AlfalfaGEDB | MS.gene63105

M. sativa cultivar XinJiangDaYe / MS.gene63105

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF08387.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63105.t1	RHN60394.1	57.7	477	168	10	5	451	7	479	2.70E-134	488.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63105.t1	Q9FZ52	25.2	465	293	15	13	446	9	449	3.1e-22	107.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63105.t1	A0A392M1I8	60.8	454	150	7	19	451	18	464	6.3e-141	510.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002112	MS.gene63105	PPI
MS.gene003455	MS.gene63105	PPI
MS.gene003456	MS.gene63105	PPI
MS.gene004045	MS.gene63105	PPI
MS.gene005794	MS.gene63105	PPI
MS.gene005795	MS.gene63105	PPI
MS.gene006692	MS.gene63105	PPI
MS.gene006723	MS.gene63105	PPI
MS.gene006725	MS.gene63105	PPI
MS.gene006727	MS.gene63105	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63105.t1	MTR_8g469020	55.385	455	178	6	18	451	6	456	6.03e-161	462
MS.gene63105.t1	MTR_8g058965	55.870	460	179	7	12	450	4	460	2.45e-160	461
MS.gene63105.t1	MTR_8g070950	55.076	463	172	12	1	451	1	439	2.43e-147	427
MS.gene63105.t1	MTR_8g062010	53.097	452	178	8	13	450	3	434	2.38e-144	419
MS.gene63105.t1	MTR_8g062310	53.392	457	179	11	1	451	5	433	8.28e-142	413
MS.gene63105.t1	MTR_8g062080	51.613	465	186	13	4	450	6	449	9.93e-140	408
MS.gene63105.t1	MTR_4g050250	53.828	418	159	10	5	392	7	420	1.82e-136	399
MS.gene63105.t1	MTR_8g062300	47.835	485	187	16	11	450	18	481	8.58e-123	366
MS.gene63105.t1	MTR_2g083840	43.982	457	231	12	6	446	10	457	3.07e-94	292
MS.gene63105.t1	MTR_8g468810	40.625	480	234	16	1	446	1	463	4.03e-94	292

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63105.t1	AT4G26340	28.251	446	274	15	19	446	2	419	5.41e-25	107
MS.gene63105.t1	AT1G16930	25.641	468	287	16	13	446	9	449	1.94e-22	99.8
MS.gene63105.t1	AT1G16930	25.641	468	287	16	13	446	9	449	1.94e-22	99.8
MS.gene63105.t1	AT1G16930	25.641	468	287	16	13	446	9	449	1.94e-22	99.8
MS.gene63105.t1	AT5G56420	27.009	448	276	15	19	446	6	422	2.38e-22	99.4
MS.gene63105.t1	AT5G56420	27.009	448	276	15	19	446	6	422	2.38e-22	99.4
MS.gene63105.t1	AT5G56420	27.009	448	276	15	19	446	6	422	2.38e-22	99.4
MS.gene63105.t1	AT3G58920	26.694	487	278	16	19	446	2	468	3.12e-21	96.3
MS.gene63105.t1	AT4G10400	27.088	443	271	13	19	445	2	408	1.02e-20	94.4
MS.gene63105.t1	AT4G10400	27.088	443	271	13	19	445	2	408	1.02e-20	94.4

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Find 126 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACATTAGGCATCAT+TGG	0.457220	8.1:+43082542	MS.gene63105:CDS
AAACCTGACGATGCTTCCAG+AGG	0.676435	8.1:-43080461	None:intergenic
AACAAGACTCGTTGCCACGG+CGG	0.733032	8.1:-43080421	None:intergenic
AACGGGGCAGCCAGAGAGAA+AGG	0.437002	8.1:-43082357	None:intergenic
AAGAAGGGAGGATCGGATTT+GGG	0.245303	8.1:-43080716	None:intergenic
AAGAAGTTGAAATTCAACAA+TGG	0.632882	8.1:+43082446	MS.gene63105:CDS
AAGAGGGAAGAAGGGAGGAT+CGG	0.598884	8.1:-43080723	None:intergenic
AAGCTTACCTGAGTGAAACG+AGG	0.726687	8.1:-43080758	None:intergenic
AAGGTTAACCCATGTACCAA+AGG	0.587456	8.1:+43083270	MS.gene63105:CDS
AATATGCAGAGTTTCGAGAA+CGG	0.614772	8.1:-43082375	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAACCACTTTCAAAG+GGG	-	chr8.1:43081153-43081172	None:intergenic	30.0%
ACAATGTAAGAAGAGATGTT+TGG	-	chr8.1:43081280-43081299	None:intergenic	30.0%
AGAAGATTCAAATTGAAGCA+GGG	-	chr8.1:43082867-43082886	None:intergenic	30.0%
ATATGTGAACGAATTATTGC+CGG	+	chr8.1:43081506-43081525	MS.gene63105:intron	30.0%
GAAAAAGAAACCACTTTCAA+AGG	-	chr8.1:43081155-43081174	None:intergenic	30.0%
GAATGAACTTTAGATGAAGT+AGG	-	chr8.1:43082842-43082861	None:intergenic	30.0%
TAACTAGATGTAATCTTGCT+AGG	+	chr8.1:43081189-43081208	MS.gene63105:intron	30.0%
TCAACAATGGAAATTTCTCA+TGG	+	chr8.1:43082459-43082478	MS.gene63105:CDS	30.0%
AAAAAGAAGTGAATACACCC+AGG	-	chr8.1:43081671-43081690	None:intergenic	35.0%
AAAACCACATTAGGCATCAT+TGG	+	chr8.1:43082542-43082561	MS.gene63105:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	43080303	43083339	43080303	ID=MS.gene63105
chr8.1	mRNA	43080303	43083339	43080303	ID=MS.gene63105.t1;Parent=MS.gene63105
chr8.1	exon	43080303	43080772	43080303	ID=MS.gene63105.t1.exon1;Parent=MS.gene63105.t1
chr8.1	CDS	43080303	43080772	43080303	ID=cds.MS.gene63105.t1;Parent=MS.gene63105.t1
chr8.1	exon	43081762	43081819	43081762	ID=MS.gene63105.t1.exon2;Parent=MS.gene63105.t1
chr8.1	CDS	43081762	43081819	43081762	ID=cds.MS.gene63105.t1;Parent=MS.gene63105.t1
chr8.1	exon	43082317	43082706	43082317	ID=MS.gene63105.t1.exon3;Parent=MS.gene63105.t1
chr8.1	CDS	43082317	43082706	43082317	ID=cds.MS.gene63105.t1;Parent=MS.gene63105.t1
chr8.1	exon	43082795	43082944	43082795	ID=MS.gene63105.t1.exon4;Parent=MS.gene63105.t1
chr8.1	CDS	43082795	43082944	43082795	ID=cds.MS.gene63105.t1;Parent=MS.gene63105.t1
chr8.1	exon	43083052	43083339	43083052	ID=MS.gene63105.t1.exon5;Parent=MS.gene63105.t1
chr8.1	CDS	43083052	43083339	43083052	ID=cds.MS.gene63105.t1;Parent=MS.gene63105.t1

Gene Sequence

>MS.gene63105

ATGGCGGAGATAGCGAAACGACGGAAACCAGGCGATGAAAAAAACAATGGCACCGACATGATGAGTAATTTACCGGAATCTGTAGTTTGCCACATCCTATCATTCCTCTCCATTAAAACCGCCGTGGCAACGAGTCTTGTTTCTCGCAGATGGCGCAACCTCTGGAAGCATCGTCAGGTTTTCCAATTCGACGACGACTACTCGTACGATTACGAAAGGTTCAAAAAATTTGCATTTTTCGTCAACGCTGTGCTCTCCCTCCGTACATCCCGTGACATTCGAAAGTTCCGTCTCCATTGTGGCATAATGTATGAACACAAGTTTCCCAGCAACTGCATCAACACGTGGATCTCTGCCGCCATTGGGCCCCACCTTCAAGAACTGGATCTCCACATCGCCAACCCCTATGATACCCCAAATCCGATCCTCCCTTCTTCCCTCTTGAATTGCACCAACCTCGTTTCACTCAGGTAAGCTTTTCAGTTACAAAACAACATTTCTGTACTGTTTATGCATGTTTGGTTGTCGGTGAAGAAAATTGATTTTGATAGAATTTATTATGTAGAATTGATTTTGGTTTAAAACAATTCTGACTAAAAGTGGTCTGTGTTTGAATATATTCATGAAAAAGTGAGTTAAATTTTAAATATGTGTTAGAGAAGCTACAAATTCTAGTTAAGTAGAATCAATTCTTATATGGGGGAATATTCCGGATTGTTGGGGTTGGAAACCGGAAGAGGGTGGTACTTTCTCTGTGAAATCTTGCTATTTGAAGTTGGTGAGTTTGATGTTGGAGGATGAGATGTGGAAGAAAAGGGAGTTTTTGAGACTATTTGGAAAAGTAAAGCCCCTTTGAAAGTGGTTTCTTTTTCTTGGAAACTTTTTCTAACTAGATGTAATCTTGCTAGGAGAAATTGTTTACCCCCCAGATGAGTCTACCTTGTGTGTTTTGTGTGGTAGAACGGAAGAATCGTCCAAACATCTCTTCTTACATTGTAATTTCACGGCAAAGGGTTGGGAAAGTGTTATGAAATGGCTTGATTTCTCTTTCATTACTCCCCCGAATTTGTTTGTGCATTGGGCTTGTTGGAGTAATGAAGGGAGAAACAAGAGGATTCGTAAGGCGTTGTCGATTATTTGACATGCTATCATTTGGGTGATTTGGCAAGCGAGGAATCACATTATTTTCCAGAATGAGGTGAAATATGTGAACGAATTATTGCCGGAAATAATGGTGATGTTGTGGCGGTGGAGTTTGAGTAGACTTTCTATGCAAACTTGTTTATACTATGAGTGGAGTTGGAATCCTCAAGAGTGCTTGTTGCGGTAAAGGTTTTTGTTTGGCTAGAGGCTGTTTGGGTGAAGCCTGGGTGTATTCACTTCTTTTTCGTGGCTGTTTTTTACTATAATGGGGTATTGATTTTTATATTGGAGTGTTTGGTGGTTGTTTGTTTTTTAGAGCTGGTGTTGAGGCGTGGGTATGCCAGGATGGGATTGGTAGTGAGCTTAGTGCCTTGGTACTTTGATTTAGTGTTTCTTTCCTTTTTGTGCTCTGGGGCATTTGTATTTTCCTTTTCTTTGCCGCGAGTGGTAATGTTTTCAGTACTACATGACGTGAATAATATTAGCCGATTAAAAAAAAAATTCTACTCGACAACAACCAAACATGTCAGAATCAATTGTACCGGAATCAATTTTGGTCCCTCTAGAAGTGGAACCAAACATACACGTAGTATGTACTGTATATTTAGTATATTTTAGAACAAAAAAAAAGTTTCTTTAGCTAACTAATTTTTTTTTATAGAATGAAATGAAAACAGAAGCGTATAATTTTTCCTTAATTTAACTTTGTTCCTATGAAAATGGCAAGATCATAGATCAATAATATCCAAAAATAGTATTTAAGAATTTGTAGATAATGCTAACTTTCATGATTTCATCTAAATGCTCCAGTCTTGTCGGTGAAATCAAAATGAAAGTTCAACATTCTTCAGTTCATTTTCCATCACTCAAGTGGCTGAAACTCGACATATGTGTTATGGATTCAGACATTGCCTTTCTCTCTGGCTGCCCCGTTCTCGAAACTCTGCATATTTACTTTAACCCCAGACTTCTGACCAAAGTTCCCGTGACACCTTCCTCCAAGAAGTTGAAATTCAACAATGGAAATTTCTCATGGACTTGTCTTCAAATAGATTCCAATGATTGGCTTGATGATGTGTACAGTTGGGGATCAGCCAAAACCACATTAGGCATCATTGGCAACGTGCATAGTGTTGTCGAAGCATATCTTGATGTCTTTCTCCAACGTGAGAGTGAATTTGTCGACCCTATTCTCAACCGCTTCCGCTACCAAGGTCCCGGTAATGAATTATATCTACAGCTGTGTCATTCAACAGAAAAGGTGAAGTTTTATTAATATGATTTATATGTATTTGTATAAATATTTTTGTATTAATATTGTGCCATCACTTGTTATCACGTACAAGCAGTGGCCGCTTCGTGCCCCTGTTATAAATAATCCAGAATTTTGCAACCTACTTCATCTAAAGTTCATTCTTCCCTGCTTCAATTTGAATCTTCTGGTCAACATTCTTGAGAAATGTCACATGCTTCAAGTTCTCATACTTCAAATCGACAAGGTTTGTTGACTTATCAAGTTTCATTCAATGGATTTTTGGTCTGTCTATTTAGATATTACTATAGTTAGTCTATACATGCGAGTCATGGTGTGCCTTGTTGTCGATAGGAAGAACCATCACCTGTAGGAGCATGTGAGCTGCAGTCAACAACAGTTCCTAAATGTCTTGAATCCCACCTCACCTACATTCACATAGAAGGATACCAAGGATTTGAAGAAGAGCTGACATTTGCTGAATATATTTTGTTGAACGGACTTGTTTTGAAGACAATGCTTATTTTTGTTGATATTTCAATGGACATAACGAACAAGTACCGTTCTCTCAAAAGGTTAACCCATGTACCAAAGGGCTCTGTCACTTGCCAGCTTGAATTTGATGCAGATGTGTCTCCTTAA

Protein sequence

>MS.gene63105.t1

MAEIAKRRKPGDEKNNGTDMMSNLPESVVCHILSFLSIKTAVATSLVSRRWRNLWKHRQVFQFDDDYSYDYERFKKFAFFVNAVLSLRTSRDIRKFRLHCGIMYEHKFPSNCINTWISAAIGPHLQELDLHIANPYDTPNPILPSSLLNCTNLVSLRAGVEAWVCQDGIGSELSALWLKLDICVMDSDIAFLSGCPVLETLHIYFNPRLLTKVPVTPSSKKLKFNNGNFSWTCLQIDSNDWLDDVYSWGSAKTTLGIIGNVHSVVEAYLDVFLQRESEFVDPILNRFRYQGPGNELYLQLCHSTEKWPLRAPVINNPEFCNLLHLKFILPCFNLNLLVNILEKCHMLQVLILQIDKEEPSPVGACELQSTTVPKCLESHLTYIHIEGYQGFEEELTFAEYILLNGLVLKTMLIFVDISMDITNKYRSLKRLTHVPKGSVTCQLEFDADVSP