AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63256


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63256.t1 MTR_8g062300 55.800 500 164 13 4 466 3 482 4.34e-167 479
MS.gene63256.t1 MTR_8g070950 55.882 476 161 12 1 465 1 438 9.09e-161 462
MS.gene63256.t1 MTR_8g062010 56.703 455 157 12 22 465 9 434 7.96e-153 441
MS.gene63256.t1 MTR_8g062080 53.306 484 174 14 1 466 1 450 1.07e-150 437
MS.gene63256.t1 MTR_8g062310 52.052 463 180 10 6 465 9 432 9.59e-149 431
MS.gene63256.t1 MTR_8g469020 47.119 486 184 13 19 465 4 455 1.26e-132 391
MS.gene63256.t1 MTR_8g058965 47.316 503 186 13 1 466 1 461 9.30e-132 389
MS.gene63256.t1 MTR_4g050250 47.085 446 156 18 9 407 8 420 1.41e-105 320
MS.gene63256.t1 MTR_8g467790 47.573 412 126 13 21 406 147 494 3.10e-100 310
MS.gene63256.t1 MTR_2g083840 36.157 484 248 15 6 461 7 457 1.03e-73 239
MS.gene63256.t1 MTR_2g086020 79.310 145 30 0 321 465 175 319 4.64e-72 231
MS.gene63256.t1 MTR_2g086020 57.419 155 60 3 49 202 1 150 6.04e-45 159
MS.gene63256.t1 MTR_8g014260 37.423 489 240 21 1 461 1 451 9.83e-72 234
MS.gene63256.t1 MTR_8g468810 35.861 488 248 17 9 461 6 463 1.13e-70 231
MS.gene63256.t1 MTR_8g062270 35.714 476 233 20 21 460 15 453 1.01e-68 226
MS.gene63256.t1 MTR_8g058970 34.653 505 255 19 3 461 2 477 1.25e-65 219
MS.gene63256.t1 MTR_8g467800 35.934 487 254 17 6 465 2 457 1.59e-65 218
MS.gene63256.t1 MTR_4g032730 33.539 486 244 14 21 460 14 466 2.92e-62 209
MS.gene63256.t1 MTR_5g092960 33.750 480 248 13 18 460 15 461 2.21e-56 194
MS.gene63256.t1 MTR_8g445780 35.955 445 199 18 1 414 1 390 7.78e-55 188
MS.gene63256.t1 MTR_8g468840 33.265 487 258 17 1 459 1 448 2.21e-54 188
MS.gene63256.t1 MTR_8g468760 33.053 475 231 15 15 460 2 418 5.26e-53 184
MS.gene63256.t1 MTR_8g468810 34.761 397 194 16 9 371 6 371 2.14e-46 165
MS.gene63256.t1 MTR_4g024710 35.667 300 171 9 169 461 63 347 2.83e-40 148
MS.gene63256.t1 MTR_8g468810 37.143 315 148 13 9 294 6 299 2.79e-38 142
MS.gene63256.t1 MTR_8g468810 37.261 314 149 13 9 294 6 299 2.83e-38 142
MS.gene63256.t1 MTR_8g468810 37.261 314 149 13 9 294 6 299 3.12e-38 142
MS.gene63256.t1 MTR_5g092960 33.854 384 197 10 18 371 15 371 7.06e-36 137
MS.gene63256.t1 MTR_8g467800 37.419 310 155 15 6 294 2 293 2.73e-33 129
MS.gene63256.t1 MTR_8g014210 39.594 197 103 6 266 461 50 231 5.90e-31 119
MS.gene63256.t1 MTR_8g077460 44.966 149 78 4 314 461 230 375 7.48e-31 122
MS.gene63256.t1 MTR_8g077460 37.885 227 111 11 22 234 10 220 1.37e-21 96.7
MS.gene63256.t1 MTR_4g024745 34.602 289 157 12 168 444 16 284 1.09e-29 117
MS.gene63256.t1 MTR_7g098510 28.270 474 244 18 1 461 1 391 8.82e-29 117
MS.gene63256.t1 MTR_3g099800 62.069 87 32 1 373 458 19 105 1.56e-27 106
MS.gene63256.t1 MTR_7g032380 27.912 455 210 19 19 461 8 356 8.72e-27 111
MS.gene63256.t1 MTR_8g014160 32.500 280 149 10 22 278 41 303 8.46e-25 106
MS.gene63256.t1 MTR_8g014160 54.737 95 37 3 369 461 335 425 2.41e-20 93.6
MS.gene63256.t1 MTR_5g084070 27.193 456 279 17 12 453 3 419 5.85e-23 101
MS.gene63256.t1 MTR_7g098480 27.254 477 241 18 1 460 1 388 1.59e-22 100
MS.gene63256.t1 MTR_3g108150 28.352 455 235 20 19 460 10 386 1.25e-21 96.7
MS.gene63256.t1 MTR_5g021550 39.306 173 81 9 1 160 1 162 1.25e-21 91.7
MS.gene63256.t1 MTR_5g080710 28.770 431 252 19 21 433 32 425 3.40e-20 93.2
MS.gene63256.t1 MTR_7g056433 25.885 452 249 16 22 461 12 389 3.25e-19 89.7
MS.gene63256.t1 MTR_7g032370 25.629 437 230 17 34 461 2 352 1.06e-18 87.8
MS.gene63256.t1 MTR_7g056430 25.170 441 229 14 22 453 9 357 3.01e-18 88.6
MS.gene63256.t1 MTR_7g056420 25.170 441 229 14 22 453 9 357 3.90e-18 88.2
MS.gene63256.t1 MTR_8g014290 36.667 180 75 9 1 161 1 160 3.93e-18 82.0
MS.gene63256.t1 MTR_7g033990 25.000 448 243 17 20 454 9 376 2.05e-17 84.3
MS.gene63256.t1 MTR_8g014230 42.857 84 46 2 371 454 17 98 5.09e-17 77.0
MS.gene63256.t1 MTR_4g093690 31.579 228 127 10 9 225 5 214 2.58e-16 79.3
MS.gene63256.t1 MTR_3g467400 26.096 456 230 17 22 461 3 367 4.29e-16 80.1
MS.gene63256.t1 MTR_7g056447 35.821 201 103 10 18 211 5 186 4.43e-16 79.0
MS.gene63256.t1 MTR_7g007080 27.434 452 232 23 22 454 4 378 5.08e-16 80.1
MS.gene63256.t1 MTR_1g041245 33.654 208 112 9 19 218 8 197 1.77e-15 78.2
MS.gene63256.t1 MTR_1g041245 34.783 138 80 4 332 461 251 386 1.23e-12 69.7
MS.gene63256.t1 MTR_7g115270 35.000 220 106 12 19 220 9 209 5.64e-15 77.0
MS.gene63256.t1 MTR_4g039440 25.793 473 242 20 14 461 24 412 1.75e-14 75.5
MS.gene63256.t1 MTR_2g007450 27.027 481 258 22 7 458 1 417 2.00e-14 75.5
MS.gene63256.t1 MTR_5g083890 24.719 445 235 17 18 431 2 377 2.10e-14 75.9
MS.gene63256.t1 MTR_2g007500 32.843 204 100 8 20 214 12 187 2.44e-14 74.3
MS.gene63256.t1 MTR_8g085430 31.481 216 117 8 13 214 2 200 2.91e-14 73.9
MS.gene63256.t1 MTR_3g107100 29.439 214 123 11 22 225 11 206 5.96e-14 73.9
MS.gene63256.t1 MTR_5g073420 31.132 212 124 9 13 216 2 199 2.79e-13 71.6
MS.gene63256.t1 MTR_7g034110 45.122 82 41 2 19 100 8 85 3.14e-13 71.2
MS.gene63256.t1 MTR_4g024770 51.899 79 29 4 1 79 8 77 3.99e-13 65.1
MS.gene63256.t1 MTR_5g061680 30.332 211 123 8 13 215 2 196 5.74e-13 70.1
MS.gene63256.t1 MTR_4g024720 38.168 131 63 6 9 131 7 127 9.31e-13 67.8
MS.gene63256.t1 MTR_5g008950 32.836 201 100 10 24 214 1 176 1.97e-12 68.9
MS.gene63256.t1 MTR_3g107120 24.249 466 257 18 22 465 9 400 2.06e-12 68.9
MS.gene63256.t1 MTR_1g095750 39.175 97 55 3 19 115 43 135 2.06e-12 65.1
MS.gene63256.t1 MTR_3g099830 31.169 231 120 12 11 229 1 204 5.57e-12 67.4
MS.gene63256.t1 MTR_7g055943 24.569 464 246 22 21 461 39 421 9.28e-12 67.0
MS.gene63256.t1 MTR_3g105060 28.019 207 136 6 19 224 11 205 9.68e-12 66.6
MS.gene63256.t1 MTR_7g034115 31.579 209 119 7 19 220 8 199 1.32e-11 66.6
MS.gene63256.t1 MTR_4g056020 32.039 206 110 9 22 215 9 196 1.45e-11 66.6
MS.gene63256.t1 MTR_7g098570 31.618 136 83 2 329 457 257 389 2.56e-11 65.9
MS.gene63256.t1 MTR_6g044560 24.832 298 152 10 15 271 171 437 2.61e-11 66.2
MS.gene63256.t1 MTR_1089s0010 28.571 203 119 8 21 215 7 191 3.20e-11 65.1
MS.gene63256.t1 MTR_6g040270 30.151 199 115 8 24 215 10 191 9.12e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63256.t1 AT4G26340 26.850 473 260 16 21 461 1 419 2.93e-21 96.3
MS.gene63256.t1 AT1G32375 25.806 465 278 19 21 461 1 422 5.97e-21 95.1
MS.gene63256.t1 AT1G32375 25.806 465 278 19 21 461 1 422 5.97e-21 95.1
MS.gene63256.t1 AT4G13965 28.571 455 263 19 22 458 10 420 1.01e-20 94.7
MS.gene63256.t1 AT1G78750 25.833 480 295 20 9 458 7 455 2.36e-19 90.9
MS.gene63256.t1 AT1G78750 25.833 480 295 20 9 458 7 455 2.36e-19 90.9
MS.gene63256.t1 AT4G10400 25.272 459 273 16 21 460 1 408 1.10e-18 88.2
MS.gene63256.t1 AT4G10400 25.272 459 273 16 21 460 1 408 1.10e-18 88.2
MS.gene63256.t1 AT4G10400 25.272 459 273 16 21 460 1 408 1.10e-18 88.2
MS.gene63256.t1 AT5G60610 25.117 426 255 19 21 425 1 383 1.87e-18 87.4
MS.gene63256.t1 AT5G60610 25.117 426 255 19 21 425 1 383 1.87e-18 87.4
MS.gene63256.t1 AT5G56560 26.049 453 281 19 23 461 6 418 6.55e-17 83.2
MS.gene63256.t1 AT1G69630 24.790 476 304 14 1 451 1 447 1.36e-15 79.3
MS.gene63256.t1 AT3G26922 28.179 291 171 10 22 307 14 271 1.52e-15 77.8
MS.gene63256.t1 AT3G26922 28.179 291 171 10 22 307 14 271 1.52e-15 77.8
MS.gene63256.t1 AT1G55030 25.542 415 253 18 20 419 7 380 1.77e-15 78.6
MS.gene63256.t1 AT2G26860 26.636 428 256 18 21 425 1 393 1.78e-15 78.6
MS.gene63256.t1 AT2G26860 26.636 428 256 18 21 425 1 393 1.78e-15 78.6
MS.gene63256.t1 AT1G55030 25.060 415 255 17 20 419 17 390 2.16e-15 78.6
MS.gene63256.t1 AT5G22670 26.498 434 250 18 22 424 11 406 3.68e-15 77.8
MS.gene63256.t1 AT1G13780 24.628 471 299 19 19 458 7 452 1.39e-14 76.3
MS.gene63256.t1 AT1G16930 26.446 484 263 21 22 461 15 449 1.71e-14 75.9
MS.gene63256.t1 AT1G16930 26.446 484 263 21 22 461 15 449 1.71e-14 75.9
MS.gene63256.t1 AT1G16930 26.446 484 263 21 22 461 15 449 1.71e-14 75.9
MS.gene63256.t1 AT5G50270 24.726 457 261 16 21 443 1 408 2.83e-14 75.1
MS.gene63256.t1 AT2G26030 25.106 470 284 22 22 458 4 438 6.46e-14 73.9
MS.gene63256.t1 AT2G26030 25.106 470 284 22 22 458 4 438 6.46e-14 73.9
MS.gene63256.t1 AT4G09920 29.515 227 133 9 21 240 1 207 1.66e-13 71.2
MS.gene63256.t1 AT4G09920 29.515 227 133 9 21 240 1 207 1.66e-13 71.2
MS.gene63256.t1 AT4G09920 29.515 227 133 9 21 240 1 207 1.66e-13 71.2
MS.gene63256.t1 AT3G58920 26.749 486 293 21 21 461 1 468 2.97e-13 72.0
MS.gene63256.t1 AT4G09920 28.899 218 129 8 21 231 1 199 3.10e-13 70.9
MS.gene63256.t1 AT4G09920 28.899 218 129 8 21 231 1 199 3.10e-13 70.9
MS.gene63256.t1 AT2G26030 24.947 473 286 23 22 458 4 443 3.16e-13 72.0
MS.gene63256.t1 AT5G56400 24.043 470 282 18 21 461 32 455 3.78e-13 71.6
MS.gene63256.t1 AT1G66310 25.895 475 285 21 9 458 7 439 7.94e-13 70.5
MS.gene63256.t1 AT5G44950 23.758 463 296 18 22 458 4 435 6.29e-12 67.8
MS.gene63256.t1 AT1G13780 28.571 224 130 9 19 229 7 213 7.63e-12 67.0
MS.gene63256.t1 AT5G35995 28.767 219 132 7 22 234 5 205 1.02e-11 67.4
MS.gene63256.t1 AT5G35995 28.767 219 132 7 22 234 5 205 1.02e-11 67.4
MS.gene63256.t1 AT3G59200 30.882 204 111 11 22 212 7 193 1.04e-11 66.6
MS.gene63256.t1 AT1G78730 27.053 207 118 6 10 214 8 183 1.08e-11 67.0
MS.gene63256.t1 AT5G56440 31.884 207 101 11 21 212 1 182 1.22e-11 67.0
MS.gene63256.t1 AT3G59200 30.882 204 111 11 22 212 7 193 1.76e-11 66.6
MS.gene63256.t1 AT4G00315 31.683 202 116 10 21 214 1 188 2.07e-11 66.2
MS.gene63256.t1 AT5G22700 30.579 242 141 9 22 258 43 262 3.15e-11 65.5
MS.gene63256.t1 AT5G56810 25.163 461 277 15 22 458 15 431 3.69e-11 65.5
MS.gene63256.t1 AT5G22700 30.579 242 141 9 22 258 6 225 4.02e-11 65.5
MS.gene63256.t1 AT5G22700 30.579 242 141 9 22 258 6 225 4.02e-11 65.5
MS.gene63256.t1 AT5G22700 30.579 242 141 9 22 258 6 225 4.02e-11 65.5
MS.gene63256.t1 AT5G22700 30.579 242 141 9 22 258 6 225 4.02e-11 65.5
MS.gene63256.t1 AT5G22700 30.579 242 141 9 22 258 43 262 4.14e-11 65.5
MS.gene63256.t1 AT5G53840 25.581 430 262 18 22 431 18 409 5.74e-11 64.7
MS.gene63256.t1 AT5G41840 26.471 272 144 11 22 257 14 265 6.30e-11 65.1
MS.gene63256.t1 AT1G55660 30.000 200 120 8 20 212 51 237 6.34e-11 64.3
MS.gene63256.t1 AT1G55660 30.000 200 120 8 20 212 51 237 6.45e-11 64.7
MS.gene63256.t1 AT3G58940 28.111 217 115 10 21 214 1 199 6.53e-11 65.1
MS.gene63256.t1 AT3G58940 28.111 217 115 10 21 214 1 199 6.53e-11 65.1

Find 97 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCAGGCTGGAGACTTTGC+AGG 0.207215 8.4:+42590970 MS.gene63256:CDS
CGTTGGTAACTTTCGTAATA+TGG 0.215623 8.4:+42591141 MS.gene63256:CDS
TTTGCGGAACGGACTTGTTT+TGG 0.289001 8.4:+42591819 MS.gene63256:CDS
CAACTTTATCTCAATGTTGA+TGG 0.302931 8.4:+42590620 MS.gene63256:CDS
TGATGTAAATCGCGAAATTC+AGG 0.303964 8.4:-42591440 None:intergenic
GACCCAGATGTTTCTTCTTA+AGG 0.312024 8.4:+42591952 MS.gene63256:CDS
GAAATTCACTTCTGGTATCT+TGG 0.314508 8.4:-42591231 None:intergenic
TCATCTCTGGAAGGATCTTC+AGG 0.350215 8.4:+42590388 MS.gene63256:CDS
ATGTTTCAACTCAAATCTTC+TGG 0.358687 8.4:+42591481 MS.gene63256:CDS
TTCTAATACCGCAGTCTTCA+CGG 0.370164 8.4:+42590821 MS.gene63256:intron
TCTCGCTGGCTGCCCCAGGC+TGG 0.373730 8.4:+42590958 MS.gene63256:CDS
GCTTGTATGAAATTCACTTC+TGG 0.382431 8.4:-42591239 None:intergenic
TTACTAATGACGAAACTGTT+TGG 0.383755 8.4:-42590445 None:intergenic
TTACCTTAAGAAGAAACATC+TGG 0.399392 8.4:-42591955 None:intergenic
TTTGAATGTCGCGGGATTTG+CGG 0.402806 8.4:-42590484 None:intergenic
AAGCCTCATAATTAACTTTG+AGG 0.408476 8.4:+42591258 MS.gene63256:CDS
CTTGGATGAGGTTGAGAATA+GGG 0.417120 8.4:-42591213 None:intergenic
CATCCTCAAAGTTAATTATG+AGG 0.419080 8.4:-42591261 None:intergenic
ATATCCTTCTATGTGAATAT+AGG 0.424387 8.4:-42591758 None:intergenic
TGGGGAGGAAGGACATGATA+TGG 0.433088 8.4:-42590316 None:intergenic
CTGACCTATATTCACATAGA+AGG 0.433553 8.4:+42591754 MS.gene63256:CDS
CTTCAGTGATGGAAAATAAA+CGG 0.436856 8.4:-42590885 None:intergenic
TCTTTCTCGCTGGCTGCCCC+AGG 0.439455 8.4:+42590954 MS.gene63256:CDS
ACCTGCAAAGTCTCCAGCCT+GGG 0.440076 8.4:-42590971 None:intergenic
TCTTGGATGAGGTTGAGAAT+AGG 0.442368 8.4:-42591214 None:intergenic
CGGCAATGATATCGTGGATC+AGG 0.446705 8.4:+42590919 MS.gene63256:CDS
CTCGCAGGTATCTTCATCTC+TGG 0.455203 8.4:+42590375 MS.gene63256:CDS
CATCTGGGTCAAATTTAAGT+TGG 0.462482 8.4:-42591939 None:intergenic
AATTCAGGATAATTTAGAAC+AGG 0.463615 8.4:-42591425 None:intergenic
GAGATAAAGTTGTTGAAGGT+GGG 0.465366 8.4:-42590609 None:intergenic
CACTTCTGGTATCTTGGATG+AGG 0.469527 8.4:-42591225 None:intergenic
GCCTTTGATCGCCTTCAAAA+CGG 0.470214 8.4:+42590524 MS.gene63256:CDS
CCGCTCAACCTGTCGATGAC+AGG 0.475924 8.4:-42590272 None:intergenic
GGAAGGTGTCACTAGAACTT+TGG 0.483436 8.4:-42591032 None:intergenic
TGAGATAAAGTTGTTGAAGG+TGG 0.491370 8.4:-42590610 None:intergenic
CATTGAGATAAAGTTGTTGA+AGG 0.494116 8.4:-42590613 None:intergenic
CTTCTATGTGAATATAGGTC+AGG 0.500493 8.4:-42591753 None:intergenic
GCACCAACCTCGTTTCCCTC+AGG 0.500754 8.4:+42590678 MS.gene63256:CDS
ACATGTCGTCATCGGAAGAA+AGG 0.508920 8.4:-42591003 None:intergenic
AGTTACTTTAATATAAATGA+AGG 0.511759 8.4:+42591100 MS.gene63256:CDS
TCCGGCTGCCATGTTCTCAA+TGG 0.513864 8.4:-42591697 None:intergenic
TTGTTGAAGGTGGGGTCCAA+TGG 0.515637 8.4:-42590600 None:intergenic
ATTCACATAGAAGGATATCA+AGG 0.519668 8.4:+42591763 MS.gene63256:CDS
CGACAGGTTGAGCGGTCTAC+CGG 0.520637 8.4:+42590280 MS.gene63256:CDS
ATTTATATTAAAGTAACTCC+AGG 0.524406 8.4:-42591095 None:intergenic
GGATATCAAGCTGTTGGAGC+TGG 0.525635 8.4:-42591056 None:intergenic
TCTACAAATTGACTTTCAGC+CGG 0.526713 8.4:-42591190 None:intergenic
CTACAAATTGACTTTCAGCC+GGG 0.527011 8.4:-42591189 None:intergenic
GCGTGGATACTTGCTGCCAT+TGG 0.529491 8.4:+42590584 MS.gene63256:CDS
AAGATTAACAAATGTATCGA+AGG 0.530416 8.4:+42591903 MS.gene63256:CDS
AACCTGCAAAGTCTCCAGCC+TGG 0.539126 8.4:-42590972 None:intergenic
CCTCAATGGCGGAGGAGTCA+AGG 0.540811 8.4:+42590213 None:intergenic
CGATGAGCCTTGTCTCTCGC+AGG 0.545430 8.4:+42590360 MS.gene63256:CDS
TTTAGAACAGGTGCATGAGT+TGG 0.547228 8.4:-42591413 None:intergenic
CGCTCAACCTGTCGATGACA+GGG 0.547930 8.4:-42590271 None:intergenic
AACAACCACCATTGAGAACA+TGG 0.552420 8.4:+42591689 MS.gene63256:CDS
TACCTTAAGAAGAAACATCT+GGG 0.558902 8.4:-42591954 None:intergenic
CTGAATCACCTCAATGGCGG+AGG 0.559254 8.4:+42590205 None:intergenic
AGATAAAGTTGTTGAAGGTG+GGG 0.559902 8.4:-42590608 None:intergenic
ACCATTGAGAACATGGCAGC+CGG 0.564288 8.4:+42591696 MS.gene63256:CDS
CCGCCGATGACAATTTCACC+TGG 0.564468 8.4:+42591077 MS.gene63256:CDS
ATATGGCATAACAACGAGTC+CGG 0.568277 8.4:-42590299 None:intergenic
AAGCTGTTGGAGCTGGAGGA+AGG 0.568970 8.4:-42591049 None:intergenic
AATATGACCCTGTCATCGAC+AGG 0.572557 8.4:+42590264 MS.gene63256:CDS
GAATGTCGCGGGATTTGCGG+AGG 0.575959 8.4:-42590481 None:intergenic
GGTCAAAGACATGTCGTCAT+CGG 0.576120 8.4:-42591011 None:intergenic
GGCTGCCATGTTCTCAATGG+TGG 0.577603 8.4:-42591694 None:intergenic
CTATGTGAATATAGGTCAGG+TGG 0.580589 8.4:-42591750 None:intergenic
ATCGGCGGATATCAAGCTGT+TGG 0.583411 8.4:-42591062 None:intergenic
TGTGGCATTGCTCAAGACAA+TGG 0.586966 8.4:-42591505 None:intergenic
AGAAGATTTGAGTTGAAACA+TGG 0.586977 8.4:-42591479 None:intergenic
AGAGACAACATCTTCAGTGA+TGG 0.590452 8.4:-42590896 None:intergenic
TGGTAACTTTCGTAATATGG+TGG 0.590805 8.4:+42591144 MS.gene63256:CDS
TCAGAAACTCTTGTTGACTC+CGG 0.591556 8.4:-42591715 None:intergenic
GTCTCTCGGCAATGATATCG+TGG 0.594692 8.4:+42590913 MS.gene63256:CDS
AACTCAAGAATGCTAAAGCG+TGG 0.596870 8.4:+42590567 MS.gene63256:CDS
TATCAAGCTGTTGGAGCTGG+AGG 0.599693 8.4:-42591053 None:intergenic
GATTTGAGTTGAAACATGGA+AGG 0.600986 8.4:-42591475 None:intergenic
TCACTGAAGATGTTGTCTCT+CGG 0.609046 8.4:+42590899 MS.gene63256:CDS
AAGGCTCATCGTAGTAGTAA+CGG 0.612007 8.4:-42590348 None:intergenic
CAGGTATCTTCATCTCTGGA+AGG 0.616499 8.4:+42590379 MS.gene63256:CDS
GTTGCATCATTCGATGTCAA+AGG 0.618438 8.4:+42591294 MS.gene63256:CDS
AATGACGAAACTGTTTGGAA+CGG 0.618639 8.4:-42590440 None:intergenic
TTACCTGAGGGAAACGAGGT+TGG 0.622908 8.4:-42590681 None:intergenic
AGATTAACAAATGTATCGAA+GGG 0.622978 8.4:+42591904 MS.gene63256:CDS
ACTCCAGGTGAAATTGTCAT+CGG 0.626403 8.4:-42591080 None:intergenic
GATCAAAGGCGAAAGTGAGA+TGG 0.632265 8.4:-42590511 None:intergenic
GAAGATACCTGCGAGAGACA+AGG 0.633083 8.4:-42590367 None:intergenic
CCTGTCATCGACAGGTTGAG+CGG 0.637347 8.4:+42590272 MS.gene63256:CDS
CAATTGATAAAGAGTGAACG+AGG 0.640528 8.4:-42590656 None:intergenic
TCTCATAATTCAGAGCAACA+AGG 0.643040 8.4:+42591538 MS.gene63256:CDS
TATGTGAATATAGGTCAGGT+GGG 0.652099 8.4:-42591749 None:intergenic
CCAGGTGAAATTGTCATCGG+CGG 0.657457 8.4:-42591077 None:intergenic
CCTGCAAAGTCTCCAGCCTG+GGG 0.668022 8.4:-42590970 None:intergenic
TTATGAGAACTTGAAGCATG+TGG 0.695487 8.4:-42591523 None:intergenic
GAAGTTACCTGAGGGAAACG+AGG 0.701057 8.4:-42590685 None:intergenic
AATTGATAAAGAGTGAACGA+GGG 0.746792 8.4:-42590655 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATTTGTGTACAAA+TGG - chr8.4:42591631-42591650 None:intergenic 15.0%
!!! AGTTACTTTAATATAAATGA+AGG + chr8.4:42591100-42591119 MS.gene63256:CDS 15.0%
!! ATTTATATTAAAGTAACTCC+AGG - chr8.4:42591098-42591117 None:intergenic 20.0%
!!! ACAAATATATTTTTGAGTCA+CGG + chr8.4:42591638-42591657 MS.gene63256:intron 20.0%
!!! ATGTTTTTAAATGTGTAGTT+TGG + chr8.4:42591341-42591360 MS.gene63256:intron 20.0%
!!! ATTTTTTGATGTTTTTTTCC+CGG + chr8.4:42591171-42591190 MS.gene63256:CDS 20.0%
!!! TAATTCAAACATTCTTTTGT+CGG + chr8.4:42591580-42591599 MS.gene63256:intron 20.0%
!!! TGTTTTTGTTGATATTTCAA+TGG + chr8.4:42591852-42591871 MS.gene63256:CDS 20.0%
!!! TTGTTAATCTTTTGATAGAA+CGG - chr8.4:42591894-42591913 None:intergenic 20.0%
! AAGATTAACAAATGTATCGA+AGG + chr8.4:42591903-42591922 MS.gene63256:CDS 25.0%
! AGATTAACAAATGTATCGAA+GGG + chr8.4:42591904-42591923 MS.gene63256:CDS 25.0%
! ATATCCTTCTATGTGAATAT+AGG - chr8.4:42591761-42591780 None:intergenic 25.0%
!! AATTCAGGATAATTTAGAAC+AGG - chr8.4:42591428-42591447 None:intergenic 25.0%
!!! AAATGAAGGACGTTTTAAAT+TGG + chr8.4:42591114-42591133 MS.gene63256:CDS 25.0%
!!! AAGGTGAAGTTTTACTTTTA+TGG + chr8.4:42591313-42591332 MS.gene63256:intron 25.0%
!!! AATGAAGGACGTTTTAAATT+GGG + chr8.4:42591115-42591134 MS.gene63256:CDS 25.0%
!!! CATTTGCTGAATATATTTTG+CGG + chr8.4:42591803-42591822 MS.gene63256:CDS 25.0%
AAGCCTCATAATTAACTTTG+AGG + chr8.4:42591258-42591277 MS.gene63256:CDS 30.0%
AATTGATAAAGAGTGAACGA+GGG - chr8.4:42590658-42590677 None:intergenic 30.0%
ATGTTTCAACTCAAATCTTC+TGG + chr8.4:42591481-42591500 MS.gene63256:CDS 30.0%
ATTCACATAGAAGGATATCA+AGG + chr8.4:42591763-42591782 MS.gene63256:CDS 30.0%
CAACTTTATCTCAATGTTGA+TGG + chr8.4:42590620-42590639 MS.gene63256:CDS 30.0%
CATCCTCAAAGTTAATTATG+AGG - chr8.4:42591264-42591283 None:intergenic 30.0%
CATTGAGATAAAGTTGTTGA+AGG - chr8.4:42590616-42590635 None:intergenic 30.0%
TAAAAACAGAAGTTACCTGA+GGG - chr8.4:42590696-42590715 None:intergenic 30.0%
TTAAAAACAGAAGTTACCTG+AGG - chr8.4:42590697-42590716 None:intergenic 30.0%
TTACTAATGACGAAACTGTT+TGG - chr8.4:42590448-42590467 None:intergenic 30.0%
TTCAAAAGTGAAAGTGAGTT+TGG - chr8.4:42590792-42590811 None:intergenic 30.0%
! CTTCAGTGATGGAAAATAAA+CGG - chr8.4:42590888-42590907 None:intergenic 30.0%
! TTTTAATCCCATCTAATTGC+AGG + chr8.4:42590723-42590742 MS.gene63256:intron 30.0%
!! AGAAGATTTGAGTTGAAACA+TGG - chr8.4:42591482-42591501 None:intergenic 30.0%
AATGACGAAACTGTTTGGAA+CGG - chr8.4:42590443-42590462 None:intergenic 35.0%
AGATAAAGTTGTTGAAGGTG+GGG - chr8.4:42590611-42590630 None:intergenic 35.0%
ATGAGTATCCTGCAATTAGA+TGG - chr8.4:42590734-42590753 None:intergenic 35.0%
CAATTGATAAAGAGTGAACG+AGG - chr8.4:42590659-42590678 None:intergenic 35.0%
CATCTGGGTCAAATTTAAGT+TGG - chr8.4:42591942-42591961 None:intergenic 35.0%
CTGACCTATATTCACATAGA+AGG + chr8.4:42591754-42591773 MS.gene63256:CDS 35.0%
CTTCTATGTGAATATAGGTC+AGG - chr8.4:42591756-42591775 None:intergenic 35.0%
GAAATTCACTTCTGGTATCT+TGG - chr8.4:42591234-42591253 None:intergenic 35.0%
GAGATAAAGTTGTTGAAGGT+GGG - chr8.4:42590612-42590631 None:intergenic 35.0%
GCTTGTATGAAATTCACTTC+TGG - chr8.4:42591242-42591261 None:intergenic 35.0%
TATGTGAATATAGGTCAGGT+GGG - chr8.4:42591752-42591771 None:intergenic 35.0%
TCTCATAATTCAGAGCAACA+AGG + chr8.4:42591538-42591557 MS.gene63256:CDS 35.0%
TGAGATAAAGTTGTTGAAGG+TGG - chr8.4:42590613-42590632 None:intergenic 35.0%
TGAGTATCCTGCAATTAGAT+GGG - chr8.4:42590733-42590752 None:intergenic 35.0%
TGATGTAAATCGCGAAATTC+AGG - chr8.4:42591443-42591462 None:intergenic 35.0%
TGGTAACTTTCGTAATATGG+TGG + chr8.4:42591144-42591163 MS.gene63256:CDS 35.0%
TTATGAGAACTTGAAGCATG+TGG - chr8.4:42591526-42591545 None:intergenic 35.0%
! GCTGAATATATTTTGCGGAA+CGG + chr8.4:42591808-42591827 MS.gene63256:CDS 35.0%
! TCTACAAATTGACTTTCAGC+CGG - chr8.4:42591193-42591212 None:intergenic 35.0%
!! AGTAGTAACGGAAGTTTTTG+TGG - chr8.4:42590339-42590358 None:intergenic 35.0%
!! CGTTGGTAACTTTCGTAATA+TGG + chr8.4:42591141-42591160 MS.gene63256:CDS 35.0%
!! GATTTGAGTTGAAACATGGA+AGG - chr8.4:42591478-42591497 None:intergenic 35.0%
!! GTAGTAACGGAAGTTTTTGT+GGG - chr8.4:42590338-42590357 None:intergenic 35.0%
!! TAGTAACGGAAGTTTTTGTG+GGG - chr8.4:42590337-42590356 None:intergenic 35.0%
!!! TATATTTTTGAGTCACGGCT+TGG + chr8.4:42591643-42591662 MS.gene63256:intron 35.0%
AACAACCACCATTGAGAACA+TGG + chr8.4:42591689-42591708 MS.gene63256:CDS 40.0%
AACTCAAGAATGCTAAAGCG+TGG + chr8.4:42590567-42590586 MS.gene63256:CDS 40.0%
AAGGCTCATCGTAGTAGTAA+CGG - chr8.4:42590351-42590370 None:intergenic 40.0%
ACTCCAGGTGAAATTGTCAT+CGG - chr8.4:42591083-42591102 None:intergenic 40.0%
AGAGACAACATCTTCAGTGA+TGG - chr8.4:42590899-42590918 None:intergenic 40.0%
ATATGGCATAACAACGAGTC+CGG - chr8.4:42590302-42590321 None:intergenic 40.0%
CTATGTGAATATAGGTCAGG+TGG - chr8.4:42591753-42591772 None:intergenic 40.0%
CTTGGATGAGGTTGAGAATA+GGG - chr8.4:42591216-42591235 None:intergenic 40.0%
GTTGCATCATTCGATGTCAA+AGG + chr8.4:42591294-42591313 MS.gene63256:CDS 40.0%
TCACTGAAGATGTTGTCTCT+CGG + chr8.4:42590899-42590918 MS.gene63256:CDS 40.0%
TCTTGGATGAGGTTGAGAAT+AGG - chr8.4:42591217-42591236 None:intergenic 40.0%
TTCAGAGCAACAAGGTTTGT+TGG + chr8.4:42591546-42591565 MS.gene63256:intron 40.0%
TTCTAATACCGCAGTCTTCA+CGG + chr8.4:42590821-42590840 MS.gene63256:intron 40.0%
TTGTTATCGTGTATGTGCAG+TGG + chr8.4:42591390-42591409 MS.gene63256:intron 40.0%
! CAAGAACACAACCGTTTTGA+AGG - chr8.4:42590538-42590557 None:intergenic 40.0%
! CTACAAATTGACTTTCAGCC+GGG - chr8.4:42591192-42591211 None:intergenic 40.0%
! TTTAGAACAGGTGCATGAGT+TGG - chr8.4:42591416-42591435 None:intergenic 40.0%
!! CGTTTTAAATTGGGCATCGT+TGG + chr8.4:42591124-42591143 MS.gene63256:CDS 40.0%
!! TCAGAAACTCTTGTTGACTC+CGG - chr8.4:42591718-42591737 None:intergenic 40.0%
!!! ATGGAAGTTTTGAATGTCGC+GGG - chr8.4:42590495-42590514 None:intergenic 40.0%
!!! GATGGAAGTTTTGAATGTCG+CGG - chr8.4:42590496-42590515 None:intergenic 40.0%
!!! GCATTAGTTTTCTTTCTCGC+TGG + chr8.4:42590944-42590963 MS.gene63256:CDS 40.0%
AATATGACCCTGTCATCGAC+AGG + chr8.4:42590264-42590283 MS.gene63256:CDS 45.0%
ACATGTCGTCATCGGAAGAA+AGG - chr8.4:42591006-42591025 None:intergenic 45.0%
CACTTCTGGTATCTTGGATG+AGG - chr8.4:42591228-42591247 None:intergenic 45.0%
CAGGTATCTTCATCTCTGGA+AGG + chr8.4:42590379-42590398 MS.gene63256:CDS 45.0%
GATCAAAGGCGAAAGTGAGA+TGG - chr8.4:42590514-42590533 None:intergenic 45.0%
GCCTTTGATCGCCTTCAAAA+CGG + chr8.4:42590524-42590543 MS.gene63256:CDS 45.0%
GGTCAAAGACATGTCGTCAT+CGG - chr8.4:42591014-42591033 None:intergenic 45.0%
GTTCCTCCTATGAGCAACAA+GGG - chr8.4:42591672-42591691 None:intergenic 45.0%
TGTGGCATTGCTCAAGACAA+TGG - chr8.4:42591508-42591527 None:intergenic 45.0%
TGTTCCTCCTATGAGCAACA+AGG - chr8.4:42591673-42591692 None:intergenic 45.0%
TTTGAATGTCGCGGGATTTG+CGG - chr8.4:42590487-42590506 None:intergenic 45.0%
! TAACGGAAGTTTTTGTGGGG+AGG - chr8.4:42590334-42590353 None:intergenic 45.0%
! TCATCTCTGGAAGGATCTTC+AGG + chr8.4:42590388-42590407 MS.gene63256:CDS 45.0%
!! GGAAGGTGTCACTAGAACTT+TGG - chr8.4:42591035-42591054 None:intergenic 45.0%
!! TTTGCGGAACGGACTTGTTT+TGG + chr8.4:42591819-42591838 MS.gene63256:CDS 45.0%
!!! ACCGTTTTGAAGGCGATCAA+AGG - chr8.4:42590528-42590547 None:intergenic 45.0%
ACCATTGAGAACATGGCAGC+CGG + chr8.4:42591696-42591715 MS.gene63256:CDS 50.0%
ATCGGCGGATATCAAGCTGT+TGG - chr8.4:42591065-42591084 None:intergenic 50.0%
CCAGGTGAAATTGTCATCGG+CGG - chr8.4:42591080-42591099 None:intergenic 50.0%
CGATTGAACCGTGAAGACTG+CGG - chr8.4:42590832-42590851 None:intergenic 50.0%
CGGCAATGATATCGTGGATC+AGG + chr8.4:42590919-42590938 MS.gene63256:CDS 50.0%
CTCGCAGGTATCTTCATCTC+TGG + chr8.4:42590375-42590394 MS.gene63256:CDS 50.0%
GAAGATACCTGCGAGAGACA+AGG - chr8.4:42590370-42590389 None:intergenic 50.0%
GAAGTTACCTGAGGGAAACG+AGG - chr8.4:42590688-42590707 None:intergenic 50.0%
GGATATCAAGCTGTTGGAGC+TGG - chr8.4:42591059-42591078 None:intergenic 50.0%
GTCTCTCGGCAATGATATCG+TGG + chr8.4:42590913-42590932 MS.gene63256:CDS 50.0%
TATCAAGCTGTTGGAGCTGG+AGG - chr8.4:42591056-42591075 None:intergenic 50.0%
TGGGGAGGAAGGACATGATA+TGG - chr8.4:42590319-42590338 None:intergenic 50.0%
TGGTGTCCCTTGTTGCTCAT+AGG + chr8.4:42591663-42591682 MS.gene63256:intron 50.0%
TGTCCCTTGTTGCTCATAGG+AGG + chr8.4:42591666-42591685 MS.gene63256:intron 50.0%
TTACCTGAGGGAAACGAGGT+TGG - chr8.4:42590684-42590703 None:intergenic 50.0%
TTGTTGAAGGTGGGGTCCAA+TGG - chr8.4:42590603-42590622 None:intergenic 50.0%
! GGAAGTTTTTGTGGGGAGGA+AGG - chr8.4:42590330-42590349 None:intergenic 50.0%
AACCTGCAAAGTCTCCAGCC+TGG - chr8.4:42590975-42590994 None:intergenic 55.0%
AAGCTGTTGGAGCTGGAGGA+AGG - chr8.4:42591052-42591071 None:intergenic 55.0%
ACCTGCAAAGTCTCCAGCCT+GGG - chr8.4:42590974-42590993 None:intergenic 55.0%
CCGCCGATGACAATTTCACC+TGG + chr8.4:42591077-42591096 MS.gene63256:CDS 55.0%
CGCTCAACCTGTCGATGACA+GGG - chr8.4:42590274-42590293 None:intergenic 55.0%
GGCTGCCATGTTCTCAATGG+TGG - chr8.4:42591697-42591716 None:intergenic 55.0%
TCCGGCTGCCATGTTCTCAA+TGG - chr8.4:42591700-42591719 None:intergenic 55.0%
! CCTGTCATCGACAGGTTGAG+CGG + chr8.4:42590272-42590291 MS.gene63256:CDS 55.0%
! GCGTGGATACTTGCTGCCAT+TGG + chr8.4:42590584-42590603 MS.gene63256:CDS 55.0%
CCGCTCAACCTGTCGATGAC+AGG - chr8.4:42590275-42590294 None:intergenic 60.0%
CCTGCAAAGTCTCCAGCCTG+GGG - chr8.4:42590973-42590992 None:intergenic 60.0%
GAATGTCGCGGGATTTGCGG+AGG - chr8.4:42590484-42590503 None:intergenic 60.0%
GCACCAACCTCGTTTCCCTC+AGG + chr8.4:42590678-42590697 MS.gene63256:CDS 60.0%
! CGACAGGTTGAGCGGTCTAC+CGG + chr8.4:42590280-42590299 MS.gene63256:CDS 60.0%
! CGATGAGCCTTGTCTCTCGC+AGG + chr8.4:42590360-42590379 MS.gene63256:CDS 60.0%
CCCCAGGCTGGAGACTTTGC+AGG + chr8.4:42590970-42590989 MS.gene63256:CDS 65.0%
! TCTTTCTCGCTGGCTGCCCC+AGG + chr8.4:42590954-42590973 MS.gene63256:CDS 65.0%
! TCTCGCTGGCTGCCCCAGGC+TGG + chr8.4:42590958-42590977 MS.gene63256:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 42590218 42591972 42590218 ID=MS.gene63256
chr8.4 mRNA 42590218 42591972 42590218 ID=MS.gene63256.t1;Parent=MS.gene63256
chr8.4 exon 42590218 42590699 42590218 ID=MS.gene63256.t1.exon1;Parent=MS.gene63256.t1
chr8.4 CDS 42590218 42590699 42590218 ID=cds.MS.gene63256.t1;Parent=MS.gene63256.t1
chr8.4 exon 42590835 42591315 42590835 ID=MS.gene63256.t1.exon2;Parent=MS.gene63256.t1
chr8.4 CDS 42590835 42591315 42590835 ID=cds.MS.gene63256.t1;Parent=MS.gene63256.t1
chr8.4 exon 42591410 42591559 42591410 ID=MS.gene63256.t1.exon3;Parent=MS.gene63256.t1
chr8.4 CDS 42591410 42591559 42591410 ID=cds.MS.gene63256.t1;Parent=MS.gene63256.t1
chr8.4 exon 42591685 42591972 42591685 ID=MS.gene63256.t1.exon4;Parent=MS.gene63256.t1
chr8.4 CDS 42591685 42591972 42591685 ID=cds.MS.gene63256.t1;Parent=MS.gene63256.t1
Gene Sequence

>MS.gene63256

ATGGCGGAGGAGTCAAGGATGATGAAACGACTGAAAGCACAAGAAGAATATGACCCTGTCATCGACAGGTTGAGCGGTCTACCGGACTCGTTGTTATGCCATATCATGTCCTTCCTCCCCACAAAAACTTCCGTTACTACTACGATGAGCCTTGTCTCTCGCAGGTATCTTCATCTCTGGAAGGATCTTCAGGTCTTGTATTTCGACTTTCACGACTCAATTCCGTTCCAAACAGTTTCGTCATTAGTAAACTCTGTTCTCGTCCTCCGCAAATCCCGCGACATTCAAAACTTCCATCTCACTTTCGCCTTTGATCGCCTTCAAAACGGTTGTGTTCTTGAAAAGTTACAACTCAAGAATGCTAAAGCGTGGATACTTGCTGCCATTGGACCCCACCTTCAACAACTTTATCTCAATGTTGATGGTTGTATAGATATCCCTCGTTCACTCTTTATCAATTGCACCAACCTCGTTTCCCTCAGGTAACTTCTGTTTTTAAATTAATTTTTAATCCCATCTAATTGCAGGATACTCATGTTTTAATGATAACTCAAGTGATTTGTTTTTATGTCCAAACTCACTTTCACTTTTGAATCATACTTTTTCTAATACCGCAGTCTTCACGGTTCAATCGAAACTATGCACTGCAATATTAACAGTGCAAATTCCGTTTATTTTCCATCACTGAAGATGTTGTCTCTCGGCAATGATATCGTGGATCAGGAAGCATTAGTTTTCTTTCTCGCTGGCTGCCCCAGGCTGGAGACTTTGCAGGTTTACGTTTACCTTTCTTCCGATGACGACATGTCTTTGACCAAAGTTCTAGTGACACCTTCCTCCAGCTCCAACAGCTTGATATCCGCCGATGACAATTTCACCTGGAGTTACTTTAATATAAATGAAGGACGTTTTAAATTGGGCATCGTTGGTAACTTTCGTAATATGGTGGAAGCATTTTTTGATGTTTTTTTCCCGGCTGAAAGTCAATTTGTAGACCCTATTCTCAACCTCATCCAAGATACCAGAAGTGAATTTCATACAAGCCTCATAATTAACTTTGAGGATGTTTATCTACAGTTGCATCATTCGATGTCAAAGGTGAAGTTTTACTTTTATGGTTTACATGTTTTTAAATGTGTAGTTTGGTTCTAATATTGCGTCGTCATCACTTGTTGTTATCGTGTATGTGCAGTGGCCAACTCATGCACCTGTTCTAAATTATCCTGAATTTCGCGATTTACATCATTTGAAGTTCATCCTTCCATGTTTCAACTCAAATCTTCTGGTCCATTGTCTTGAGCAATGCCACATGCTTCAAGTTCTCATAATTCAGAGCAACAAGGTTTGTTGGATTTTCAAATTTAATTCAAACATTCTTTTGTCGGTCTATATATACATGCATGTATGTCTCCATTTGTACACAAATATATTTTTGAGTCACGGCTTGGTGTCCCTTGTTGCTCATAGGAGGAACAACCACCATTGAGAACATGGCAGCCGGAGTCAACAAGAGTTTCTGAATGTCTCAAGTCCCACCTGACCTATATTCACATAGAAGGATATCAAGGACTTAAAGATGAGCTGACATTTGCTGAATATATTTTGCGGAACGGACTTGTTTTGGAGACAATGCTTGTTTTTGTTGATATTTCAATGGACATAACAAACAAGTACCGTTCTATCAAAAGATTAACAAATGTATCGAAGGGCTCTGTCAGATGCCAACTTAAATTTGACCCAGATGTTTCTTCTTAA

Protein sequence

>MS.gene63256.t1

MAEESRMMKRLKAQEEYDPVIDRLSGLPDSLLCHIMSFLPTKTSVTTTMSLVSRRYLHLWKDLQVLYFDFHDSIPFQTVSSLVNSVLVLRKSRDIQNFHLTFAFDRLQNGCVLEKLQLKNAKAWILAAIGPHLQQLYLNVDGCIDIPRSLFINCTNLVSLSLHGSIETMHCNINSANSVYFPSLKMLSLGNDIVDQEALVFFLAGCPRLETLQVYVYLSSDDDMSLTKVLVTPSSSSNSLISADDNFTWSYFNINEGRFKLGIVGNFRNMVEAFFDVFFPAESQFVDPILNLIQDTRSEFHTSLIINFEDVYLQLHHSMSKWPTHAPVLNYPEFRDLHHLKFILPCFNSNLLVHCLEQCHMLQVLIIQSNKEEQPPLRTWQPESTRVSECLKSHLTYIHIEGYQGLKDELTFAEYILRNGLVLETMLVFVDISMDITNKYRSIKRLTNVSKGSVRCQLKFDPDVSS