Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99982.t1 | XP_003628587.2 | 92.9 | 453 | 32 | 0 | 1 | 453 | 464 | 916 | 2.70E-243 | 850.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99982.t1 | Q9ZV93 | 25.0 | 460 | 293 | 18 | 21 | 445 | 13 | 455 | 6.3e-15 | 83.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99982.t1 | G7LEM0 | 87.3 | 482 | 32 | 2 | 1 | 453 | 1 | 482 | 1.6e-237 | 831.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99982.t1 | MTR_8g062300 | 87.344 | 482 | 32 | 2 | 1 | 453 | 1 | 482 | 0.0 | 845 |
MS.gene99982.t1 | MTR_8g070950 | 58.351 | 461 | 160 | 9 | 1 | 452 | 1 | 438 | 8.56e-165 | 472 |
MS.gene99982.t1 | MTR_8g062010 | 59.540 | 435 | 159 | 9 | 26 | 452 | 9 | 434 | 1.77e-161 | 463 |
MS.gene99982.t1 | MTR_8g062080 | 54.329 | 462 | 183 | 9 | 5 | 453 | 4 | 450 | 5.67e-159 | 457 |
MS.gene99982.t1 | MTR_8g062310 | 56.064 | 437 | 173 | 8 | 16 | 452 | 15 | 432 | 3.28e-155 | 447 |
MS.gene99982.t1 | MTR_8g058965 | 50.743 | 471 | 191 | 8 | 13 | 453 | 2 | 461 | 1.70e-144 | 421 |
MS.gene99982.t1 | MTR_8g469020 | 50.545 | 459 | 185 | 10 | 26 | 452 | 7 | 455 | 3.94e-139 | 407 |
MS.gene99982.t1 | MTR_4g050250 | 49.420 | 431 | 164 | 14 | 7 | 394 | 1 | 420 | 1.12e-113 | 341 |
MS.gene99982.t1 | MTR_8g467790 | 48.187 | 386 | 145 | 8 | 25 | 393 | 147 | 494 | 1.48e-101 | 313 |
MS.gene99982.t1 | MTR_2g083840 | 39.362 | 470 | 240 | 15 | 5 | 448 | 7 | 457 | 1.11e-81 | 259 |
MS.gene99982.t1 | MTR_8g058970 | 38.557 | 485 | 247 | 17 | 7 | 448 | 1 | 477 | 2.70e-78 | 251 |
MS.gene99982.t1 | MTR_8g062270 | 39.520 | 458 | 227 | 18 | 23 | 447 | 13 | 453 | 1.48e-77 | 249 |
MS.gene99982.t1 | MTR_8g468810 | 39.076 | 476 | 249 | 16 | 1 | 448 | 1 | 463 | 1.97e-77 | 249 |
MS.gene99982.t1 | MTR_2g086020 | 80.282 | 142 | 28 | 0 | 311 | 452 | 178 | 319 | 2.18e-73 | 234 |
MS.gene99982.t1 | MTR_2g086020 | 58.904 | 146 | 55 | 4 | 52 | 196 | 1 | 142 | 9.87e-41 | 148 |
MS.gene99982.t1 | MTR_8g014260 | 37.500 | 472 | 250 | 17 | 1 | 448 | 1 | 451 | 7.94e-72 | 234 |
MS.gene99982.t1 | MTR_8g467800 | 37.500 | 472 | 252 | 14 | 1 | 448 | 1 | 453 | 5.66e-68 | 224 |
MS.gene99982.t1 | MTR_5g092960 | 35.256 | 468 | 259 | 11 | 11 | 447 | 7 | 461 | 8.77e-68 | 223 |
MS.gene99982.t1 | MTR_4g032730 | 35.010 | 477 | 253 | 13 | 15 | 447 | 3 | 466 | 9.35e-67 | 221 |
MS.gene99982.t1 | MTR_8g468760 | 35.853 | 463 | 221 | 16 | 15 | 447 | 2 | 418 | 6.04e-64 | 212 |
MS.gene99982.t1 | MTR_8g468840 | 35.857 | 449 | 246 | 13 | 26 | 446 | 14 | 448 | 7.89e-64 | 213 |
MS.gene99982.t1 | MTR_8g445780 | 37.592 | 407 | 218 | 17 | 13 | 401 | 2 | 390 | 1.19e-55 | 190 |
MS.gene99982.t1 | MTR_8g468810 | 39.062 | 384 | 195 | 15 | 1 | 358 | 1 | 371 | 6.78e-54 | 184 |
MS.gene99982.t1 | MTR_5g092960 | 34.933 | 375 | 207 | 9 | 11 | 358 | 7 | 371 | 5.52e-46 | 164 |
MS.gene99982.t1 | MTR_8g077460 | 32.739 | 449 | 207 | 18 | 19 | 448 | 3 | 375 | 3.86e-45 | 161 |
MS.gene99982.t1 | MTR_8g468810 | 39.935 | 308 | 152 | 12 | 1 | 288 | 1 | 295 | 2.33e-44 | 158 |
MS.gene99982.t1 | MTR_8g468810 | 40.065 | 307 | 153 | 12 | 1 | 288 | 1 | 295 | 3.34e-44 | 157 |
MS.gene99982.t1 | MTR_8g468810 | 38.906 | 329 | 170 | 12 | 1 | 310 | 1 | 317 | 5.69e-44 | 157 |
MS.gene99982.t1 | MTR_8g014160 | 31.614 | 446 | 221 | 15 | 26 | 448 | 41 | 425 | 1.27e-41 | 153 |
MS.gene99982.t1 | MTR_8g467800 | 37.003 | 327 | 173 | 11 | 1 | 310 | 1 | 311 | 1.47e-34 | 132 |
MS.gene99982.t1 | MTR_3g099800 | 67.816 | 87 | 27 | 1 | 360 | 445 | 19 | 105 | 2.70e-31 | 116 |
MS.gene99982.t1 | MTR_4g024710 | 34.007 | 297 | 174 | 11 | 167 | 448 | 58 | 347 | 5.73e-31 | 122 |
MS.gene99982.t1 | MTR_8g014210 | 40.323 | 186 | 106 | 5 | 264 | 448 | 50 | 231 | 4.64e-27 | 108 |
MS.gene99982.t1 | MTR_7g098510 | 25.917 | 436 | 256 | 11 | 22 | 448 | 14 | 391 | 1.17e-24 | 105 |
MS.gene99982.t1 | MTR_1g041245 | 29.519 | 437 | 235 | 16 | 25 | 448 | 10 | 386 | 2.03e-24 | 104 |
MS.gene99982.t1 | MTR_3g107100 | 28.953 | 449 | 244 | 19 | 20 | 448 | 5 | 398 | 2.10e-24 | 105 |
MS.gene99982.t1 | MTR_5g084070 | 27.907 | 430 | 274 | 16 | 25 | 440 | 12 | 419 | 7.95e-24 | 103 |
MS.gene99982.t1 | MTR_7g056433 | 28.111 | 434 | 245 | 17 | 26 | 448 | 12 | 389 | 2.53e-23 | 101 |
MS.gene99982.t1 | MTR_3g108150 | 28.009 | 432 | 243 | 15 | 26 | 447 | 13 | 386 | 2.00e-21 | 95.9 |
MS.gene99982.t1 | MTR_5g080710 | 27.546 | 432 | 280 | 15 | 25 | 440 | 32 | 446 | 3.32e-21 | 96.3 |
MS.gene99982.t1 | MTR_4g024745 | 32.394 | 284 | 166 | 11 | 165 | 431 | 10 | 284 | 5.62e-21 | 93.2 |
MS.gene99982.t1 | MTR_2g007450 | 27.434 | 452 | 252 | 20 | 23 | 445 | 13 | 417 | 8.89e-21 | 94.7 |
MS.gene99982.t1 | MTR_1089s0010 | 25.508 | 443 | 249 | 19 | 21 | 448 | 3 | 379 | 2.12e-20 | 92.8 |
MS.gene99982.t1 | MTR_3g107160 | 26.877 | 413 | 223 | 16 | 21 | 415 | 5 | 356 | 4.52e-20 | 92.0 |
MS.gene99982.t1 | MTR_5g021550 | 42.308 | 156 | 75 | 8 | 20 | 166 | 13 | 162 | 2.13e-19 | 85.5 |
MS.gene99982.t1 | MTR_7g098480 | 27.064 | 436 | 247 | 14 | 22 | 447 | 14 | 388 | 4.42e-19 | 89.7 |
MS.gene99982.t1 | MTR_2g036470 | 26.562 | 448 | 261 | 19 | 14 | 447 | 2 | 395 | 2.01e-18 | 87.4 |
MS.gene99982.t1 | MTR_5g008950 | 24.424 | 434 | 246 | 16 | 28 | 448 | 1 | 365 | 4.55e-18 | 85.9 |
MS.gene99982.t1 | MTR_3g036250 | 26.879 | 439 | 222 | 21 | 26 | 445 | 5 | 363 | 9.54e-18 | 84.7 |
MS.gene99982.t1 | MTR_3g107120 | 27.119 | 413 | 221 | 17 | 26 | 415 | 9 | 364 | 9.63e-18 | 85.1 |
MS.gene99982.t1 | MTR_5g073420 | 25.424 | 413 | 216 | 16 | 25 | 419 | 10 | 348 | 9.66e-18 | 85.1 |
MS.gene99982.t1 | MTR_8g014290 | 38.217 | 157 | 76 | 8 | 26 | 167 | 10 | 160 | 2.24e-17 | 79.7 |
MS.gene99982.t1 | MTR_5g045170 | 25.799 | 438 | 257 | 16 | 28 | 453 | 16 | 397 | 2.43e-17 | 84.0 |
MS.gene99982.t1 | MTR_2g007400 | 25.499 | 451 | 251 | 17 | 25 | 448 | 11 | 403 | 1.54e-16 | 81.6 |
MS.gene99982.t1 | MTR_7g007080 | 27.483 | 433 | 241 | 18 | 26 | 445 | 4 | 376 | 1.84e-16 | 81.3 |
MS.gene99982.t1 | MTR_7g056447 | 31.707 | 205 | 121 | 8 | 26 | 224 | 9 | 200 | 2.24e-16 | 79.7 |
MS.gene99982.t1 | MTR_2g008320 | 25.287 | 435 | 256 | 14 | 25 | 448 | 51 | 427 | 4.25e-16 | 80.5 |
MS.gene99982.t1 | MTR_7g056420 | 25.761 | 427 | 231 | 15 | 26 | 442 | 9 | 359 | 6.81e-16 | 80.9 |
MS.gene99982.t1 | MTR_7g056430 | 25.761 | 427 | 231 | 15 | 26 | 442 | 9 | 359 | 6.86e-16 | 80.9 |
MS.gene99982.t1 | MTR_3g023630 | 26.941 | 438 | 239 | 21 | 23 | 448 | 5 | 373 | 8.58e-16 | 79.0 |
MS.gene99982.t1 | MTR_7g115270 | 25.346 | 434 | 264 | 15 | 26 | 445 | 12 | 399 | 1.17e-15 | 79.0 |
MS.gene99982.t1 | MTR_5g007410 | 24.764 | 424 | 267 | 12 | 28 | 445 | 28 | 405 | 1.36e-15 | 79.0 |
MS.gene99982.t1 | MTR_4g024720 | 39.437 | 142 | 66 | 8 | 1 | 136 | 1 | 128 | 2.48e-15 | 75.1 |
MS.gene99982.t1 | MTR_7g055943 | 25.664 | 452 | 245 | 21 | 22 | 448 | 36 | 421 | 6.47e-15 | 77.0 |
MS.gene99982.t1 | MTR_6g022360 | 24.057 | 424 | 253 | 14 | 2 | 419 | 19 | 379 | 6.75e-15 | 76.6 |
MS.gene99982.t1 | MTR_5g083890 | 25.115 | 434 | 256 | 16 | 26 | 435 | 6 | 394 | 7.00e-15 | 77.0 |
MS.gene99982.t1 | MTR_5g008920 | 24.485 | 437 | 255 | 19 | 23 | 448 | 9 | 381 | 9.15e-15 | 76.3 |
MS.gene99982.t1 | MTR_7g026500 | 24.330 | 448 | 246 | 16 | 26 | 447 | 14 | 394 | 6.49e-14 | 73.6 |
MS.gene99982.t1 | MTR_5g058000 | 25.747 | 435 | 244 | 19 | 25 | 447 | 7 | 374 | 1.43e-13 | 72.4 |
MS.gene99982.t1 | MTR_3g040700 | 24.938 | 401 | 219 | 15 | 26 | 414 | 43 | 373 | 3.12e-13 | 71.6 |
MS.gene99982.t1 | MTR_6g022500 | 25.060 | 415 | 228 | 19 | 19 | 415 | 94 | 443 | 9.56e-13 | 70.5 |
MS.gene99982.t1 | MTR_3g467400 | 30.288 | 208 | 120 | 9 | 26 | 217 | 3 | 201 | 9.87e-13 | 69.7 |
MS.gene99982.t1 | MTR_7g032380 | 30.457 | 197 | 119 | 7 | 25 | 216 | 10 | 193 | 1.05e-12 | 69.7 |
MS.gene99982.t1 | MTR_8g014230 | 39.286 | 84 | 49 | 2 | 358 | 441 | 17 | 98 | 1.22e-12 | 64.3 |
MS.gene99982.t1 | MTR_1g107385 | 26.398 | 447 | 244 | 17 | 26 | 445 | 32 | 420 | 2.21e-12 | 68.9 |
MS.gene99982.t1 | MTR_8g085430 | 31.863 | 204 | 114 | 9 | 25 | 216 | 10 | 200 | 2.23e-12 | 68.2 |
MS.gene99982.t1 | MTR_6g011460 | 24.824 | 427 | 229 | 17 | 12 | 417 | 32 | 387 | 2.53e-12 | 68.9 |
MS.gene99982.t1 | MTR_4g098590 | 26.190 | 420 | 236 | 19 | 28 | 427 | 1 | 366 | 4.22e-12 | 67.8 |
MS.gene99982.t1 | MTR_7g032370 | 33.577 | 137 | 83 | 3 | 319 | 448 | 217 | 352 | 1.08e-11 | 66.6 |
MS.gene99982.t1 | MTR_2g007500 | 30.732 | 205 | 107 | 8 | 21 | 216 | 9 | 187 | 2.52e-11 | 65.1 |
MS.gene99982.t1 | MTR_8g468910 | 31.443 | 194 | 111 | 8 | 7 | 191 | 29 | 209 | 3.03e-11 | 65.5 |
MS.gene99982.t1 | MTR_1g492880 | 40.698 | 86 | 49 | 2 | 26 | 110 | 6 | 90 | 3.28e-11 | 60.1 |
MS.gene99982.t1 | MTR_1g492880 | 38.889 | 90 | 53 | 2 | 22 | 110 | 2 | 90 | 4.14e-11 | 60.1 |
MS.gene99982.t1 | MTR_4g113810 | 35.537 | 121 | 67 | 5 | 107 | 221 | 3 | 118 | 4.51e-11 | 61.6 |
MS.gene99982.t1 | MTR_4g024770 | 48.611 | 72 | 27 | 2 | 1 | 72 | 8 | 69 | 9.01e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99982.t1 | AT5G56420 | 26.444 | 450 | 271 | 16 | 26 | 448 | 6 | 422 | 1.13e-19 | 91.3 |
MS.gene99982.t1 | AT5G56420 | 26.444 | 450 | 271 | 16 | 26 | 448 | 6 | 422 | 1.13e-19 | 91.3 |
MS.gene99982.t1 | AT5G56420 | 26.444 | 450 | 271 | 16 | 26 | 448 | 6 | 422 | 1.13e-19 | 91.3 |
MS.gene99982.t1 | AT1G78750 | 25.053 | 475 | 292 | 20 | 12 | 445 | 4 | 455 | 1.61e-18 | 88.2 |
MS.gene99982.t1 | AT1G78750 | 25.053 | 475 | 292 | 20 | 12 | 445 | 4 | 455 | 1.61e-18 | 88.2 |
MS.gene99982.t1 | AT5G56560 | 27.982 | 436 | 275 | 20 | 28 | 448 | 7 | 418 | 2.14e-17 | 84.3 |
MS.gene99982.t1 | AT4G26340 | 27.027 | 444 | 279 | 16 | 25 | 448 | 1 | 419 | 1.75e-16 | 81.6 |
MS.gene99982.t1 | AT1G66290 | 25.311 | 482 | 286 | 28 | 2 | 445 | 5 | 450 | 8.97e-16 | 79.7 |
MS.gene99982.t1 | AT3G50710 | 25.983 | 458 | 274 | 17 | 25 | 448 | 1 | 427 | 9.18e-16 | 79.3 |
MS.gene99982.t1 | AT1G69630 | 25.000 | 480 | 261 | 18 | 21 | 445 | 13 | 448 | 1.01e-15 | 79.3 |
MS.gene99982.t1 | AT5G56440 | 25.597 | 461 | 273 | 15 | 25 | 447 | 1 | 429 | 1.20e-15 | 79.3 |
MS.gene99982.t1 | AT5G60610 | 24.455 | 413 | 263 | 15 | 25 | 415 | 1 | 386 | 6.50e-15 | 76.6 |
MS.gene99982.t1 | AT5G60610 | 24.455 | 413 | 263 | 15 | 25 | 415 | 1 | 386 | 6.50e-15 | 76.6 |
MS.gene99982.t1 | AT3G42770 | 25.561 | 446 | 270 | 13 | 28 | 440 | 1 | 417 | 1.26e-14 | 76.3 |
MS.gene99982.t1 | AT3G59160 | 28.509 | 228 | 123 | 9 | 19 | 217 | 8 | 224 | 3.59e-14 | 74.7 |
MS.gene99982.t1 | AT5G44940 | 24.083 | 436 | 259 | 15 | 24 | 448 | 3 | 377 | 4.21e-14 | 73.9 |
MS.gene99982.t1 | AT2G26030 | 24.411 | 467 | 274 | 20 | 26 | 445 | 4 | 438 | 6.72e-14 | 73.9 |
MS.gene99982.t1 | AT2G26030 | 24.411 | 467 | 274 | 20 | 26 | 445 | 4 | 438 | 6.72e-14 | 73.9 |
MS.gene99982.t1 | AT2G26030 | 24.255 | 470 | 276 | 21 | 26 | 445 | 4 | 443 | 1.76e-13 | 72.4 |
MS.gene99982.t1 | AT5G50270 | 25.117 | 426 | 262 | 12 | 25 | 420 | 1 | 399 | 3.26e-13 | 71.6 |
MS.gene99982.t1 | AT2G04230 | 27.155 | 464 | 271 | 21 | 26 | 450 | 13 | 448 | 3.88e-13 | 71.6 |
MS.gene99982.t1 | AT1G13780 | 24.569 | 464 | 285 | 18 | 26 | 445 | 10 | 452 | 9.62e-13 | 70.5 |
MS.gene99982.t1 | AT3G59190 | 30.348 | 201 | 117 | 9 | 26 | 214 | 12 | 201 | 1.83e-12 | 69.7 |
MS.gene99982.t1 | AT3G59190 | 30.288 | 208 | 120 | 10 | 19 | 214 | 7 | 201 | 2.31e-12 | 68.9 |
MS.gene99982.t1 | AT1G78760 | 23.789 | 475 | 287 | 21 | 19 | 449 | 2 | 445 | 3.11e-12 | 68.6 |
MS.gene99982.t1 | AT1G16930 | 31.313 | 198 | 112 | 10 | 26 | 216 | 15 | 195 | 3.75e-12 | 68.6 |
MS.gene99982.t1 | AT1G16930 | 31.313 | 198 | 112 | 10 | 26 | 216 | 15 | 195 | 3.75e-12 | 68.6 |
MS.gene99982.t1 | AT1G16930 | 31.313 | 198 | 112 | 10 | 26 | 216 | 15 | 195 | 3.75e-12 | 68.6 |
MS.gene99982.t1 | AT2G42720 | 30.769 | 195 | 125 | 5 | 25 | 214 | 1 | 190 | 5.12e-12 | 68.2 |
MS.gene99982.t1 | AT1G66310 | 25.105 | 474 | 280 | 22 | 10 | 445 | 3 | 439 | 6.26e-12 | 67.8 |
MS.gene99982.t1 | AT3G59170 | 30.455 | 220 | 113 | 9 | 26 | 214 | 7 | 217 | 7.42e-12 | 67.8 |
MS.gene99982.t1 | AT4G14103 | 28.571 | 196 | 122 | 6 | 26 | 214 | 8 | 192 | 8.13e-12 | 67.4 |
MS.gene99982.t1 | AT4G14103 | 28.571 | 196 | 122 | 6 | 26 | 214 | 8 | 192 | 1.14e-11 | 66.6 |
MS.gene99982.t1 | AT4G14103 | 28.571 | 196 | 122 | 6 | 26 | 214 | 8 | 192 | 1.14e-11 | 66.6 |
MS.gene99982.t1 | AT1G55030 | 25.918 | 463 | 289 | 20 | 7 | 447 | 1 | 431 | 1.69e-11 | 66.2 |
MS.gene99982.t1 | AT3G59200 | 28.141 | 199 | 121 | 6 | 26 | 214 | 7 | 193 | 1.81e-11 | 65.9 |
MS.gene99982.t1 | AT5G22720 | 23.744 | 438 | 258 | 18 | 26 | 415 | 23 | 432 | 2.65e-11 | 65.9 |
MS.gene99982.t1 | AT3G59200 | 28.141 | 199 | 121 | 6 | 26 | 214 | 7 | 193 | 2.91e-11 | 65.9 |
MS.gene99982.t1 | AT1G55030 | 25.893 | 448 | 279 | 19 | 22 | 447 | 5 | 421 | 3.40e-11 | 65.5 |
Find 117 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTAAACACTGCAGTCTTTC+TGG | 0.129894 | 8.4:-39295452 | MS.gene99982:intron |
AAACGAAGGATATATTAATT+TGG | 0.153932 | 8.4:-39295183 | MS.gene99982:CDS |
CCCCAAGCTGGAAACTTTGC+AGG | 0.229332 | 8.4:-39295315 | MS.gene99982:CDS |
GATTGGCCGGTTTCGAGCTC+TGG | 0.257085 | 8.4:+39295234 | None:intergenic |
GCTCCAACCTCCTTTCTCTT+AGG | 0.263650 | 8.4:-39295810 | MS.gene99982:intron |
GTCTCTCGGCACAGAAATTA+TGG | 0.288190 | 8.4:-39295372 | MS.gene99982:CDS |
ACCTGCAAAGTTTCCAGCTT+GGG | 0.309530 | 8.4:+39295314 | None:intergenic |
AACGAAGGATATATTAATTT+GGG | 0.327225 | 8.4:-39295182 | MS.gene99982:CDS |
CTCGCCGGTGGCGCCACCTC+TGG | 0.341008 | 8.4:-39296122 | MS.gene99982:CDS |
CTGACCTATGTTCACATAGA+AGG | 0.351633 | 8.4:-39294576 | MS.gene99982:CDS |
TATATTAATTTGGGCATTGT+AGG | 0.357147 | 8.4:-39295173 | MS.gene99982:CDS |
ATGTTTCAACTCAAATCTTC+TGG | 0.358687 | 8.4:-39294851 | MS.gene99982:CDS |
GAGATAGAGGTGTTGAAGTT+GGG | 0.360637 | 8.4:+39295885 | None:intergenic |
ACTAGGAGGTGGTCGAGAAC+AGG | 0.375934 | 8.4:+39295083 | None:intergenic |
AGAGATAGAGGTGTTGAAGT+TGG | 0.394213 | 8.4:+39295884 | None:intergenic |
GTAGACGGTAACAATAGAAT+TGG | 0.396091 | 8.4:+39296082 | None:intergenic |
TTCCAACTAGAACCTCTGTT+TGG | 0.407347 | 8.4:-39296161 | MS.gene99982:CDS |
TTGGAAGGAAGGACATGATA+TGG | 0.420389 | 8.4:+39296178 | None:intergenic |
TGTAGGCAACTTTCACACTA+TGG | 0.425217 | 8.4:-39295156 | MS.gene99982:CDS |
AAATTACTTTCCTTCCTCTC+TGG | 0.429603 | 8.4:-39295341 | MS.gene99982:CDS |
CCTCTCTGGCTGCCCCAAGC+TGG | 0.444251 | 8.4:-39295327 | MS.gene99982:CDS |
AATTCAGGATAATTTAGAAC+AGG | 0.454737 | 8.4:+39294907 | None:intergenic |
CAACATTCATAAGTTCCATC+TGG | 0.460243 | 8.4:-39295995 | MS.gene99982:CDS |
CCTTCCAGAGGTGGCGCCAC+CGG | 0.463852 | 8.4:+39296118 | None:intergenic |
ACCATTGAGAACATGGCAAC+CGG | 0.465455 | 8.4:-39294634 | MS.gene99982:CDS |
CCGTAGATTTATAGCATCAT+GGG | 0.467450 | 8.4:+39295058 | None:intergenic |
TGCGGAAATTGCGGAGGTTG+AGG | 0.468343 | 8.4:+39296016 | None:intergenic |
CGGCCAATCATAATTTCACT+TGG | 0.470608 | 8.4:-39295220 | MS.gene99982:CDS |
CAATTGATGAAGAGGGAAGG+AGG | 0.470818 | 8.4:+39295832 | None:intergenic |
AGTCCAAGTGAAATTATGAT+TGG | 0.480791 | 8.4:+39295217 | None:intergenic |
TTATAGCATCATGGGGAACT+AGG | 0.481247 | 8.4:+39295066 | None:intergenic |
AATTGATGAAGAGGGAAGGA+GGG | 0.486231 | 8.4:+39295833 | None:intergenic |
AACCTGCAAAGTTTCCAGCT+TGG | 0.491460 | 8.4:+39295313 | None:intergenic |
GACCCAACTGTATCCTCATA+AGG | 0.492983 | 8.4:-39294378 | None:intergenic |
ATTGGCCGGTTTCGAGCTCT+GGG | 0.493701 | 8.4:+39295235 | None:intergenic |
ACCTCTTCTGTTGATTTCTG+TGG | 0.494682 | 8.4:+39296264 | None:intergenic |
ACCGTAGATTTATAGCATCA+TGG | 0.495398 | 8.4:+39295057 | None:intergenic |
CAATGTGAACATAGAGATAG+AGG | 0.499821 | 8.4:+39295872 | None:intergenic |
AACAATAGAATTGGAAGACT+TGG | 0.508845 | 8.4:+39296091 | None:intergenic |
AAGATTAACAAATATATCAA+AGG | 0.513545 | 8.4:-39294427 | MS.gene99982:CDS |
TTCCTCCCAGAGCTCGAAAC+CGG | 0.515568 | 8.4:-39295240 | MS.gene99982:CDS |
TGAGAGGTTACCTAAGAGAA+AGG | 0.516975 | 8.4:+39295800 | None:intergenic |
ATATGGCACAGGAGTGTGTT+CGG | 0.519601 | 8.4:+39296195 | None:intergenic |
GTCCAAACAGAGGTTCTAGT+TGG | 0.524498 | 8.4:+39296159 | None:intergenic |
TACCTTATGAGGATACAGTT+GGG | 0.528201 | 8.4:+39294376 | None:intergenic |
TGAATGGAATTGAATGTAGA+CGG | 0.528341 | 8.4:+39296067 | None:intergenic |
CTTGGGGCAGCCAGAGAGGA+AGG | 0.529957 | 8.4:+39295331 | None:intergenic |
GGTTGGAGCAATTGATGAAG+AGG | 0.530052 | 8.4:+39295824 | None:intergenic |
TTCGAGCTCTGGGAGGAAGA+TGG | 0.530767 | 8.4:+39295245 | None:intergenic |
GTTCACATAGAAGGGTATCA+AGG | 0.534998 | 8.4:-39294567 | MS.gene99982:CDS |
CGACAAATTCACTCTCAAAA+CGG | 0.535261 | 8.4:+39295108 | None:intergenic |
AGATTAACAAATATATCAAA+GGG | 0.542609 | 8.4:-39294426 | MS.gene99982:CDS |
CAAGTGAAATTATGATTGGC+CGG | 0.542813 | 8.4:+39295221 | None:intergenic |
CTTCTATGTGAACATAGGTC+AGG | 0.542971 | 8.4:+39294577 | None:intergenic |
TCCGGTTGCCATGTTCTCAA+TGG | 0.544353 | 8.4:+39294633 | None:intergenic |
CCCATGATGCTATAAATCTA+CGG | 0.544523 | 8.4:-39295058 | MS.gene99982:CDS |
TGATGAAGAGGGAAGGAGGG+AGG | 0.545199 | 8.4:+39295836 | None:intergenic |
CTATGAGCCTCGTCTCTCGC+CGG | 0.546013 | 8.4:-39296137 | MS.gene99982:CDS |
CCGGTGGCGCCACCTCTGGA+AGG | 0.547084 | 8.4:-39296118 | MS.gene99982:CDS |
CAGTTGGGTCGAACTTAAGT+TGG | 0.547514 | 8.4:+39294391 | None:intergenic |
TCAGAAACTGTTGTTGACTC+CGG | 0.549273 | 8.4:+39294615 | None:intergenic |
GTGTTGAAGTTGGGGTCCAA+TGG | 0.551379 | 8.4:+39295894 | None:intergenic |
CCAGCTTGGGGCAGCCAGAG+AGG | 0.557168 | 8.4:+39295327 | None:intergenic |
TGCCATGTTCTCAATGGTGG+TGG | 0.557408 | 8.4:+39294639 | None:intergenic |
TTACCTTATGAGGATACAGT+TGG | 0.557869 | 8.4:+39294375 | None:intergenic |
AACCACCACCATTGAGAACA+TGG | 0.560977 | 8.4:-39294641 | MS.gene99982:CDS |
GTTGGAGCAATTGATGAAGA+GGG | 0.561648 | 8.4:+39295825 | None:intergenic |
GCATTCGTCACAAAGACTGC+AGG | 0.566927 | 8.4:+39295275 | None:intergenic |
GTTGGGGTCCAATGGCATCA+AGG | 0.569817 | 8.4:+39295902 | None:intergenic |
TCGTGGATCCTTGATGCCAT+TGG | 0.570896 | 8.4:-39295910 | MS.gene99982:CDS |
TATGAATGTTGCGGAAATTG+CGG | 0.578436 | 8.4:+39296007 | None:intergenic |
TTGTCCATTGTGTTGAATCG+TGG | 0.580006 | 8.4:-39295927 | MS.gene99982:CDS |
ATACCCTTCTATGTGAACAT+AGG | 0.580469 | 8.4:+39294572 | None:intergenic |
AGATAGAGGTGTTGAAGTTG+GGG | 0.580903 | 8.4:+39295886 | None:intergenic |
AAACAGAGGTTCTAGTTGGA+AGG | 0.581002 | 8.4:+39296163 | None:intergenic |
GAGCAATTGATGAAGAGGGA+AGG | 0.585056 | 8.4:+39295829 | None:intergenic |
AGAAGATTTGAGTTGAAACA+TGG | 0.586977 | 8.4:+39294853 | None:intergenic |
CCTGCAAAGTTTCCAGCTTG+GGG | 0.588595 | 8.4:+39295315 | None:intergenic |
CTATGTGAACATAGGTCAGG+TGG | 0.588925 | 8.4:+39294580 | None:intergenic |
TGACCTATGTTCACATAGAA+GGG | 0.590318 | 8.4:-39294575 | MS.gene99982:CDS |
AGAGACAACATCTTCAGTGA+TGG | 0.590452 | 8.4:+39295389 | None:intergenic |
GGAAGGACATGATATGGCAC+AGG | 0.590863 | 8.4:+39296184 | None:intergenic |
TTACCTAAGAGAAAGGAGGT+TGG | 0.592640 | 8.4:+39295807 | None:intergenic |
AGAGGTTCTAGTTGGAAGGA+AGG | 0.597523 | 8.4:+39296167 | None:intergenic |
CTAGGAGGTGGTCGAGAACA+GGG | 0.599798 | 8.4:+39295084 | None:intergenic |
GATTTGAGTTGAAACATGGA+AGG | 0.600986 | 8.4:+39294857 | None:intergenic |
GAGGTAGCAAACGATGGCGG+AGG | 0.604651 | 8.4:-39296246 | MS.gene99982:CDS |
CATCATGGGGAACTAGGAGG+TGG | 0.608053 | 8.4:+39295072 | None:intergenic |
ACCACAGAAATCAACAGAAG+AGG | 0.609462 | 8.4:-39296265 | MS.gene99982:CDS |
TCACTGAAGATGTTGTCTCT+CGG | 0.611749 | 8.4:-39295386 | MS.gene99982:CDS |
GGCGCCACCGGCGAGAGACG+AGG | 0.612718 | 8.4:+39296130 | None:intergenic |
CTTGGAGATCCTTCCAGAGG+TGG | 0.619949 | 8.4:+39296109 | None:intergenic |
TGAGCCTCGTCTCTCGCCGG+TGG | 0.621828 | 8.4:-39296134 | MS.gene99982:CDS |
GATGGAACTTATGAATGTTG+CGG | 0.629837 | 8.4:+39295998 | None:intergenic |
GATGGCGGAGTCAAGAAGCA+TGG | 0.630071 | 8.4:-39296289 | MS.gene99982:CDS |
GTTGCGTCATTCGACATCAA+AGG | 0.630198 | 8.4:-39295036 | MS.gene99982:intron |
TATGTGAACATAGGTCAGGT+GGG | 0.643030 | 8.4:+39294581 | None:intergenic |
GATGAAAGGTGAGATCCAGA+TGG | 0.644384 | 8.4:+39295980 | None:intergenic |
GGTTGCCATGTTCTCAATGG+TGG | 0.646260 | 8.4:+39294636 | None:intergenic |
GGCCGGTTTCGAGCTCTGGG+AGG | 0.664051 | 8.4:+39295238 | None:intergenic |
ACTTACTTCGATATAAACGA+AGG | 0.665297 | 8.4:-39295197 | MS.gene99982:CDS |
TCTTTCTGGTAAGATCAGCA+TGG | 0.667331 | 8.4:-39295438 | MS.gene99982:CDS |
TTATGAGAACTTGAAGCATG+CGG | 0.670506 | 8.4:+39294809 | None:intergenic |
AGGCAACTTTCACACTATGG+AGG | 0.670571 | 8.4:-39295153 | MS.gene99982:CDS |
TGCGGCATTTCTCAAGCACG+TGG | 0.671395 | 8.4:+39294827 | None:intergenic |
CGTAGATTTATAGCATCATG+GGG | 0.673823 | 8.4:+39295059 | None:intergenic |
ACAGAAGAGGTAGCAAACGA+TGG | 0.677130 | 8.4:-39296252 | MS.gene99982:CDS |
TCTCATAATTCAGAGCAACA+AGG | 0.677248 | 8.4:-39294794 | MS.gene99982:intron |
GAAGAGGTAGCAAACGATGG+CGG | 0.678690 | 8.4:-39296249 | MS.gene99982:CDS |
TAGCATCATGGGGAACTAGG+AGG | 0.681420 | 8.4:+39295069 | None:intergenic |
GGATCCACGATTCAACACAA+TGG | 0.681593 | 8.4:+39295923 | None:intergenic |
GAGGTTACCTAAGAGAAAGG+AGG | 0.687048 | 8.4:+39295803 | None:intergenic |
AGACTTGGAGATCCTTCCAG+AGG | 0.695151 | 8.4:+39296106 | None:intergenic |
TTCTGGTAAGATCAGCATGG+AGG | 0.697387 | 8.4:-39295435 | MS.gene99982:CDS |
GAATGTTGCGGAAATTGCGG+AGG | 0.710599 | 8.4:+39296010 | None:intergenic |
TTTAATGGACAAAACAGACA+AGG | 0.711577 | 8.4:-39294463 | MS.gene99982:CDS |
GAGGCTCATAGTCCAAACAG+AGG | 0.753115 | 8.4:+39296149 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTATATTTGTTATAAAAAAA+AGG | + | chr8.4:39295170-39295189 | None:intergenic | 10.0% |
!! | AAGATTAACAAATATATCAA+AGG | - | chr8.4:39296241-39296260 | MS.gene99982:CDS | 15.0% |
!! | AGATTAACAAATATATCAAA+GGG | - | chr8.4:39296242-39296261 | MS.gene99982:CDS | 15.0% |
!! | CATAATATATAGTAATAAGA+AGG | + | chr8.4:39294916-39294935 | None:intergenic | 15.0% |
!!! | TATTTTTGTTGATAGTTTAA+TGG | - | chr8.4:39296190-39296209 | MS.gene99982:CDS | 15.0% |
!! | AAACGAAGGATATATTAATT+TGG | - | chr8.4:39295485-39295504 | MS.gene99982:intron | 20.0% |
!! | AACGAAGGATATATTAATTT+GGG | - | chr8.4:39295486-39295505 | MS.gene99982:intron | 20.0% |
!! | GTCATTACTCAAAAATATAT+TGG | + | chr8.4:39295980-39295999 | None:intergenic | 20.0% |
!!! | AATAACAGAAACTTTTTGAA+TGG | + | chr8.4:39294620-39294639 | None:intergenic | 20.0% |
!!! | TATATTTTTGAGTAATGACA+CGG | - | chr8.4:39295981-39296000 | MS.gene99982:CDS | 20.0% |
! | TGAGCATAAAAACAAATGAT+TGG | + | chr8.4:39294986-39295005 | None:intergenic | 25.0% |
!! | AATTCAGGATAATTTAGAAC+AGG | + | chr8.4:39295764-39295783 | None:intergenic | 25.0% |
!! | TATATTAATTTGGGCATTGT+AGG | - | chr8.4:39295495-39295514 | MS.gene99982:intron | 25.0% |
!!! | ATTGGTTTTGTCATTCAAAA+AGG | - | chr8.4:39295071-39295090 | MS.gene99982:CDS | 25.0% |
!!! | GCTGAATATATTTTGAAGAA+CGG | - | chr8.4:39296146-39296165 | MS.gene99982:CDS | 25.0% |
AAAATTGATACTGTGATGAG+AGG | + | chr8.4:39294887-39294906 | None:intergenic | 30.0% | |
AACAATAGAATTGGAAGACT+TGG | + | chr8.4:39294580-39294599 | None:intergenic | 30.0% | |
ACATGCATGTATATATTGAC+AGG | + | chr8.4:39295938-39295957 | None:intergenic | 30.0% | |
ACTTACTTCGATATAAACGA+AGG | - | chr8.4:39295471-39295490 | MS.gene99982:intron | 30.0% | |
AGTCCAAGTGAAATTATGAT+TGG | + | chr8.4:39295454-39295473 | None:intergenic | 30.0% | |
AGTTTAATCCAAACAATCTC+TGG | - | chr8.4:39295912-39295931 | MS.gene99982:CDS | 30.0% | |
ATAGCAATGTTGTGTCAATT+AGG | - | chr8.4:39295024-39295043 | MS.gene99982:intron | 30.0% | |
ATGTTTCAACTCAAATCTTC+TGG | - | chr8.4:39295817-39295836 | MS.gene99982:CDS | 30.0% | |
GAGATAAGAGTTGTCAAAAA+CGG | + | chr8.4:39294717-39294736 | None:intergenic | 30.0% | |
TGAATGGAATTGAATGTAGA+CGG | + | chr8.4:39294604-39294623 | None:intergenic | 30.0% | |
TGTCATTCAAAAAGGATTTG+CGG | - | chr8.4:39295079-39295098 | MS.gene99982:CDS | 30.0% | |
! | TTTAATGGACAAAACAGACA+AGG | - | chr8.4:39296205-39296224 | MS.gene99982:CDS | 30.0% |
! | TTTTATGCTCAAACCGAAAA+GGG | - | chr8.4:39294995-39295014 | MS.gene99982:intron | 30.0% |
! | TTTTGTAAATCGCGAAATTC+AGG | + | chr8.4:39295779-39295798 | None:intergenic | 30.0% |
! | TTTTTATGCTCAAACCGAAA+AGG | - | chr8.4:39294994-39295013 | MS.gene99982:intron | 30.0% |
!! | AAGGTGAGGTTTTACTTTTA+TGG | - | chr8.4:39295651-39295670 | MS.gene99982:intron | 30.0% |
!! | AGAAGATTTGAGTTGAAACA+TGG | + | chr8.4:39295818-39295837 | None:intergenic | 30.0% |
AAATTACTTTCCTTCCTCTC+TGG | - | chr8.4:39295327-39295346 | MS.gene99982:CDS | 35.0% | |
ACCGTAGATTTATAGCATCA+TGG | + | chr8.4:39295614-39295633 | None:intergenic | 35.0% | |
ATACCCTTCTATGTGAACAT+AGG | + | chr8.4:39296099-39296118 | None:intergenic | 35.0% | |
CAACATTCATAAGTTCCATC+TGG | - | chr8.4:39294673-39294692 | MS.gene99982:intron | 35.0% | |
CAAGTGAAATTATGATTGGC+CGG | + | chr8.4:39295450-39295469 | None:intergenic | 35.0% | |
CAATGTGAACATAGAGATAG+AGG | + | chr8.4:39294799-39294818 | None:intergenic | 35.0% | |
CCCATGATGCTATAAATCTA+CGG | - | chr8.4:39295610-39295629 | MS.gene99982:intron | 35.0% | |
CCGTAGATTTATAGCATCAT+GGG | + | chr8.4:39295613-39295632 | None:intergenic | 35.0% | |
CGACAAATTCACTCTCAAAA+CGG | + | chr8.4:39295563-39295582 | None:intergenic | 35.0% | |
CGTAGATTTATAGCATCATG+GGG | + | chr8.4:39295612-39295631 | None:intergenic | 35.0% | |
GATGGAACTTATGAATGTTG+CGG | + | chr8.4:39294673-39294692 | None:intergenic | 35.0% | |
GTAGACGGTAACAATAGAAT+TGG | + | chr8.4:39294589-39294608 | None:intergenic | 35.0% | |
TATGAATGTTGCGGAAATTG+CGG | + | chr8.4:39294664-39294683 | None:intergenic | 35.0% | |
TCTCATAATTCAGAGCAACA+AGG | - | chr8.4:39295874-39295893 | MS.gene99982:CDS | 35.0% | |
TGACCTATGTTCACATAGAA+GGG | - | chr8.4:39296093-39296112 | MS.gene99982:CDS | 35.0% | |
TTATGAGAACTTGAAGCATG+CGG | + | chr8.4:39295862-39295881 | None:intergenic | 35.0% | |
!! | GATTTGAGTTGAAACATGGA+AGG | + | chr8.4:39295814-39295833 | None:intergenic | 35.0% |
!! | TTGCTATTCATGACCCTTTT+CGG | + | chr8.4:39295011-39295030 | None:intergenic | 35.0% |
AATTGATGAAGAGGGAAGGA+GGG | + | chr8.4:39294838-39294857 | None:intergenic | 40.0% | |
ACCACAGAAATCAACAGAAG+AGG | - | chr8.4:39294403-39294422 | MS.gene99982:CDS | 40.0% | |
AGAGACAACATCTTCAGTGA+TGG | + | chr8.4:39295282-39295301 | None:intergenic | 40.0% | |
AGTGTTTACCAAAGACTGAC+AGG | + | chr8.4:39295206-39295225 | None:intergenic | 40.0% | |
CGGCCAATCATAATTTCACT+TGG | - | chr8.4:39295448-39295467 | MS.gene99982:intron | 40.0% | |
CTGACCTATGTTCACATAGA+AGG | - | chr8.4:39296092-39296111 | MS.gene99982:CDS | 40.0% | |
CTTCTATGTGAACATAGGTC+AGG | + | chr8.4:39296094-39296113 | None:intergenic | 40.0% | |
CTTTCGACGGTCTATTTAAG+AGG | - | chr8.4:39295048-39295067 | MS.gene99982:CDS | 40.0% | |
GACGGTCTATTTAAGAGGAT+TGG | - | chr8.4:39295053-39295072 | MS.gene99982:CDS | 40.0% | |
GTCAAAAACGGAACGATGAA+AGG | + | chr8.4:39294705-39294724 | None:intergenic | 40.0% | |
GTGTCAATTAGGTCTTTCGA+CGG | - | chr8.4:39295035-39295054 | MS.gene99982:intron | 40.0% | |
GTTGGAGCAATTGATGAAGA+GGG | + | chr8.4:39294846-39294865 | None:intergenic | 40.0% | |
TACATTGACCTGTCAGTCTT+TGG | - | chr8.4:39295195-39295214 | MS.gene99982:CDS | 40.0% | |
TATGTGAACATAGGTCAGGT+GGG | + | chr8.4:39296090-39296109 | None:intergenic | 40.0% | |
TCACTGAAGATGTTGTCTCT+CGG | - | chr8.4:39295282-39295301 | MS.gene99982:CDS | 40.0% | |
TGAGAGGTTACCTAAGAGAA+AGG | + | chr8.4:39294871-39294890 | None:intergenic | 40.0% | |
TGTAGGCAACTTTCACACTA+TGG | - | chr8.4:39295512-39295531 | MS.gene99982:intron | 40.0% | |
TTACCTAAGAGAAAGGAGGT+TGG | + | chr8.4:39294864-39294883 | None:intergenic | 40.0% | |
TTATAGCATCATGGGGAACT+AGG | + | chr8.4:39295605-39295624 | None:intergenic | 40.0% | |
TTCCAACTAGAACCTCTGTT+TGG | - | chr8.4:39294507-39294526 | MS.gene99982:CDS | 40.0% | |
TTGGAAGGAAGGACATGATA+TGG | + | chr8.4:39294493-39294512 | None:intergenic | 40.0% | |
TTGTCCATTGTGTTGAATCG+TGG | - | chr8.4:39294741-39294760 | MS.gene99982:intron | 40.0% | |
TTTCCTTTATTGCTGGTAGG+AGG | - | chr8.4:39296004-39296023 | MS.gene99982:CDS | 40.0% | |
! | AAACAGAGGTTCTAGTTGGA+AGG | + | chr8.4:39294508-39294527 | None:intergenic | 40.0% |
! | TCTTTCTGGTAAGATCAGCA+TGG | - | chr8.4:39295230-39295249 | MS.gene99982:CDS | 40.0% |
!! | ACCTCTTCTGTTGATTTCTG+TGG | + | chr8.4:39294407-39294426 | None:intergenic | 40.0% |
!! | AGAGATAGAGGTGTTGAAGT+TGG | + | chr8.4:39294787-39294806 | None:intergenic | 40.0% |
!! | AGATAGAGGTGTTGAAGTTG+GGG | + | chr8.4:39294785-39294804 | None:intergenic | 40.0% |
!! | GAGATAGAGGTGTTGAAGTT+GGG | + | chr8.4:39294786-39294805 | None:intergenic | 40.0% |
!! | GTTCACATAGAAGGGTATCA+AGG | - | chr8.4:39296101-39296120 | MS.gene99982:CDS | 40.0% |
!! | TCAGAAACTGTTGTTGACTC+CGG | + | chr8.4:39296056-39296075 | None:intergenic | 40.0% |
!!! | TGAAGAACGGACTTGTTTTG+AGG | - | chr8.4:39296159-39296178 | MS.gene99982:CDS | 40.0% |
AACCACCACCATTGAGAACA+TGG | - | chr8.4:39296027-39296046 | MS.gene99982:CDS | 45.0% | |
AACCTGCAAAGTTTCCAGCT+TGG | + | chr8.4:39295358-39295377 | None:intergenic | 45.0% | |
ACAGAAGAGGTAGCAAACGA+TGG | - | chr8.4:39294416-39294435 | MS.gene99982:CDS | 45.0% | |
ACCATTGAGAACATGGCAAC+CGG | - | chr8.4:39296034-39296053 | MS.gene99982:CDS | 45.0% | |
ACCTGCAAAGTTTCCAGCTT+GGG | + | chr8.4:39295357-39295376 | None:intergenic | 45.0% | |
AGGCAACTTTCACACTATGG+AGG | - | chr8.4:39295515-39295534 | MS.gene99982:intron | 45.0% | |
CAATTGATGAAGAGGGAAGG+AGG | + | chr8.4:39294839-39294858 | None:intergenic | 45.0% | |
CAGTTGGGTCGAACTTAAGT+TGG | + | chr8.4:39296280-39296299 | None:intergenic | 45.0% | |
CGGTTTCCTTTATTGCTGGT+AGG | - | chr8.4:39296001-39296020 | MS.gene99982:CDS | 45.0% | |
CTATGTGAACATAGGTCAGG+TGG | + | chr8.4:39296091-39296110 | None:intergenic | 45.0% | |
GACACGGTTTCCTTTATTGC+TGG | - | chr8.4:39295997-39296016 | MS.gene99982:CDS | 45.0% | |
GAGCAATTGATGAAGAGGGA+AGG | + | chr8.4:39294842-39294861 | None:intergenic | 45.0% | |
GAGGTTACCTAAGAGAAAGG+AGG | + | chr8.4:39294868-39294887 | None:intergenic | 45.0% | |
GATGAAAGGTGAGATCCAGA+TGG | + | chr8.4:39294691-39294710 | None:intergenic | 45.0% | |
GGATCCACGATTCAACACAA+TGG | + | chr8.4:39294748-39294767 | None:intergenic | 45.0% | |
GGTAAACACTGCAGTCTTTC+TGG | - | chr8.4:39295216-39295235 | MS.gene99982:CDS | 45.0% | |
GGTTGGAGCAATTGATGAAG+AGG | + | chr8.4:39294847-39294866 | None:intergenic | 45.0% | |
GTCATTCGACATCAAAGGTG+AGG | - | chr8.4:39295637-39295656 | MS.gene99982:intron | 45.0% | |
GTCTCTCGGCACAGAAATTA+TGG | - | chr8.4:39295296-39295315 | MS.gene99982:CDS | 45.0% | |
GTTCCTCCTACCAGCAATAA+AGG | + | chr8.4:39296010-39296029 | None:intergenic | 45.0% | |
GTTGCGTCATTCGACATCAA+AGG | - | chr8.4:39295632-39295651 | MS.gene99982:intron | 45.0% | |
TTCTGGTAAGATCAGCATGG+AGG | - | chr8.4:39295233-39295252 | MS.gene99982:CDS | 45.0% | |
TTGACAGGCCAGAGATTGTT+TGG | + | chr8.4:39295923-39295942 | None:intergenic | 45.0% | |
! | AGAGGTTCTAGTTGGAAGGA+AGG | + | chr8.4:39294504-39294523 | None:intergenic | 45.0% |
! | ATATGGCACAGGAGTGTGTT+CGG | + | chr8.4:39294476-39294495 | None:intergenic | 45.0% |
! | GTCCAAACAGAGGTTCTAGT+TGG | + | chr8.4:39294512-39294531 | None:intergenic | 45.0% |
AGACTTGGAGATCCTTCCAG+AGG | + | chr8.4:39294565-39294584 | None:intergenic | 50.0% | |
CCTGCAAAGTTTCCAGCTTG+GGG | + | chr8.4:39295356-39295375 | None:intergenic | 50.0% | |
GAAGAGGTAGCAAACGATGG+CGG | - | chr8.4:39294419-39294438 | MS.gene99982:CDS | 50.0% | |
GAATGTTGCGGAAATTGCGG+AGG | + | chr8.4:39294661-39294680 | None:intergenic | 50.0% | |
GAGGCTCATAGTCCAAACAG+AGG | + | chr8.4:39294522-39294541 | None:intergenic | 50.0% | |
GCATTCGTCACAAAGACTGC+AGG | + | chr8.4:39295396-39295415 | None:intergenic | 50.0% | |
GCTCCAACCTCCTTTCTCTT+AGG | - | chr8.4:39294858-39294877 | MS.gene99982:CDS | 50.0% | |
GGAAGGACATGATATGGCAC+AGG | + | chr8.4:39294487-39294506 | None:intergenic | 50.0% | |
GGTTGCCATGTTCTCAATGG+TGG | + | chr8.4:39296035-39296054 | None:intergenic | 50.0% | |
GTGTTGAAGTTGGGGTCCAA+TGG | + | chr8.4:39294777-39294796 | None:intergenic | 50.0% | |
TAGCATCATGGGGAACTAGG+AGG | + | chr8.4:39295602-39295621 | None:intergenic | 50.0% | |
TCCGGTTGCCATGTTCTCAA+TGG | + | chr8.4:39296038-39296057 | None:intergenic | 50.0% | |
TCGTGGATCCTTGATGCCAT+TGG | - | chr8.4:39294758-39294777 | MS.gene99982:intron | 50.0% | |
TGCCATGTTCTCAATGGTGG+TGG | + | chr8.4:39296032-39296051 | None:intergenic | 50.0% | |
ACTAGGAGGTGGTCGAGAAC+AGG | + | chr8.4:39295588-39295607 | None:intergenic | 55.0% | |
CATCATGGGGAACTAGGAGG+TGG | + | chr8.4:39295599-39295618 | None:intergenic | 55.0% | |
CCCCAAGCTGGAAACTTTGC+AGG | - | chr8.4:39295353-39295372 | MS.gene99982:CDS | 55.0% | |
CTAGGAGGTGGTCGAGAACA+GGG | + | chr8.4:39295587-39295606 | None:intergenic | 55.0% | |
CTTGGAGATCCTTCCAGAGG+TGG | + | chr8.4:39294562-39294581 | None:intergenic | 55.0% | |
GTTGGGGTCCAATGGCATCA+AGG | + | chr8.4:39294769-39294788 | None:intergenic | 55.0% | |
TGATGAAGAGGGAAGGAGGG+AGG | + | chr8.4:39294835-39294854 | None:intergenic | 55.0% | |
TGCGGAAATTGCGGAGGTTG+AGG | + | chr8.4:39294655-39294674 | None:intergenic | 55.0% | |
TGCGGCATTTCTCAAGCACG+TGG | + | chr8.4:39295844-39295863 | None:intergenic | 55.0% | |
TTCCTCCCAGAGCTCGAAAC+CGG | - | chr8.4:39295428-39295447 | MS.gene99982:CDS | 55.0% | |
! | ATTGGCCGGTTTCGAGCTCT+GGG | + | chr8.4:39295436-39295455 | None:intergenic | 55.0% |
!! | TTCGAGCTCTGGGAGGAAGA+TGG | + | chr8.4:39295426-39295445 | None:intergenic | 55.0% |
CTATGAGCCTCGTCTCTCGC+CGG | - | chr8.4:39294531-39294550 | MS.gene99982:CDS | 60.0% | |
! | GAGGTAGCAAACGATGGCGG+AGG | - | chr8.4:39294422-39294441 | MS.gene99982:CDS | 60.0% |
! | GATTGGCCGGTTTCGAGCTC+TGG | + | chr8.4:39295437-39295456 | None:intergenic | 60.0% |
CTTGGGGCAGCCAGAGAGGA+AGG | + | chr8.4:39295340-39295359 | None:intergenic | 65.0% | |
CCAGCTTGGGGCAGCCAGAG+AGG | + | chr8.4:39295344-39295363 | None:intergenic | 70.0% | |
CCTCTCTGGCTGCCCCAAGC+TGG | - | chr8.4:39295341-39295360 | MS.gene99982:CDS | 70.0% | |
CCTTCCAGAGGTGGCGCCAC+CGG | + | chr8.4:39294553-39294572 | None:intergenic | 70.0% | |
TGAGCCTCGTCTCTCGCCGG+TGG | - | chr8.4:39294534-39294553 | MS.gene99982:CDS | 70.0% | |
!! | GGCCGGTTTCGAGCTCTGGG+AGG | + | chr8.4:39295433-39295452 | None:intergenic | 70.0% |
CCGGTGGCGCCACCTCTGGA+AGG | - | chr8.4:39294550-39294569 | MS.gene99982:CDS | 75.0% | |
! | CTCGCCGGTGGCGCCACCTC+TGG | - | chr8.4:39294546-39294565 | MS.gene99982:CDS | 80.0% |
! | GGCGCCACCGGCGAGAGACG+AGG | + | chr8.4:39294541-39294560 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 39294380 | 39296310 | 39294380 | ID=MS.gene99982 |
chr8.4 | mRNA | 39294380 | 39296310 | 39294380 | ID=MS.gene99982.t1;Parent=MS.gene99982 |
chr8.4 | exon | 39295811 | 39296310 | 39295811 | ID=MS.gene99982.t1.exon1;Parent=MS.gene99982.t1 |
chr8.4 | CDS | 39295811 | 39296310 | 39295811 | ID=cds.MS.gene99982.t1;Parent=MS.gene99982.t1 |
chr8.4 | exon | 39295037 | 39295460 | 39295037 | ID=MS.gene99982.t1.exon2;Parent=MS.gene99982.t1 |
chr8.4 | CDS | 39295037 | 39295460 | 39295037 | ID=cds.MS.gene99982.t1;Parent=MS.gene99982.t1 |
chr8.4 | exon | 39294795 | 39294944 | 39294795 | ID=MS.gene99982.t1.exon3;Parent=MS.gene99982.t1 |
chr8.4 | CDS | 39294795 | 39294944 | 39294795 | ID=cds.MS.gene99982.t1;Parent=MS.gene99982.t1 |
chr8.4 | exon | 39294380 | 39294667 | 39294380 | ID=MS.gene99982.t1.exon4;Parent=MS.gene99982.t1 |
chr8.4 | CDS | 39294380 | 39294667 | 39294380 | ID=cds.MS.gene99982.t1;Parent=MS.gene99982.t1 |
Gene Sequence |
Protein sequence |