Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043700.t1 | XP_003622672.1 | 90.4 | 355 | 34 | 0 | 1 | 355 | 1 | 355 | 2.60E-183 | 651.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043700.t1 | O64787 | 29.1 | 337 | 234 | 4 | 23 | 355 | 14 | 349 | 4.9e-37 | 156.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043700.t1 | G7KVW3 | 90.4 | 355 | 34 | 0 | 1 | 355 | 1 | 355 | 1.9e-183 | 651.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043700.t1 | MTR_7g050670 | 90.423 | 355 | 34 | 0 | 1 | 355 | 1 | 355 | 0.0 | 668 |
| MS.gene043700.t1 | MTR_4g088845 | 69.014 | 355 | 107 | 1 | 1 | 355 | 1 | 352 | 1.85e-175 | 497 |
| MS.gene043700.t1 | MTR_7g076570 | 69.774 | 354 | 100 | 2 | 1 | 354 | 29 | 375 | 5.76e-172 | 489 |
| MS.gene043700.t1 | MTR_7g076760 | 66.854 | 356 | 116 | 1 | 1 | 354 | 1 | 356 | 1.95e-171 | 486 |
| MS.gene043700.t1 | MTR_1g021820 | 25.887 | 282 | 164 | 10 | 5 | 274 | 16 | 264 | 2.72e-12 | 68.2 |
| MS.gene043700.t1 | MTR_0049s0110 | 24.719 | 356 | 213 | 15 | 24 | 346 | 13 | 346 | 2.16e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043700.t1 | AT1G61330 | 31.157 | 337 | 227 | 4 | 23 | 355 | 14 | 349 | 1.34e-46 | 165 |
| MS.gene043700.t1 | AT1G61320 | 27.119 | 354 | 252 | 6 | 7 | 355 | 9 | 361 | 9.76e-39 | 144 |
Find 48 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCTTTGTTCAAGTAAT+TGG | 0.110828 | 7.4:-52521671 | None:intergenic |
| TCTATCAGAGGAAGCAATTT+TGG | 0.153697 | 7.4:-52521694 | None:intergenic |
| CCGATATAGCCAACAAAATT+TGG | 0.166151 | 7.4:+52521857 | MS.gene043700:CDS |
| CGAGAAGCACAATATTGTTT+TGG | 0.280542 | 7.4:+52522789 | MS.gene043700:CDS |
| TTCTCTTTGTTCAAGTAATT+GGG | 0.305039 | 7.4:-52521670 | None:intergenic |
| CACTTGGAACATCTGGTAAC+TGG | 0.354434 | 7.4:-52522115 | None:intergenic |
| TTTGTTCAAGTAATTGGGTT+TGG | 0.363522 | 7.4:-52521665 | None:intergenic |
| CCTTGAGCAATTCGAACAAT+TGG | 0.372454 | 7.4:-52522389 | None:intergenic |
| TTTGAGAATCGATTGTTGTA+AGG | 0.393815 | 7.4:+52522304 | MS.gene043700:CDS |
| AAGATCCTCTAGATCCTTGT+TGG | 0.402977 | 7.4:-52521997 | None:intergenic |
| TGCAAACCACTTGGAACATC+TGG | 0.415677 | 7.4:-52522122 | None:intergenic |
| ATGAACAATTTCACCAAAGA+TGG | 0.432770 | 7.4:-52522894 | None:intergenic |
| AGCTTCAATTGTTGATGGAT+GGG | 0.435576 | 7.4:+52522823 | MS.gene043700:CDS |
| AATCGATTGTTGTAAGGACT+TGG | 0.437577 | 7.4:+52522310 | MS.gene043700:CDS |
| GTTGCAATTGCATGTTTGAT+TGG | 0.439724 | 7.4:-52521756 | None:intergenic |
| CATTTATTCAATTCGCATGA+AGG | 0.441661 | 7.4:+52521894 | MS.gene043700:CDS |
| AGAAACATAGTTATATCGTA+TGG | 0.451009 | 7.4:-52522861 | None:intergenic |
| CAGTTACATATCGATCCTGT+TGG | 0.451921 | 7.4:+52521936 | MS.gene043700:CDS |
| CTGCAACAACCGTGTCTCCT+AGG | 0.455983 | 7.4:+52521778 | MS.gene043700:CDS |
| AGCAAAACTTCAATCCCAAC+AGG | 0.463500 | 7.4:-52521951 | None:intergenic |
| GCTGACATGTGAGAAATCTT+TGG | 0.470936 | 7.4:-52522489 | None:intergenic |
| AGTCTCTATCAAACAAGAAT+CGG | 0.472631 | 7.4:-52521827 | None:intergenic |
| CCAATTGTTCGAATTGCTCA+AGG | 0.473509 | 7.4:+52522389 | MS.gene043700:CDS |
| GAGGGAGCTTCAATTGTTGA+TGG | 0.475203 | 7.4:+52522818 | MS.gene043700:CDS |
| GAGCTTCAATTGTTGATGGA+TGG | 0.475394 | 7.4:+52522822 | MS.gene043700:CDS |
| TGCAAAAGTTGCAAACCACT+TGG | 0.484261 | 7.4:-52522131 | None:intergenic |
| AGTTACATATCGATCCTGTT+GGG | 0.489783 | 7.4:+52521937 | MS.gene043700:CDS |
| CACATCACTCAAGAAATGTC+TGG | 0.508936 | 7.4:+52522176 | MS.gene043700:CDS |
| CTCAATAAGTTGAGGTGTAG+TGG | 0.510982 | 7.4:-52522519 | None:intergenic |
| GAAGTGTCTTCAACATTAGC+AGG | 0.518876 | 7.4:+52523711 | MS.gene043700:CDS |
| CACTACACCTCAACTTATTG+AGG | 0.526106 | 7.4:+52522520 | MS.gene043700:CDS |
| TTAGCAGGCAAGTTGAGGTC+TGG | 0.529422 | 7.4:+52523726 | MS.gene043700:CDS |
| GCTTCAATTGTTGATGGATG+GGG | 0.535016 | 7.4:+52522824 | MS.gene043700:CDS |
| TGGCTGTAAGGATTCGTGAT+GGG | 0.538732 | 7.4:+52522760 | MS.gene043700:CDS |
| CTCCTAGGTACAAAAGATCA+TGG | 0.540463 | 7.4:+52521793 | MS.gene043700:CDS |
| TTCCTCTGATAGACTTTCAG+AGG | 0.553992 | 7.4:+52521704 | MS.gene043700:CDS |
| CAACATTAGCAGGCAAGTTG+AGG | 0.555874 | 7.4:+52523721 | MS.gene043700:CDS |
| GGCTGTAAGGATTCGTGATG+GGG | 0.558929 | 7.4:+52522761 | MS.gene043700:CDS |
| CAATTGTTCGAATTGCTCAA+GGG | 0.587482 | 7.4:+52522390 | MS.gene043700:CDS |
| ATGCACCAACAAGGATCTAG+AGG | 0.596216 | 7.4:+52521992 | MS.gene043700:CDS |
| GTGGCTGTAAGGATTCGTGA+TGG | 0.602284 | 7.4:+52522759 | MS.gene043700:CDS |
| CAGACATTTCTTGAGTGATG+TGG | 0.610877 | 7.4:-52522175 | None:intergenic |
| ATTCAATTGTGAAACCAGGT+TGG | 0.613456 | 7.4:-52522034 | None:intergenic |
| GTCCTCTGAAAGTCTATCAG+AGG | 0.628087 | 7.4:-52521706 | None:intergenic |
| CAGTTACCAGATGTTCCAAG+TGG | 0.629758 | 7.4:+52522116 | MS.gene043700:CDS |
| GTAGATTCAATTGTGAAACC+AGG | 0.639369 | 7.4:-52522038 | None:intergenic |
| ATATATACCTCAATAAGTTG+AGG | 0.643108 | 7.4:-52522527 | None:intergenic |
| GTTGCAAATATGCACCAACA+AGG | 0.664165 | 7.4:+52521983 | MS.gene043700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTATGCATATTAATAA+AGG | - | chr7.4:52522717-52522736 | None:intergenic | 10.0% |
| !!! | ACAATTTTTTTTTTCTAAAA+GGG | - | chr7.4:52523239-52523258 | None:intergenic | 10.0% |
| !!! | ATGTATTATTTTTTAAAGAT+TGG | + | chr7.4:52522998-52523017 | MS.gene043700:intron | 10.0% |
| !! | AAGTCAATATTTATAACTAA+TGG | + | chr7.4:52523155-52523174 | MS.gene043700:intron | 15.0% |
| !!! | ATTTTTTAAAGATTGGTATT+TGG | + | chr7.4:52523005-52523024 | MS.gene043700:intron | 15.0% |
| !!! | GACAATTTTTTTTTTCTAAA+AGG | - | chr7.4:52523240-52523259 | None:intergenic | 15.0% |
| !! | ATAATAAATGCGTATAGATT+TGG | - | chr7.4:52522667-52522686 | None:intergenic | 20.0% |
| !! | ATAGATATATTGCATGATAT+AGG | - | chr7.4:52522629-52522648 | None:intergenic | 20.0% |
| !! | CAAGTTAAAAACACTAAAAT+TGG | + | chr7.4:52522079-52522098 | MS.gene043700:CDS | 20.0% |
| !! | GATAATTGAGTAATTCTAAA+TGG | + | chr7.4:52523078-52523097 | MS.gene043700:intron | 20.0% |
| !! | TAAAACCTATCAAGATATAA+AGG | - | chr7.4:52523500-52523519 | None:intergenic | 20.0% |
| !!! | AATATTGTTTTGGAAATTTG+AGG | + | chr7.4:52522799-52522818 | MS.gene043700:CDS | 20.0% |
| !!! | ATATTGTTTTGGAAATTTGA+GGG | + | chr7.4:52522800-52522819 | MS.gene043700:CDS | 20.0% |
| !!! | CTTTTCAAAAAAATATGTAG+GGG | - | chr7.4:52523322-52523341 | None:intergenic | 20.0% |
| !!! | GCTTTTCAAAAAAATATGTA+GGG | - | chr7.4:52523323-52523342 | None:intergenic | 20.0% |
| !!! | TATTAAACCTTGTCATTTTA+GGG | + | chr7.4:52522735-52522754 | MS.gene043700:intron | 20.0% |
| !!! | TATTGCTCTTTTTTTATCAA+AGG | - | chr7.4:52523360-52523379 | None:intergenic | 20.0% |
| !!! | TGCTTTTCAAAAAAATATGT+AGG | - | chr7.4:52523324-52523343 | None:intergenic | 20.0% |
| !!! | TTATTAAACCTTGTCATTTT+AGG | + | chr7.4:52522734-52522753 | MS.gene043700:intron | 20.0% |
| ! | ACAATTCAAAGTACAGAAAA+TGG | - | chr7.4:52523550-52523569 | None:intergenic | 25.0% |
| ! | ACATATTGGGTATAATGTTT+AGG | + | chr7.4:52523591-52523610 | MS.gene043700:intron | 25.0% |
| ! | AGAAACATAGTTATATCGTA+TGG | - | chr7.4:52522864-52522883 | None:intergenic | 25.0% |
| ! | AGAATTACTCAATTATCCTT+TGG | - | chr7.4:52523075-52523094 | None:intergenic | 25.0% |
| ! | ATATATACCTCAATAAGTTG+AGG | - | chr7.4:52522530-52522549 | None:intergenic | 25.0% |
| ! | ATGCACTTGAAAATATCAAA+AGG | - | chr7.4:52523277-52523296 | None:intergenic | 25.0% |
| ! | TAAAAAATTGAACGAAGAGT+TGG | - | chr7.4:52522356-52522375 | None:intergenic | 25.0% |
| ! | TAAACATTATACCCAATATG+TGG | - | chr7.4:52523592-52523611 | None:intergenic | 25.0% |
| ! | TGCACTTGAAAATATCAAAA+GGG | - | chr7.4:52523276-52523295 | None:intergenic | 25.0% |
| ! | TTCTCTTTGTTCAAGTAATT+GGG | - | chr7.4:52521673-52521692 | None:intergenic | 25.0% |
| !! | ATCAAAAGGGTCTTATAAAA+AGG | - | chr7.4:52523263-52523282 | None:intergenic | 25.0% |
| !! | TCAAAAGGGTCTTATAAAAA+GGG | - | chr7.4:52523262-52523281 | None:intergenic | 25.0% |
| !!! | CTTCGTTCAATTTTTTATCA+TGG | + | chr7.4:52522359-52522378 | MS.gene043700:CDS | 25.0% |
| AAAAGAGCAATAAGTTTACG+TGG | + | chr7.4:52523368-52523387 | MS.gene043700:intron | 30.0% | |
| AAAGAATAAATGCCATGGAT+TGG | - | chr7.4:52523038-52523057 | None:intergenic | 30.0% | |
| AAAGAGCAATAAGTTTACGT+GGG | + | chr7.4:52523369-52523388 | MS.gene043700:intron | 30.0% | |
| AACTCAAAGTCATGAAATAG+AGG | - | chr7.4:52523652-52523671 | None:intergenic | 30.0% | |
| AGTCTCTATCAAACAAGAAT+CGG | - | chr7.4:52521830-52521849 | None:intergenic | 30.0% | |
| ATGAACAATTTCACCAAAGA+TGG | - | chr7.4:52522897-52522916 | None:intergenic | 30.0% | |
| ATTACTCAATTATCCTTTGG+TGG | - | chr7.4:52523072-52523091 | None:intergenic | 30.0% | |
| CATTTATTCAATTCGCATGA+AGG | + | chr7.4:52521894-52521913 | MS.gene043700:CDS | 30.0% | |
| GTTCTCTTTGTTCAAGTAAT+TGG | - | chr7.4:52521674-52521693 | None:intergenic | 30.0% | |
| TCTCAAAAATTGTCCATCTT+TGG | + | chr7.4:52522881-52522900 | MS.gene043700:CDS | 30.0% | |
| TCTGTACTTTGAATTGTTTG+TGG | + | chr7.4:52523553-52523572 | MS.gene043700:intron | 30.0% | |
| TTTGAGAATCGATTGTTGTA+AGG | + | chr7.4:52522304-52522323 | MS.gene043700:CDS | 30.0% | |
| TTTGTTCAAGTAATTGGGTT+TGG | - | chr7.4:52521668-52521687 | None:intergenic | 30.0% | |
| ! | AAGGGTCTTATAATTAGAGA+CGG | - | chr7.4:52523221-52523240 | None:intergenic | 30.0% |
| ! | ATCCATGGCATTTATTCTTT+TGG | + | chr7.4:52523038-52523057 | MS.gene043700:intron | 30.0% |
| ! | ATCCATTTTCTTCCACATAT+TGG | + | chr7.4:52523577-52523596 | MS.gene043700:intron | 30.0% |
| ! | GATTGCATGTATTCTTTTGA+TGG | - | chr7.4:52522449-52522468 | None:intergenic | 30.0% |
| ! | TCCATTTTCTTCCACATATT+GGG | + | chr7.4:52523578-52523597 | MS.gene043700:intron | 30.0% |
| ! | TTGAAGTTTTGCTTAAGAGA+TGG | + | chr7.4:52521961-52521980 | MS.gene043700:CDS | 30.0% |
| ! | TTTCATGACTTTGAGTTTCA+TGG | + | chr7.4:52523655-52523674 | MS.gene043700:intron | 30.0% |
| !! | CCAAATTTTGTTGGCTATAT+CGG | - | chr7.4:52521860-52521879 | None:intergenic | 30.0% |
| !!! | AGTTACCACTGTTTTTATTG+TGG | - | chr7.4:52523454-52523473 | None:intergenic | 30.0% |
| !!! | GTTACCACTGTTTTTATTGT+GGG | - | chr7.4:52523453-52523472 | None:intergenic | 30.0% |
| !!! | TTGGGTTTGGTTTTCAAAAT+TGG | - | chr7.4:52521655-52521674 | None:intergenic | 30.0% |
| AATCGATTGTTGTAAGGACT+TGG | + | chr7.4:52522310-52522329 | MS.gene043700:CDS | 35.0% | |
| ACCCAATATGTGGAAGAAAA+TGG | - | chr7.4:52523582-52523601 | None:intergenic | 35.0% | |
| AGTTACATATCGATCCTGTT+GGG | + | chr7.4:52521937-52521956 | MS.gene043700:CDS | 35.0% | |
| ATTCAATTGTGAAACCAGGT+TGG | - | chr7.4:52522037-52522056 | None:intergenic | 35.0% | |
| CAATTGTTCGAATTGCTCAA+GGG | + | chr7.4:52522390-52522409 | MS.gene043700:CDS | 35.0% | |
| CACCAAAAGAATAAATGCCA+TGG | - | chr7.4:52523043-52523062 | None:intergenic | 35.0% | |
| CCGATATAGCCAACAAAATT+TGG | + | chr7.4:52521857-52521876 | MS.gene043700:CDS | 35.0% | |
| GTAGATTCAATTGTGAAACC+AGG | - | chr7.4:52522041-52522060 | None:intergenic | 35.0% | |
| GTTGCAATTGCATGTTTGAT+TGG | - | chr7.4:52521759-52521778 | None:intergenic | 35.0% | |
| TGTGGGACGTGAATATATAA+AGG | - | chr7.4:52523436-52523455 | None:intergenic | 35.0% | |
| ! | AGCTTCAATTGTTGATGGAT+GGG | + | chr7.4:52522823-52522842 | MS.gene043700:CDS | 35.0% |
| ! | CATGGCATTTATTCTTTTGG+TGG | + | chr7.4:52523041-52523060 | MS.gene043700:intron | 35.0% |
| ! | CTATCAGAGGAAGCAATTTT+GGG | - | chr7.4:52521696-52521715 | None:intergenic | 35.0% |
| ! | CTATTGCAGCCAAATTTTGT+TGG | - | chr7.4:52521869-52521888 | None:intergenic | 35.0% |
| ! | TCTATCAGAGGAAGCAATTT+TGG | - | chr7.4:52521697-52521716 | None:intergenic | 35.0% |
| !! | CGAGAAGCACAATATTGTTT+TGG | + | chr7.4:52522789-52522808 | MS.gene043700:CDS | 35.0% |
| !! | CTCTGTTTCTGAATTGTTTG+TGG | + | chr7.4:52523620-52523639 | MS.gene043700:intron | 35.0% |
| AACTCTCATTCATGCACTGA+AGG | + | chr7.4:52523407-52523426 | MS.gene043700:intron | 40.0% | |
| AAGATCCTCTAGATCCTTGT+TGG | - | chr7.4:52522000-52522019 | None:intergenic | 40.0% | |
| ACGTCCCACAATAAAAACAG+TGG | + | chr7.4:52523446-52523465 | MS.gene043700:intron | 40.0% | |
| AGCAAAACTTCAATCCCAAC+AGG | - | chr7.4:52521954-52521973 | None:intergenic | 40.0% | |
| CACATCACTCAAGAAATGTC+TGG | + | chr7.4:52522176-52522195 | MS.gene043700:CDS | 40.0% | |
| CACTACACCTCAACTTATTG+AGG | + | chr7.4:52522520-52522539 | MS.gene043700:CDS | 40.0% | |
| CAGACATTTCTTGAGTGATG+TGG | - | chr7.4:52522178-52522197 | None:intergenic | 40.0% | |
| CAGTTACATATCGATCCTGT+TGG | + | chr7.4:52521936-52521955 | MS.gene043700:CDS | 40.0% | |
| CCAATTGTTCGAATTGCTCA+AGG | + | chr7.4:52522389-52522408 | MS.gene043700:CDS | 40.0% | |
| CCTTGAGCAATTCGAACAAT+TGG | - | chr7.4:52522392-52522411 | None:intergenic | 40.0% | |
| CTCCTAGGTACAAAAGATCA+TGG | + | chr7.4:52521793-52521812 | MS.gene043700:CDS | 40.0% | |
| GCTGACATGTGAGAAATCTT+TGG | - | chr7.4:52522492-52522511 | None:intergenic | 40.0% | |
| GGCTGCCTTTATATCTTGAT+AGG | + | chr7.4:52523492-52523511 | MS.gene043700:intron | 40.0% | |
| GTTGCAAATATGCACCAACA+AGG | + | chr7.4:52521983-52522002 | MS.gene043700:CDS | 40.0% | |
| TGCAAAAGTTGCAAACCACT+TGG | - | chr7.4:52522134-52522153 | None:intergenic | 40.0% | |
| TTCCTCTGATAGACTTTCAG+AGG | + | chr7.4:52521704-52521723 | MS.gene043700:CDS | 40.0% | |
| ! | CACCATGATCTTTTGTACCT+AGG | - | chr7.4:52521798-52521817 | None:intergenic | 40.0% |
| ! | CTCAATAAGTTGAGGTGTAG+TGG | - | chr7.4:52522522-52522541 | None:intergenic | 40.0% |
| ! | GAAGTGTCTTCAACATTAGC+AGG | + | chr7.4:52523711-52523730 | MS.gene043700:CDS | 40.0% |
| ! | GAGCTTCAATTGTTGATGGA+TGG | + | chr7.4:52522822-52522841 | MS.gene043700:CDS | 40.0% |
| ! | GCTTCAATTGTTGATGGATG+GGG | + | chr7.4:52522824-52522843 | MS.gene043700:CDS | 40.0% |
| ! | GGTCTTATAATTAGAGACGG+AGG | - | chr7.4:52523218-52523237 | None:intergenic | 40.0% |
| ! | TCTTTTGTACCTAGGAGACA+CGG | - | chr7.4:52521790-52521809 | None:intergenic | 40.0% |
| !!! | AACCTTGTCATTTTAGGGAG+TGG | + | chr7.4:52522740-52522759 | MS.gene043700:intron | 40.0% |
| AGCCACTCCCTAAAATGACA+AGG | - | chr7.4:52522745-52522764 | None:intergenic | 45.0% | |
| ATGCACCAACAAGGATCTAG+AGG | + | chr7.4:52521992-52522011 | MS.gene043700:CDS | 45.0% | |
| CAACATTAGCAGGCAAGTTG+AGG | + | chr7.4:52523721-52523740 | MS.gene043700:CDS | 45.0% | |
| CACTTGGAACATCTGGTAAC+TGG | - | chr7.4:52522118-52522137 | None:intergenic | 45.0% | |
| CAGTTACCAGATGTTCCAAG+TGG | + | chr7.4:52522116-52522135 | MS.gene043700:CDS | 45.0% | |
| GAGGGAGCTTCAATTGTTGA+TGG | + | chr7.4:52522818-52522837 | MS.gene043700:CDS | 45.0% | |
| TGCAAACCACTTGGAACATC+TGG | - | chr7.4:52522125-52522144 | None:intergenic | 45.0% | |
| TGGCTGTAAGGATTCGTGAT+GGG | + | chr7.4:52522760-52522779 | MS.gene043700:CDS | 45.0% | |
| TTTGGATCTCAGCCAATCCA+TGG | + | chr7.4:52523023-52523042 | MS.gene043700:intron | 45.0% | |
| ! | GTCCTCTGAAAGTCTATCAG+AGG | - | chr7.4:52521709-52521728 | None:intergenic | 45.0% |
| ! | TTTGGTGGACAATCCACCAA+AGG | + | chr7.4:52523056-52523075 | MS.gene043700:intron | 45.0% |
| !! | CATTTTAGGGAGTGGCTGTA+AGG | + | chr7.4:52522748-52522767 | MS.gene043700:intron | 45.0% |
| !! | GAGCTGACTTTTTACCAACC+TGG | + | chr7.4:52522020-52522039 | MS.gene043700:CDS | 45.0% |
| !!! | TTTTTTAATTATAAAATTGA+AGG | + | chr7.4:52523130-52523149 | MS.gene043700:intron | 5.0% |
| ACTCCCCATTCATGCACTGA+AGG | + | chr7.4:52523471-52523490 | MS.gene043700:intron | 50.0% | |
| CAGCCTTCAGTGCATGAATG+GGG | - | chr7.4:52523413-52523432 | None:intergenic | 50.0% | |
| GCAGCCTTCAGTGCATGAAT+GGG | - | chr7.4:52523414-52523433 | None:intergenic | 50.0% | |
| GGCTGTAAGGATTCGTGATG+GGG | + | chr7.4:52522761-52522780 | MS.gene043700:CDS | 50.0% | |
| GTGGCTGTAAGGATTCGTGA+TGG | + | chr7.4:52522759-52522778 | MS.gene043700:CDS | 50.0% | |
| ! | TTAGCAGGCAAGTTGAGGTC+TGG | + | chr7.4:52523726-52523745 | MS.gene043700:CDS | 50.0% |
| CTGCAACAACCGTGTCTCCT+AGG | + | chr7.4:52521778-52521797 | MS.gene043700:CDS | 55.0% | |
| GGCAGCCTTCAGTGCATGAA+TGG | - | chr7.4:52523415-52523434 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 52521648 | 52523755 | 52521648 | ID=MS.gene043700 |
| chr7.4 | mRNA | 52521648 | 52523755 | 52521648 | ID=MS.gene043700.t1;Parent=MS.gene043700 |
| chr7.4 | exon | 52521648 | 52522541 | 52521648 | ID=MS.gene043700.t1.exon1;Parent=MS.gene043700.t1 |
| chr7.4 | CDS | 52521648 | 52522541 | 52521648 | ID=cds.MS.gene043700.t1;Parent=MS.gene043700.t1 |
| chr7.4 | exon | 52522756 | 52522920 | 52522756 | ID=MS.gene043700.t1.exon2;Parent=MS.gene043700.t1 |
| chr7.4 | CDS | 52522756 | 52522920 | 52522756 | ID=cds.MS.gene043700.t1;Parent=MS.gene043700.t1 |
| chr7.4 | exon | 52523690 | 52523755 | 52523690 | ID=MS.gene043700.t1.exon3;Parent=MS.gene043700.t1 |
| chr7.4 | CDS | 52523690 | 52523755 | 52523690 | ID=cds.MS.gene043700.t1;Parent=MS.gene043700.t1 |
| Gene Sequence |
| Protein sequence |
