AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63112

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63112.t1 MTR_8g062310 57.812 448 167 7 1 446 1 428 4.23e-169 482
MS.gene63112.t1 MTR_8g062080 58.511 470 156 11 1 451 1 450 2.12e-167 478
MS.gene63112.t1 MTR_8g070950 58.315 463 145 11 7 450 5 438 7.96e-165 472
MS.gene63112.t1 MTR_8g062010 60.046 438 146 9 30 450 9 434 2.01e-163 468
MS.gene63112.t1 MTR_8g062300 54.694 490 170 14 4 451 3 482 6.13e-160 461
MS.gene63112.t1 MTR_8g469020 53.275 458 170 9 29 450 6 455 3.58e-148 430
MS.gene63112.t1 MTR_8g058965 55.142 457 162 11 30 451 13 461 1.98e-145 423
MS.gene63112.t1 MTR_4g050250 51.034 435 155 15 1 392 1 420 3.98e-121 360
MS.gene63112.t1 MTR_8g467790 47.520 383 144 9 30 391 148 494 1.28e-97 302
MS.gene63112.t1 MTR_8g468810 41.597 476 226 19 7 446 4 463 1.81e-86 272
MS.gene63112.t1 MTR_2g083840 41.328 467 227 15 8 446 10 457 8.18e-84 265
MS.gene63112.t1 MTR_8g062270 39.868 454 219 18 30 445 16 453 1.07e-75 244
MS.gene63112.t1 MTR_8g014260 39.112 473 234 20 6 446 1 451 3.00e-75 243
MS.gene63112.t1 MTR_8g058970 37.755 490 239 16 7 446 4 477 4.64e-75 243
MS.gene63112.t1 MTR_4g032730 37.209 473 239 15 19 445 6 466 1.57e-73 239
MS.gene63112.t1 MTR_8g467800 37.630 481 233 18 5 446 1 453 8.21e-71 231
MS.gene63112.t1 MTR_2g086020 77.241 145 33 0 306 450 175 319 8.41e-71 227
MS.gene63112.t1 MTR_2g086020 45.333 150 63 3 56 199 1 137 8.11e-29 115
MS.gene63112.t1 MTR_5g092960 36.478 477 250 15 6 445 1 461 4.54e-68 224
MS.gene63112.t1 MTR_8g468760 38.717 452 199 18 30 445 9 418 9.88e-63 209
MS.gene63112.t1 MTR_8g468810 40.420 381 183 15 7 356 4 371 5.98e-60 200
MS.gene63112.t1 MTR_8g468840 37.079 445 240 13 30 444 14 448 3.65e-59 201
MS.gene63112.t1 MTR_8g077460 36.986 438 199 17 22 446 2 375 6.84e-57 192
MS.gene63112.t1 MTR_8g445780 38.000 400 196 16 30 399 13 390 7.06e-57 193
MS.gene63112.t1 MTR_8g014160 35.268 448 238 17 9 446 20 425 4.35e-54 186
MS.gene63112.t1 MTR_8g468810 42.574 303 139 12 7 286 4 294 1.91e-52 179
MS.gene63112.t1 MTR_8g468810 42.574 303 139 12 7 286 4 294 2.82e-52 179
MS.gene63112.t1 MTR_8g468810 42.574 303 139 12 7 286 4 294 4.01e-52 179
MS.gene63112.t1 MTR_5g092960 35.659 387 197 14 6 356 1 371 7.02e-43 156
MS.gene63112.t1 MTR_4g024710 36.913 298 162 13 171 446 54 347 1.66e-42 154
MS.gene63112.t1 MTR_8g467800 37.097 310 145 14 5 286 1 288 2.98e-34 131
MS.gene63112.t1 MTR_8g014210 38.767 227 120 8 235 446 9 231 1.90e-32 123
MS.gene63112.t1 MTR_4g024745 36.201 279 152 13 169 425 6 280 4.12e-31 121
MS.gene63112.t1 MTR_3g099800 63.218 87 31 1 358 443 19 105 3.25e-29 110
MS.gene63112.t1 MTR_5g021550 45.714 175 67 8 7 170 5 162 7.79e-28 108
MS.gene63112.t1 MTR_7g098510 27.753 454 247 18 7 446 5 391 1.49e-27 113
MS.gene63112.t1 MTR_5g008950 26.512 430 236 17 32 446 1 365 6.42e-24 103
MS.gene63112.t1 MTR_8g014290 41.818 165 73 6 22 170 2 159 2.88e-23 96.3
MS.gene63112.t1 MTR_5g080710 28.406 433 271 16 28 438 31 446 3.06e-22 99.4
MS.gene63112.t1 MTR_1g041245 27.563 439 243 16 25 446 6 386 1.77e-21 96.3
MS.gene63112.t1 MTR_5g084070 28.306 431 267 18 28 438 11 419 2.09e-21 96.7
MS.gene63112.t1 MTR_3g108150 27.650 434 246 17 25 445 8 386 8.31e-21 94.4
MS.gene63112.t1 MTR_7g033915 26.941 438 224 21 25 445 6 364 7.39e-20 91.3
MS.gene63112.t1 MTR_5g045170 26.622 447 256 18 22 451 6 397 3.67e-19 89.4
MS.gene63112.t1 MTR_7g033990 26.682 431 240 19 25 439 6 376 4.37e-19 89.4
MS.gene63112.t1 MTR_7g098570 25.714 455 255 18 2 442 4 389 7.82e-18 86.3
MS.gene63112.t1 MTR_8g014230 46.429 84 43 2 356 439 17 98 1.64e-17 78.2
MS.gene63112.t1 MTR_4g024720 36.842 171 81 6 24 171 11 177 1.96e-17 81.3
MS.gene63112.t1 MTR_5g073420 26.485 404 217 16 30 418 11 349 2.91e-17 83.6
MS.gene63112.t1 MTR_6g022500 25.000 448 247 17 23 446 94 476 9.92e-17 82.8
MS.gene63112.t1 MTR_3g023630 27.714 433 238 20 26 446 4 373 1.67e-16 81.3
MS.gene63112.t1 MTR_2g036470 24.194 434 281 12 19 445 3 395 1.04e-15 79.0
MS.gene63112.t1 MTR_3g036250 24.586 423 248 15 29 443 4 363 1.55e-15 78.2
MS.gene63112.t1 MTR_7g026500 25.740 439 245 20 30 445 14 394 2.96e-15 77.8
MS.gene63112.t1 MTR_4g056030 28.864 440 240 19 25 418 4 416 1.11e-14 76.3
MS.gene63112.t1 MTR_6g022360 25.866 433 238 17 29 445 42 407 6.16e-14 73.6
MS.gene63112.t1 MTR_2g007400 24.781 456 250 21 25 446 7 403 2.95e-13 71.6
MS.gene63112.t1 MTR_5g058100 23.678 435 267 12 23 445 2 383 4.82e-13 70.9
MS.gene63112.t1 MTR_3g040700 24.682 393 220 15 25 405 38 366 7.16e-13 70.5
MS.gene63112.t1 MTR_7g032380 34.328 201 108 9 29 222 10 193 9.10e-13 69.7
MS.gene63112.t1 MTR_7g032380 35.135 111 70 2 337 446 247 356 9.82e-11 63.5
MS.gene63112.t1 MTR_4g098590 25.666 413 242 16 32 425 1 367 2.55e-12 68.6
MS.gene63112.t1 MTR_2g007500 30.962 239 123 9 9 239 3 207 5.39e-12 67.4
MS.gene63112.t1 MTR_1g038710 32.850 207 115 8 25 220 14 207 2.76e-11 65.9
MS.gene63112.t1 MTR_7g056447 31.500 200 105 9 30 219 9 186 3.39e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63112.t1 AT5G56420 25.612 449 278 16 26 446 2 422 9.57e-23 100
MS.gene63112.t1 AT5G56420 25.612 449 278 16 26 446 2 422 9.57e-23 100
MS.gene63112.t1 AT5G56420 25.612 449 278 16 26 446 2 422 9.57e-23 100
MS.gene63112.t1 AT1G32375 27.027 444 274 16 30 446 2 422 9.79e-20 91.7
MS.gene63112.t1 AT1G32375 27.027 444 274 16 30 446 2 422 9.79e-20 91.7
MS.gene63112.t1 AT5G56560 27.540 443 264 21 31 446 6 418 4.14e-18 86.7
MS.gene63112.t1 AT5G53840 25.503 447 289 16 22 443 10 437 1.51e-16 82.0
MS.gene63112.t1 AT5G56400 24.554 448 286 17 28 446 31 455 2.94e-16 81.3
MS.gene63112.t1 AT4G26340 27.273 451 261 21 30 446 2 419 3.21e-14 74.7
MS.gene63112.t1 AT1G69630 24.590 488 278 21 6 443 1 448 9.20e-14 73.6
MS.gene63112.t1 AT4G13965 26.862 443 269 19 27 443 7 420 9.43e-14 73.2
MS.gene63112.t1 AT5G50270 29.070 430 222 22 30 413 2 394 1.41e-13 72.8
MS.gene63112.t1 AT5G38570 24.941 425 259 15 30 445 2 375 7.78e-13 70.1
MS.gene63112.t1 AT5G56370 24.512 461 261 18 30 445 2 420 3.71e-12 68.2
MS.gene63112.t1 AT5G56370 24.512 461 261 18 30 445 2 420 3.71e-12 68.2
MS.gene63112.t1 AT3G59190 32.000 200 117 9 30 220 12 201 8.58e-12 67.4
MS.gene63112.t1 AT3G59190 32.000 200 117 9 30 220 12 201 8.74e-12 67.0
MS.gene63112.t1 AT1G48400 29.500 200 126 5 26 220 6 195 1.59e-11 66.6
MS.gene63112.t1 AT1G06630 30.622 209 135 4 17 220 8 211 1.60e-11 66.2
MS.gene63112.t1 AT1G48400 29.500 200 126 5 26 220 6 195 2.04e-11 66.2
MS.gene63112.t1 AT1G06630 30.583 206 133 4 20 220 2 202 2.19e-11 65.1
MS.gene63112.t1 AT1G06630 30.583 206 133 4 20 220 2 202 2.69e-11 65.5
MS.gene63112.t1 AT1G06630 30.583 206 133 4 20 220 2 202 2.69e-11 65.5
MS.gene63112.t1 AT1G06630 30.583 206 133 4 20 220 2 202 2.69e-11 65.5
MS.gene63112.t1 AT1G06630 30.583 206 133 4 20 220 2 202 2.69e-11 65.5
MS.gene63112.t1 AT1G06630 30.097 206 134 4 20 220 2 202 3.10e-11 65.1
MS.gene63112.t1 AT1G06630 30.097 206 134 4 20 220 2 202 3.10e-11 65.1
MS.gene63112.t1 AT1G06630 30.583 206 133 4 20 220 2 202 3.44e-11 65.5
MS.gene63112.t1 AT5G60610 24.757 412 249 17 30 410 2 383 3.87e-11 65.1
MS.gene63112.t1 AT5G60610 24.757 412 249 17 30 410 2 383 3.87e-11 65.1

Find 119 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATATATATGGCTTCAAAT+TGG 0.193454 8.1:-43172380 MS.gene63112:CDS
TGCAGTTACTTTGATATATA+TGG 0.218751 8.1:-43172391 MS.gene63112:CDS
AGAAAGTCTCCAAAGTTTCT+AGG 0.252021 8.1:+43172485 None:intergenic
CTCTTGGTTGATTCCAGCTT+GGG 0.261405 8.1:+43172442 None:intergenic
CGGAAACCACGGAAAGAAAT+AGG 0.261516 8.1:-43173284 MS.gene63112:CDS
TTTGAGGAACGGACTTGTTT+TGG 0.284546 8.1:-43171683 MS.gene63112:CDS
TGATCTAATTGACGAAATTC+TGG 0.297717 8.1:+43172076 None:intergenic
CGGTGCCATTATAGATTTCC+AGG 0.302787 8.1:+43172545 None:intergenic
TGTGGCTCCCATGTTCTTAA+AGG 0.320804 8.1:+43171805 None:intergenic
CTCGCCGGTGGCGCCATCTC+TGG 0.325648 8.1:-43173136 MS.gene63112:CDS
GACCCAACTGTATCTTCTTA+AGG 0.326344 8.1:-43171550 None:intergenic
GGCTTCAAATTGGGCATTGT+TGG 0.346841 8.1:-43172370 MS.gene63112:CDS
TTGCTTCAACTCGAATCTTC+TGG 0.353462 8.1:-43172035 MS.gene63112:CDS
GACAGAGCCCCTTGGTATAT+CGG 0.361316 8.1:+43171591 None:intergenic
TCACAAAGTTCTTCTTGAAC+AGG 0.361925 8.1:+43172280 None:intergenic
GATATATATGGCTTCAAATT+GGG 0.364665 8.1:-43172379 MS.gene63112:CDS
TTCGAATGTGGCGGAATTTG+CGG 0.367497 8.1:+43173000 None:intergenic
ACGTGGATTCGTACAGCTAC+TGG 0.371008 8.1:-43172921 MS.gene63112:CDS
CCATCTCTGGAAGGATCTTC+AGG 0.373900 8.1:-43173123 MS.gene63112:CDS
TCCTCCACTTCGAAGTTGAT+TGG 0.374119 8.1:-43173100 MS.gene63112:CDS
GTCTCCAAAGTTTCTAGGTT+GGG 0.375004 8.1:+43172490 None:intergenic
TATCAAGGAAGGAGAGTATA+TGG 0.380114 8.1:+43173192 None:intergenic
TTGATATTAGAACCTCTGTT+TGG 0.381309 8.1:-43173175 MS.gene63112:CDS
AAGAACCTGGAAATCTATAA+TGG 0.386603 8.1:-43172550 MS.gene63112:CDS
ATTGGTTGATTTCAACCTCT+TGG 0.387278 8.1:+43172426 None:intergenic
CGACAGGTTGAGTAGTTTAC+CGG 0.402316 8.1:-43173228 MS.gene63112:CDS
AGCAAACACTGCAGTCTTAC+GGG 0.407962 8.1:-43172622 MS.gene63112:CDS
CCTCTTGGTTGATTCCAGCT+TGG 0.410171 8.1:+43172441 None:intergenic
AATTCTGGATAAATTAGAAC+AGG 0.415552 8.1:+43172091 None:intergenic
ATATCCTTCCATGTGAATAT+AGG 0.416098 8.1:+43171744 None:intergenic
TTCGAAAGTTGAGTTTCTGC+TGG 0.423667 8.1:-43172983 MS.gene63112:CDS
TAGCAAACACTGCAGTCTTA+CGG 0.425626 8.1:-43172623 MS.gene63112:CDS
GTTGGGACAGTTAGAGAGAA+AGG 0.431562 8.1:+43172507 None:intergenic
CAAGAACTGTTTCTCTATCC+AGG 0.433231 8.1:-43172888 MS.gene63112:CDS
TCCCATGTTCTTAAAGGTGA+TGG 0.457043 8.1:+43171811 None:intergenic
CTGTCCCAACCTAGAAACTT+TGG 0.460663 8.1:-43172494 MS.gene63112:CDS
CCTCCACTTCGAAGTTGATT+GGG 0.461697 8.1:-43173099 MS.gene63112:CDS
TCGACAAATTCACTTTCAGC+TGG 0.465991 8.1:+43172304 None:intergenic
TACACAAGAGGCTCCCAAGC+TGG 0.470939 8.1:-43172455 MS.gene63112:CDS
CCTTCCAGAGATGGCGCCAC+CGG 0.475098 8.1:+43173132 None:intergenic
AAACAGAGGTTCTAATATCA+AGG 0.478753 8.1:+43173177 None:intergenic
ATTTCCAGGTTCTTGAGTGA+TGG 0.486096 8.1:+43172559 None:intergenic
AGGTGGGATTTGAGACATCT+AGG 0.491228 8.1:+43171769 None:intergenic
CACTGTAACGGCGATGGCGC+CGG 0.494222 8.1:-43173327 None:intergenic
GATAGAGAAACAGTTCTTGA+AGG 0.501826 8.1:+43172892 None:intergenic
CAATTCATCAAGAGCAGAGG+AGG 0.502785 8.1:+43172846 None:intergenic
AGTATTAATTCAGTGGAGCC+TGG 0.502841 8.1:+43172870 None:intergenic
ATTCACATGGAAGGATATCA+AGG 0.509844 8.1:-43171739 MS.gene63112:CDS
CTTCCATGTGAATATAGGTC+AGG 0.517916 8.1:+43171749 None:intergenic
CACCTTAAGAAGATACAGTT+GGG 0.520063 8.1:+43171548 None:intergenic
CCCAATCAACTTCGAAGTGG+AGG 0.520276 8.1:+43173099 None:intergenic
TGGCAACTTTCATAGTATGA+TGG 0.521876 8.1:-43172350 MS.gene63112:CDS
TACGGGTGGAGTTGAAATGA+AGG 0.523095 8.1:-43172605 MS.gene63112:CDS
AGTCTCCAAAGTTTCTAGGT+TGG 0.527752 8.1:+43172489 None:intergenic
TTTGCGTCATTCTCTATCAA+AGG 0.529706 8.1:-43172236 MS.gene63112:intron
ATATGGCACAGGAGTGAGTC+CGG 0.532653 8.1:+43173209 None:intergenic
GAAGATTCGAGTTGAAGCAA+GGG 0.537525 8.1:+43172038 None:intergenic
ACTGCACGTGAAACTATCAT+TGG 0.539709 8.1:+43172408 None:intergenic
CAGTTGGGTCAAATTTAAGC+TGG 0.540545 8.1:+43171563 None:intergenic
TCGTTTCCTATTTCTTTCCG+TGG 0.541330 8.1:+43173278 None:intergenic
GGAAGGAGAGTATATGGCAC+AGG 0.542272 8.1:+43173198 None:intergenic
CGACAAATTCACTTTCAGCT+GGG 0.542604 8.1:+43172305 None:intergenic
CGTGGATTCGTACAGCTACT+GGG 0.542675 8.1:-43172920 MS.gene63112:CDS
GCACAAATCTCGTCTCCCTC+CGG 0.543818 8.1:-43172824 MS.gene63112:intron
AGAAGATTCGAGTTGAAGCA+AGG 0.546335 8.1:+43172037 None:intergenic
GAGAAACAGTTCTTGAAGGT+GGG 0.546876 8.1:+43172896 None:intergenic
AACCATCACCTTTAAGAACA+TGG 0.553947 8.1:-43171813 MS.gene63112:CDS
CAATGATTGTGAATTTCAAG+AGG 0.554921 8.1:-43172955 MS.gene63112:CDS
TCGAAAGTTGAGTTTCTGCT+GGG 0.559786 8.1:-43172982 MS.gene63112:CDS
GTTCCACCACTCACACCGAC+AGG 0.560901 8.1:-43173244 MS.gene63112:CDS
CCTGAAGATCCTTCCAGAGA+TGG 0.565519 8.1:+43173123 None:intergenic
TCACCTTAAGAAGATACAGT+TGG 0.569009 8.1:+43171547 None:intergenic
CCGGTGGCGCCATCTCTGGA+AGG 0.569807 8.1:-43173132 MS.gene63112:CDS
CACAAAGTTCTTCTTGAACA+GGG 0.571138 8.1:+43172281 None:intergenic
CCATGTGAATATAGGTCAGG+TGG 0.571828 8.1:+43171752 None:intergenic
AGAGAAACAGTTCTTGAAGG+TGG 0.574727 8.1:+43172895 None:intergenic
AGGAGGGAGTATTAATTCAG+TGG 0.576903 8.1:+43172863 None:intergenic
AGAAACAGTTCTTGAAGGTG+GGG 0.578480 8.1:+43172897 None:intergenic
CAAAACGACGACGGAAACCA+CGG 0.582052 8.1:-43173295 MS.gene63112:CDS
GACAAATTCACTTTCAGCTG+GGG 0.584115 8.1:+43172306 None:intergenic
AAGAGGAATGTGCTGAAACG+TGG 0.586476 8.1:-43172938 MS.gene63112:CDS
ATTAGAACAGGGGCGTGAAG+TGG 0.587745 8.1:+43172103 None:intergenic
AGAGGTTCTAATATCAAGGA+AGG 0.592587 8.1:+43173181 None:intergenic
ACCATCACCTTTAAGAACAT+GGG 0.597069 8.1:-43171812 MS.gene63112:CDS
GTTCAAGAAGAACTTTGTGA+TGG 0.598781 8.1:-43172277 MS.gene63112:CDS
TGGCAGTTGACAGAGCCCCT+TGG 0.599355 8.1:+43171583 None:intergenic
GATTGGGAAAATCCGACGGA+AGG 0.600470 8.1:-43173083 MS.gene63112:CDS
GAATGTGGCGGAATTTGCGG+AGG 0.603553 8.1:+43173003 None:intergenic
AAGATTAACCGATATACCAA+GGG 0.609206 8.1:-43171599 MS.gene63112:CDS
CCACCTGACCTATATTCACA+TGG 0.613292 8.1:-43171752 MS.gene63112:CDS
CGATGAGCCTCGTATCTCGC+CGG 0.614248 8.1:-43173151 MS.gene63112:CDS
TTTCCCAATCAACTTCGAAG+TGG 0.616331 8.1:+43173096 None:intergenic
AGAAACTCAACTTTCGAATG+TGG 0.616352 8.1:+43172988 None:intergenic
AAAGATTAACCGATATACCA+AGG 0.616862 8.1:-43171600 MS.gene63112:CDS
AAAGGAAGCTACTGAATCCA+CGG 0.619067 8.1:+43172525 None:intergenic
AACTCAACTTTCGAATGTGG+CGG 0.619158 8.1:+43172991 None:intergenic
CTGACCTATATTCACATGGA+AGG 0.622931 8.1:-43171748 MS.gene63112:CDS
ACTCAACCTGTCGGTGTGAG+TGG 0.625108 8.1:+43173238 None:intergenic
GTGCAATTCATCAAGAGCAG+AGG 0.625216 8.1:+43172843 None:intergenic
CAACCTGTCGGTGTGAGTGG+TGG 0.628836 8.1:+43173241 None:intergenic
CATGTGAATATAGGTCAGGT+GGG 0.630464 8.1:+43171753 None:intergenic
GGCGCCACCGGCGAGATACG+AGG 0.635768 8.1:+43173144 None:intergenic
AATGTGGCGGAATTTGCGGA+GGG 0.635971 8.1:+43173004 None:intergenic
TGAGCCTCGTATCTCGCCGG+TGG 0.644301 8.1:-43173148 MS.gene63112:CDS
CGGAAAGAAATAGGAAACGA+CGG 0.651765 8.1:-43173275 MS.gene63112:CDS
AATTCATCAAGAGCAGAGGA+GGG 0.660008 8.1:+43172847 None:intergenic
ATTCTGGATAAATTAGAACA+GGG 0.667461 8.1:+43172092 None:intergenic
CTAGGAACTGTTGTTGACTG+TGG 0.669916 8.1:+43171787 None:intergenic
TTCTGGATAAATTAGAACAG+GGG 0.670469 8.1:+43172093 None:intergenic
AGTTGATTGGGAAAATCCGA+CGG 0.671487 8.1:-43173087 MS.gene63112:CDS
CGGTAAACTACTCAACCTGT+CGG 0.684756 8.1:+43173229 None:intergenic
TCTCATAATTAAGAGCAACA+AGG 0.696442 8.1:-43171978 MS.gene63112:intron
GAGGCTCATCGTCCAAACAG+AGG 0.700996 8.1:+43173163 None:intergenic
AAAGAAATAGGAAACGACGG+CGG 0.704658 8.1:-43173272 MS.gene63112:CDS
CCAAGCTGGAATCAACCAAG+AGG 0.707752 8.1:-43172441 MS.gene63112:CDS
AAACACTGCAGTCTTACGGG+TGG 0.710565 8.1:-43172619 MS.gene63112:CDS
AATTAATGTCAAAACGACGA+CGG 0.713597 8.1:-43173304 MS.gene63112:CDS
AGATTAACCGATATACCAAG+GGG 0.738387 8.1:-43171598 MS.gene63112:CDS
GGAAATCTATAATGGCACCG+TGG 0.797009 8.1:-43172542 MS.gene63112:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAATTCAATCAATCTT+TGG - chr8.1:43172926-43172945 MS.gene63112:CDS 20.0%
!! TATATAATAACAACAAGTGA+TGG + chr8.1:43172733-43172752 None:intergenic 20.0%
!! TCAAAAAATTCAATAGTTTC+TGG - chr8.1:43171808-43171827 MS.gene63112:CDS 20.0%
! AATTCTGGATAAATTAGAAC+AGG + chr8.1:43172778-43172797 None:intergenic 25.0%
! ATTCTGGATAAATTAGAACA+GGG + chr8.1:43172777-43172796 None:intergenic 25.0%
! GATATATATGGCTTCAAATT+GGG - chr8.1:43172487-43172506 MS.gene63112:CDS 25.0%
! TGATATATATGGCTTCAAAT+TGG - chr8.1:43172486-43172505 MS.gene63112:CDS 25.0%
!! ATTTTGCCATAATAGATTAC+CGG + chr8.1:43172064-43172083 None:intergenic 25.0%
!! GATTTTTGTTGATACTTCAA+TGG - chr8.1:43173216-43173235 MS.gene63112:CDS 25.0%
!! TGCAGTTACTTTGATATATA+TGG - chr8.1:43172475-43172494 MS.gene63112:CDS 25.0%
!! TTAATAGTGGAAATGAAAAG+TGG - chr8.1:43172176-43172195 MS.gene63112:intron 25.0%
!! TTGTTATTATATACAAGCAG+TGG - chr8.1:43172740-43172759 MS.gene63112:intron 25.0%
!!! AAAGATGAAAACACTGATTT+TGG - chr8.1:43172100-43172119 MS.gene63112:CDS 25.0%
!!! AAGGTGAAGTTTTAACTTTA+TGG - chr8.1:43172649-43172668 MS.gene63112:intron 25.0%
!!! CATTTGCTGAATATATTTTG+AGG - chr8.1:43173167-43173186 MS.gene63112:CDS 25.0%
!!! TTGACAAAGTGTTTTAATAG+TGG - chr8.1:43172163-43172182 MS.gene63112:intron 25.0%
AAAGATTAACCGATATACCA+AGG - chr8.1:43173266-43173285 MS.gene63112:CDS 30.0%
AAGAACCTGGAAATCTATAA+TGG - chr8.1:43172316-43172335 MS.gene63112:CDS 30.0%
AAGATTAACCGATATACCAA+GGG - chr8.1:43173267-43173286 MS.gene63112:CDS 30.0%
AATTAATGTCAAAACGACGA+CGG - chr8.1:43171562-43171581 MS.gene63112:CDS 30.0%
ATATCCTTCCATGTGAATAT+AGG + chr8.1:43173125-43173144 None:intergenic 30.0%
CAATGATTGTGAATTTCAAG+AGG - chr8.1:43171911-43171930 MS.gene63112:intron 30.0%
TCTCATAATTAAGAGCAACA+AGG - chr8.1:43172888-43172907 MS.gene63112:CDS 30.0%
TGATCTAATTGACGAAATTC+TGG + chr8.1:43172793-43172812 None:intergenic 30.0%
TTCTGGATAAATTAGAACAG+GGG + chr8.1:43172776-43172795 None:intergenic 30.0%
TTGATATTAGAACCTCTGTT+TGG - chr8.1:43171691-43171710 MS.gene63112:CDS 30.0%
! AAACAGAGGTTCTAATATCA+AGG + chr8.1:43171692-43171711 None:intergenic 30.0%
! AGTGTTTGCTAAAAATAGTC+AGG + chr8.1:43172234-43172253 None:intergenic 30.0%
!! GCTGAATATATTTTGAGGAA+CGG - chr8.1:43173172-43173191 MS.gene63112:CDS 30.0%
ACAAGTATACATGTGAGTCA+TGG - chr8.1:43173001-43173020 MS.gene63112:CDS 35.0%
AGAAACTCAACTTTCGAATG+TGG + chr8.1:43171881-43171900 None:intergenic 35.0%
AGAAAGTCTCCAAAGTTTCT+AGG + chr8.1:43172384-43172403 None:intergenic 35.0%
AGATTAACCGATATACCAAG+GGG - chr8.1:43173268-43173287 MS.gene63112:CDS 35.0%
ATTCACATGGAAGGATATCA+AGG - chr8.1:43173127-43173146 MS.gene63112:CDS 35.0%
CACAAAGTTCTTCTTGAACA+GGG + chr8.1:43172588-43172607 None:intergenic 35.0%
GATAGAGAAACAGTTCTTGA+AGG + chr8.1:43171977-43171996 None:intergenic 35.0%
GTACAAAACTACACCTTTGA+TGG + chr8.1:43172700-43172719 None:intergenic 35.0%
GTTCAAGAAGAACTTTGTGA+TGG - chr8.1:43172589-43172608 MS.gene63112:CDS 35.0%
TCACAAAGTTCTTCTTGAAC+AGG + chr8.1:43172589-43172608 None:intergenic 35.0%
TGGCAACTTTCATAGTATGA+TGG - chr8.1:43172516-43172535 MS.gene63112:CDS 35.0%
TTTGCGTCATTCTCTATCAA+AGG - chr8.1:43172630-43172649 MS.gene63112:intron 35.0%
! AACCATCACCTTTAAGAACA+TGG - chr8.1:43173053-43173072 MS.gene63112:CDS 35.0%
! ACCATCACCTTTAAGAACAT+GGG - chr8.1:43173054-43173073 MS.gene63112:CDS 35.0%
! AGAGGTTCTAATATCAAGGA+AGG + chr8.1:43171688-43171707 None:intergenic 35.0%
! ATTGGTTGATTTCAACCTCT+TGG + chr8.1:43172443-43172462 None:intergenic 35.0%
! TATCAAGGAAGGAGAGTATA+TGG + chr8.1:43171677-43171696 None:intergenic 35.0%
! TTTCTTTTGCGATACACAAG+AGG - chr8.1:43172399-43172418 MS.gene63112:CDS 35.0%
! TTTGTGTCATTGACCATCAA+AGG - chr8.1:43172684-43172703 MS.gene63112:intron 35.0%
!! CGTCGTTTTGACATTAATTC+CGG + chr8.1:43171561-43171580 None:intergenic 35.0%
!!! AATTTTTTGAAGCCTTCCGT+CGG + chr8.1:43171798-43171817 None:intergenic 35.0%
AAAGAAATAGGAAACGACGG+CGG - chr8.1:43171594-43171613 MS.gene63112:CDS 40.0%
AAAGGAAGCTACTGAATCCA+CGG + chr8.1:43172344-43172363 None:intergenic 40.0%
AACTCAACTTTCGAATGTGG+CGG + chr8.1:43171878-43171897 None:intergenic 40.0%
AATTCATCAAGAGCAGAGGA+GGG + chr8.1:43172022-43172041 None:intergenic 40.0%
ACTGCACGTGAAACTATCAT+TGG + chr8.1:43172461-43172480 None:intergenic 40.0%
AGAAACAGTTCTTGAAGGTG+GGG + chr8.1:43171972-43171991 None:intergenic 40.0%
AGAGAAACAGTTCTTGAAGG+TGG + chr8.1:43171974-43171993 None:intergenic 40.0%
AGTATTAATTCAGTGGAGCC+TGG + chr8.1:43171999-43172018 None:intergenic 40.0%
AGTTGATTGGGAAAATCCGA+CGG - chr8.1:43171779-43171798 MS.gene63112:CDS 40.0%
ATTTCCAGGTTCTTGAGTGA+TGG + chr8.1:43172310-43172329 None:intergenic 40.0%
CAGTTGGGTCAAATTTAAGC+TGG + chr8.1:43173306-43173325 None:intergenic 40.0%
CATGTGAATATAGGTCAGGT+GGG + chr8.1:43173116-43173135 None:intergenic 40.0%
CGACAAATTCACTTTCAGCT+GGG + chr8.1:43172564-43172583 None:intergenic 40.0%
CGGAAAGAAATAGGAAACGA+CGG - chr8.1:43171591-43171610 MS.gene63112:CDS 40.0%
CTGACCTATATTCACATGGA+AGG - chr8.1:43173118-43173137 MS.gene63112:CDS 40.0%
CTTCCATGTGAATATAGGTC+AGG + chr8.1:43173120-43173139 None:intergenic 40.0%
GACAAATTCACTTTCAGCTG+GGG + chr8.1:43172563-43172582 None:intergenic 40.0%
GAGAAACAGTTCTTGAAGGT+GGG + chr8.1:43171973-43171992 None:intergenic 40.0%
TAGCAAACACTGCAGTCTTA+CGG - chr8.1:43172243-43172262 MS.gene63112:CDS 40.0%
TCCCATGTTCTTAAAGGTGA+TGG + chr8.1:43173058-43173077 None:intergenic 40.0%
TCGAAAGTTGAGTTTCTGCT+GGG - chr8.1:43171884-43171903 MS.gene63112:intron 40.0%
TCGACAAATTCACTTTCAGC+TGG + chr8.1:43172565-43172584 None:intergenic 40.0%
TGCCATAATAGATTACCGGA+GGG + chr8.1:43172060-43172079 None:intergenic 40.0%
TTCGAAAGTTGAGTTTCTGC+TGG - chr8.1:43171883-43171902 MS.gene63112:intron 40.0%
TTGCCATAATAGATTACCGG+AGG + chr8.1:43172061-43172080 None:intergenic 40.0%
TTGCTTCAACTCGAATCTTC+TGG - chr8.1:43172831-43172850 MS.gene63112:CDS 40.0%
TTTCCCAATCAACTTCGAAG+TGG + chr8.1:43171773-43171792 None:intergenic 40.0%
! AGTCTCCAAAGTTTCTAGGT+TGG + chr8.1:43172380-43172399 None:intergenic 40.0%
! CAAGAACTGTTTCTCTATCC+AGG - chr8.1:43171978-43171997 MS.gene63112:intron 40.0%
! GTCTCCAAAGTTTCTAGGTT+GGG + chr8.1:43172379-43172398 None:intergenic 40.0%
! TCGTTTCCTATTTCTTTCCG+TGG + chr8.1:43171591-43171610 None:intergenic 40.0%
! TTTTCCATCACTCAAGAACC+TGG - chr8.1:43172303-43172322 MS.gene63112:CDS 40.0%
!! AGAAGATTCGAGTTGAAGCA+AGG + chr8.1:43172832-43172851 None:intergenic 40.0%
!! AGGAGGGAGTATTAATTCAG+TGG + chr8.1:43172006-43172025 None:intergenic 40.0%
!! GAAGATTCGAGTTGAAGCAA+GGG + chr8.1:43172831-43172850 None:intergenic 40.0%
!! TTTGAGGAACGGACTTGTTT+TGG - chr8.1:43173183-43173202 MS.gene63112:CDS 40.0%
AAGAGGAATGTGCTGAAACG+TGG - chr8.1:43171928-43171947 MS.gene63112:intron 45.0%
AGCAAACACTGCAGTCTTAC+GGG - chr8.1:43172244-43172263 MS.gene63112:CDS 45.0%
CAATTCATCAAGAGCAGAGG+AGG + chr8.1:43172023-43172042 None:intergenic 45.0%
CCACCTGACCTATATTCACA+TGG - chr8.1:43173114-43173133 MS.gene63112:CDS 45.0%
CCATGTGAATATAGGTCAGG+TGG + chr8.1:43173117-43173136 None:intergenic 45.0%
CGGAAACCACGGAAAGAAAT+AGG - chr8.1:43171582-43171601 MS.gene63112:CDS 45.0%
CGGTAAACTACTCAACCTGT+CGG + chr8.1:43171640-43171659 None:intergenic 45.0%
CTCCCTCCGGTAATCTATTA+TGG - chr8.1:43172055-43172074 MS.gene63112:CDS 45.0%
CTGTCCCAACCTAGAAACTT+TGG - chr8.1:43172372-43172391 MS.gene63112:CDS 45.0%
GGAAATCTATAATGGCACCG+TGG - chr8.1:43172324-43172343 MS.gene63112:CDS 45.0%
GTGCAATTCATCAAGAGCAG+AGG + chr8.1:43172026-43172045 None:intergenic 45.0%
GTTGGGACAGTTAGAGAGAA+AGG + chr8.1:43172362-43172381 None:intergenic 45.0%
TACGGGTGGAGTTGAAATGA+AGG - chr8.1:43172261-43172280 MS.gene63112:CDS 45.0%
TGTGGCTCCCATGTTCTTAA+AGG + chr8.1:43173064-43173083 None:intergenic 45.0%
! AGGTGGGATTTGAGACATCT+AGG + chr8.1:43173100-43173119 None:intergenic 45.0%
! CCTCCACTTCGAAGTTGATT+GGG - chr8.1:43171767-43171786 MS.gene63112:CDS 45.0%
! CGACAGGTTGAGTAGTTTAC+CGG - chr8.1:43171638-43171657 MS.gene63112:CDS 45.0%
! CTAGGAACTGTTGTTGACTG+TGG + chr8.1:43173082-43173101 None:intergenic 45.0%
! CTCTTGGTTGATTCCAGCTT+GGG + chr8.1:43172427-43172446 None:intergenic 45.0%
! GGCTTCAAATTGGGCATTGT+TGG - chr8.1:43172496-43172515 MS.gene63112:CDS 45.0%
! TCCTCCACTTCGAAGTTGAT+TGG - chr8.1:43171766-43171785 MS.gene63112:CDS 45.0%
! TTCGAATGTGGCGGAATTTG+CGG + chr8.1:43171869-43171888 None:intergenic 45.0%
!! CGGTGCCATTATAGATTTCC+AGG + chr8.1:43172324-43172343 None:intergenic 45.0%
AAACACTGCAGTCTTACGGG+TGG - chr8.1:43172247-43172266 MS.gene63112:CDS 50.0%
ACGTGGATTCGTACAGCTAC+TGG - chr8.1:43171945-43171964 MS.gene63112:intron 50.0%
ATATGGCACAGGAGTGAGTC+CGG + chr8.1:43171660-43171679 None:intergenic 50.0%
CAAAACGACGACGGAAACCA+CGG - chr8.1:43171571-43171590 MS.gene63112:CDS 50.0%
CCAAGCTGGAATCAACCAAG+AGG - chr8.1:43172425-43172444 MS.gene63112:CDS 50.0%
CCCAATCAACTTCGAAGTGG+AGG + chr8.1:43171770-43171789 None:intergenic 50.0%
CCTACCAGCAACAAAGGACA+GGG + chr8.1:43173030-43173049 None:intergenic 50.0%
CCTGAAGATCCTTCCAGAGA+TGG + chr8.1:43171746-43171765 None:intergenic 50.0%
CGTGGATTCGTACAGCTACT+GGG - chr8.1:43171946-43171965 MS.gene63112:intron 50.0%
GACAGAGCCCCTTGGTATAT+CGG + chr8.1:43173278-43173297 None:intergenic 50.0%
GATTGGGAAAATCCGACGGA+AGG - chr8.1:43171783-43171802 MS.gene63112:CDS 50.0%
GTTCCTCCTACCAGCAACAA+AGG + chr8.1:43173036-43173055 None:intergenic 50.0%
TCCTACCAGCAACAAAGGAC+AGG + chr8.1:43173031-43173050 None:intergenic 50.0%
TGTCCTTTGTTGCTGGTAGG+AGG - chr8.1:43173030-43173049 MS.gene63112:CDS 50.0%
! AATGTGGCGGAATTTGCGGA+GGG + chr8.1:43171865-43171884 None:intergenic 50.0%
! ATTAGAACAGGGGCGTGAAG+TGG + chr8.1:43172766-43172785 None:intergenic 50.0%
! CCATCTCTGGAAGGATCTTC+AGG - chr8.1:43171743-43171762 MS.gene63112:CDS 50.0%
! CCTCTTGGTTGATTCCAGCT+TGG + chr8.1:43172428-43172447 None:intergenic 50.0%
! GGAAGGAGAGTATATGGCAC+AGG + chr8.1:43171671-43171690 None:intergenic 50.0%
ACTCAACCTGTCGGTGTGAG+TGG + chr8.1:43171631-43171650 None:intergenic 55.0%
CCCTGTCCTTTGTTGCTGGT+AGG - chr8.1:43173027-43173046 MS.gene63112:CDS 55.0%
GAGGCTCATCGTCCAAACAG+AGG + chr8.1:43171706-43171725 None:intergenic 55.0%
GCACAAATCTCGTCTCCCTC+CGG - chr8.1:43172042-43172061 MS.gene63112:CDS 55.0%
GTGTCCCTGTCCTTTGTTGC+TGG - chr8.1:43173023-43173042 MS.gene63112:CDS 55.0%
TACACAAGAGGCTCCCAAGC+TGG - chr8.1:43172411-43172430 MS.gene63112:CDS 55.0%
! GAATGTGGCGGAATTTGCGG+AGG + chr8.1:43171866-43171885 None:intergenic 55.0%
CAACCTGTCGGTGTGAGTGG+TGG + chr8.1:43171628-43171647 None:intergenic 60.0%
CGATGAGCCTCGTATCTCGC+CGG - chr8.1:43171715-43171734 MS.gene63112:CDS 60.0%
GTTCCACCACTCACACCGAC+AGG - chr8.1:43171622-43171641 MS.gene63112:CDS 60.0%
TGGCAGTTGACAGAGCCCCT+TGG + chr8.1:43173286-43173305 None:intergenic 60.0%
CCTTCCAGAGATGGCGCCAC+CGG + chr8.1:43171737-43171756 None:intergenic 65.0%
TGAGCCTCGTATCTCGCCGG+TGG - chr8.1:43171718-43171737 MS.gene63112:CDS 65.0%
CCGGTGGCGCCATCTCTGGA+AGG - chr8.1:43171734-43171753 MS.gene63112:CDS 70.0%
CTCGCCGGTGGCGCCATCTC+TGG - chr8.1:43171730-43171749 MS.gene63112:CDS 75.0%
GGCGCCACCGGCGAGATACG+AGG + chr8.1:43171725-43171744 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 43171552 43173336 43171552 ID=MS.gene63112
chr8.1 mRNA 43171552 43173336 43171552 ID=MS.gene63112.t1;Parent=MS.gene63112
chr8.1 exon 43172825 43173336 43172825 ID=MS.gene63112.t1.exon1;Parent=MS.gene63112.t1
chr8.1 CDS 43172825 43173336 43172825 ID=cds.MS.gene63112.t1;Parent=MS.gene63112.t1
chr8.1 exon 43172237 43172642 43172237 ID=MS.gene63112.t1.exon2;Parent=MS.gene63112.t1
chr8.1 CDS 43172237 43172642 43172237 ID=cds.MS.gene63112.t1;Parent=MS.gene63112.t1
chr8.1 exon 43171979 43172128 43171979 ID=MS.gene63112.t1.exon3;Parent=MS.gene63112.t1
chr8.1 CDS 43171979 43172128 43171979 ID=cds.MS.gene63112.t1;Parent=MS.gene63112.t1
chr8.1 exon 43171552 43171839 43171552 ID=MS.gene63112.t1.exon4;Parent=MS.gene63112.t1
chr8.1 CDS 43171552 43171839 43171552 ID=cds.MS.gene63112.t1;Parent=MS.gene63112.t1
Gene Sequence

>MS.gene63112

ATGGCGCCGGAATTAATGTCAAAACGACGACGGAAACCACGGAAAGAAATAGGAAACGACGGCGGAGACAGTTCCACCACTCACACCGACAGGTTGAGTAGTTTACCGGACTCACTCCTGTGCCATATACTCTCCTTCCTTGATATTAGAACCTCTGTTTGGACGATGAGCCTCGTATCTCGCCGGTGGCGCCATCTCTGGAAGGATCTTCAGGTCCTCCACTTCGAAGTTGATTGGGAAAATCCGACGGAAGGCTTCAAAAAATTCAATAGTTTCTGGAGCTTTGCATTATTCGTGAATAATGTGTTCGCCCTCCGCAAATTCCGCCACATTCGAAAGTTGAGTTTCTGCTGGGTTTACAATGATTGTGAATTTCAAGAGGAATGTGCTGAAACGTGGATTCGTACAGCTACTGGGCCCCACCTTCAAGAACTGTTTCTCTATCCAGGCTCCACTGAATTAATACTCCCTCCTCTGCTCTTGATGAATTGCACAAATCTCGTCTCCCTCCGGTAATCTATTATGGCAAAATGCAAAGTTAAAAAATAAAAGATGAAAACACTGATTTTGGTTAATTTAGCTGTTTTAAATTAATTTCTAATACTAAGAATTTGACAAAGTGTTTTAATAGTGGAAATGAAAAGTGGTAACAATACTCTTGTTTTAATGTTATAGATAACCTGACTATTTTTAGCAAACACTGCAGTCTTACGGGTGGAGTTGAAATGAAGGTTCAACATTCTTCACTTCATTTTCCATCACTCAAGAACCTGGAAATCTATAATGGCACCGTGGATTCAGTAGCTTCCTTTCTCTCTAACTGTCCCAACCTAGAAACTTTGGAGACTTTCTTTTGCGATACACAAGAGGCTCCCAAGCTGGAATCAACCAAGAGGTTGAAATCAACCAATGATAGTTTCACGTGCAGTTACTTTGATATATATGGCTTCAAATTGGGCATTGTTGGCAACTTTCATAGTATGATGGAAGCATTTGTTGATGTCTTTTCCCCAGCTGAAAGTGAATTTGTCGACCCTGTTCAAGAAGAACTTTGTGATGGTCAAGATTTAGATCTACTTTTGCGTCATTCTCTATCAAAGGTGAAGTTTTAACTTTATGGTTTAAATCTACTTTTGTGTCATTGACCATCAAAGGTGTAGTTTTGTACTAACATTGCGCCATCACTTGTTGTTATTATATACAAGCAGTGGCCACTTCACGCCCCTGTTCTAATTTATCCAGAATTTCGTCAATTAGATCATATAAAGTTCATTCTCCCTTGCTTCAACTCGAATCTTCTGGTCACTGTGCTCGATAAATGTCATATGCTTGAAGTTCTCATAATTAAGAGCAACAAGGTTCGTTCACTTCTCAAGTTTAATTCAATCAATCTTTGGTCTGTCTGTGTGTGTGTGTGTGTATGTGTGTTTGTATCTGTATAGTACACACACAAGTATACATGTGAGTCATGGTGTCCCTGTCCTTTGTTGCTGGTAGGAGGAACCATCACCTTTAAGAACATGGGAGCCACAGTCAACAACAGTTCCTAGATGTCTCAAATCCCACCTGACCTATATTCACATGGAAGGATATCAAGGATTTGAAGATGAGCTGACATTTGCTGAATATATTTTGAGGAACGGACTTGTTTTGGAGACAATGCTGATTTTTGTTGATACTTCAATGGACATAACAAATAAGTACTGTTCTGTCAAAAGATTAACCGATATACCAAGGGGCTCTGTCAACTGCCAGCTTAAATTTGACCCAACTGTATCTTCTTAA
Protein sequence

>MS.gene63112.t1

MAPELMSKRRRKPRKEIGNDGGDSSTTHTDRLSSLPDSLLCHILSFLDIRTSVWTMSLVSRRWRHLWKDLQVLHFEVDWENPTEGFKKFNSFWSFALFVNNVFALRKFRHIRKLSFCWVYNDCEFQEECAETWIRTATGPHLQELFLYPGSTELILPPLLLMNCTNLVSLRKHCSLTGGVEMKVQHSSLHFPSLKNLEIYNGTVDSVASFLSNCPNLETLETFFCDTQEAPKLESTKRLKSTNDSFTCSYFDIYGFKLGIVGNFHSMMEAFVDVFSPAESEFVDPVQEELCDGQDLDLLLRHSLSKWPLHAPVLIYPEFRQLDHIKFILPCFNSNLLVTVLDKCHMLEVLIIKSNKEEPSPLRTWEPQSTTVPRCLKSHLTYIHMEGYQGFEDELTFAEYILRNGLVLETMLIFVDTSMDITNKYCSVKRLTDIPRGSVNCQLKFDPTVSS