AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055882

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055882.t1 MTR_8g070950 65.012 423 121 11 1 408 29 439 2.82e-175 496
MS.gene055882.t1 MTR_8g062010 58.513 417 158 8 1 407 23 434 8.50e-144 416
MS.gene055882.t1 MTR_8g062310 56.204 411 161 11 1 408 39 433 3.91e-141 409
MS.gene055882.t1 MTR_8g469020 53.139 446 161 14 1 408 21 456 1.00e-137 402
MS.gene055882.t1 MTR_8g062080 55.269 427 157 15 1 407 37 449 6.51e-137 399
MS.gene055882.t1 MTR_8g062300 53.915 447 161 11 1 407 40 481 1.67e-136 399
MS.gene055882.t1 MTR_8g058965 53.708 445 157 13 1 407 27 460 1.47e-130 384
MS.gene055882.t1 MTR_8g467790 54.593 381 111 13 1 357 162 504 2.80e-114 343
MS.gene055882.t1 MTR_4g050250 49.622 397 141 15 1 349 35 420 3.13e-102 310
MS.gene055882.t1 MTR_2g086020 74.658 146 36 1 264 408 175 320 2.12e-68 219
MS.gene055882.t1 MTR_2g086020 46.763 139 64 5 15 145 1 137 6.54e-24 101
MS.gene055882.t1 MTR_2g083840 39.723 433 221 15 1 403 35 457 2.00e-67 221
MS.gene055882.t1 MTR_8g014260 38.642 427 215 16 8 400 35 448 3.81e-62 207
MS.gene055882.t1 MTR_8g062270 37.071 437 225 14 1 401 30 452 9.69e-62 206
MS.gene055882.t1 MTR_8g468810 39.367 442 212 22 1 403 39 463 1.20e-61 206
MS.gene055882.t1 MTR_5g092960 36.795 443 221 18 1 400 33 459 3.03e-59 200
MS.gene055882.t1 MTR_8g467800 37.900 438 229 17 1 408 34 458 3.19e-58 197
MS.gene055882.t1 MTR_8g058970 36.184 456 221 21 1 400 33 474 1.41e-55 190
MS.gene055882.t1 MTR_8g468840 36.446 439 227 19 1 403 28 450 1.33e-54 187
MS.gene055882.t1 MTR_4g032730 35.135 444 232 15 7 403 33 467 3.82e-54 186
MS.gene055882.t1 MTR_8g468760 36.156 437 201 16 1 401 23 417 1.19e-51 179
MS.gene055882.t1 MTR_8g445780 37.867 375 193 17 7 356 31 390 3.66e-50 174
MS.gene055882.t1 MTR_8g468810 38.968 349 162 19 1 314 39 371 5.28e-41 149
MS.gene055882.t1 MTR_5g092960 36.364 352 173 14 1 314 33 371 8.95e-40 146
MS.gene055882.t1 MTR_8g014160 31.765 425 208 17 1 400 55 422 4.60e-39 145
MS.gene055882.t1 MTR_4g024710 36.770 291 161 11 125 400 62 344 1.23e-35 134
MS.gene055882.t1 MTR_8g468810 41.176 272 117 16 1 244 39 295 1.67e-34 130
MS.gene055882.t1 MTR_8g468810 41.176 272 117 16 1 244 39 295 2.13e-34 130
MS.gene055882.t1 MTR_8g468810 41.176 272 117 16 1 244 39 295 3.50e-34 130
MS.gene055882.t1 MTR_8g077460 46.429 140 72 3 262 400 235 372 6.56e-31 122
MS.gene055882.t1 MTR_8g077460 34.826 201 103 11 7 187 28 220 6.00e-12 67.0
MS.gene055882.t1 MTR_8g014210 36.555 238 131 10 179 403 1 231 7.46e-28 110
MS.gene055882.t1 MTR_8g467800 38.148 270 135 14 1 248 34 293 5.73e-27 110
MS.gene055882.t1 MTR_4g024745 35.036 274 155 11 123 381 14 279 4.46e-26 106
MS.gene055882.t1 MTR_3g099800 59.770 87 33 2 316 400 19 105 1.23e-25 100
MS.gene055882.t1 MTR_5g084070 25.917 409 273 12 1 395 27 419 3.87e-19 89.4
MS.gene055882.t1 MTR_5g080710 25.891 421 265 14 1 395 47 446 2.80e-17 84.0
MS.gene055882.t1 MTR_5g021550 46.269 134 53 9 1 119 33 162 3.75e-17 79.0
MS.gene055882.t1 MTR_8g014290 39.007 141 61 7 1 120 24 160 1.63e-14 71.2
MS.gene055882.t1 MTR_8g014230 43.590 78 43 1 314 391 17 93 2.27e-14 69.3
MS.gene055882.t1 MTR_7g098510 25.180 417 231 17 3 400 34 388 1.69e-13 72.0
MS.gene055882.t1 MTR_1g041245 40.171 117 59 3 294 403 274 386 6.31e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055882.t1 AT5G50270 27.670 412 245 15 7 388 20 408 3.48e-19 89.4
MS.gene055882.t1 AT5G56560 26.536 407 252 17 17 400 33 415 1.47e-16 81.6
MS.gene055882.t1 AT2G26030 27.664 441 248 22 7 400 22 438 7.03e-15 76.6
MS.gene055882.t1 AT2G26030 27.664 441 248 22 7 400 22 438 7.03e-15 76.6
MS.gene055882.t1 AT5G56560 27.551 294 180 10 125 400 326 604 3.17e-13 71.6
MS.gene055882.t1 AT5G50270 26.641 259 159 9 7 243 20 269 3.32e-12 67.4
MS.gene055882.t1 AT1G78750 25.806 434 268 20 7 400 36 455 5.83e-12 67.4
MS.gene055882.t1 AT1G78750 25.806 434 268 20 7 400 36 455 5.83e-12 67.4

Find 96 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGGAAACTTTAATAATA+TGG 0.213057 8.3:-42623745 MS.gene055882:CDS
CACTTTCTGCCCCTGTTCTA+AGG 0.248751 8.3:-42623293 MS.gene055882:CDS
TTTGCGGAACGGGCTTGTTT+TGG 0.301181 8.3:-42622898 MS.gene055882:CDS
AGCACAGTGTTGACGAATAA+TGG 0.325293 8.3:+42624643 None:intergenic
CAGTTGATGAAGAGGGTAGA+AGG 0.327420 8.3:+42624466 None:intergenic
GGGAAAACATGTTTAAGTTA+TGG 0.346779 8.3:-42624555 MS.gene055882:CDS
CTCGTAGGTGGCGCCACCTC+TGG 0.349675 8.3:-42624726 MS.gene055882:CDS
CGTGTCACATTGGGCATCAT+TGG 0.351168 8.3:-42623762 MS.gene055882:CDS
ATTGGTAGATTTCAATCTCT+TGG 0.357522 8.3:+42623827 None:intergenic
ATGTTTCAACTCAAATCTTC+TGG 0.358687 8.3:-42623226 MS.gene055882:CDS
TTCGAATGTTGCGGAATTTG+CGG 0.384929 8.3:+42624614 None:intergenic
AACTCTGGATACCTTAGAAC+AGG 0.387304 8.3:+42623282 None:intergenic
CTCGGATGTCTTTGAGAATA+GGG 0.388547 8.3:+42623673 None:intergenic
TTATGGATCCGTACTGCTAC+TGG 0.402373 8.3:-42624538 MS.gene055882:CDS
TCTCGGATGTCTTTGAGAAT+AGG 0.404973 8.3:+42623672 None:intergenic
TCTCTCCGTCTGCCCCGTGC+TGG 0.428073 8.3:-42623925 MS.gene055882:CDS
GAGCTGGAGGAAGGTGGAAC+AGG 0.435822 8.3:+42623849 None:intergenic
CGATCTAATTTGCGAAACTC+TGG 0.442892 8.3:+42623267 None:intergenic
ACGGAGAGAAAGGAAACTAT+TGG 0.444858 8.3:+42623939 None:intergenic
AACTCTGCTATAACTCCTTA+AGG 0.444957 8.3:-42622765 None:intergenic
ATAGATCCCCGTGTCACATT+GGG 0.455209 8.3:-42623771 MS.gene055882:CDS
CACGGGGCAGACGGAGAGAA+AGG 0.456042 8.3:+42623929 None:intergenic
AAAGTAGAGAAATATCATAT+TGG 0.462773 8.3:+42623646 None:intergenic
CTACCAATCACAATTTCACT+TGG 0.468189 8.3:-42623812 MS.gene055882:CDS
TAGCAGAGTTAAGTTTAAGT+TGG 0.469875 8.3:+42622778 None:intergenic
CTGCCCCGTGCTGGAAACAC+TGG 0.475059 8.3:-42623916 MS.gene055882:CDS
AGATTTCAATCTCTTGGAGC+TGG 0.476427 8.3:+42623833 None:intergenic
ACAGAGGTAATGGTCGGACT+CGG 0.477050 8.3:+42624769 None:intergenic
AGTTGATGAAGAGGGTAGAA+GGG 0.486405 8.3:+42624467 None:intergenic
CTTCGTCCTCATCGATAAAG+TGG 0.487580 8.3:+42624686 None:intergenic
AGTCCAAGTGAAATTGTGAT+TGG 0.501196 8.3:+42623809 None:intergenic
CAATCCAGTGTTTCCAGCAC+GGG 0.503073 8.3:+42623912 None:intergenic
GAGATAGAGTTCTTCAAGGT+GGG 0.506876 8.3:+42624513 None:intergenic
CATAGTCCTCACAGAGGTAA+TGG 0.510118 8.3:+42624759 None:intergenic
TCCGGCTGCCATGTTCTCAA+TGG 0.513864 8.3:+42623017 None:intergenic
ATTCACATACAAGGATATCA+AGG 0.520427 8.3:-42622954 MS.gene055882:CDS
CTTGTAGCTGCTGCCAGAGG+TGG 0.531131 8.3:+42624713 None:intergenic
AATCTCTTGGAGCTGGAGGA+AGG 0.531230 8.3:+42623840 None:intergenic
AATGGTCGGACTCGGGAGGA+AGG 0.534339 8.3:+42624777 None:intergenic
TGTTTCCAGCACGGGGCAGA+CGG 0.535232 8.3:+42623920 None:intergenic
TATAGATCCCCGTGTCACAT+TGG 0.538369 8.3:-42623772 MS.gene055882:CDS
AAATATCATATTGGTCATCT+CGG 0.543175 8.3:+42623655 None:intergenic
CTTGTATGTGAATATATGTC+AGG 0.544637 8.3:+42622964 None:intergenic
TGGAGAGATAGAGTTCTTCA+AGG 0.545549 8.3:+42624509 None:intergenic
AATGATGCCCAATGTGACAC+GGG 0.545808 8.3:+42623764 None:intergenic
CTTAGAACAGGGGCAGAAAG+TGG 0.548297 8.3:+42623294 None:intergenic
TTCGCGTCATTTGACATCAA+AGG 0.548380 8.3:-42623625 MS.gene055882:intron
AGATACAGCTTCTTCAGTGA+TGG 0.555293 8.3:+42623984 None:intergenic
AGATTATCTGAGATACCAAT+GGG 0.556738 8.3:-42622813 MS.gene055882:CDS
CTGACATATATTCACATACA+AGG 0.557008 8.3:-42622963 MS.gene055882:CDS
AAGATTATCTGAGATACCAA+TGG 0.557854 8.3:-42622814 MS.gene055882:CDS
AACCACCACCATTGAGAACA+TGG 0.560977 8.3:-42623025 MS.gene055882:CDS
TTTCAATCTCTTGGAGCTGG+AGG 0.561546 8.3:+42623836 None:intergenic
GCAACAACCTCGTTTCCCTC+AGG 0.563749 8.3:-42624444 MS.gene055882:intron
CAATGATGCCCAATGTGACA+CGG 0.564076 8.3:+42623763 None:intergenic
ACCATTGAGAACATGGCAGC+CGG 0.564288 8.3:-42623018 MS.gene055882:CDS
CTATGAGTCTTGTGTCTCGT+AGG 0.564360 8.3:-42624741 MS.gene055882:CDS
CAGAGGTAATGGTCGGACTC+GGG 0.570050 8.3:+42624770 None:intergenic
TATGGATCCGTACTGCTACT+GGG 0.576454 8.3:-42624537 MS.gene055882:CDS
GGCTGCCATGTTCTCAATGG+TGG 0.577603 8.3:+42623020 None:intergenic
ACAATCCAGTGTTTCCAGCA+CGG 0.581383 8.3:+42623911 None:intergenic
TGCCATGTTCTCAATGGTGG+TGG 0.582149 8.3:+42623023 None:intergenic
GGTTGTTGCAGTTGATGAAG+AGG 0.585577 8.3:+42624458 None:intergenic
TGGAAACTTTAATAATATGG+TGG 0.586549 8.3:-42623742 MS.gene055882:CDS
AGAAGATTTGAGTTGAAACA+TGG 0.586977 8.3:+42623228 None:intergenic
GGTGGGGCCCAGTAGCAGTA+CGG 0.597691 8.3:+42624530 None:intergenic
TGGCACGTGGCAGAACCCAT+TGG 0.600617 8.3:+42622798 None:intergenic
GAATGTTGCGGAATTTGCGG+AGG 0.603553 8.3:+42624617 None:intergenic
TCTACTCGACTTCGATGCTG+TGG 0.604755 8.3:-42623964 MS.gene055882:CDS
TGAGTCTTGTGTCTCGTAGG+TGG 0.607225 8.3:-42624738 MS.gene055882:CDS
AGATAGAGTTCTTCAAGGTG+GGG 0.613840 8.3:+42624514 None:intergenic
GTTGTTGCAGTTGATGAAGA+GGG 0.613860 8.3:+42624459 None:intergenic
TGTGGCATTTCTCAAGCACA+TGG 0.616958 8.3:+42623202 None:intergenic
CTCTTGGAGCTGGAGGAAGG+TGG 0.621502 8.3:+42623843 None:intergenic
CATTCAGAAACTGTTGACTC+CGG 0.626506 8.3:+42622999 None:intergenic
GAGTTCAACAGAGTCATGAG+TGG 0.635043 8.3:+42624489 None:intergenic
GTCCTCACAGAGGTAATGGT+CGG 0.636486 8.3:+42624763 None:intergenic
TAGATTACCTGAGGGAAACG+AGG 0.640585 8.3:+42624437 None:intergenic
AATGTTGCGGAATTTGCGGA+GGG 0.646491 8.3:+42624618 None:intergenic
AGAGATAGAGTTCTTCAAGG+TGG 0.653042 8.3:+42624512 None:intergenic
AGTCTTCCACTTTATCGATG+AGG 0.655384 8.3:-42624692 MS.gene055882:CDS
TGATGAGAACTCGAAGCTTG+TGG 0.658774 8.3:+42623184 None:intergenic
AGGTAATGGTCGGACTCGGG+AGG 0.661364 8.3:+42624773 None:intergenic
TTCAATGGACAAAACAAACA+AGG 0.664096 8.3:-42622850 MS.gene055882:CDS
AGACTTGTAGCTGCTGCCAG+AGG 0.667407 8.3:+42624710 None:intergenic
GGAAGGTGGAACAGGAACGT+TGG 0.667790 8.3:+42623857 None:intergenic
GTATGTGAATATATGTCAGG+TGG 0.673739 8.3:+42622967 None:intergenic
AATCCAGTGTTTCCAGCACG+GGG 0.676114 8.3:+42623913 None:intergenic
GTTAAGTTTAAGTTGGCACG+TGG 0.678948 8.3:+42622785 None:intergenic
TCTCATCATTCAGAGCAGCA+AGG 0.683961 8.3:-42623169 MS.gene055882:intron
TATGTGAATATATGTCAGGT+GGG 0.690997 8.3:+42622968 None:intergenic
ACTCTGGATACCTTAGAACA+GGG 0.693635 8.3:+42623283 None:intergenic
GTCCGACCATTACCTCTGTG+AGG 0.701738 8.3:-42624765 MS.gene055882:CDS
CTCTGGATACCTTAGAACAG+GGG 0.704828 8.3:+42623284 None:intergenic
ATGATGCCCAATGTGACACG+GGG 0.739109 8.3:+42623765 None:intergenic
AAGACTCATAGTCCTCACAG+AGG 0.808089 8.3:+42624753 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATATATTTTTGAGTCA+TGG - chr8.3:42624472-42624491 MS.gene055882:CDS 15.0%
!!! AGTTTAATTTAATATATGTC+TGG - chr8.3:42624417-42624436 MS.gene055882:intron 15.0%
!!! TATTTTCTTTGATATTTCAA+TGG - chr8.3:42624683-42624702 MS.gene055882:CDS 15.0%
!!! TTAGTTTTCCAAATTTTTAT+CGG - chr8.3:42623278-42623297 MS.gene055882:CDS 15.0%
!! AAAGTAGAGAAATATCATAT+TGG + chr8.3:42623905-42623924 None:intergenic 20.0%
!! AAATTCTGGATAAGTTATAA+CGG + chr8.3:42624083-42624102 None:intergenic 20.0%
!! AACCAATTCTACTTATTTAA+AGG + chr8.3:42623172-42623191 None:intergenic 20.0%
!! AACCTTTAAATAAGTAGAAT+TGG - chr8.3:42623167-42623186 MS.gene055882:intron 20.0%
!! CATTGGAAACTTTAATAATA+TGG - chr8.3:42623803-42623822 MS.gene055882:CDS 20.0%
!!! ATGTTAGTAATTAGTTCTTA+TGG - chr8.3:42623971-42623990 MS.gene055882:CDS 20.0%
!!! CATTTGTTGAATATATTTTG+CGG - chr8.3:42624634-42624653 MS.gene055882:CDS 20.0%
!!! GTGAAGTTTTTATTTTTGAA+TGG - chr8.3:42623945-42623964 MS.gene055882:CDS 20.0%
!!! TCATTGTTTTTATTTTTGAC+TGG - chr8.3:42624129-42624148 MS.gene055882:intron 20.0%
! AAAACAAATTAGATTACCTG+AGG + chr8.3:42623123-42623142 None:intergenic 25.0%
! AAACAAATTAGATTACCTGA+GGG + chr8.3:42623122-42623141 None:intergenic 25.0%
! AAATATCATATTGGTCATCT+CGG + chr8.3:42623896-42623915 None:intergenic 25.0%
! AATTCTGGATAAGTTATAAC+GGG + chr8.3:42624082-42624101 None:intergenic 25.0%
! GTTATAACTTATCCAGAATT+TGG - chr8.3:42624082-42624101 MS.gene055882:intron 25.0%
! TGAAGTAAATTTCCAAATTC+TGG + chr8.3:42624097-42624116 None:intergenic 25.0%
! TGGAAACTTTAATAATATGG+TGG - chr8.3:42623806-42623825 MS.gene055882:CDS 25.0%
!! TTAATGCTGGAAATCAATTT+TGG - chr8.3:42623416-42623435 MS.gene055882:intron 25.0%
!!! ATGTTTTTGATATACGTAGT+TGG - chr8.3:42624183-42624202 MS.gene055882:intron 25.0%
ATGTTTCAACTCAAATCTTC+TGG - chr8.3:42624322-42624341 MS.gene055882:intron 30.0%
ATTCACATACAAGGATATCA+AGG - chr8.3:42624594-42624613 MS.gene055882:CDS 30.0%
ATTGGTAGATTTCAATCTCT+TGG + chr8.3:42623724-42623743 None:intergenic 30.0%
CATTGACACCGATAAAAATT+TGG + chr8.3:42623289-42623308 None:intergenic 30.0%
CTGACATATATTCACATACA+AGG - chr8.3:42624585-42624604 MS.gene055882:CDS 30.0%
CTTGTATGTGAATATATGTC+AGG + chr8.3:42624587-42624606 None:intergenic 30.0%
TAGCAGAGTTAAGTTTAAGT+TGG + chr8.3:42624773-42624792 None:intergenic 30.0%
TATGTGAATATATGTCAGGT+GGG + chr8.3:42624583-42624602 None:intergenic 30.0%
TTCAATGGACAAAACAAACA+AGG - chr8.3:42624698-42624717 MS.gene055882:CDS 30.0%
! AAGATTATCTGAGATACCAA+TGG - chr8.3:42624734-42624753 MS.gene055882:CDS 30.0%
! AGATTATCTGAGATACCAAT+GGG - chr8.3:42624735-42624754 MS.gene055882:CDS 30.0%
! GACAAAATTTTCGAATGTTG+CGG + chr8.3:42622946-42622965 None:intergenic 30.0%
! GGGAAAACATGTTTAAGTTA+TGG - chr8.3:42622993-42623012 MS.gene055882:CDS 30.0%
! GTTGAATATATTTTGCGGAA+CGG - chr8.3:42624639-42624658 MS.gene055882:CDS 30.0%
! TTAAACATGTTTTCCCAATC+CGG + chr8.3:42622989-42623008 None:intergenic 30.0%
! TTGAATATATTTTGCGGAAC+GGG - chr8.3:42624640-42624659 MS.gene055882:CDS 30.0%
!! AGAAGATTTGAGTTGAAACA+TGG + chr8.3:42624323-42624342 None:intergenic 30.0%
!! ATAAGTAGAATTGGTTTGCA+CGG - chr8.3:42623176-42623195 MS.gene055882:CDS 30.0%
!!! GAGTATTTTGGCAATTTCAT+AGG + chr8.3:42623384-42623403 None:intergenic 30.0%
!!! TATATTTTTGAGTCATGGCA+TGG - chr8.3:42624477-42624496 MS.gene055882:CDS 30.0%
!!! TGTTTTTTGATGTACGTAGT+TGG - chr8.3:42624000-42624019 MS.gene055882:CDS 30.0%
AGTCCAAGTGAAATTGTGAT+TGG + chr8.3:42623742-42623761 None:intergenic 35.0%
CTACCAATCACAATTTCACT+TGG - chr8.3:42623736-42623755 MS.gene055882:CDS 35.0%
CTAGACACAACACTAATACA+TGG + chr8.3:42623315-42623334 None:intergenic 35.0%
GTATGTGAATATATGTCAGG+TGG + chr8.3:42624584-42624603 None:intergenic 35.0%
TTGTACATGATAACAAGCGA+TGG + chr8.3:42624227-42624246 None:intergenic 35.0%
TTGTTATCATGTACAAGCAG+TGG - chr8.3:42624231-42624250 MS.gene055882:intron 35.0%
! CGATGTCTGTTTTCATTTTC+CGG - chr8.3:42622967-42622986 MS.gene055882:CDS 35.0%
! CTGTTTTCATTTTCCGGATT+GGG - chr8.3:42622973-42622992 MS.gene055882:CDS 35.0%
! GACATGACTCATGAGTATTT+TGG + chr8.3:42623396-42623415 None:intergenic 35.0%
! TCTGTTTTCATTTTCCGGAT+TGG - chr8.3:42622972-42622991 MS.gene055882:CDS 35.0%
AACTCTGGATACCTTAGAAC+AGG + chr8.3:42624269-42624288 None:intergenic 40.0%
ACGGAGAGAAAGGAAACTAT+TGG + chr8.3:42623612-42623631 None:intergenic 40.0%
ACTCTGGATACCTTAGAACA+GGG + chr8.3:42624268-42624287 None:intergenic 40.0%
AGAGATAGAGTTCTTCAAGG+TGG + chr8.3:42623039-42623058 None:intergenic 40.0%
AGATACAGCTTCTTCAGTGA+TGG + chr8.3:42623567-42623586 None:intergenic 40.0%
AGATAGAGTTCTTCAAGGTG+GGG + chr8.3:42623037-42623056 None:intergenic 40.0%
AGATTTCAATCTCTTGGAGC+TGG + chr8.3:42623718-42623737 None:intergenic 40.0%
AGTCTTCCACTTTATCGATG+AGG - chr8.3:42622856-42622875 MS.gene055882:CDS 40.0%
CATGAGTCATGTCTTAATGC+TGG - chr8.3:42623403-42623422 MS.gene055882:intron 40.0%
GAGATAGAGTTCTTCAAGGT+GGG + chr8.3:42623038-42623057 None:intergenic 40.0%
TGCTTGTACACGATAACAAC+AGG + chr8.3:42624045-42624064 None:intergenic 40.0%
TGGAGAGATAGAGTTCTTCA+AGG + chr8.3:42623042-42623061 None:intergenic 40.0%
TTCGAATGTTGCGGAATTTG+CGG + chr8.3:42622937-42622956 None:intergenic 40.0%
TTCGATGCAATCACAAGTGT+TGG + chr8.3:42623254-42623273 None:intergenic 40.0%
TTCGCGTCATTTGACATCAA+AGG - chr8.3:42623923-42623942 MS.gene055882:CDS 40.0%
! CGATCTAATTTGCGAAACTC+TGG + chr8.3:42624284-42624303 None:intergenic 40.0%
! CTCGGATGTCTTTGAGAATA+GGG + chr8.3:42623878-42623897 None:intergenic 40.0%
! GACTGGCTAATGCTAGTAAT+TGG - chr8.3:42624146-42624165 MS.gene055882:intron 40.0%
! TCTCGGATGTCTTTGAGAAT+AGG + chr8.3:42623879-42623898 None:intergenic 40.0%
!! AGCACAGTGTTGACGAATAA+TGG + chr8.3:42622908-42622927 None:intergenic 40.0%
!! AGTTGATGAAGAGGGTAGAA+GGG + chr8.3:42623084-42623103 None:intergenic 40.0%
!! CATTCAGAAACTGTTGACTC+CGG + chr8.3:42624552-42624571 None:intergenic 40.0%
!! GTTAAGTTTAAGTTGGCACG+TGG + chr8.3:42624766-42624785 None:intergenic 40.0%
!! GTTGTTGCAGTTGATGAAGA+GGG + chr8.3:42623092-42623111 None:intergenic 40.0%
AACCACCACCATTGAGAACA+TGG - chr8.3:42624523-42624542 MS.gene055882:CDS 45.0%
AAGACTCATAGTCCTCACAG+AGG + chr8.3:42622798-42622817 None:intergenic 45.0%
AATGATGCCCAATGTGACAC+GGG + chr8.3:42623787-42623806 None:intergenic 45.0%
AATGTTGCGGAATTTGCGGA+GGG + chr8.3:42622933-42622952 None:intergenic 45.0%
ACAATCCAGTGTTTCCAGCA+CGG + chr8.3:42623640-42623659 None:intergenic 45.0%
ATAGATCCCCGTGTCACATT+GGG - chr8.3:42623777-42623796 MS.gene055882:CDS 45.0%
CAATGATGCCCAATGTGACA+CGG + chr8.3:42623788-42623807 None:intergenic 45.0%
CATAGTCCTCACAGAGGTAA+TGG + chr8.3:42622792-42622811 None:intergenic 45.0%
CATGATAACAAGCGATGGTG+CGG + chr8.3:42624222-42624241 None:intergenic 45.0%
CGAAAAATTCGCCTTCACCT+GGG + chr8.3:42623854-42623873 None:intergenic 45.0%
CTCTGGATACCTTAGAACAG+GGG + chr8.3:42624267-42624286 None:intergenic 45.0%
CTTCGTCCTCATCGATAAAG+TGG + chr8.3:42622865-42622884 None:intergenic 45.0%
GAAAAATTCGCCTTCACCTG+GGG + chr8.3:42623853-42623872 None:intergenic 45.0%
GAGTTCAACAGAGTCATGAG+TGG + chr8.3:42623062-42623081 None:intergenic 45.0%
TACACGATAACAACAGGCGA+TGG + chr8.3:42624039-42624058 None:intergenic 45.0%
TAGATTACCTGAGGGAAACG+AGG + chr8.3:42623114-42623133 None:intergenic 45.0%
TATAGATCCCCGTGTCACAT+TGG - chr8.3:42623776-42623795 MS.gene055882:CDS 45.0%
TATGGATCCGTACTGCTACT+GGG - chr8.3:42623011-42623030 MS.gene055882:CDS 45.0%
TCGAAAAATTCGCCTTCACC+TGG + chr8.3:42623855-42623874 None:intergenic 45.0%
TCTCATCATTCAGAGCAGCA+AGG - chr8.3:42624379-42624398 MS.gene055882:intron 45.0%
TGATGAGAACTCGAAGCTTG+TGG + chr8.3:42624367-42624386 None:intergenic 45.0%
TGTGGCATTTCTCAAGCACA+TGG + chr8.3:42624349-42624368 None:intergenic 45.0%
TTATGGATCCGTACTGCTAC+TGG - chr8.3:42623010-42623029 MS.gene055882:CDS 45.0%
TTCTGATTGAATGCGTGTCC+CGG - chr8.3:42623203-42623222 MS.gene055882:CDS 45.0%
TTTCAATCTCTTGGAGCTGG+AGG + chr8.3:42623715-42623734 None:intergenic 45.0%
! CTATGAGTCTTGTGTCTCGT+AGG - chr8.3:42622807-42622826 MS.gene055882:CDS 45.0%
! TTTCTCGATGTCTTTTCCCC+AGG - chr8.3:42623834-42623853 MS.gene055882:CDS 45.0%
!! AAGTTATAACGGGCAGGAAG+CGG + chr8.3:42624072-42624091 None:intergenic 45.0%
!! CAGTTGATGAAGAGGGTAGA+AGG + chr8.3:42623085-42623104 None:intergenic 45.0%
!! CTGGATAAGTTATAACGGGC+AGG + chr8.3:42624078-42624097 None:intergenic 45.0%
!! GCAATCACAAGTGTTGGTGT+CGG + chr8.3:42623248-42623267 None:intergenic 45.0%
!! GGTTGTTGCAGTTGATGAAG+AGG + chr8.3:42623093-42623112 None:intergenic 45.0%
AATCCAGTGTTTCCAGCACG+GGG + chr8.3:42623638-42623657 None:intergenic 50.0%
AATCTCTTGGAGCTGGAGGA+AGG + chr8.3:42623711-42623730 None:intergenic 50.0%
ACCATTGAGAACATGGCAGC+CGG - chr8.3:42624530-42624549 MS.gene055882:CDS 50.0%
ATGATGCCCAATGTGACACG+GGG + chr8.3:42623786-42623805 None:intergenic 50.0%
CAATCCAGTGTTTCCAGCAC+GGG + chr8.3:42623639-42623658 None:intergenic 50.0%
CACTTTCTGCCCCTGTTCTA+AGG - chr8.3:42624255-42624274 MS.gene055882:intron 50.0%
CGTGTCACATTGGGCATCAT+TGG - chr8.3:42623786-42623805 MS.gene055882:CDS 50.0%
CTTAGAACAGGGGCAGAAAG+TGG + chr8.3:42624257-42624276 None:intergenic 50.0%
GAATGTTGCGGAATTTGCGG+AGG + chr8.3:42622934-42622953 None:intergenic 50.0%
GTCTAGCGTGTGTGCTTCAT+AGG - chr8.3:42623329-42623348 MS.gene055882:intron 50.0%
TCTACTCGACTTCGATGCTG+TGG - chr8.3:42623584-42623603 MS.gene055882:intron 50.0%
TGCCATGTTCTCAATGGTGG+TGG + chr8.3:42624528-42624547 None:intergenic 50.0%
TGGTGTCTCTTGTTGCTGGT+AGG - chr8.3:42624497-42624516 MS.gene055882:CDS 50.0%
TGTCTCTTGTTGCTGGTAGG+AGG - chr8.3:42624500-42624519 MS.gene055882:CDS 50.0%
! ACAGAGGTAATGGTCGGACT+CGG + chr8.3:42622782-42622801 None:intergenic 50.0%
! GATGTCTTTTCCCCAGGTGA+AGG - chr8.3:42623840-42623859 MS.gene055882:CDS 50.0%
! GTCCTCACAGAGGTAATGGT+CGG + chr8.3:42622788-42622807 None:intergenic 50.0%
! TGAGTCTTGTGTCTCGTAGG+TGG - chr8.3:42622810-42622829 MS.gene055882:CDS 50.0%
!! AGTTATAACGGGCAGGAAGC+GGG + chr8.3:42624071-42624090 None:intergenic 50.0%
!! TTTGCGGAACGGGCTTGTTT+TGG - chr8.3:42624650-42624669 MS.gene055882:CDS 50.0%
AGACTTGTAGCTGCTGCCAG+AGG + chr8.3:42622841-42622860 None:intergenic 55.0%
GCAACAACCTCGTTTCCCTC+AGG - chr8.3:42623104-42623123 MS.gene055882:intron 55.0%
GGAAGGTGGAACAGGAACGT+TGG + chr8.3:42623694-42623713 None:intergenic 55.0%
GGCATGGTGTCTCTTGTTGC+TGG - chr8.3:42624493-42624512 MS.gene055882:CDS 55.0%
GGCTGCCATGTTCTCAATGG+TGG + chr8.3:42624531-42624550 None:intergenic 55.0%
GTCCGACCATTACCTCTGTG+AGG - chr8.3:42622783-42622802 MS.gene055882:CDS 55.0%
TCCGGCTGCCATGTTCTCAA+TGG + chr8.3:42624534-42624553 None:intergenic 55.0%
! CAGAGGTAATGGTCGGACTC+GGG + chr8.3:42622781-42622800 None:intergenic 55.0%
AATGGTCGGACTCGGGAGGA+AGG + chr8.3:42622774-42622793 None:intergenic 60.0%
ACACAGCGCGTGTCAGACAC+CGG + chr8.3:42623225-42623244 None:intergenic 60.0%
CTCTTGGAGCTGGAGGAAGG+TGG + chr8.3:42623708-42623727 None:intergenic 60.0%
CTTGTAGCTGCTGCCAGAGG+TGG + chr8.3:42622838-42622857 None:intergenic 60.0%
GAGCTGGAGGAAGGTGGAAC+AGG + chr8.3:42623702-42623721 None:intergenic 60.0%
TGGCACGTGGCAGAACCCAT+TGG + chr8.3:42624753-42624772 None:intergenic 60.0%
TGTTTCCAGCACGGGGCAGA+CGG + chr8.3:42623631-42623650 None:intergenic 60.0%
! AGGTAATGGTCGGACTCGGG+AGG + chr8.3:42622778-42622797 None:intergenic 60.0%
CACAGCGCGTGTCAGACACC+GGG + chr8.3:42623224-42623243 None:intergenic 65.0%
CACGGGGCAGACGGAGAGAA+AGG + chr8.3:42623622-42623641 None:intergenic 65.0%
CTGCCCCGTGCTGGAAACAC+TGG - chr8.3:42623632-42623651 MS.gene055882:CDS 65.0%
GGTGGGGCCCAGTAGCAGTA+CGG + chr8.3:42623021-42623040 None:intergenic 65.0%
CTCGTAGGTGGCGCCACCTC+TGG - chr8.3:42622822-42622841 MS.gene055882:CDS 70.0%
TCTCTCCGTCTGCCCCGTGC+TGG - chr8.3:42623623-42623642 MS.gene055882:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 42622767 42624803 42622767 ID=MS.gene055882
chr8.3 mRNA 42622767 42624803 42622767 ID=MS.gene055882.t1;Parent=MS.gene055882
chr8.3 exon 42624445 42624803 42624445 ID=MS.gene055882.t1.exon1;Parent=MS.gene055882.t1
chr8.3 CDS 42624445 42624803 42624445 ID=cds.MS.gene055882.t1;Parent=MS.gene055882.t1
chr8.3 exon 42623626 42624058 42623626 ID=MS.gene055882.t1.exon2;Parent=MS.gene055882.t1
chr8.3 CDS 42623626 42624058 42623626 ID=cds.MS.gene055882.t1;Parent=MS.gene055882.t1
chr8.3 exon 42623170 42623319 42623170 ID=MS.gene055882.t1.exon3;Parent=MS.gene055882.t1
chr8.3 CDS 42623170 42623319 42623170 ID=cds.MS.gene055882.t1;Parent=MS.gene055882.t1
chr8.3 exon 42622767 42623051 42622767 ID=MS.gene055882.t1.exon4;Parent=MS.gene055882.t1
chr8.3 CDS 42622767 42623051 42622767 ID=cds.MS.gene055882.t1;Parent=MS.gene055882.t1
Gene Sequence

>MS.gene055882

ATGTCCTTCCTCCCGAGTCCGACCATTACCTCTGTGAGGACTATGAGTCTTGTGTCTCGTAGGTGGCGCCACCTCTGGCAGCAGCTACAAGTCTTCCACTTTATCGATGAGGACGAAGACGTAGAGTTCAATGACTTTCCATTATTCGTCAACACTGTGCTCACCCTCCGCAAATTCCGCAACATTCGAAAATTTTGTCTCGATGTCTGTTTTCATTTTCCGGATTGGGAAAACATGTTTAAGTTATGGATCCGTACTGCTACTGGGCCCCACCTTGAAGAACTCTATCTCTCCACTCATGACTCTGTTGAACTCCCTTCTACCCTCTTCATCAACTGCAACAACCTCGTTTCCCTCAGGTAATCTAATTTGTTTTCGCTAATAGCTAGTTTCATTCAAAAACCTTTAAATAAGTAGAATTGGTTTGCACGGAGACTTCTGATTGAATGCGTGTCCCGGTGTCTGACACGCGCTGTGTCCGACACCAACACTTGTGATTGCATCGAATTATTTAGTTTTCCAAATTTTTATCGGTGTCAATGTGTCCATGTATTAGTGTTGTGTCTAGCGTGTGTGCTTCATAGGTCTGACTTCTGTTTCAAAATTGTTTTAATCCTATGAAATTGCCAAAATACTCATGAGTCATGTCTTAATGCTGGAAATCAATTTTGGTATAAATTTTACATATTATCTTCAAATAGACAATGTTATATATAATCTCTCTTGTCTCTTGAAAACACTGCAGTCTTACGTGTGTAGAAATCAAAATTAAAGTTCAACATTGTTCATTTCATTTTCCATCACTGAAGAAGCTGTATCTACTCGACTTCGATGCTGTGGATCCAATAGTTTCCTTTCTCTCCGTCTGCCCCGTGCTGGAAACACTGGATTGTGATTACTTTTGCTATAAAGACATATCTTTGACCAACGTTCCTGTTCCACCTTCCTCCAGCTCCAAGAGATTGAAATCTACCAATCACAATTTCACTTGGACTTATTTTAAGTTAGATATAGATCCCCGTGTCACATTGGGCATCATTGGAAACTTTAATAATATGGTGGAAGCATTTCTCGATGTCTTTTCCCCAGGTGAAGGCGAATTTTTCGACCCTATTCTCAAAGACATCCGAGATGACCAATATGATATTTCTCTACTTTCGCGTCATTTGACATCAAAGGTGAAGTTTTTATTTTTGAATGGAAAATGTTAGTAATTAGTTCTTATGGTTTATATGTTTTTTGATGTACGTAGTTGGTACTAATATTGAACCATCGCCTGTTGTTATCGTGTACAAGCAGTGCCCGCTTCCTGCCCGTTATAACTTATCCAGAATTTGGAAATTTACTTCATCTAAATTTATTTCATTGTTTTTATTTTTGACTGGCTAATGCTAGTAATTGGTTGTTATGCATTATATGTTTTTGATATACGTAGTTGGTACTAATATTGCACCGCACCATCGCTTGTTATCATGTACAAGCAGTGGCCACTTTCTGCCCCTGTTCTAAGGTATCCAGAGTTTCGCAAATTAGATCGTCTAAAGTTCATTCTTCCATGTTTCAACTCAAATCTTCTGGTCCATGTGCTTGAGAAATGCCACAAGCTTCGAGTTCTCATCATTCAGAGCAGCAAGGTATGTTGACTTCTCAAGTTTAATTTAATATATGTCTGGTTTGTCTATATATGCATGCAATCTATCTGTGCAAAAATATATTTTTGAGTCATGGCATGGTGTCTCTTGTTGCTGGTAGGAGGAACCACCACCATTGAGAACATGGCAGCCGGAGTCAACAGTTTCTGAATGTCTCAAATCCCACCTGACATATATTCACATACAAGGATATCAAGGACTTGAAGATGAGTTAACATTTGTTGAATATATTTTGCGGAACGGGCTTGTTTTGGAGACATTGCTTATTTTCTTTGATATTTCAATGGACAAAACAAACAAGGACTGCTCTTTCAAAAGATTATCTGAGATACCAATGGGTTCTGCCACGTGCCAACTTAAACTTAACTCTGCTATAACTCCTTAA
Protein sequence

>MS.gene055882.t1

MSFLPSPTITSVRTMSLVSRRWRHLWQQLQVFHFIDEDEDVEFNDFPLFVNTVLTLRKFRNIRKFCLDVCFHFPDWENMFKLWIRTATGPHLEELYLSTHDSVELPSTLFINCNNLVSLSLTCVEIKIKVQHCSFHFPSLKKLYLLDFDAVDPIVSFLSVCPVLETLDCDYFCYKDISLTNVPVPPSSSSKRLKSTNHNFTWTYFKLDIDPRVTLGIIGNFNNMVEAFLDVFSPGEGEFFDPILKDIRDDQYDISLLSRHLTSKWPLSAPVLRYPEFRKLDRLKFILPCFNSNLLVHVLEKCHKLRVLIIQSSKEEPPPLRTWQPESTVSECLKSHLTYIHIQGYQGLEDELTFVEYILRNGLVLETLLIFFDISMDKTNKDCSFKRLSEIPMGSATCQLKLNSAITP