTGTTGAACTGTAAATT+TGG | - | chr7_3:65002287-65002306 | Msa1116950:CDS | 25.0% |
! | TTGTCTTAAAGATTTCTTAG+TGG | + | chr7_3:65002348-65002367 | None:intergenic | 25.0% |
!!! | GAAATCTTTAAGACAACAAT+TGG | - | chr7_3:65002352-65002371 | Msa1116950:five_prime_UTR | 25.0% |
! | CATAAATGTTTAACTTTCGG+GGG | - | chr7_3:64998009-64998028 | Msa1116950:CDS | 30.0% |
ATACAAGGAAGAGTTTGTAA+CGG | + | chr7_3:64998091-64998110 | None:intergenic | 30.0% | |
! | TTTGCTACTTATTGTCTATG+TGG | - | chr7_3:64998153-64998172 | Msa1116950:CDS | 30.0% |
ACGCATTCAATATGCAATAT+CGG | + | chr7_3:64998583-64998602 | None:intergenic | 30.0% | |
! | ACCAATTTGTTTCATTGACA+CGG | - | chr7_3:64998740-64998759 | Msa1116950:intron | 30.0% |
TTTCATCAAGTCTAACATCA+AGG | + | chr7_3:64998999-64999018 | None:intergenic | 30.0% | |
TCTTGAAGAAAATACAGCAA+AGG | + | chr7_3:64999106-64999125 | None:intergenic | 30.0% | |
AAGATTACAGTTGATCTTGA+TGG | - | chr7_3:64999142-64999161 | Msa1116950:intron | 30.0% | |
TGATGGTCAAATCACATTTA+TGG | - | chr7_3:64999159-64999178 | Msa1116950:intron | 30.0% | |
GATGGTCAAATCACATTTAT+GGG | - | chr7_3:64999160-64999179 | Msa1116950:intron | 30.0% | |
AAGTTGTGCATAATTGATAG+CGG | - | chr7_3:64999678-64999697 | Msa1116950:intron | 30.0% | |
ACTTAGGTTTAAACTTGTAG+CGG | - | chr7_3:64999723-64999742 | Msa1116950:intron | 30.0% | |
AAGTTAGGGAGAGAAATAAT+GGG | - | chr7_3:64999754-64999773 | Msa1116950:intron | 30.0% | |
!! | TATTTTCTCTGGTTTCTTAC+CGG | + | chr7_3:64999818-64999837 | None:intergenic | 30.0% |
CGCAAAAAGTTATTAAAACG+GGG | + | chr7_3:64999888-64999907 | None:intergenic | 30.0% | |
CCGCAAAAAGTTATTAAAAC+GGG | + | chr7_3:64999889-64999908 | None:intergenic | 30.0% | |
!! | CCCGTTTTAATAACTTTTTG+CGG | - | chr7_3:64999886-64999905 | Msa1116950:intron | 30.0% |
GGTTAATGCAAAATAAACCA+GGG | + | chr7_3:64999952-64999971 | None:intergenic | 30.0% | |
AAACAAGTAAAACAAGAGGT+GGG | + | chr7_3:65000055-65000074 | None:intergenic | 30.0% | |
AAAACAAGTAAAACAAGAGG+TGG | + | chr7_3:65000056-65000075 | None:intergenic | 30.0% | |
!!! | ACCTCTTGTTTTACTTGTTT+TGG | - | chr7_3:65000055-65000074 | Msa1116950:intron | 30.0% |
ACCAAAACAAGTAAAACAAG+AGG | + | chr7_3:65000059-65000078 | None:intergenic | 30.0% | |
!!! | CTTGTTTTACTTGTTTTGGT+AGG | - | chr7_3:65000059-65000078 | Msa1116950:intron | 30.0% |
TCTATCTCACTGTATTATGT+TGG | - | chr7_3:65000288-65000307 | Msa1116950:intron | 30.0% | |
TGATAACCTTTCTCTAATAG+AGG | - | chr7_3:65000354-65000373 | Msa1116950:intron | 30.0% | |
GATAACCTTTCTCTAATAGA+GGG | - | chr7_3:65000355-65000374 | Msa1116950:intron | 30.0% | |
ATAACCTTTCTCTAATAGAG+GGG | - | chr7_3:65000356-65000375 | Msa1116950:intron | 30.0% | |
GATCCTTTCATTATGTTCTT+CGG | - | chr7_3:65000488-65000507 | Msa1116950:intron | 30.0% | |
TTACCGAAGAACATAATGAA+AGG | + | chr7_3:65000494-65000513 | None:intergenic | 30.0% | |
CAAATCAAGAGACTAAAAAG+TGG | + | chr7_3:65000530-65000549 | None:intergenic | 30.0% | |
!! | CACTTTTTAGTCTCTTGATT+TGG | - | chr7_3:65000528-65000547 | Msa1116950:intron | 30.0% |
GTAAAAAAAGGTCAACAATC+AGG | + | chr7_3:65000718-65000737 | None:intergenic | 30.0% | |
GAGCATATCACAGTAAAAAA+AGG | + | chr7_3:65000730-65000749 | None:intergenic | 30.0% | |
! | TGTGATATGCTCTGATATTT+TGG | - | chr7_3:65000738-65000757 | Msa1116950:intron | 30.0% |
ATTTATATGCTAAACAAGGC+TGG | + | chr7_3:65000768-65000787 | None:intergenic | 30.0% | |
AATTGTTATGTGTAGTTTGG+CGG | - | chr7_3:65000965-65000984 | Msa1116950:CDS | 30.0% | |
!! | AAAGTACTGCTTTCTAAGTT+TGG | - | chr7_3:65001106-65001125 | Msa1116950:CDS | 30.0% |
!! | TACGAGTTATTTTCATTGAC+TGG | + | chr7_3:65001156-65001175 | None:intergenic | 30.0% |
CATGAATACTTGAGATTATG+AGG | - | chr7_3:65001439-65001458 | Msa1116950:intron | 30.0% | |
AGAAGATAATCCTTTCTCAT+CGG | + | chr7_3:65001499-65001518 | None:intergenic | 30.0% | |
TTTAATACTACCATCAGACA+AGG | - | chr7_3:65001531-65001550 | Msa1116950:intron | 30.0% | |
TTAATACTACCATCAGACAA+GGG | - | chr7_3:65001532-65001551 | Msa1116950:intron | 30.0% | |
! | ACTTTTCAGCTTCAATTGTT+TGG | - | chr7_3:65001601-65001620 | Msa1116950:intron | 30.0% |
!! | CTTAAATGAAAGCACTAATG+TGG | + | chr7_3:65001627-65001646 | None:intergenic | 30.0% |
GTATATTTCAGTAGGTATGT+AGG | + | chr7_3:65001683-65001702 | None:intergenic | 30.0% | |
! | TAGGCATTGTATATTTCAGT+AGG | + | chr7_3:65001691-65001710 | None:intergenic | 30.0% |
! | TTCTTGTTCTTCTTTTGTGA+TGG | + | chr7_3:65001800-65001819 | None:intergenic | 30.0% |
ACAAGAAAATTGACAGAGAA+AGG | - | chr7_3:65001813-65001832 | Msa1116950:CDS | 30.0% | |
CAAGAAAATTGACAGAGAAA+GGG | - | chr7_3:65001814-65001833 | Msa1116950:CDS | 30.0% | |
!!! | TTTTTTCTTGTTGACCATCA+AGG | + | chr7_3:65001882-65001901 | None:intergenic | 30.0% |
TGGTCAACAAGAAAAAAAGT+CGG | - | chr7_3:65001885-65001904 | Msa1116950:CDS | 30.0% | |
TTTCTTACACAAATTTCTGC+AGG | - | chr7_3:65001956-65001975 | Msa1116950:intron | 30.0% | |
AGTTCAACAAACTACATCTT+TGG | + | chr7_3:65002280-65002299 | None:intergenic | 30.0% | |
TAAAGATTTCTTAGTGGAAC+TGG | + | chr7_3:65002342-65002361 | None:intergenic | 30.0% | |
GCAATATCATAGTTTGATGT+AGG | - | chr7_3:65002401-65002420 | Msa1116950:five_prime_UTR | 30.0% | |
TTAGTATGGGATTCCTATTC+AGG | - | chr7_3:64997636-64997655 | Msa1116950:three_prime_UTR | 35.0% | |
! | GTTGTTGTTGTTGTAAGACA+AGG | + | chr7_3:64997895-64997914 | None:intergenic | 35.0% |
ACAACAACAACTTCATCTCA+AGG | - | chr7_3:64997904-64997923 | Msa1116950:exon | 35.0% | |
AAACTAACGCTGTGAATACA+AGG | + | chr7_3:64998106-64998125 | None:intergenic | 35.0% | |
!!! | GCTAGTTTTGCTTAATAGTC+TGG | - | chr7_3:64998189-64998208 | Msa1116950:CDS | 35.0% |
! | AACGTTTTTGCCTTCTTCTT+TGG | - | chr7_3:64998282-64998301 | Msa1116950:CDS | 35.0% |
GATAGACTTGGCTTAAGAAA+AGG | + | chr7_3:64998337-64998356 | None:intergenic | 35.0% | |
CGATGGAAACCCAAAATAAA+TGG | - | chr7_3:64998365-64998384 | Msa1116950:CDS | 35.0% | |
ATGTTAATTCCTCACCTCAA+TGG | - | chr7_3:64998410-64998429 | Msa1116950:intron | 35.0% | |
GGTTAGATGAAACATACCTT+GGG | + | chr7_3:64998452-64998471 | None:intergenic | 35.0% | |
TGGTTAGATGAAACATACCT+TGG | + | chr7_3:64998453-64998472 | None:intergenic | 35.0% | |
TCCGTGTCAATGAAACAAAT+TGG | + | chr7_3:64998744-64998763 | None:intergenic | 35.0% | |
! | TAAAAGTACAGCATTTGAGC+AGG | + | chr7_3:64998879-64998898 | None:intergenic | 35.0% |
! | TGCTCAAATGCTGTACTTTT+AGG | - | chr7_3:64998878-64998897 | Msa1116950:intron | 35.0% |
! | AATGCTGTACTTTTAGGCTT+TGG | - | chr7_3:64998884-64998903 | Msa1116950:intron | 35.0% |
! | ATTTCAAAGCACCTAAAGTC+TGG | - | chr7_3:64998938-64998957 | Msa1116950:intron | 35.0% |
TTGATGAAATTGCAGTTGTC+AGG | - | chr7_3:64999010-64999029 | Msa1116950:intron | 35.0% | |
GATGATGAAAATGGTTGTTG+AGG | + | chr7_3:64999046-64999065 | None:intergenic | 35.0% | |
TGAGGTCAAATTTGTCATCA+GGG | + | chr7_3:64999078-64999097 | None:intergenic | 35.0% | |
TTGAGGTCAAATTTGTCATC+AGG | + | chr7_3:64999079-64999098 | None:intergenic | 35.0% | |
CATGTCAAAGAGCTTACATA+AGG | - | chr7_3:64999231-64999250 | Msa1116950:intron | 35.0% | |
!! | TGTTTTTACCTGCTGAAGTA+TGG | + | chr7_3:64999280-64999299 | None:intergenic | 35.0% |
CAGCAACATGTATCAAATGA+TGG | + | chr7_3:64999638-64999657 | None:intergenic | 35.0% | |
! | GCACAACTTCATTTTCTACT+AGG | + | chr7_3:64999667-64999686 | None:intergenic | 35.0% |
GAAGTTAGGGAGAGAAATAA+TGG | - | chr7_3:64999753-64999772 | Msa1116950:intron | 35.0% | |
! | GAGTTGTCTTCTATTTTCTC+TGG | + | chr7_3:64999829-64999848 | None:intergenic | 35.0% |
ACAACTCATATCTGACTATC+TGG | - | chr7_3:64999842-64999861 | Msa1116950:intron | 35.0% | |
AATGCAAAATAAACCAGGGA+CGG | + | chr7_3:64999948-64999967 | None:intergenic | 35.0% | |
GGGTTAATGCAAAATAAACC+AGG | + | chr7_3:64999953-64999972 | None:intergenic | 35.0% | |
AATACACAAAATATGCGCAG+GGG | + | chr7_3:64999973-64999992 | None:intergenic | 35.0% | |
GAATACACAAAATATGCGCA+GGG | + | chr7_3:64999974-64999993 | None:intergenic | 35.0% | |
TGAATACACAAAATATGCGC+AGG | + | chr7_3:64999975-64999994 | None:intergenic | 35.0% | |
CTTCATTCTTTCTGATCATG+CGG | + | chr7_3:65000004-65000023 | None:intergenic | 35.0% | |
TGTATTATGTTGGCAACTGA+GGG | - | chr7_3:65000298-65000317 | Msa1116950:intron | 35.0% | |
ACATGTGCTGAGATTCTATA+TGG | - | chr7_3:65000581-65000600 | Msa1116950:intron | 35.0% | |
GAGATTCTATATGGACAGAA+TGG | - | chr7_3:65000590-65000609 | Msa1116950:intron | 35.0% | |
ATGGATATCAATGAAGCAGA+AGG | - | chr7_3:65000609-65000628 | Msa1116950:intron | 35.0% | |
CAACCTTAATTGCTCCTTTA+AGG | - | chr7_3:65000664-65000683 | Msa1116950:intron | 35.0% | |
ACTGCTTTCTAAGTTTGGTA+TGG | - | chr7_3:65001111-65001130 | Msa1116950:CDS | 35.0% | |
GCTATTCTTTGCAAGACAAA+TGG | - | chr7_3:65001345-65001364 | Msa1116950:intron | 35.0% | |
ATTCTTTGCAAGACAAATGG+AGG | - | chr7_3:65001348-65001367 | Msa1116950:intron | 35.0% | |
! | CAAATGGAGGTTTTCTGTAA+AGG | - | chr7_3:65001361-65001380 | Msa1116950:intron | 35.0% |
! | GGTTTGAGTTTCACTTTCTT+AGG | + | chr7_3:65001779-65001798 | None:intergenic | 35.0% |
TGTAAGAAACTCAGAAAGCT+CGG | + | chr7_3:65001945-65001964 | None:intergenic | 35.0% | |
TTACAGATAGTAGAACAGCA+AGG | + | chr7_3:65001997-65002016 | None:intergenic | 35.0% | |
! | GTAATCTGTAAACTAGCTTG+TGG | - | chr7_3:65002013-65002032 | Msa1116950:intron | 35.0% |
TGGTTCAGAAACTCGATAAA+AGG | - | chr7_3:65002182-65002201 | Msa1116950:intron | 35.0% | |
!! | TTGGATCTCTAAAGTGATGA+TGG | - | chr7_3:65002306-65002325 | Msa1116950:CDS | 35.0% |
TTCCAAAGTCGTTCAACCAA+TGG | + | chr7_3:64997672-64997691 | None:intergenic | 40.0% | |
CTCTGATTTCCTTCAGAAGA+TGG | - | chr7_3:64997826-64997845 | Msa1116950:three_prime_UTR | 40.0% | |
TTAACTTTCGGGGGAAAGTT+TGG | - | chr7_3:64998018-64998037 | Msa1116950:CDS | 40.0% | |
TAACTTTCGGGGGAAAGTTT+GGG | - | chr7_3:64998019-64998038 | Msa1116950:CDS | 40.0% | |
! | AACGTTTGATAGTCCTGTCA+TGG | + | chr7_3:64998268-64998287 | None:intergenic | 40.0% |
!!! | TCTGGTTTTGCCAAAGAAGA+AGG | + | chr7_3:64998295-64998314 | None:intergenic | 40.0% |
TTGGCTTAAGAAAAGGACAC+TGG | + | chr7_3:64998330-64998349 | None:intergenic | 40.0% | |
!!! | ATTTTGGGTTTCCATCGACT+CGG | + | chr7_3:64998362-64998381 | None:intergenic | 40.0% |
GCATATTGAATGCGTGTTAG+TGG | - | chr7_3:64998588-64998607 | Msa1116950:intron | 40.0% | |
ACTATCTTTACGCGATTCAG+CGG | + | chr7_3:64998966-64998985 | None:intergenic | 40.0% | |
AATACAGCAAAGGCTTCTTG+AGG | + | chr7_3:64999096-64999115 | None:intergenic | 40.0% | |
TATTAGAGTCGTATTTCGGC+AGG | - | chr7_3:64999470-64999489 | Msa1116950:intron | 40.0% | |
! | CTATAGGAGTTCTAACCAAG+AGG | - | chr7_3:64999507-64999526 | Msa1116950:CDS | 40.0% |
TTAAACTTGTAGCGGTGCAA+AGG | - | chr7_3:64999731-64999750 | Msa1116950:intron | 40.0% | |
! | GAGAGAAATAATGGGAAAGC+AGG | - | chr7_3:64999762-64999781 | Msa1116950:intron | 40.0% |
AATGCTCAGCCAAAAGAAGA+CGG | - | chr7_3:64999788-64999807 | Msa1116950:intron | 40.0% | |
GGACGGTTACAACTGAAATA+TGG | + | chr7_3:64999931-64999950 | None:intergenic | 40.0% | |
CTGTATTATGTTGGCAACTG+AGG | - | chr7_3:65000297-65000316 | Msa1116950:intron | 40.0% | |
GATTGCATCTTCACTGTAGA+TGG | + | chr7_3:65000645-65000664 | None:intergenic | 40.0% | |
CCTCCTTAAAGGAGCAATTA+AGG | + | chr7_3:65000670-65000689 | None:intergenic | 40.0% | |
! | CCTTAATTGCTCCTTTAAGG+AGG | - | chr7_3:65000667-65000686 | Msa1116950:intron | 40.0% |
CATAGTGCATACCTCCTTAA+AGG | + | chr7_3:65000681-65000700 | None:intergenic | 40.0% | |
TCACCACAGAAAGAAGAATG+TGG | - | chr7_3:65000855-65000874 | Msa1116950:intron | 40.0% | |
CACCACAGAAAGAAGAATGT+GGG | - | chr7_3:65000856-65000875 | Msa1116950:intron | 40.0% | |
! | AGGTGTTATCGAATGCTTTG+AGG | - | chr7_3:65000909-65000928 | Msa1116950:CDS | 40.0% |
! | GGTGTTATCGAATGCTTTGA+GGG | - | chr7_3:65000910-65000929 | Msa1116950:CDS | 40.0% |
! | GTCTGCTTTGTTCTTGAGAA+TGG | + | chr7_3:65001199-65001218 | None:intergenic | 40.0% |
GAATATCTGTCCGATGAGAA+AGG | - | chr7_3:65001486-65001505 | Msa1116950:intron | 40.0% | |
ACTTTCATACCCTTGTCTGA+TGG | + | chr7_3:65001544-65001563 | None:intergenic | 40.0% | |
! | CAGACAAGGGTATGAAAGTA+TGG | - | chr7_3:65001545-65001564 | Msa1116950:intron | 40.0% |
TGTTGACCATCAAGGACAAA+AGG | + | chr7_3:65001874-65001893 | None:intergenic | 40.0% | |
ATTCCTTCGCTGAAGAAATC+CGG | - | chr7_3:65001917-65001936 | Msa1116950:intron | 40.0% | |
GTAAGAAACTCAGAAAGCTC+GGG | + | chr7_3:65001944-65001963 | None:intergenic | 40.0% | |
! | AAATTTCTGCAGGCATTGCT+GGG | - | chr7_3:65001966-65001985 | Msa1116950:intron | 40.0% |
! | TCTGTAAACTAGCTTGTGGA+AGG | - | chr7_3:65002017-65002036 | Msa1116950:intron | 40.0% |
! | CTGTAAACTAGCTTGTGGAA+GGG | - | chr7_3:65002018-65002037 | Msa1116950:intron | 40.0% |
! | TTCAATACCGGGTTAGGATT+TGG | - | chr7_3:65002064-65002083 | Msa1116950:intron | 40.0% |
! | TCAATACCGGGTTAGGATTT+GGG | - | chr7_3:65002065-65002084 | Msa1116950:intron | 40.0% |
AACTAACCCAAATCCTAACC+CGG | + | chr7_3:65002074-65002093 | None:intergenic | 40.0% | |
!! | GGTTAGGATTTGGGTTAGTT+TGG | - | chr7_3:65002074-65002093 | Msa1116950:intron | 40.0% |
!! | TTGGGTTAGTTTGGCTTTCT+TGG | - | chr7_3:65002083-65002102 | Msa1116950:intron | 40.0% |
!! | TGGGTTAGTTTGGCTTTCTT+GGG | - | chr7_3:65002084-65002103 | Msa1116950:intron | 40.0% |
TTGGGCAGTAAGTAAGCTAA+GGG | - | chr7_3:65002102-65002121 | Msa1116950:intron | 40.0% | |
GAAGTTGGGTTTGAAAGAAG+AGG | - | chr7_3:65002156-65002175 | Msa1116950:intron | 40.0% | |
GGGTTTGAAAGAAGAGGAAA+TGG | - | chr7_3:65002162-65002181 | Msa1116950:intron | 40.0% | |
AGATATTTACTTCGGCTCTG+CGG | - | chr7_3:65002210-65002229 | Msa1116950:intron | 40.0% | |
!! | TTGATGTAGGAAGCATTGCT+TGG | - | chr7_3:65002414-65002433 | Msa1116950:five_prime_UTR | 40.0% |
AAAGTCGTTCAACCAATGGC+GGG | + | chr7_3:64997668-64997687 | None:intergenic | 45.0% | |
CAAAGTCGTTCAACCAATGG+CGG | + | chr7_3:64997669-64997688 | None:intergenic | 45.0% | |
TGTTGTTGTAAGACAAGGCC+TGG | + | chr7_3:64997890-64997909 | None:intergenic | 45.0% | |
AACTTTCGGGGGAAAGTTTG+GGG | - | chr7_3:64998020-64998039 | Msa1116950:CDS | 45.0% | |
TCAACTGATACAGGCCATTG+AGG | + | chr7_3:64998427-64998446 | None:intergenic | 45.0% | |
ATTCAGCGGTTCCAGACTTT+AGG | + | chr7_3:64998952-64998971 | None:intergenic | 45.0% | |
TGCTTGTTCCATACTTCAGC+AGG | - | chr7_3:64999269-64999288 | Msa1116950:intron | 45.0% | |
TATTTCGGCAGGTGAGGTAA+GGG | - | chr7_3:64999481-64999500 | Msa1116950:intron | 45.0% | |
! | AGTTCTAACCAAGAGGCTCA+GGG | - | chr7_3:64999514-64999533 | Msa1116950:CDS | 45.0% |
AAGTTCCTTTACCCTACAGC+AGG | + | chr7_3:64999707-64999726 | None:intergenic | 45.0% | |
GCTGTAGGGTAAAGGAACTT+AGG | - | chr7_3:64999707-64999726 | Msa1116950:intron | 45.0% | |
TAGCGGTGCAAAGGAAGTTA+GGG | - | chr7_3:64999740-64999759 | Msa1116950:intron | 45.0% | |
! | TTTCTCTGGTTTCTTACCGG+AGG | + | chr7_3:64999815-64999834 | None:intergenic | 45.0% |
ATTTCAGTTGTAACCGTCCC+TGG | - | chr7_3:64999932-64999951 | Msa1116950:intron | 45.0% | |
AGTGTATGTGTGTGTGTGTG+TGG | + | chr7_3:65000224-65000243 | None:intergenic | 45.0% | |
TTATGTTGGCAACTGAGGGA+TGG | - | chr7_3:65000302-65000321 | Msa1116950:intron | 45.0% | |
ACTGAGGGATGGCATTAAAC+AGG | - | chr7_3:65000313-65000332 | Msa1116950:intron | 45.0% | |
TGAGCCCCTCTATTAGAGAA+AGG | + | chr7_3:65000363-65000382 | None:intergenic | 45.0% | |
AGCCCACATTCTTCTTTCTG+TGG | + | chr7_3:65000861-65000880 | None:intergenic | 45.0% | |
CTGTGTTTCAGTGAGCTTCA+CGG | - | chr7_3:65001015-65001034 | Msa1116950:CDS | 45.0% | |
! | GGAGCACTATCATATGCTAG+AGG | - | chr7_3:65001036-65001055 | Msa1116950:CDS | 45.0% |
AGGTCAGACTACGAACAACT+TGG | + | chr7_3:65001663-65001682 | None:intergenic | 45.0% | |
! | TGAGAGCCTTTTGTCCTTGA+TGG | - | chr7_3:65001865-65001884 | Msa1116950:CDS | 45.0% |
! | CAAATTTCTGCAGGCATTGC+TGG | - | chr7_3:65001965-65001984 | Msa1116950:intron | 45.0% |
! | TAACCCGGTATTGAACAAGC+TGG | + | chr7_3:65002059-65002078 | None:intergenic | 45.0% |
! | AGCTTGTTCAATACCGGGTT+AGG | - | chr7_3:65002058-65002077 | Msa1116950:intron | 45.0% |
CTTGGGCAGTAAGTAAGCTA+AGG | - | chr7_3:65002101-65002120 | Msa1116950:intron | 45.0% | |
CTTGCTGATGCTGACAATTG+TGG | + | chr7_3:65002128-65002147 | None:intergenic | 45.0% | |
TCAGCATCAGCAAGAATGCA+GGG | - | chr7_3:65002134-65002153 | Msa1116950:intron | 45.0% | |
AGCAAGAATGCAGGGAAGTT+GGG | - | chr7_3:65002142-65002161 | Msa1116950:intron | 45.0% | |
! | CGCCATTGGTTGAACGACTT+TGG | - | chr7_3:64997667-64997686 | Msa1116950:three_prime_UTR | 50.0% |
GTCTCTGCACCATCTTCTGA+AGG | + | chr7_3:64997838-64997857 | None:intergenic | 50.0% | |
GTTGTAAGACAAGGCCTGGA+GGG | + | chr7_3:64997886-64997905 | None:intergenic | 50.0% | |
TGTTGTAAGACAAGGCCTGG+AGG | + | chr7_3:64997887-64997906 | None:intergenic | 50.0% | |
!! | ATCGACTCGGCAGATAGACT+TGG | + | chr7_3:64998349-64998368 | None:intergenic | 50.0% |
AAGTCTATCTGCCGAGTCGA+TGG | - | chr7_3:64998348-64998367 | Msa1116950:CDS | 50.0% | |
TGATACAGGCCATTGAGGTG+AGG | + | chr7_3:64998422-64998441 | None:intergenic | 50.0% | |
CCTTGGGTGTCAACTGATAC+AGG | + | chr7_3:64998436-64998455 | None:intergenic | 50.0% | |
CCTGTATCAGTTGACACCCA+AGG | - | chr7_3:64998433-64998452 | Msa1116950:intron | 50.0% | |
GTATTTCGGCAGGTGAGGTA+AGG | - | chr7_3:64999480-64999499 | Msa1116950:intron | 50.0% | |
! | GAGTTCTAACCAAGAGGCTC+AGG | - | chr7_3:64999513-64999532 | Msa1116950:CDS | 50.0% |
GTAGCGGTGCAAAGGAAGTT+AGG | - | chr7_3:64999739-64999758 | Msa1116950:intron | 50.0% | |
CGTGAAGCTCACTGAAACAC+AGG | + | chr7_3:65001017-65001036 | None:intergenic | 50.0% | |
AAACTCAGAAAGCTCGGGAC+CGG | + | chr7_3:65001939-65001958 | None:intergenic | 50.0% | |
! | GCGTCCAGCTTGTTCAATAC+CGG | - | chr7_3:65002052-65002071 | Msa1116950:intron | 50.0% |
! | CGTCCAGCTTGTTCAATACC+GGG | - | chr7_3:65002053-65002072 | Msa1116950:intron | 50.0% |
GTCAGCATCAGCAAGAATGC+AGG | - | chr7_3:65002133-65002152 | Msa1116950:intron | 50.0% | |
CAGCAAGAATGCAGGGAAGT+TGG | - | chr7_3:65002141-65002160 | Msa1116950:intron | 50.0% | |
GGGTAGGTATGAGAGGCCAT+CGG | + | chr7_3:64997866-64997885 | None:intergenic | 55.0% | |
TAAGACAAGGCCTGGAGGGT+AGG | + | chr7_3:64997882-64997901 | None:intergenic | 55.0% | |
CACTGGTAACTGAGCACGTC+TGG | + | chr7_3:64998313-64998332 | None:intergenic | 55.0% | |
GAGTCGTATTTCGGCAGGTG+AGG | - | chr7_3:64999475-64999494 | Msa1116950:intron | 55.0% | |
GGTGAGGTAAGGGAGGCTAT+AGG | - | chr7_3:64999491-64999510 | Msa1116950:intron | 55.0% | |
GGTTTGAACCCTGAGCCTCT+TGG | + | chr7_3:64999525-64999544 | None:intergenic | 55.0% | |
!! | TGATAGCGGATGCCTGCTGT+AGG | - | chr7_3:64999692-64999711 | Msa1116950:intron | 55.0% |
!! | GATAGCGGATGCCTGCTGTA+GGG | - | chr7_3:64999693-64999712 | Msa1116950:intron | 55.0% |
GGATGCCTGCTGTAGGGTAA+AGG | - | chr7_3:64999699-64999718 | Msa1116950:intron | 55.0% | |
GCCAAAAGAAGACGGTCCTC+CGG | - | chr7_3:64999796-64999815 | Msa1116950:intron | 55.0% | |
! | ACCGGAGGACCGTCTTCTTT+TGG | + | chr7_3:64999800-64999819 | None:intergenic | 55.0% |
GTCTGTGTGCGTGTGTATGC+TGG | + | chr7_3:65000192-65000211 | None:intergenic | 55.0% | |
GGACCGGATTTCTTCAGCGA+AGG | + | chr7_3:65001923-65001942 | None:intergenic | 55.0% | |
! | TGGCGGGCATGAGCCTGAAT+AGG | + | chr7_3:64997652-64997671 | None:intergenic | 60.0% |
TTCAGGCTCATGCCCGCCAT+TGG | - | chr7_3:64997653-64997672 | Msa1116950:three_prime_UTR | 60.0% | |
GGTGCAGAGACTGTGTCCGA+TGG | - | chr7_3:64997847-64997866 | Msa1116950:three_prime_UTR | 60.0% | |
GCCTCTCATACCTACCCTCC+AGG | - | chr7_3:64997869-64997888 | Msa1116950:three_prime_UTR | 60.0% | |
GCCTGGAGGGTAGGTATGAG+AGG | + | chr7_3:64997873-64997892 | None:intergenic | 60.0% | |
TTCGGCAGGTGAGGTAAGGG+AGG | - | chr7_3:64999484-64999503 | Msa1116950:intron | 60.0% | |
! | TCTGCAGGCATTGCTGGGAC+AGG | - | chr7_3:65001971-65001990 | Msa1116950:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 64997631 | 65002558 | 64997631 | ID=Msa1116950;Name=Msa1116950 |
chr7_3 | mRNA | 64997631 | 65002558 | 64997631 | ID=Msa1116950-mRNA-1;Parent=Msa1116950;Name=Msa1116950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=214|0.6|0.83|0.83|1|1|6|291|442 |
chr7_3 | exon | 64997631 | 64998414 | 64997631 | ID=Msa1116950-mRNA-1:exon:15444;Parent=Msa1116950-mRNA-1 |
chr7_3 | exon | 64999501 | 64999581 | 64999501 | ID=Msa1116950-mRNA-1:exon:15443;Parent=Msa1116950-mRNA-1 |
chr7_3 | exon | 65000372 | 65000446 | 65000372 | ID=Msa1116950-mRNA-1:exon:15442;Parent=Msa1116950-mRNA-1 |
chr7_3 | exon | 65000899 | 65001316 | 65000899 | ID=Msa1116950-mRNA-1:exon:15441;Parent=Msa1116950-mRNA-1 |
chr7_3 | exon | 65001735 | 65001915 | 65001735 | ID=Msa1116950-mRNA-1:exon:15440;Parent=Msa1116950-mRNA-1 |
chr7_3 | exon | 65002264 | 65002558 | 65002264 | ID=Msa1116950-mRNA-1:exon:15439;Parent=Msa1116950-mRNA-1 |
chr7_3 | five_prime_UTR | 65002345 | 65002558 | 65002345 | ID=Msa1116950-mRNA-1:five_prime_utr;Parent=Msa1116950-mRNA-1 |
chr7_3 | CDS | 65002264 | 65002344 | 65002264 | ID=Msa1116950-mRNA-1:cds;Parent=Msa1116950-mRNA-1 |
chr7_3 | CDS | 65001735 | 65001915 | 65001735 | ID=Msa1116950-mRNA-1:cds;Parent=Msa1116950-mRNA-1 |
chr7_3 | CDS | 65000899 | 65001316 | 65000899 | ID=Msa1116950-mRNA-1:cds;Parent=Msa1116950-mRNA-1 |
chr7_3 | CDS | 65000372 | 65000446 | 65000372 | ID=Msa1116950-mRNA-1:cds;Parent=Msa1116950-mRNA-1 |
chr7_3 | CDS | 64999501 | 64999581 | 64999501 | ID=Msa1116950-mRNA-1:cds;Parent=Msa1116950-mRNA-1 |
chr7_3 | CDS | 64997922 | 64998414 | 64997922 | ID=Msa1116950-mRNA-1:cds;Parent=Msa1116950-mRNA-1 |
chr7_3 | three_prime_UTR | 64997631 | 64997921 | 64997631 | ID=Msa1116950-mRNA-1:three_prime_utr;Parent=Msa1116950-mRNA-1 |
Gene Sequence |
Protein sequence |