AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055877


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055877.t1 MTR_8g062300 53.527 482 145 10 1 409 1 476 5.69e-159 457
MS.gene055877.t1 MTR_8g062080 51.701 441 142 9 23 409 21 444 1.48e-134 394
MS.gene055877.t1 MTR_8g070950 50.545 459 151 10 1 409 1 433 4.61e-132 387
MS.gene055877.t1 MTR_8g062010 53.349 433 146 12 23 409 7 429 2.39e-130 382
MS.gene055877.t1 MTR_8g062310 50.119 421 158 8 24 409 24 427 1.22e-128 378
MS.gene055877.t1 MTR_2g086020 55.278 360 114 4 51 409 1 314 6.03e-121 354
MS.gene055877.t1 MTR_8g058965 45.957 470 169 13 9 409 2 455 6.74e-118 351
MS.gene055877.t1 MTR_8g469020 45.833 456 168 9 23 409 5 450 7.98e-118 351
MS.gene055877.t1 MTR_8g467790 50.829 362 126 10 24 351 147 490 3.28e-104 318
MS.gene055877.t1 MTR_4g050250 43.578 436 150 13 1 356 1 420 8.68e-97 296
MS.gene055877.t1 MTR_8g468810 36.134 476 223 13 1 409 1 462 3.86e-75 241
MS.gene055877.t1 MTR_2g083840 34.899 447 218 13 25 409 21 456 5.70e-64 212
MS.gene055877.t1 MTR_8g058970 35.163 492 220 19 1 409 1 476 4.10e-63 211
MS.gene055877.t1 MTR_4g032730 33.333 483 224 16 9 410 2 467 3.63e-60 202
MS.gene055877.t1 MTR_8g468760 35.431 429 222 16 21 409 5 418 1.10e-55 189
MS.gene055877.t1 MTR_8g062270 32.751 458 219 18 23 409 14 453 1.59e-53 184
MS.gene055877.t1 MTR_8g468810 35.309 388 172 12 1 323 1 374 3.22e-53 182
MS.gene055877.t1 MTR_8g077460 35.821 402 204 18 25 409 10 374 2.16e-52 179
MS.gene055877.t1 MTR_5g092960 31.158 475 238 14 7 410 6 462 5.32e-52 181
MS.gene055877.t1 MTR_8g468840 34.076 449 221 16 25 410 14 450 1.14e-50 177
MS.gene055877.t1 MTR_8g014260 32.983 476 226 20 1 409 1 450 1.88e-50 176
MS.gene055877.t1 MTR_8g468810 38.851 296 142 9 1 270 1 283 1.06e-46 163
MS.gene055877.t1 MTR_8g468810 38.851 296 142 9 1 270 1 283 1.19e-46 163
MS.gene055877.t1 MTR_8g467800 32.553 470 238 17 1 409 1 452 2.01e-46 166
MS.gene055877.t1 MTR_8g468810 38.851 296 142 9 1 270 1 283 2.86e-46 163
MS.gene055877.t1 MTR_8g014160 34.442 421 221 18 16 409 32 424 6.97e-45 161
MS.gene055877.t1 MTR_8g445780 33.173 416 199 16 1 363 1 390 4.97e-44 158
MS.gene055877.t1 MTR_5g092960 30.709 381 182 11 7 320 6 371 3.08e-31 123
MS.gene055877.t1 MTR_1g041245 30.221 407 234 16 23 409 9 385 1.71e-29 118
MS.gene055877.t1 MTR_4g024710 43.182 132 72 3 278 409 218 346 9.85e-26 107
MS.gene055877.t1 MTR_7g115270 29.854 412 236 18 25 407 12 399 1.54e-25 107
MS.gene055877.t1 MTR_3g099800 64.103 78 27 1 321 397 18 95 2.22e-25 99.8
MS.gene055877.t1 MTR_8g014210 32.129 249 123 10 181 409 8 230 4.07e-25 102
MS.gene055877.t1 MTR_1089s0010 27.250 400 251 16 24 410 7 379 1.94e-24 104
MS.gene055877.t1 MTR_8g467800 34.130 293 160 12 1 274 1 279 2.65e-23 100
MS.gene055877.t1 MTR_7g098510 27.586 406 244 16 23 409 16 390 9.11e-23 99.4
MS.gene055877.t1 MTR_7g026500 24.818 411 257 13 23 409 12 394 4.03e-22 97.8
MS.gene055877.t1 MTR_7g098570 28.500 400 248 14 20 406 15 389 4.48e-22 98.6
MS.gene055877.t1 MTR_3g107100 28.710 411 253 17 25 414 11 402 7.82e-22 97.1
MS.gene055877.t1 MTR_7g098480 29.529 403 236 16 24 409 17 388 1.20e-21 97.1
MS.gene055877.t1 MTR_7g032380 28.928 401 217 19 23 409 9 355 1.60e-20 92.4
MS.gene055877.t1 MTR_3g107160 28.415 366 230 15 25 377 10 356 2.70e-20 92.4
MS.gene055877.t1 MTR_5g073420 25.679 405 259 17 23 414 9 384 2.95e-20 92.0
MS.gene055877.t1 MTR_4g024745 31.752 274 134 10 164 389 12 280 3.89e-20 90.1
MS.gene055877.t1 MTR_7g034115 30.214 374 209 16 24 377 10 351 5.80e-19 88.2
MS.gene055877.t1 MTR_5g008950 26.238 404 245 16 27 413 1 368 5.92e-19 88.2
MS.gene055877.t1 MTR_3g108150 26.555 418 230 20 25 409 13 386 1.51e-18 87.0
MS.gene055877.t1 MTR_7g056447 35.714 196 108 7 20 210 4 186 7.40e-18 84.0
MS.gene055877.t1 MTR_3g107120 29.737 380 212 15 25 375 9 362 7.43e-18 85.1
MS.gene055877.t1 MTR_5g080710 27.494 411 229 17 24 382 32 425 8.43e-18 85.5
MS.gene055877.t1 MTR_4g039440 27.336 428 252 20 6 409 19 411 8.68e-18 85.1
MS.gene055877.t1 MTR_7g055943 26.634 413 253 17 21 410 36 421 1.54e-17 84.3
MS.gene055877.t1 MTR_5g058000 25.622 402 249 17 24 409 7 374 1.90e-17 84.0
MS.gene055877.t1 MTR_7g056420 26.735 389 224 15 25 397 9 352 2.43e-17 85.1
MS.gene055877.t1 MTR_7g056430 26.735 389 224 15 25 397 9 352 3.87e-17 84.3
MS.gene055877.t1 MTR_1g108820 28.536 403 245 20 24 408 7 384 5.34e-17 82.4
MS.gene055877.t1 MTR_3g082890 27.273 418 242 20 25 410 97 484 6.20e-17 82.8
MS.gene055877.t1 MTR_5g021550 38.854 157 65 9 25 163 19 162 6.79e-17 78.2
MS.gene055877.t1 MTR_5g084070 25.761 427 250 19 24 402 12 419 1.09e-16 82.0
MS.gene055877.t1 MTR_4g098590 28.831 385 209 20 27 377 1 354 1.31e-16 81.3
MS.gene055877.t1 MTR_3g108560 26.683 401 246 15 25 409 20 388 2.10e-16 80.9
MS.gene055877.t1 MTR_6g044560 24.169 451 257 17 2 409 155 563 2.58e-16 81.3
MS.gene055877.t1 MTR_6g045333 24.510 408 264 14 24 409 60 445 2.81e-16 80.9
MS.gene055877.t1 MTR_3g071850 24.682 393 258 14 24 397 23 396 5.12e-16 80.9
MS.gene055877.t1 MTR_3g082890 24.777 448 252 19 25 410 17 441 6.66e-16 79.7
MS.gene055877.t1 MTR_3g036250 25.570 395 248 17 24 407 4 363 7.54e-16 79.0
MS.gene055877.t1 MTR_2g008320 27.073 410 249 21 19 408 46 425 8.89e-16 79.3
MS.gene055877.t1 MTR_6g011460 25.653 421 267 15 7 410 30 421 1.72e-15 78.2
MS.gene055877.t1 MTR_0543s0010 26.382 398 246 15 25 409 86 449 2.74e-15 77.8
MS.gene055877.t1 MTR_6g044572 24.528 424 245 20 24 409 1 387 3.16e-15 77.4
MS.gene055877.t1 MTR_7g033990 26.471 374 225 16 23 377 9 351 3.18e-15 77.4
MS.gene055877.t1 MTR_5g045510 25.187 401 253 15 22 411 9 373 6.44e-15 76.3
MS.gene055877.t1 MTR_8g014230 45.570 79 41 2 320 398 17 93 6.50e-15 70.9
MS.gene055877.t1 MTR_6g022360 27.151 372 221 15 21 377 39 375 2.42e-14 74.7
MS.gene055877.t1 MTR_3g467400 24.010 404 250 13 24 409 2 366 2.58e-14 74.3
MS.gene055877.t1 MTR_0492s0020 26.776 366 221 15 25 377 86 417 2.72e-14 74.7
MS.gene055877.t1 MTR_7g034110 31.507 219 118 7 24 227 10 211 6.04e-14 73.2
MS.gene055877.t1 MTR_2g036470 24.566 403 251 17 32 409 21 395 1.15e-13 72.4
MS.gene055877.t1 MTR_2g007400 23.488 430 259 18 19 410 6 403 1.20e-13 72.4
MS.gene055877.t1 MTR_3g105060 26.161 409 232 20 23 409 12 372 1.50e-13 72.0
MS.gene055877.t1 MTR_7g075820 25.301 415 255 17 25 410 6 394 9.85e-13 69.7
MS.gene055877.t1 MTR_2g007500 31.472 197 108 8 23 213 12 187 7.63e-12 66.6
MS.gene055877.t1 MTR_4g093690 29.665 209 112 11 25 217 18 207 9.37e-12 65.5
MS.gene055877.t1 MTR_4g024720 34.965 143 70 6 1 135 1 128 1.53e-11 63.9
MS.gene055877.t1 MTR_8g085430 32.195 205 114 9 21 212 7 199 1.60e-11 65.5
MS.gene055877.t1 MTR_8g062650 63.636 44 16 0 186 229 2 45 6.62e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055877.t1 AT4G10400 23.877 423 270 13 24 409 1 408 1.35e-15 78.6
MS.gene055877.t1 AT4G10400 23.877 423 270 13 24 409 1 408 1.35e-15 78.6
MS.gene055877.t1 AT4G10400 23.877 423 270 13 24 409 1 408 1.35e-15 78.6
MS.gene055877.t1 AT3G42770 30.348 201 118 7 27 214 1 192 1.17e-13 73.2
MS.gene055877.t1 AT1G78760 23.043 460 268 16 14 407 1 440 6.71e-13 70.5
MS.gene055877.t1 AT2G26860 31.220 205 111 10 24 214 1 189 2.03e-12 68.9
MS.gene055877.t1 AT2G26860 31.220 205 111 10 24 214 1 189 2.03e-12 68.9
MS.gene055877.t1 AT1G69630 23.341 437 256 14 24 396 17 438 4.12e-12 68.2
MS.gene055877.t1 AT5G22700 23.096 394 249 12 25 387 43 413 4.86e-12 67.8
MS.gene055877.t1 AT5G50270 24.413 426 247 15 24 392 1 408 5.00e-12 67.8
MS.gene055877.t1 AT1G55030 24.561 456 269 20 4 409 1 431 1.32e-11 66.2
MS.gene055877.t1 AT4G09920 27.103 214 138 6 24 231 1 202 3.66e-11 63.9
MS.gene055877.t1 AT4G09920 27.103 214 138 6 24 231 1 202 3.66e-11 63.9
MS.gene055877.t1 AT4G09920 27.103 214 138 6 24 231 1 202 3.66e-11 63.9
MS.gene055877.t1 AT3G59200 31.683 202 108 10 25 211 7 193 3.73e-11 65.1
MS.gene055877.t1 AT3G59200 31.683 202 108 10 25 211 7 193 3.88e-11 64.7
MS.gene055877.t1 AT4G09920 27.103 214 138 6 24 231 1 202 5.10e-11 63.9
MS.gene055877.t1 AT4G09920 27.103 214 138 6 24 231 1 202 5.10e-11 63.9
MS.gene055877.t1 AT1G55660 31.313 198 114 10 24 211 52 237 7.12e-11 64.3
MS.gene055877.t1 AT1G55660 31.313 198 114 10 24 211 52 237 8.31e-11 63.5
MS.gene055877.t1 AT2G04230 25.111 450 257 18 25 410 13 446 9.05e-11 63.9

Find 90 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACGAAGGATCTATCAATT+TGG 0.211457 8.3:-42694872 MS.gene055877:CDS
CTTTGGTCACAAAGTCTTTA+GGG 0.228938 8.3:+42694962 None:intergenic
CCCAAACCTGGAAACTTTGC+AGG 0.233508 8.3:-42695001 MS.gene055877:CDS
CCTGCAAAGTTTCCAGGTTT+GGG 0.262212 8.3:+42695001 None:intergenic
TGAAAACACTGCAGTCTTTA+CGG 0.271803 8.3:-42695138 MS.gene055877:intron
ACTTTGGTCACAAAGTCTTT+AGG 0.274506 8.3:+42694961 None:intergenic
ACCTGCAAAGTTTCCAGGTT+TGG 0.300500 8.3:+42695000 None:intergenic
TGATGTAAATCACGAAATTC+AGG 0.328876 8.3:+42694552 None:intergenic
AGTAAACCTGCAAAGTTTCC+AGG 0.354081 8.3:+42694995 None:intergenic
ATGTTTCAACTCAAATCTTC+TGG 0.358687 8.3:-42694511 MS.gene055877:CDS
TCTTCTTCTTCTGCTTTAGC+TGG 0.361008 8.3:+42696035 None:intergenic
GAAATTGTCATTGGCTGTTT+CGG 0.367190 8.3:+42694915 None:intergenic
GCAAATATATGGTCGGGCTC+TGG 0.367759 8.3:-42694074 MS.gene055877:CDS
TAATCTCTGGAAGGATCTTC+AGG 0.371732 8.3:-42695874 MS.gene055877:CDS
TCACTGAAGAAGCTGGAAAT+TGG 0.372767 8.3:-42695072 MS.gene055877:CDS
CAAATATATGGTCGGGCTCT+GGG 0.377373 8.3:-42694073 MS.gene055877:CDS
TGTTGGCAACTTTCACAGTA+TGG 0.380596 8.3:-42694845 MS.gene055877:CDS
AACGAAGGATCTATCAATTT+GGG 0.387155 8.3:-42694871 MS.gene055877:CDS
TTTGAATGTCGCGGGATTTG+CGG 0.388336 8.3:+42695778 None:intergenic
CGACAGGTTAAGTAGTTTAC+CGG 0.389505 8.3:-42695979 MS.gene055877:CDS
AATTCAGGATAATTTAGAAC+AGG 0.394075 8.3:+42694567 None:intergenic
TCTATCAATTTGGGTATTGT+TGG 0.395338 8.3:-42694862 MS.gene055877:CDS
TTGAAAGATTAGCAAATATA+TGG 0.400900 8.3:-42694085 MS.gene055877:CDS
GTCATTGGCTGTTTCGGAGC+TGG 0.401131 8.3:+42694921 None:intergenic
ACTGATCATGAAAAGACATT+TGG 0.423678 8.3:+42694045 None:intergenic
AAATCCTTCTATGTGAATAT+AGG 0.424387 8.3:+42694226 None:intergenic
GAAATAGTTTACTTTCTCTC+TGG 0.424400 8.3:-42695027 MS.gene055877:CDS
CTGACCTATATTCACATAGA+AGG 0.433553 8.3:-42694230 MS.gene055877:CDS
AGAATTGACTTGAGATAGAA+AGG 0.433981 8.3:+42695704 None:intergenic
CTCCTAGGTATCTTAATCTC+TGG 0.454079 8.3:-42695887 MS.gene055877:CDS
TCTCTCTGGCTCCCCAAACC+TGG 0.466364 8.3:-42695013 MS.gene055877:CDS
TCACTAACTTCGCCGTCGAC+AGG 0.472434 8.3:-42695995 MS.gene055877:CDS
ACGTGGATCCTTGCTTCCAT+TGG 0.480869 8.3:-42695675 MS.gene055877:CDS
ATTCACATAGAAGGATTTCA+AGG 0.482694 8.3:-42694221 MS.gene055877:CDS
ATTTCCAGCTTCTTCAGTGA+TGG 0.484197 8.3:+42695075 None:intergenic
GTTTCGGAGCTGGACAAAGT+TGG 0.492761 8.3:+42694931 None:intergenic
ATATGACATATTAGCGAGTC+CGG 0.494354 8.3:+42695960 None:intergenic
CTTCTATGTGAATATAGGTC+AGG 0.500493 8.3:+42694231 None:intergenic
GATGGAAAATGAACAGAAGA+AGG 0.507493 8.3:+42695093 None:intergenic
TCCTTCGTTTATATTAAAGT+AGG 0.513346 8.3:+42694885 None:intergenic
TCCGGCTGCCATGTTCTCAA+TGG 0.513864 8.3:+42694287 None:intergenic
CAAAGTTGGAACGAAAACTT+TGG 0.516256 8.3:+42694945 None:intergenic
GCATTGAGAAAGAAGGAAGC+CGG 0.516507 8.3:+42695603 None:intergenic
GGACCAAGTGAAATTGTCAT+TGG 0.520112 8.3:+42694906 None:intergenic
CATTGAGAAAGAAGGAAGCC+GGG 0.523422 8.3:+42695604 None:intergenic
ATTAGTAGCATTGAGAAAGA+AGG 0.531577 8.3:+42695596 None:intergenic
AGATTAGCAAATATATGGTC+GGG 0.538924 8.3:-42694080 MS.gene055877:CDS
TTGTTGAAGTTGAGTTCCAA+TGG 0.540180 8.3:+42695659 None:intergenic
CTACTAATATCGTTTGCCTC+AGG 0.540942 8.3:-42695581 MS.gene055877:intron
CAATGAGCCTTGTCTCTCCT+AGG 0.544772 8.3:-42695902 MS.gene055877:CDS
CTGCAAAGTTTCCAGGTTTG+GGG 0.545249 8.3:+42695002 None:intergenic
GCCGGGAGGTTAATTCGAAA+AGG 0.547695 8.3:+42695621 None:intergenic
GGAAATTGGCGCAGATATTG+TGG 0.550517 8.3:-42695058 MS.gene055877:CDS
CATTTCTGAACGGAATTGAT+CGG 0.553482 8.3:+42695832 None:intergenic
CAGCCAATGACAATTTCACT+TGG 0.554465 8.3:-42694909 MS.gene055877:CDS
AACAACCACCATTGAGAACA+TGG 0.554605 8.3:-42694295 MS.gene055877:CDS
AAGATTAGCAAATATATGGT+CGG 0.561234 8.3:-42694081 MS.gene055877:CDS
CATTTGCTGAATATATTAGA+CGG 0.563104 8.3:-42694181 MS.gene055877:CDS
TCAGAAACTGTTGTTGACTC+CGG 0.563716 8.3:+42694269 None:intergenic
ACCATTGAGAACATGGCAGC+CGG 0.564288 8.3:-42694288 MS.gene055877:CDS
GACAAGGCTCATTGTTGCGA+CGG 0.573921 8.3:+42695911 None:intergenic
GAATGTCGCGGGATTTGCGG+AGG 0.575959 8.3:+42695781 None:intergenic
GGCTGCCATGTTCTCAATGG+TGG 0.577603 8.3:+42694290 None:intergenic
CTATGTGAATATAGGTCAGG+TGG 0.580589 8.3:+42694234 None:intergenic
TTGCTAATCTTTCAACAGAA+CGG 0.586267 8.3:+42694093 None:intergenic
AGAAGATTTGAGTTGAAACA+TGG 0.586977 8.3:+42694513 None:intergenic
GAAGAAGAATTCGACGACGG+AGG 0.591267 8.3:-42696020 MS.gene055877:CDS
TTACGGTGCCATCGTTATCG+AGG 0.597275 8.3:-42695121 MS.gene055877:CDS
AAATATATGGTCGGGCTCTG+GGG 0.605682 8.3:-42694072 MS.gene055877:CDS
TCCTACTTTAATATAAACGA+AGG 0.607865 8.3:-42694886 MS.gene055877:CDS
GTTGAGTTCCAATGGAAGCA+AGG 0.608223 8.3:+42695667 None:intergenic
GCTGAATATATTAGACGGAA+CGG 0.608350 8.3:-42694176 MS.gene055877:CDS
TTATGAGAACTTGAAGCATG+TGG 0.613522 8.3:+42694469 None:intergenic
TTCCAGAGATTAAGATACCT+AGG 0.613776 8.3:+42695885 None:intergenic
TAATTTAGAACAGGGGCATG+AGG 0.618078 8.3:+42694576 None:intergenic
ATTCAGGATAATTTAGAACA+GGG 0.619965 8.3:+42694568 None:intergenic
TAGGTATCTTAATCTCTGGA+AGG 0.622936 8.3:-42695883 MS.gene055877:CDS
TTCAGGATAATTTAGAACAG+GGG 0.623593 8.3:+42694569 None:intergenic
TATGTGAATATAGGTCAGGT+GGG 0.640734 8.3:+42694235 None:intergenic
TTTAGAACAGGGGCATGAGG+TGG 0.641648 8.3:+42694579 None:intergenic
AATGATGCAACATTTCTGAA+CGG 0.642150 8.3:+42695822 None:intergenic
TAAACTACTTAACCTGTCGA+CGG 0.643627 8.3:+42695983 None:intergenic
TGTGGCATTTCTCAAGCACA+TGG 0.650003 8.3:+42694487 None:intergenic
TCTCATAATTAAGAGCAACA+AGG 0.667425 8.3:-42694454 MS.gene055877:intron
AAGTCAATTCTGTTGAAACG+TGG 0.669978 8.3:-42695692 MS.gene055877:CDS
TGGCAACTTTCACAGTATGG+CGG 0.688505 8.3:-42694842 MS.gene055877:CDS
TAAGATACCTAGGAGAGACA+AGG 0.699149 8.3:+42695895 None:intergenic
GAAGAAGAAGAATTCGACGA+CGG 0.706198 8.3:-42696023 MS.gene055877:CDS
AGGTTTCACCTCGATAACGA+TGG 0.724810 8.3:+42695113 None:intergenic
TGAGAAAGAAGGAAGCCGGG+AGG 0.751446 8.3:+42695607 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTGTTACAATT+TGG + chr8.3:42694857-42694876 None:intergenic 10.0%
!! ATCAACAATATTATAAGTAA+TGG + chr8.3:42694689-42694708 None:intergenic 15.0%
!! ATTACTTATAATATTGTTGA+TGG - chr8.3:42694688-42694707 MS.gene055877:intron 15.0%
!! GGAATATTTATTGTAAAATT+AGG - chr8.3:42694709-42694728 MS.gene055877:intron 15.0%
!!! TGTTTTTTTTGATATTTCAA+TGG - chr8.3:42695955-42695974 MS.gene055877:CDS 15.0%
!! AAAAAAAAAAAAAAGACTGC+AGG - chr8.3:42694869-42694888 MS.gene055877:CDS 20.0%
!! AGTTTAATTCAAACAATCTT+TGG - chr8.3:42695673-42695692 MS.gene055877:CDS 20.0%
!! GTGGATAGAAAATAAATTAT+AGG + chr8.3:42694905-42694924 None:intergenic 20.0%
!! GTTTGAATTAAACTTGAAAA+CGG + chr8.3:42695667-42695686 None:intergenic 20.0%
!! TGTGATGATAGAATTAAAAT+AGG + chr8.3:42694540-42694559 None:intergenic 20.0%
!! TTGAAAGATTAGCAAATATA+TGG - chr8.3:42696002-42696021 MS.gene055877:CDS 20.0%
!! TTTATATTAGCTGTTGTATT+GGG - chr8.3:42694641-42694660 MS.gene055877:intron 20.0%
!!! ATACCATTACTCATTTTTTT+CGG + chr8.3:42694812-42694831 None:intergenic 20.0%
!!! TATGTTTTGTATGTTTAGTT+TGG - chr8.3:42695442-42695461 MS.gene055877:intron 20.0%
! AAATCCTTCTATGTGAATAT+AGG + chr8.3:42695864-42695883 None:intergenic 25.0%
! AAGATTAGCAAATATATGGT+CGG - chr8.3:42696006-42696025 MS.gene055877:CDS 25.0%
! CAGATAAGTTAAAAAGTAAG+TGG + chr8.3:42694924-42694943 None:intergenic 25.0%
! GTTTATATTAGCTGTTGTAT+TGG - chr8.3:42694640-42694659 MS.gene055877:intron 25.0%
! TCCTACTTTAATATAAACGA+AGG - chr8.3:42695201-42695220 MS.gene055877:intron 25.0%
! TCCTTCGTTTATATTAAAGT+AGG + chr8.3:42695205-42695224 None:intergenic 25.0%
!! AATTCAGGATAATTTAGAAC+AGG + chr8.3:42695523-42695542 None:intergenic 25.0%
!! ATTCAGGATAATTTAGAACA+GGG + chr8.3:42695522-42695541 None:intergenic 25.0%
!! CATTTGCTGAATATATTAGA+CGG - chr8.3:42695906-42695925 MS.gene055877:CDS 25.0%
!!! TAAGCACATTTTAACAAAGT+TGG - chr8.3:42694786-42694805 MS.gene055877:intron 25.0%
AAACGAAGGATCTATCAATT+TGG - chr8.3:42695215-42695234 MS.gene055877:intron 30.0%
AACGAAGGATCTATCAATTT+GGG - chr8.3:42695216-42695235 MS.gene055877:intron 30.0%
AATAGTGAGTTACATCTCAA+AGG - chr8.3:42695342-42695361 MS.gene055877:intron 30.0%
AATGATGCAACATTTCTGAA+CGG + chr8.3:42694268-42694287 None:intergenic 30.0%
ACTGATCATGAAAAGACATT+TGG + chr8.3:42696045-42696064 None:intergenic 30.0%
AGATTAGCAAATATATGGTC+GGG - chr8.3:42696007-42696026 MS.gene055877:CDS 30.0%
ATGTTTCAACTCAAATCTTC+TGG - chr8.3:42695576-42695595 MS.gene055877:intron 30.0%
ATTCACATAGAAGGATTTCA+AGG - chr8.3:42695866-42695885 MS.gene055877:CDS 30.0%
CGACAAATTTACTTTCAACT+GGG + chr8.3:42695293-42695312 None:intergenic 30.0%
CTTATGAATGACATCAAACA+TGG + chr8.3:42694770-42694789 None:intergenic 30.0%
GAAATAGTTTACTTTCTCTC+TGG - chr8.3:42695060-42695079 MS.gene055877:CDS 30.0%
TATCACCTTCTTCATATTTG+AGG + chr8.3:42695368-42695387 None:intergenic 30.0%
TCGACAAATTTACTTTCAAC+TGG + chr8.3:42695294-42695313 None:intergenic 30.0%
TCTCATAATTAAGAGCAACA+AGG - chr8.3:42695633-42695652 MS.gene055877:CDS 30.0%
TGATGTAAATCACGAAATTC+AGG + chr8.3:42695538-42695557 None:intergenic 30.0%
TTGCTAATCTTTCAACAGAA+CGG + chr8.3:42695997-42696016 None:intergenic 30.0%
! ATGAAAATTTTGAATGTCGC+GGG + chr8.3:42694320-42694339 None:intergenic 30.0%
! ATTAGTAGCATTGAGAAAGA+AGG + chr8.3:42694494-42694513 None:intergenic 30.0%
! GATGAAAATTTTGAATGTCG+CGG + chr8.3:42694321-42694340 None:intergenic 30.0%
! GTAACTCACTATTGTCATTT+CGG + chr8.3:42695335-42695354 None:intergenic 30.0%
! TCTATCAATTTGGGTATTGT+TGG - chr8.3:42695225-42695244 MS.gene055877:intron 30.0%
! TTCAGGATAATTTAGAACAG+GGG + chr8.3:42695521-42695540 None:intergenic 30.0%
!! AGAAGATTTGAGTTGAAACA+TGG + chr8.3:42695577-42695596 None:intergenic 30.0%
!! AGAATTGACTTGAGATAGAA+AGG + chr8.3:42694386-42694405 None:intergenic 30.0%
AAAATAGGTTAACGTACCTG+AGG + chr8.3:42694525-42694544 None:intergenic 35.0%
AAAGGCCTCAAATATGAAGA+AGG - chr8.3:42695360-42695379 MS.gene055877:intron 35.0%
AAGTCAATTCTGTTGAAACG+TGG - chr8.3:42694395-42694414 MS.gene055877:intron 35.0%
ACTTTGGTCACAAAGTCTTT+AGG + chr8.3:42695129-42695148 None:intergenic 35.0%
ATATGACATATTAGCGAGTC+CGG + chr8.3:42694130-42694149 None:intergenic 35.0%
CAAAGTTGGAACGAAAACTT+TGG + chr8.3:42695145-42695164 None:intergenic 35.0%
CATTTCTGAACGGAATTGAT+CGG + chr8.3:42694258-42694277 None:intergenic 35.0%
CTGACCTATATTCACATAGA+AGG - chr8.3:42695857-42695876 MS.gene055877:CDS 35.0%
CTTCTATGTGAATATAGGTC+AGG + chr8.3:42695859-42695878 None:intergenic 35.0%
CTTTGGTCACAAAGTCTTTA+GGG + chr8.3:42695128-42695147 None:intergenic 35.0%
GATGGAAAATGAACAGAAGA+AGG + chr8.3:42694997-42695016 None:intergenic 35.0%
GCTGAATATATTAGACGGAA+CGG - chr8.3:42695911-42695930 MS.gene055877:CDS 35.0%
TAAACTACTTAACCTGTCGA+CGG + chr8.3:42694107-42694126 None:intergenic 35.0%
TAGGTATCTTAATCTCTGGA+AGG - chr8.3:42694204-42694223 MS.gene055877:CDS 35.0%
TATGTGAATATAGGTCAGGT+GGG + chr8.3:42695855-42695874 None:intergenic 35.0%
TGAAAACACTGCAGTCTTTA+CGG - chr8.3:42694949-42694968 MS.gene055877:CDS 35.0%
TGGCCGAAAAAAATGAGTAA+TGG - chr8.3:42694806-42694825 MS.gene055877:intron 35.0%
TTATGAGAACTTGAAGCATG+TGG + chr8.3:42695621-42695640 None:intergenic 35.0%
TTCACATCATTCGACATCAA+AGG - chr8.3:42695398-42695417 MS.gene055877:intron 35.0%
TTCCAGAGATTAAGATACCT+AGG + chr8.3:42694205-42694224 None:intergenic 35.0%
TTGTTGAAGTTGAGTTCCAA+TGG + chr8.3:42694431-42694450 None:intergenic 35.0%
! GAAATTGTCATTGGCTGTTT+CGG + chr8.3:42695175-42695194 None:intergenic 35.0%
AACAACCACCATTGAGAACA+TGG - chr8.3:42695792-42695811 MS.gene055877:CDS 40.0%
AGTAAACCTGCAAAGTTTCC+AGG + chr8.3:42695095-42695114 None:intergenic 40.0%
ATTTCCAGCTTCTTCAGTGA+TGG + chr8.3:42695015-42695034 None:intergenic 40.0%
CAGCCAATGACAATTTCACT+TGG - chr8.3:42695178-42695197 MS.gene055877:intron 40.0%
CGACAGGTTAAGTAGTTTAC+CGG - chr8.3:42694108-42694127 MS.gene055877:CDS 40.0%
CTACTAATATCGTTTGCCTC+AGG - chr8.3:42694506-42694525 MS.gene055877:CDS 40.0%
CTATGTGAATATAGGTCAGG+TGG + chr8.3:42695856-42695875 None:intergenic 40.0%
CTCCTAGGTATCTTAATCTC+TGG - chr8.3:42694200-42694219 MS.gene055877:CDS 40.0%
GAAGAAGAAGAATTCGACGA+CGG - chr8.3:42694064-42694083 MS.gene055877:CDS 40.0%
GGACCAAGTGAAATTGTCAT+TGG + chr8.3:42695184-42695203 None:intergenic 40.0%
TAAGATACCTAGGAGAGACA+AGG + chr8.3:42694195-42694214 None:intergenic 40.0%
TCACTGAAGAAGCTGGAAAT+TGG - chr8.3:42695015-42695034 MS.gene055877:CDS 40.0%
TCTTCTTCTTCTGCTTTAGC+TGG + chr8.3:42694055-42694074 None:intergenic 40.0%
TGTTGGCAACTTTCACAGTA+TGG - chr8.3:42695242-42695261 MS.gene055877:intron 40.0%
TTCGGATGAGGTTGAGAATA+GGG + chr8.3:42695317-42695336 None:intergenic 40.0%
TTTCGGATGAGGTTGAGAAT+AGG + chr8.3:42695318-42695337 None:intergenic 40.0%
! CACTATTGTCATTTCGGATG+AGG + chr8.3:42695329-42695348 None:intergenic 40.0%
! TAATCTCTGGAAGGATCTTC+AGG - chr8.3:42694213-42694232 MS.gene055877:CDS 40.0%
! TAATTTAGAACAGGGGCATG+AGG + chr8.3:42695514-42695533 None:intergenic 40.0%
! TCCTTTTCGAATTAACCTCC+CGG - chr8.3:42694465-42694484 MS.gene055877:CDS 40.0%
! TTTTCCATCACTGAAGAAGC+TGG - chr8.3:42695008-42695027 MS.gene055877:CDS 40.0%
!! TCAGAAACTGTTGTTGACTC+CGG + chr8.3:42695821-42695840 None:intergenic 40.0%
!!! TTGCGACGGAAGTTTTAGTT+GGG + chr8.3:42694165-42694184 None:intergenic 40.0%
AAATATATGGTCGGGCTCTG+GGG - chr8.3:42696015-42696034 MS.gene055877:CDS 45.0%
ACCTGCAAAGTTTCCAGGTT+TGG + chr8.3:42695090-42695109 None:intergenic 45.0%
AGGTTTCACCTCGATAACGA+TGG + chr8.3:42694977-42694996 None:intergenic 45.0%
CAAATATATGGTCGGGCTCT+GGG - chr8.3:42696014-42696033 MS.gene055877:CDS 45.0%
CATTGAGAAAGAAGGAAGCC+GGG + chr8.3:42694486-42694505 None:intergenic 45.0%
CCTGCAAAGTTTCCAGGTTT+GGG + chr8.3:42695089-42695108 None:intergenic 45.0%
CTGCAAAGTTTCCAGGTTTG+GGG + chr8.3:42695088-42695107 None:intergenic 45.0%
GCATTGAGAAAGAAGGAAGC+CGG + chr8.3:42694487-42694506 None:intergenic 45.0%
GGAAATTGGCGCAGATATTG+TGG - chr8.3:42695029-42695048 MS.gene055877:CDS 45.0%
GTTGAGTTCCAATGGAAGCA+AGG + chr8.3:42694423-42694442 None:intergenic 45.0%
TGGCAACTTTCACAGTATGG+CGG - chr8.3:42695245-42695264 MS.gene055877:intron 45.0%
TGTGGCATTTCTCAAGCACA+TGG + chr8.3:42695603-42695622 None:intergenic 45.0%
TTGTTATCGTGTACGTGCAG+TGG - chr8.3:42695485-42695504 MS.gene055877:intron 45.0%
TTTGAATGTCGCGGGATTTG+CGG + chr8.3:42694312-42694331 None:intergenic 45.0%
! GACATGATGTCCCTTTTTGC+TGG - chr8.3:42695762-42695781 MS.gene055877:CDS 45.0%
! TGATGTCCCTTTTTGCTGGT+AGG - chr8.3:42695766-42695785 MS.gene055877:CDS 45.0%
!! GTTGCGACGGAAGTTTTAGT+TGG + chr8.3:42694166-42694185 None:intergenic 45.0%
ACCATTGAGAACATGGCAGC+CGG - chr8.3:42695799-42695818 MS.gene055877:CDS 50.0%
ACGTGGATCCTTGCTTCCAT+TGG - chr8.3:42694412-42694431 MS.gene055877:intron 50.0%
CCCAAACCTGGAAACTTTGC+AGG - chr8.3:42695086-42695105 MS.gene055877:CDS 50.0%
GAAGAAGAATTCGACGACGG+AGG - chr8.3:42694067-42694086 MS.gene055877:CDS 50.0%
GACAAGGCTCATTGTTGCGA+CGG + chr8.3:42694179-42694198 None:intergenic 50.0%
GCAAATATATGGTCGGGCTC+TGG - chr8.3:42696013-42696032 MS.gene055877:CDS 50.0%
GCCGGGAGGTTAATTCGAAA+AGG + chr8.3:42694469-42694488 None:intergenic 50.0%
GTTCCGCCTACCAGCAAAAA+GGG + chr8.3:42695775-42695794 None:intergenic 50.0%
GTTTCGGAGCTGGACAAAGT+TGG + chr8.3:42695159-42695178 None:intergenic 50.0%
TGTTCCGCCTACCAGCAAAA+AGG + chr8.3:42695776-42695795 None:intergenic 50.0%
! CAATGAGCCTTGTCTCTCCT+AGG - chr8.3:42694185-42694204 MS.gene055877:CDS 50.0%
! TGTCCCTTTTTGCTGGTAGG+CGG - chr8.3:42695769-42695788 MS.gene055877:CDS 50.0%
! TTTAGAACAGGGGCATGAGG+TGG + chr8.3:42695511-42695530 None:intergenic 50.0%
!! TTACGGTGCCATCGTTATCG+AGG - chr8.3:42694966-42694985 MS.gene055877:CDS 50.0%
!!! CGACGGAAGTTTTAGTTGGG+AGG + chr8.3:42694162-42694181 None:intergenic 50.0%
GGCTGCCATGTTCTCAATGG+TGG + chr8.3:42695800-42695819 None:intergenic 55.0%
TCACTAACTTCGCCGTCGAC+AGG - chr8.3:42694092-42694111 MS.gene055877:CDS 55.0%
TCCGGCTGCCATGTTCTCAA+TGG + chr8.3:42695803-42695822 None:intergenic 55.0%
TGAGAAAGAAGGAAGCCGGG+AGG + chr8.3:42694483-42694502 None:intergenic 55.0%
! GTCATTGGCTGTTTCGGAGC+TGG + chr8.3:42695169-42695188 None:intergenic 55.0%
GAATGTCGCGGGATTTGCGG+AGG + chr8.3:42694309-42694328 None:intergenic 60.0%
! TCTCTCTGGCTCCCCAAACC+TGG - chr8.3:42695074-42695093 MS.gene055877:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 42694037 42696072 42694037 ID=MS.gene055877
chr8.3 mRNA 42694037 42696072 42694037 ID=MS.gene055877.t1;Parent=MS.gene055877
chr8.3 exon 42695582 42696072 42695582 ID=MS.gene055877.t1.exon1;Parent=MS.gene055877.t1
chr8.3 CDS 42695582 42696072 42695582 ID=cds.MS.gene055877.t1;Parent=MS.gene055877.t1
chr8.3 exon 42694828 42695146 42694828 ID=MS.gene055877.t1.exon2;Parent=MS.gene055877.t1
chr8.3 CDS 42694828 42695146 42694828 ID=cds.MS.gene055877.t1;Parent=MS.gene055877.t1
chr8.3 exon 42694455 42694604 42694455 ID=MS.gene055877.t1.exon3;Parent=MS.gene055877.t1
chr8.3 CDS 42694455 42694604 42694455 ID=cds.MS.gene055877.t1;Parent=MS.gene055877.t1
chr8.3 exon 42694037 42694321 42694037 ID=MS.gene055877.t1.exon4;Parent=MS.gene055877.t1
chr8.3 CDS 42694037 42694321 42694037 ID=cds.MS.gene055877.t1;Parent=MS.gene055877.t1
Gene Sequence

>MS.gene055877

ATGGCGGAGATGAAACCAGCTAAAGCAGAAGAAGAAGAATTCGACGACGGAGGAGTCACTAACTTCGCCGTCGACAGGTTAAGTAGTTTACCGGACTCGCTAATATGTCATATAATGTCATTCCTCCCAACTAAAACTTCCGTCGCAACAATGAGCCTTGTCTCTCCTAGGTATCTTAATCTCTGGAAGGATCTTCAGGTCTTCTATTTCAACTTTCACCGATCAATTCCGTTCAGAAATGTTGCATCATTCGTAAACTCTGTTCTCATCCTCCGCAAATCCCGCGACATTCAAAATTTTCATCTCACTTTCAATTGTGATCGATTCAAGCAATTGAATTTTGAAGCCTTTCTATCTCAAGTCAATTCTGTTGAAACGTGGATCCTTGCTTCCATTGGAACTCAACTTCAACAACTCTTTCTCGATGTTCCTTTTCGAATTAACCTCCCGGCTTCCTTCTTTCTCAATGCTACTAATATCGTTTGCCTCAGGTACGTTAACCTATTTTAATTCTATCATCACACACACAGACATACAAGTTATTAGCACTAACGTTAACAAGTTAGTGTTTAAGTTTCTTTTTTTCGTTACAAATTCGAAAGCGTTTATATTAGCTGTTGTATTGGGTTTGATTTGAAACAAAATTGTTCCATTACTTATAATATTGTTGATGGAATATTTATTGTAAAATTAGGTTTGAATTCAAAAACAAGATACTGTGCGTAAATAACCATGTTTGATGTCATTCATAAGCACATTTTAACAAAGTTGGCCGAAAAAAATGAGTAATGGTATAAATATTCTATGATTTAAAAGACCAAATTGTAACAAAAAAAAAAAAAAAAAGACTGCAGGAGACATTTGACCTATAATTTATTTTCTATCCACTTACTTTTTAACTTATCTGACTTTTGAAAACACTGCAGTCTTTACGGTGCCATCGTTATCGAGGTGAAACCTTCTTCTGTTCATTTTCCATCACTGAAGAAGCTGGAAATTGGCGCAGATATTGTGGATGTAAATGAAATAGTTTACTTTCTCTCTGGCTCCCCAAACCTGGAAACTTTGCAGGTTTACTTTTACTTTGTCCCTAAAGACTTTGTGACCAAAGTTTTCGTTCCAACTTTGTCCAGCTCCGAAACAGCCAATGACAATTTCACTTGGTCCTACTTTAATATAAACGAAGGATCTATCAATTTGGGTATTGTTGGCAACTTTCACAGTATGGCGGAAGCGTTTCTTGATGTATTTTACCCAGTTGAAAGTAAATTTGTCGACCCTATTCTCAACCTCATCCGAAATGACAATAGTGAGTTACATCTCAAAGGCCTCAAATATGAAGAAGGTGATATATATCTACTTTCACATCATTCGACATCAAAGGTGAGTTTTATTTTTATAGTTATATGTTTTGTATGTTTAGTTTGGTACTAATATTGCATCATCACTTGTTATCGTGTACGTGCAGTGGCCACCTCATGCCCCTGTTCTAAATTATCCTGAATTTCGTGATTTACATCATCTAAAGTTCGTTCTTCCATGTTTCAACTCAAATCTTCTGGTCCATGTGCTTGAGAAATGCCACATGCTTCAAGTTCTCATAATTAAGAGCAACAAGGTTTGTTGACCGTTTTCAAGTTTAATTCAAACAATCTTTGGTCTATTTATATATACATGCATGCATGTCTCTCTATATCTGTACACACAAATATGTTTTTGAGTCATGACATGATGTCCCTTTTTGCTGGTAGGCGGAACAACCACCATTGAGAACATGGCAGCCGGAGTCAACAACAGTTTCTGAATGTCTCAAATCCCACCTGACCTATATTCACATAGAAGGATTTCAAGGACATGAAGATGAGCTGACATTTGCTGAATATATTAGACGGAACGGACTTGTTTTGAAGACAATGCTTGTTTTTTTTGATATTTCAATGGATAAAACGAACAAGTACCGTTCTGTTGAAAGATTAGCAAATATATGGTCGGGCTCTGGGGCATGCCAAATGTCTTTTCATGATCAGTCTTACTGA

Protein sequence

>MS.gene055877.t1

MAEMKPAKAEEEEFDDGGVTNFAVDRLSSLPDSLICHIMSFLPTKTSVATMSLVSPRYLNLWKDLQVFYFNFHRSIPFRNVASFVNSVLILRKSRDIQNFHLTFNCDRFKQLNFEAFLSQVNSVETWILASIGTQLQQLFLDVPFRINLPASFFLNATNIVCLSLYGAIVIEVKPSSVHFPSLKKLEIGADIVDVNEIVYFLSGSPNLETLQVYFYFVPKDFVTKVFVPTLSSSETANDNFTWSYFNINEGSINLGIVGNFHSMAEAFLDWPPHAPVLNYPEFRDLHHLKFVLPCFNSNLLVHVLEKCHMLQVLIIKSNKAEQPPLRTWQPESTTVSECLKSHLTYIHIEGFQGHEDELTFAEYIRRNGLVLKTMLVFFDISMDKTNKYRSVERLANIWSGSGACQMSFHDQSY