Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57630.t1 | KEH32529.1 | 86 | 328 | 37 | 4 | 1 | 320 | 1 | 327 | 1.90E-134 | 488.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57630.t1 | Q9SZI6 | 35.1 | 359 | 166 | 10 | 14 | 320 | 9 | 352 | 3.1e-24 | 114.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57630.t1 | A0A072URU2 | 86.0 | 328 | 37 | 4 | 1 | 320 | 1 | 327 | 1.4e-134 | 488.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene57630.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene57630 | 0.850035 | 2.20E-60 | -1.69E-46 |
| MS.gene049217 | MS.gene57630 | 0.830659 | 2.59E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene57630 | 0.833937 | 4.00E-56 | -1.69E-46 |
| MS.gene049232 | MS.gene57630 | 0.847733 | 9.59E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene57630 | 0.840443 | 8.67E-58 | -1.69E-46 |
| MS.gene049320 | MS.gene57630 | 0.828733 | 7.63E-55 | -1.69E-46 |
| MS.gene049369 | MS.gene57630 | 0.82737 | 1.62E-54 | -1.69E-46 |
| MS.gene049396 | MS.gene57630 | 0.86249 | 4.89E-64 | -1.69E-46 |
| MS.gene049609 | MS.gene57630 | 0.835361 | 1.76E-56 | -1.69E-46 |
| MS.gene049611 | MS.gene57630 | -0.803142 | 4.01E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene57630 | 0.827481 | 1.53E-54 | -1.69E-46 |
| MS.gene049634 | MS.gene57630 | -0.810206 | 1.29E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene57630 | 0.830305 | 3.16E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene57630 | 0.825183 | 5.39E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene57630 | 0.803618 | 3.20E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene57630 | 0.808046 | 3.75E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene57630 | 0.83713 | 6.23E-57 | -1.69E-46 |
| MS.gene050216 | MS.gene57630 | 0.852307 | 5.03E-61 | -1.69E-46 |
| MS.gene050323 | MS.gene57630 | 0.856116 | 4.00E-62 | -1.69E-46 |
| MS.gene050333 | MS.gene57630 | 0.816168 | 6.35E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene57630 | -0.817572 | 3.08E-52 | -1.69E-46 |
| MS.gene050444 | MS.gene57630 | 0.822701 | 2.06E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene57630 | 0.838772 | 2.36E-57 | -1.69E-46 |
| MS.gene050502 | MS.gene57630 | 0.807362 | 5.25E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene57630 | 0.845716 | 3.41E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene57630 | 0.806263 | 8.96E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene57630 | 0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene57630 | 0.842209 | 2.97E-58 | -1.69E-46 |
| MS.gene050612 | MS.gene57630 | 0.840656 | 7.63E-58 | -1.69E-46 |
| MS.gene050647 | MS.gene57630 | -0.801366 | 9.31E-49 | -1.69E-46 |
| MS.gene050662 | MS.gene57630 | 0.841447 | 4.73E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene57630 | 0.835554 | 1.57E-56 | -1.69E-46 |
| MS.gene050747 | MS.gene57630 | 0.817312 | 3.52E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene57630 | 0.850435 | 1.70E-60 | -1.69E-46 |
| MS.gene05079 | MS.gene57630 | -0.800381 | 1.48E-48 | -1.69E-46 |
| MS.gene050809 | MS.gene57630 | -0.830391 | 3.01E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene57630 | 0.845033 | 5.23E-59 | -1.69E-46 |
| MS.gene05081 | MS.gene57630 | 0.809256 | 2.07E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene57630 | 0.890767 | 7.31E-74 | -1.69E-46 |
| MS.gene050871 | MS.gene57630 | 0.891643 | 3.30E-74 | -1.69E-46 |
| MS.gene050904 | MS.gene57630 | 0.814683 | 1.36E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene57630 | 0.809384 | 1.94E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene57630 | 0.803411 | 3.53E-49 | -1.69E-46 |
| MS.gene051044 | MS.gene57630 | -0.805516 | 1.29E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene57630 | -0.84834 | 6.52E-60 | -1.69E-46 |
| MS.gene051127 | MS.gene57630 | -0.815309 | 9.87E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene57630 | -0.826223 | 3.05E-54 | -1.69E-46 |
| MS.gene051268 | MS.gene57630 | 0.836108 | 1.13E-56 | -1.69E-46 |
| MS.gene051509 | MS.gene57630 | 0.806604 | 7.59E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene57630 | -0.813956 | 1.97E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene57630 | 0.830747 | 2.47E-55 | -1.69E-46 |
| MS.gene051694 | MS.gene57630 | 0.80454 | 2.06E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene57630 | 0.840157 | 1.03E-57 | -1.69E-46 |
| MS.gene051810 | MS.gene57630 | 0.801232 | 9.92E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene57630 | 0.816677 | 4.89E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene57630 | 0.840227 | 9.87E-58 | -1.69E-46 |
| MS.gene051874 | MS.gene57630 | 0.963746 | 1.83E-122 | -1.69E-46 |
| MS.gene052164 | MS.gene57630 | 0.844012 | 9.84E-59 | -1.69E-46 |
| MS.gene05240 | MS.gene57630 | -0.815252 | 1.02E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene57630 | 0.801133 | 1.04E-48 | -1.69E-46 |
| MS.gene052486 | MS.gene57630 | 0.807272 | 5.48E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene57630 | 0.802203 | 6.27E-49 | -1.69E-46 |
| MS.gene052504 | MS.gene57630 | 0.828471 | 8.83E-55 | -1.69E-46 |
| MS.gene052506 | MS.gene57630 | 0.843535 | 1.32E-58 | -1.69E-46 |
| MS.gene052805 | MS.gene57630 | -0.829649 | 4.57E-55 | -1.69E-46 |
| MS.gene052822 | MS.gene57630 | 0.853005 | 3.18E-61 | -1.69E-46 |
| MS.gene052823 | MS.gene57630 | 0.800158 | 1.64E-48 | -1.69E-46 |
| MS.gene052870 | MS.gene57630 | 0.833873 | 4.15E-56 | -1.69E-46 |
| MS.gene052872 | MS.gene57630 | 0.841966 | 3.45E-58 | -1.69E-46 |
| MS.gene052916 | MS.gene57630 | 0.809074 | 2.26E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene57630 | 0.850936 | 1.23E-60 | -1.69E-46 |
| MS.gene053104 | MS.gene57630 | 0.813357 | 2.67E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene57630 | 0.830305 | 3.17E-55 | -1.69E-46 |
| MS.gene053213 | MS.gene57630 | 0.809276 | 2.05E-50 | -1.69E-46 |
| MS.gene053284 | MS.gene57630 | 0.807234 | 5.58E-50 | -1.69E-46 |
| MS.gene053285 | MS.gene57630 | 0.808236 | 3.42E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene57630 | 0.806124 | 9.58E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene57630 | -0.85449 | 1.19E-61 | -1.69E-46 |
| MS.gene053449 | MS.gene57630 | 0.853745 | 1.95E-61 | -1.69E-46 |
| MS.gene053479 | MS.gene57630 | 0.847843 | 8.95E-60 | -1.69E-46 |
| MS.gene053562 | MS.gene57630 | -0.817912 | 2.58E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene57630 | 0.858577 | 7.49E-63 | -1.69E-46 |
| MS.gene053626 | MS.gene57630 | 0.82383 | 1.12E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene57630 | 0.875169 | 3.81E-68 | -1.69E-46 |
| MS.gene053916 | MS.gene57630 | 0.868458 | 6.44E-66 | -1.69E-46 |
| MS.gene054003 | MS.gene57630 | 0.855522 | 5.96E-62 | -1.69E-46 |
| MS.gene054595 | MS.gene57630 | 0.822447 | 2.36E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene57630 | 0.806886 | 6.62E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene57630 | 0.842951 | 1.89E-58 | -1.69E-46 |
| MS.gene054706 | MS.gene57630 | -0.835108 | 2.03E-56 | -1.69E-46 |
| MS.gene054708 | MS.gene57630 | -0.80164 | 8.18E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene57630 | 0.810673 | 1.03E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene57630 | 0.850473 | 1.66E-60 | -1.69E-46 |
| MS.gene054954 | MS.gene57630 | 0.835699 | 1.44E-56 | -1.69E-46 |
| MS.gene05505 | MS.gene57630 | 0.83508 | 2.07E-56 | -1.69E-46 |
| MS.gene055202 | MS.gene57630 | -0.81332 | 2.72E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene57630 | 0.817431 | 3.31E-52 | -1.69E-46 |
| MS.gene055224 | MS.gene57630 | 0.870502 | 1.39E-66 | -1.69E-46 |
| MS.gene055289 | MS.gene57630 | 0.800585 | 1.35E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene57630 | 0.822702 | 2.06E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene57630 | 0.846027 | 2.81E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene57630 | 0.873161 | 1.82E-67 | -1.69E-46 |
| MS.gene055722 | MS.gene57630 | 0.845737 | 3.37E-59 | -1.69E-46 |
| MS.gene055748 | MS.gene57630 | 0.827205 | 1.78E-54 | -1.69E-46 |
| MS.gene055750 | MS.gene57630 | 0.837987 | 3.76E-57 | -1.69E-46 |
| MS.gene055751 | MS.gene57630 | 0.837709 | 4.43E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene57630 | 0.838963 | 2.10E-57 | -1.69E-46 |
| MS.gene05592 | MS.gene57630 | 0.849585 | 2.94E-60 | -1.69E-46 |
| MS.gene055941 | MS.gene57630 | 0.860998 | 1.40E-63 | -1.69E-46 |
| MS.gene056166 | MS.gene57630 | 0.802871 | 4.57E-49 | -1.69E-46 |
| MS.gene056283 | MS.gene57630 | 0.802036 | 6.79E-49 | -1.69E-46 |
| MS.gene056359 | MS.gene57630 | -0.800656 | 1.30E-48 | -1.69E-46 |
| MS.gene056374 | MS.gene57630 | 0.800884 | 1.17E-48 | -1.69E-46 |
| MS.gene056387 | MS.gene57630 | 0.833385 | 5.50E-56 | -1.69E-46 |
| MS.gene056422 | MS.gene57630 | 0.873281 | 1.66E-67 | -1.69E-46 |
| MS.gene056448 | MS.gene57630 | 0.808819 | 2.57E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene57630 | 0.853903 | 1.76E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene57630 | 0.829011 | 6.53E-55 | -1.69E-46 |
| MS.gene056511 | MS.gene57630 | 0.81421 | 1.73E-51 | -1.69E-46 |
| MS.gene056549 | MS.gene57630 | 0.807079 | 6.02E-50 | -1.69E-46 |
| MS.gene05664 | MS.gene57630 | 0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene57630 | 0.822216 | 2.67E-53 | -1.69E-46 |
| MS.gene05666 | MS.gene57630 | 0.810466 | 1.14E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene57630 | 0.813875 | 2.05E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene57630 | -0.826577 | 2.51E-54 | -1.69E-46 |
| MS.gene056857 | MS.gene57630 | -0.802263 | 6.10E-49 | -1.69E-46 |
| MS.gene056946 | MS.gene57630 | 0.800023 | 1.75E-48 | -1.69E-46 |
| MS.gene056947 | MS.gene57630 | 0.802637 | 5.10E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene57630 | 0.842297 | 2.82E-58 | -1.69E-46 |
| MS.gene057086 | MS.gene57630 | 0.871811 | 5.14E-67 | -1.69E-46 |
| MS.gene057331 | MS.gene57630 | 0.820445 | 6.83E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene57630 | 0.816357 | 5.77E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene57630 | 0.853739 | 1.96E-61 | -1.69E-46 |
| MS.gene057856 | MS.gene57630 | 0.857074 | 2.09E-62 | -1.69E-46 |
| MS.gene057857 | MS.gene57630 | 0.852519 | 4.38E-61 | -1.69E-46 |
| MS.gene05787 | MS.gene57630 | 0.801311 | 9.56E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene57630 | 0.877502 | 5.97E-69 | -1.69E-46 |
| MS.gene058006 | MS.gene57630 | 0.807845 | 4.14E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene57630 | -0.807665 | 4.52E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene57630 | 0.801331 | 9.47E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene57630 | 0.818356 | 2.05E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene57630 | -0.808606 | 2.85E-50 | -1.69E-46 |
| MS.gene058173 | MS.gene57630 | -0.802068 | 6.69E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene57630 | -0.816891 | 4.38E-52 | -1.69E-46 |
| MS.gene058268 | MS.gene57630 | -0.805443 | 1.33E-49 | -1.69E-46 |
| MS.gene058269 | MS.gene57630 | -0.803899 | 2.80E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene57630 | -0.806825 | 6.82E-50 | -1.69E-46 |
| MS.gene058338 | MS.gene57630 | 0.813867 | 2.06E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene57630 | 0.843253 | 1.57E-58 | -1.69E-46 |
| MS.gene058419 | MS.gene57630 | 0.841258 | 5.30E-58 | -1.69E-46 |
| MS.gene058459 | MS.gene57630 | 0.811101 | 8.29E-51 | -1.69E-46 |
| MS.gene058603 | MS.gene57630 | -0.80015 | 1.65E-48 | -1.69E-46 |
| MS.gene058723 | MS.gene57630 | 0.804954 | 1.69E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene57630 | 0.834774 | 2.47E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene57630 | 0.832764 | 7.85E-56 | -1.69E-46 |
| MS.gene058978 | MS.gene57630 | -0.834689 | 2.59E-56 | -1.69E-46 |
| MS.gene059022 | MS.gene57630 | 0.830204 | 3.35E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene57630 | 0.854235 | 1.41E-61 | -1.69E-46 |
| MS.gene05913 | MS.gene57630 | 0.865582 | 5.32E-65 | -1.69E-46 |
| MS.gene059305 | MS.gene57630 | 0.834352 | 3.15E-56 | -1.69E-46 |
| MS.gene05934 | MS.gene57630 | 0.812813 | 3.51E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene57630 | 0.839782 | 1.29E-57 | -1.69E-46 |
| MS.gene059368 | MS.gene57630 | 0.823299 | 1.49E-53 | -1.69E-46 |
| MS.gene059667 | MS.gene57630 | 0.810434 | 1.15E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene57630 | 0.817787 | 2.75E-52 | -1.69E-46 |
| MS.gene059699 | MS.gene57630 | -0.817941 | 2.54E-52 | -1.69E-46 |
| MS.gene059703 | MS.gene57630 | -0.823921 | 1.07E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene57630 | 0.831939 | 1.26E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene57630 | 0.814493 | 1.50E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene57630 | 0.875354 | 3.29E-68 | -1.69E-46 |
| MS.gene059902 | MS.gene57630 | 0.831065 | 2.06E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene57630 | 0.843119 | 1.70E-58 | -1.69E-46 |
| MS.gene060372 | MS.gene57630 | 0.803192 | 3.92E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene57630 | 0.831342 | 1.76E-55 | -1.69E-46 |
| MS.gene060593 | MS.gene57630 | -0.822498 | 2.29E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene57630 | -0.814717 | 1.34E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene57630 | 0.825107 | 5.61E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene57630 | 0.860329 | 2.23E-63 | -1.69E-46 |
| MS.gene060778 | MS.gene57630 | 0.833118 | 6.41E-56 | -1.69E-46 |
| MS.gene06077 | MS.gene57630 | 0.826821 | 2.20E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene57630 | 0.810265 | 1.26E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene57630 | 0.829414 | 5.22E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene57630 | 0.824901 | 6.28E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene57630 | 0.852653 | 4.01E-61 | -1.69E-46 |
| MS.gene06092 | MS.gene57630 | 0.813388 | 2.62E-51 | -1.69E-46 |
| MS.gene06097 | MS.gene57630 | 0.839917 | 1.19E-57 | -1.69E-46 |
| MS.gene060982 | MS.gene57630 | 0.863176 | 3.00E-64 | -1.69E-46 |
| MS.gene061150 | MS.gene57630 | 0.807721 | 4.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57630.t1 | MTR_4g126350 | 91.768 | 328 | 18 | 4 | 1 | 320 | 1 | 327 | 0.0 | 520 |
| MS.gene57630.t1 | MTR_2g038720 | 45.897 | 329 | 131 | 14 | 1 | 320 | 1 | 291 | 6.47e-47 | 160 |
| MS.gene57630.t1 | MTR_1g016170 | 44.667 | 150 | 58 | 6 | 122 | 249 | 108 | 254 | 1.07e-25 | 104 |
| MS.gene57630.t1 | MTR_4g121110 | 33.784 | 148 | 72 | 4 | 172 | 319 | 22 | 143 | 3.55e-17 | 77.4 |
| MS.gene57630.t1 | MTR_7g112330 | 75.000 | 36 | 9 | 0 | 180 | 215 | 22 | 57 | 2.17e-14 | 69.3 |
| MS.gene57630.t1 | MTR_5g020230 | 53.448 | 58 | 27 | 0 | 159 | 216 | 101 | 158 | 5.05e-14 | 70.9 |
| MS.gene57630.t1 | MTR_8g077510 | 70.270 | 37 | 11 | 0 | 180 | 216 | 125 | 161 | 1.85e-12 | 66.2 |
| MS.gene57630.t1 | MTR_1g116010 | 39.506 | 81 | 42 | 2 | 174 | 249 | 158 | 236 | 9.39e-12 | 64.3 |
| MS.gene57630.t1 | MTR_2g094600 | 46.377 | 69 | 36 | 1 | 148 | 215 | 183 | 251 | 4.11e-11 | 63.2 |
| MS.gene57630.t1 | MTR_5g021340 | 40.244 | 82 | 44 | 2 | 180 | 258 | 300 | 379 | 5.19e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57630.t1 | AT4G26150 | 42.105 | 247 | 117 | 6 | 91 | 320 | 115 | 352 | 1.62e-38 | 140 |
| MS.gene57630.t1 | AT5G56860 | 35.938 | 256 | 107 | 9 | 14 | 213 | 9 | 263 | 1.45e-22 | 97.4 |
| MS.gene57630.t1 | AT5G49300 | 36.424 | 151 | 57 | 4 | 169 | 319 | 27 | 138 | 6.95e-18 | 79.3 |
| MS.gene57630.t1 | AT5G26930 | 75.610 | 41 | 10 | 0 | 177 | 217 | 23 | 63 | 4.03e-17 | 76.6 |
| MS.gene57630.t1 | AT3G06740 | 37.778 | 135 | 51 | 5 | 182 | 316 | 43 | 144 | 1.57e-15 | 73.2 |
| MS.gene57630.t1 | AT4G36620 | 50.769 | 65 | 25 | 1 | 180 | 237 | 75 | 139 | 7.82e-15 | 72.8 |
| MS.gene57630.t1 | AT3G50870 | 63.265 | 49 | 17 | 1 | 180 | 227 | 152 | 200 | 3.49e-14 | 72.4 |
| MS.gene57630.t1 | AT3G16870 | 70.000 | 40 | 12 | 0 | 178 | 217 | 40 | 79 | 9.10e-14 | 69.3 |
| MS.gene57630.t1 | AT4G16141 | 67.500 | 40 | 13 | 0 | 178 | 217 | 35 | 74 | 1.74e-13 | 68.6 |
| MS.gene57630.t1 | AT2G18380 | 66.667 | 45 | 14 | 1 | 176 | 219 | 88 | 132 | 2.14e-13 | 68.6 |
| MS.gene57630.t1 | AT1G08010 | 39.773 | 88 | 50 | 2 | 172 | 259 | 212 | 296 | 5.91e-13 | 68.6 |
| MS.gene57630.t1 | AT1G08010 | 39.773 | 88 | 50 | 2 | 172 | 259 | 212 | 296 | 5.91e-13 | 68.6 |
| MS.gene57630.t1 | AT1G08010 | 39.773 | 88 | 50 | 2 | 172 | 259 | 212 | 296 | 5.91e-13 | 68.6 |
| MS.gene57630.t1 | AT1G08000 | 38.636 | 88 | 50 | 2 | 172 | 259 | 210 | 293 | 2.90e-12 | 66.6 |
| MS.gene57630.t1 | AT1G08000 | 38.636 | 88 | 50 | 2 | 172 | 259 | 210 | 293 | 2.90e-12 | 66.6 |
Find 59 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATAATTATTCAACTATT+AGG | 0.137638 | 8.3:-4189983 | MS.gene57630:CDS |
| TGAACAATCAAACTCAATTT+TGG | 0.139942 | 8.3:+4189442 | None:intergenic |
| ATTAAGCTTGAGTGAGAATT+TGG | 0.175716 | 8.3:-4189333 | MS.gene57630:CDS |
| CTTCTCATGGCGTTATCTTA+TGG | 0.189112 | 8.3:-4189266 | MS.gene57630:CDS |
| GAAAATGAAGAAGAAGAATT+TGG | 0.264622 | 8.3:+4190548 | None:intergenic |
| GCTGCTGCAGCATCGGCAAT+TGG | 0.307111 | 8.3:-4189533 | MS.gene57630:CDS |
| CAATAATTATTCAACTATTA+GGG | 0.315780 | 8.3:-4189982 | MS.gene57630:CDS |
| TGATCTTGATTAAGATCAAT+AGG | 0.353074 | 8.3:+4190590 | None:intergenic |
| TTGCAGCCTCTCTCTCATCC+TGG | 0.357986 | 8.3:+4189291 | None:intergenic |
| TGCAGCCTCTCTCTCATCCT+GGG | 0.415909 | 8.3:+4189292 | None:intergenic |
| ATGTATACCTTTGGGCCTCT+TGG | 0.416802 | 8.3:+4189912 | None:intergenic |
| CATGTGGTAAGTTGTTTGTT+TGG | 0.417311 | 8.3:+4190456 | None:intergenic |
| TTAAGCTTGAGTGAGAATTT+GGG | 0.418107 | 8.3:-4189332 | MS.gene57630:CDS |
| AAGGAAGGCAAGACGTGCTT+TGG | 0.419438 | 8.3:-4189558 | MS.gene57630:CDS |
| ACACCACTAAGACCCCTCTA+TGG | 0.423028 | 8.3:-4189944 | MS.gene57630:CDS |
| CTTGATCTTGTGAGTCTAAG+AGG | 0.434136 | 8.3:+4190501 | None:intergenic |
| CCTCCATAGAGGGGTCTTAG+TGG | 0.441426 | 8.3:+4189941 | None:intergenic |
| GATGATGGTTTCTGATCAAA+CGG | 0.456924 | 8.3:-4190096 | MS.gene57630:CDS |
| TTGGTCCACTCCTCCATAGA+GGG | 0.468086 | 8.3:+4189931 | None:intergenic |
| TTTGTTTGGCAGTAATAAGA+TGG | 0.481929 | 8.3:+4190470 | None:intergenic |
| AAGAAGAATTTGGACTAGAA+AGG | 0.497380 | 8.3:+4190558 | None:intergenic |
| TTATCTTATGGATTAGTCCA+TGG | 0.502722 | 8.3:-4189254 | MS.gene57630:CDS |
| ATATTCACTCAAGTGGATCA+TGG | 0.512325 | 8.3:-4190286 | MS.gene57630:CDS |
| GAGAATAATGAAGAAGATGA+TGG | 0.517661 | 8.3:-4190111 | MS.gene57630:CDS |
| TTTGGCTGCTGCTGCAGCAT+CGG | 0.517772 | 8.3:-4189540 | MS.gene57630:CDS |
| CTTGGTCCACTCCTCCATAG+AGG | 0.517925 | 8.3:+4189930 | None:intergenic |
| TGATCTTAATTAGGTTGAGA+AGG | 0.524769 | 8.3:-4190312 | MS.gene57630:intron |
| TACTTTACCTCTTGATCATG+TGG | 0.541831 | 8.3:+4190440 | None:intergenic |
| AACACAAGCTGACAATTCGT+TGG | 0.542076 | 8.3:-4190223 | MS.gene57630:CDS |
| AAGGTTAATATTCACTCAAG+TGG | 0.542101 | 8.3:-4190293 | MS.gene57630:CDS |
| CAGTCACTTTGCAACGCATG+TGG | 0.556816 | 8.3:-4189590 | MS.gene57630:CDS |
| AATTTGGACTAGAAAGGTCA+TGG | 0.556899 | 8.3:+4190564 | None:intergenic |
| CAACTTACCACATGATCAAG+AGG | 0.559110 | 8.3:-4190447 | MS.gene57630:intron |
| GCAGCCTCTCTCTCATCCTG+GGG | 0.567150 | 8.3:+4189293 | None:intergenic |
| AGAGGCTGCAATCCTTCTCA+TGG | 0.574547 | 8.3:-4189279 | MS.gene57630:CDS |
| ATGATGGTTTCTGATCAAAC+GGG | 0.587005 | 8.3:-4190095 | MS.gene57630:CDS |
| ATGTGGGATTAGACAAAGGA+AGG | 0.591436 | 8.3:-4189573 | MS.gene57630:CDS |
| CTGCTATTATCTGTTCCTTG+TGG | 0.602551 | 8.3:+4190008 | None:intergenic |
| TGATCATGAGGATGGTACTT+CGG | 0.612710 | 8.3:-4190156 | MS.gene57630:CDS |
| CAAGAAGCTGATCATGAGGA+TGG | 0.614482 | 8.3:-4190164 | MS.gene57630:CDS |
| AGGATGGTACTTCGGTGAAG+TGG | 0.614786 | 8.3:-4190148 | MS.gene57630:CDS |
| TTGATCTTGTGAGTCTAAGA+GGG | 0.615407 | 8.3:+4190502 | None:intergenic |
| CATAAGATAACGCCATGAGA+AGG | 0.615895 | 8.3:+4189267 | None:intergenic |
| TAATCAAGAAGCTGATCATG+AGG | 0.617008 | 8.3:-4190168 | MS.gene57630:CDS |
| GAGTGGACCAAGAGGCCCAA+AGG | 0.618470 | 8.3:-4189919 | MS.gene57630:intron |
| CAATGAACTAAGCTCAACCA+TGG | 0.619076 | 8.3:+4189237 | None:intergenic |
| TCTGTTCCTTGTGGTGACAG+TGG | 0.621928 | 8.3:+4190017 | None:intergenic |
| ATGACGGACGAAGATAGATA+AGG | 0.632473 | 8.3:+4190614 | None:intergenic |
| ATTAAGATCAATAGGCATGA+CGG | 0.633382 | 8.3:+4190598 | None:intergenic |
| TGGTCCACTCCTCCATAGAG+GGG | 0.635988 | 8.3:+4189932 | None:intergenic |
| AAGACCCCTCTATGGAGGAG+TGG | 0.638844 | 8.3:-4189936 | MS.gene57630:CDS |
| GACGAAGATAGATAAGGTGG+TGG | 0.639273 | 8.3:+4190620 | None:intergenic |
| CCACTAAGACCCCTCTATGG+AGG | 0.641407 | 8.3:-4189941 | MS.gene57630:CDS |
| AGTCACTTTGCAACGCATGT+GGG | 0.651862 | 8.3:-4189589 | MS.gene57630:CDS |
| AAGCAACCACTGTCACCACA+AGG | 0.654177 | 8.3:-4190023 | MS.gene57630:CDS |
| ACGGACGAAGATAGATAAGG+TGG | 0.673417 | 8.3:+4190617 | None:intergenic |
| ACGCATGTGGGATTAGACAA+AGG | 0.678808 | 8.3:-4189577 | MS.gene57630:CDS |
| CAGCCTCTCTCTCATCCTGG+GGG | 0.685188 | 8.3:+4189294 | None:intergenic |
| CTATGGAGGAGTGGACCAAG+AGG | 0.688009 | 8.3:-4189927 | MS.gene57630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAAATTAATAAAGTAT+AGG | - | chr8.3:4190015-4190034 | MS.gene57630:CDS | 10.0% |
| !! | AAAATGTTTATTTATTTGTC+AGG | - | chr8.3:4190155-4190174 | MS.gene57630:CDS | 15.0% |
| !! | AAATTAATAAAGTATAGGTT+TGG | - | chr8.3:4190020-4190039 | MS.gene57630:CDS | 15.0% |
| !! | ACATCATCAAATTAATTAAA+GGG | + | chr8.3:4189545-4189564 | None:intergenic | 15.0% |
| !! | CAATAATTATTCAACTATTA+GGG | - | chr8.3:4189894-4189913 | MS.gene57630:intron | 15.0% |
| !! | ATCATATATATGTATACCTT+TGG | + | chr8.3:4189976-4189995 | None:intergenic | 20.0% |
| !! | CACATCATCAAATTAATTAA+AGG | + | chr8.3:4189546-4189565 | None:intergenic | 20.0% |
| !! | CATCATCAAATTAATTAAAG+GGG | + | chr8.3:4189544-4189563 | None:intergenic | 20.0% |
| !! | GCAATAATTATTCAACTATT+AGG | - | chr8.3:4189893-4189912 | MS.gene57630:intron | 20.0% |
| !! | GTTGAATTGAATCTTTAATT+TGG | + | chr8.3:4190062-4190081 | None:intergenic | 20.0% |
| !! | TCATATATATGTATACCTTT+GGG | + | chr8.3:4189975-4189994 | None:intergenic | 20.0% |
| !! | TTATAATTACGAATCAAACT+CGG | - | chr8.3:4190110-4190129 | MS.gene57630:CDS | 20.0% |
| !!! | AATACAAAGTGATTGTTTTA+GGG | + | chr8.3:4190084-4190103 | None:intergenic | 20.0% |
| !!! | ATTTGATTTTTTATAAAGGG+TGG | + | chr8.3:4190004-4190023 | None:intergenic | 20.0% |
| !!! | TAATACAAAGTGATTGTTTT+AGG | + | chr8.3:4190085-4190104 | None:intergenic | 20.0% |
| !!! | TATTTTGCTAATAACTTTGA+TGG | - | chr8.3:4190253-4190272 | MS.gene57630:CDS | 20.0% |
| !!! | TTTAGAACGTTGTAAATTTA+GGG | + | chr8.3:4190138-4190157 | None:intergenic | 20.0% |
| !!! | TTTTAGAACGTTGTAAATTT+AGG | + | chr8.3:4190139-4190158 | None:intergenic | 20.0% |
| ! | AATTAATTAAAGGGGATCAA+AGG | + | chr8.3:4189536-4189555 | None:intergenic | 25.0% |
| ! | GAAAATGAAGAAGAAGAATT+TGG | + | chr8.3:4189331-4189350 | None:intergenic | 25.0% |
| ! | TGATCTTGATTAAGATCAAT+AGG | + | chr8.3:4189289-4189308 | None:intergenic | 25.0% |
| !! | TGAACAATCAAACTCAATTT+TGG | + | chr8.3:4190437-4190456 | None:intergenic | 25.0% |
| !!! | AAAAGAGTTTATCACTTTTG+AGG | - | chr8.3:4190513-4190532 | MS.gene57630:CDS | 25.0% |
| !!! | GAATTGAATCTTTAATTTGG+AGG | + | chr8.3:4190059-4190078 | None:intergenic | 25.0% |
| !!! | TATTAGTATTAGTGCTACTT+AGG | - | chr8.3:4190199-4190218 | MS.gene57630:CDS | 25.0% |
| !!! | TTGATGATGTGATCTTAATT+AGG | - | chr8.3:4189555-4189574 | MS.gene57630:CDS | 25.0% |
| AAGGTTAATATTCACTCAAG+TGG | - | chr8.3:4189583-4189602 | MS.gene57630:CDS | 30.0% | |
| ATTAAGATCAATAGGCATGA+CGG | + | chr8.3:4189281-4189300 | None:intergenic | 30.0% | |
| ATTAAGCTTGAGTGAGAATT+TGG | - | chr8.3:4190543-4190562 | MS.gene57630:CDS | 30.0% | |
| GAGAATAATGAAGAAGATGA+TGG | - | chr8.3:4189765-4189784 | MS.gene57630:intron | 30.0% | |
| TTAAGCTTGAGTGAGAATTT+GGG | - | chr8.3:4190544-4190563 | MS.gene57630:CDS | 30.0% | |
| TTTGTTTGGCAGTAATAAGA+TGG | + | chr8.3:4189409-4189428 | None:intergenic | 30.0% | |
| ! | AAGAAGAATTTGGACTAGAA+AGG | + | chr8.3:4189321-4189340 | None:intergenic | 30.0% |
| !! | CTTTAATTTGGAGGTTTCTA+GGG | + | chr8.3:4190050-4190069 | None:intergenic | 30.0% |
| !! | TCTTTAATTTGGAGGTTTCT+AGG | + | chr8.3:4190051-4190070 | None:intergenic | 30.0% |
| !! | TGATCTTAATTAGGTTGAGA+AGG | - | chr8.3:4189564-4189583 | MS.gene57630:CDS | 30.0% |
| !! | TTATCTTATGGATTAGTCCA+TGG | - | chr8.3:4190622-4190641 | MS.gene57630:CDS | 30.0% |
| !!! | GTTTAGTCTTGTAGTTTTCA+TGG | + | chr8.3:4189636-4189655 | None:intergenic | 30.0% |
| !!! | TCTTTTCTAGTTTGATGAGA+TGG | + | chr8.3:4190499-4190518 | None:intergenic | 30.0% |
| ATATTCACTCAAGTGGATCA+TGG | - | chr8.3:4189590-4189609 | MS.gene57630:CDS | 35.0% | |
| ATGATGGTTTCTGATCAAAC+GGG | - | chr8.3:4189781-4189800 | MS.gene57630:intron | 35.0% | |
| CATGTGGTAAGTTGTTTGTT+TGG | + | chr8.3:4189423-4189442 | None:intergenic | 35.0% | |
| TAATCAAGAAGCTGATCATG+AGG | - | chr8.3:4189708-4189727 | MS.gene57630:intron | 35.0% | |
| TAATTAAAGGGGATCAAAGG+TGG | + | chr8.3:4189533-4189552 | None:intergenic | 35.0% | |
| TACTTTACCTCTTGATCATG+TGG | + | chr8.3:4189439-4189458 | None:intergenic | 35.0% | |
| TTGATCTTGTGAGTCTAAGA+GGG | + | chr8.3:4189377-4189396 | None:intergenic | 35.0% | |
| ! | AATTTGGACTAGAAAGGTCA+TGG | + | chr8.3:4189315-4189334 | None:intergenic | 35.0% |
| ! | GATGATGGTTTCTGATCAAA+CGG | - | chr8.3:4189780-4189799 | MS.gene57630:intron | 35.0% |
| AACACAAGCTGACAATTCGT+TGG | - | chr8.3:4189653-4189672 | MS.gene57630:intron | 40.0% | |
| ATGTGGGATTAGACAAAGGA+AGG | - | chr8.3:4190303-4190322 | MS.gene57630:intron | 40.0% | |
| CAACTTACCACATGATCAAG+AGG | - | chr8.3:4189429-4189448 | MS.gene57630:CDS | 40.0% | |
| CATAAGATAACGCCATGAGA+AGG | + | chr8.3:4190612-4190631 | None:intergenic | 40.0% | |
| CTGCTATTATCTGTTCCTTG+TGG | + | chr8.3:4189871-4189890 | None:intergenic | 40.0% | |
| CTTCTCATGGCGTTATCTTA+TGG | - | chr8.3:4190610-4190629 | MS.gene57630:CDS | 40.0% | |
| CTTGATCTTGTGAGTCTAAG+AGG | + | chr8.3:4189378-4189397 | None:intergenic | 40.0% | |
| TGATCATGAGGATGGTACTT+CGG | - | chr8.3:4189720-4189739 | MS.gene57630:intron | 40.0% | |
| !! | ATGACGGACGAAGATAGATA+AGG | + | chr8.3:4189265-4189284 | None:intergenic | 40.0% |
| ACGCATGTGGGATTAGACAA+AGG | - | chr8.3:4190299-4190318 | MS.gene57630:CDS | 45.0% | |
| ACGGACGAAGATAGATAAGG+TGG | + | chr8.3:4189262-4189281 | None:intergenic | 45.0% | |
| ATGTATACCTTTGGGCCTCT+TGG | + | chr8.3:4189967-4189986 | None:intergenic | 45.0% | |
| CAAGAAGCTGATCATGAGGA+TGG | - | chr8.3:4189712-4189731 | MS.gene57630:intron | 45.0% | |
| GACGAAGATAGATAAGGTGG+TGG | + | chr8.3:4189259-4189278 | None:intergenic | 45.0% | |
| ! | AGTCACTTTGCAACGCATGT+GGG | - | chr8.3:4190287-4190306 | MS.gene57630:CDS | 45.0% |
| ! | TGTTCAACAAGTTTTCCCCC+AGG | - | chr8.3:4190567-4190586 | MS.gene57630:CDS | 45.0% |
| !!! | ATTAATTTGATTTTTTATAA+AGG | + | chr8.3:4190008-4190027 | None:intergenic | 5.0% |
| !!! | TTAATTTGATTTTTTATAAA+GGG | + | chr8.3:4190007-4190026 | None:intergenic | 5.0% |
| AAGCAACCACTGTCACCACA+AGG | - | chr8.3:4189853-4189872 | MS.gene57630:intron | 50.0% | |
| AAGGAAGGCAAGACGTGCTT+TGG | - | chr8.3:4190318-4190337 | MS.gene57630:intron | 50.0% | |
| ACACCACTAAGACCCCTCTA+TGG | - | chr8.3:4189932-4189951 | MS.gene57630:CDS | 50.0% | |
| AGAGGCTGCAATCCTTCTCA+TGG | - | chr8.3:4190597-4190616 | MS.gene57630:CDS | 50.0% | |
| AGGATGGTACTTCGGTGAAG+TGG | - | chr8.3:4189728-4189747 | MS.gene57630:intron | 50.0% | |
| TCTGTTCCTTGTGGTGACAG+TGG | + | chr8.3:4189862-4189881 | None:intergenic | 50.0% | |
| TTGGTCCACTCCTCCATAGA+GGG | + | chr8.3:4189948-4189967 | None:intergenic | 50.0% | |
| ! | CAGTCACTTTGCAACGCATG+TGG | - | chr8.3:4190286-4190305 | MS.gene57630:CDS | 50.0% |
| AAGACCCCTCTATGGAGGAG+TGG | - | chr8.3:4189940-4189959 | MS.gene57630:CDS | 55.0% | |
| CCACTAAGACCCCTCTATGG+AGG | - | chr8.3:4189935-4189954 | MS.gene57630:CDS | 55.0% | |
| CCTCCATAGAGGGGTCTTAG+TGG | + | chr8.3:4189938-4189957 | None:intergenic | 55.0% | |
| CTATGGAGGAGTGGACCAAG+AGG | - | chr8.3:4189949-4189968 | MS.gene57630:CDS | 55.0% | |
| CTTGGTCCACTCCTCCATAG+AGG | + | chr8.3:4189949-4189968 | None:intergenic | 55.0% | |
| TGCAGCCTCTCTCTCATCCT+GGG | + | chr8.3:4190587-4190606 | None:intergenic | 55.0% | |
| TGGTCCACTCCTCCATAGAG+GGG | + | chr8.3:4189947-4189966 | None:intergenic | 55.0% | |
| TTGCAGCCTCTCTCTCATCC+TGG | + | chr8.3:4190588-4190607 | None:intergenic | 55.0% | |
| TTTCCCCCAGGATGAGAGAG+AGG | - | chr8.3:4190579-4190598 | MS.gene57630:CDS | 55.0% | |
| TTTGGCTGCTGCTGCAGCAT+CGG | - | chr8.3:4190336-4190355 | MS.gene57630:intron | 55.0% | |
| CAGCCTCTCTCTCATCCTGG+GGG | + | chr8.3:4190585-4190604 | None:intergenic | 60.0% | |
| GAGTGGACCAAGAGGCCCAA+AGG | - | chr8.3:4189957-4189976 | MS.gene57630:CDS | 60.0% | |
| GCAGCCTCTCTCTCATCCTG+GGG | + | chr8.3:4190586-4190605 | None:intergenic | 60.0% | |
| !! | GCTGCTGCAGCATCGGCAAT+TGG | - | chr8.3:4190343-4190362 | MS.gene57630:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 4189250 | 4190648 | 4189250 | ID=MS.gene57630 |
| chr8.3 | mRNA | 4189250 | 4190648 | 4189250 | ID=MS.gene57630.t1;Parent=MS.gene57630 |
| chr8.3 | exon | 4190448 | 4190648 | 4190448 | ID=MS.gene57630.t1.exon1;Parent=MS.gene57630.t1 |
| chr8.3 | CDS | 4190448 | 4190648 | 4190448 | ID=cds.MS.gene57630.t1;Parent=MS.gene57630.t1 |
| chr8.3 | exon | 4189920 | 4190321 | 4189920 | ID=MS.gene57630.t1.exon2;Parent=MS.gene57630.t1 |
| chr8.3 | CDS | 4189920 | 4190321 | 4189920 | ID=cds.MS.gene57630.t1;Parent=MS.gene57630.t1 |
| chr8.3 | exon | 4189250 | 4189609 | 4189250 | ID=MS.gene57630.t1.exon3;Parent=MS.gene57630.t1 |
| chr8.3 | CDS | 4189250 | 4189609 | 4189250 | ID=cds.MS.gene57630.t1;Parent=MS.gene57630.t1 |
| Gene Sequence |
| Protein sequence |
