AlfalfaGEDB | MS.gene82297

M. sativa cultivar XinJiangDaYe / MS.gene82297

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0008150 GO:0008152 GO:0009521 GO:0009523 GO:0009654 GO:0009987 GO:0015979 GO:0019898 GO:0032991 GO:0043167 GO:0043169 GO:0044237 GO:0046872 GO:0098796 GO:0110165 GO:1902494 GO:1990204
PFAM: PF01789.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82297.t1	AFK43236.1	98.6	138	2	0	94	231	95	232	5.80E-72	281.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82297.t1	P82658	80.0	140	28	0	94	233	81	220	7.2e-63	242.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82297.t1	G7IWL6	98.6	138	2	0	94	231	96	233	4.2e-72	281.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene82297	0.834312	3.22E-56	-1.69E-46
MS.gene049171	MS.gene82297	0.813554	2.41E-51	-1.69E-46
MS.gene049217	MS.gene82297	0.831188	1.92E-55	-1.69E-46
MS.gene049222	MS.gene82297	0.837767	4.28E-57	-1.69E-46
MS.gene049285	MS.gene82297	0.859054	5.39E-63	-1.69E-46
MS.gene049320	MS.gene82297	0.862208	5.96E-64	-1.69E-46
MS.gene049351	MS.gene82297	0.824342	8.50E-54	-1.69E-46
MS.gene049369	MS.gene82297	0.810335	1.21E-50	-1.69E-46
MS.gene049427	MS.gene82297	0.835574	1.55E-56	-1.69E-46
MS.gene049609	MS.gene82297	0.85083	1.32E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82297.t1	MTR_3g028150	96.137	233	7	1	1	231	1	233	5.21e-163	453

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82297.t1	AT3G63540	79.545	132	27	0	102	233	3	134	1.17e-77	233

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Find 67 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTCCTTCCAACCTTC+TGG	0.272048	3.4:+22055794	None:intergenic
AAAGATTTCAATGTGGGAAT+TGG	0.309517	3.4:-22055105	MS.gene82297:CDS
AATATTTAACTTTCCTTTCT+GGG	0.289515	3.4:-22055697	MS.gene82297:CDS
AATTTCAATATCAACAGTCG+GGG	0.689162	3.4:+22054993	None:intergenic
AATTTGCAAGATATTATTAG+TGG	0.515902	3.4:-22055617	MS.gene82297:CDS
ACAATTTCAATATCAACAGT+CGG	0.553544	3.4:+22054991	None:intergenic
ACGGGCTAAAGATTTCAATG+TGG	0.712707	3.4:-22055112	MS.gene82297:CDS
AGCTGCTGCTGCTGTTAAGG+TGG	0.570466	3.4:+22055970	None:intergenic
AGGTGGTGATGTTGTCAGAA+TGG	0.556486	3.4:+22055940	None:intergenic
ATCCACCCTCACGCCTAGCG+TGG	0.542692	3.4:+22055074	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATTTCAATGTGGGAAT+TGG	-	chr3.4:22055901-22055920	MS.gene82297:CDS	30.0%
AATTTCAATATCAACAGTCG+GGG	+	chr3.4:22056046-22056065	None:intergenic	30.0%
ATTTAACATGATATCAGAGC+CGG	-	chr3.4:22055875-22055894	MS.gene82297:CDS	30.0%
ATTTCAATGTGGGAATTGAA+CGG	-	chr3.4:22055905-22055924	MS.gene82297:CDS	30.0%
CAATTTCAATATCAACAGTC+GGG	+	chr3.4:22056047-22056066	None:intergenic	30.0%
CCACATTGAAATCTTTAAAC+CGG	+	chr3.4:22055897-22055916	None:intergenic	30.0%
CGGTTTAAAGATTTCAATGT+GGG	-	chr3.4:22055895-22055914	MS.gene82297:CDS	30.0%
GAAGAAGTGAAAGATGATAA+AGG	-	chr3.4:22055461-22055480	MS.gene82297:CDS	30.0%
TATCTCAAAAGCTAACTCAA+AGG	+	chr3.4:22055843-22055862	None:intergenic	30.0%
TTGTGTTTGAATGAGATAAG+AGG	+	chr3.4:22055032-22055051	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	22054933	22056125	22054933	ID=MS.gene82297
chr3.4	mRNA	22054933	22056125	22054933	ID=MS.gene82297.t1;Parent=MS.gene82297
chr3.4	exon	22055433	22056125	22055433	ID=MS.gene82297.t1.exon1;Parent=MS.gene82297.t1
chr3.4	CDS	22055433	22056125	22055433	ID=cds.MS.gene82297.t1;Parent=MS.gene82297.t1
chr3.4	exon	22054933	22055166	22054933	ID=MS.gene82297.t1.exon2;Parent=MS.gene82297.t1
chr3.4	CDS	22054933	22055166	22054933	ID=cds.MS.gene82297.t1;Parent=MS.gene82297.t1

Gene Sequence

>MS.gene82297

ATGGCCACAATTTTCTCATCATCACCACCACCCATTTTCTCCTCCTCCGCCACCAGCACCACCACAACAACCACCACAACCACCACCATATCAAAACCTCTTATCTCATTCAAACACAAGCAACCTCTAACCACCACCTTAACAGCAGCAGCAGCTATAGCCACCATTCTGACAACATCACCACCTTCCATAGCAGCAGAATCATCTCCCTACAATCTCTACTACGGTACAGCAGCAAGTGCAGCAAACTACGGCGGCTACGGCGGAAACTCAAACAAGAAAGACTCAGCAGAATACATCTACGACGTTCCAGAAGGTTGGAAGGAACGTTTAATATCAAAAGTTGAAAAAGGTACAAATGGAACAGACAGTGAATTCTACAATCCAAAGAAAAGAACAGAGAAAGAATATTTAACTTTCCTTTCTGGGTTTCGTCAGTTAGCACCAAAAGATGCTGTTTTGAACAACTTAGCACTTTCTGATGTGAATTTGCAAGATATTATTAGTGGTGCTGATAATGTGAGTTCTGAAGAAGTGAAAGATGATAAAGGTCAAGTTTATTATGTTTATGAGATTGATGGTGTTGCTTATCATAGCTTGATTTCTGTTACTTGTGCTAATAATAAGCTTTATGCTCATTTTGTTAATGCTCCTACTCCTGAGTGGAATAAAGATAAGGATCTTCTCACTCATGTTCATAAGTCTTTTAAGACTATTGTATAATTTTAGTTTGCTATGTGTTTTTGATATATAAATAATAAATAATATGGTTTTGTTTAACAATGGATATTCTATGATAATGAGAATGGTGTCTTTGTGTGTTGAAGTTGTTTGTAGTTTGTTATTTGCCTCATATTGCTCAGGTTCCCAGGCTGTTGAGTGTATAAATATGTTTGAGTACTCTCATCCTTTGAGTTAGCTTTTGAGATAAGATTCAAGCACATTTAACATGATATCAGAGCCGGTTTAAAGATTTCAATGTGGGAATTGAACGGGCTAAAGATTTCAATGTGGGAATTGGACTCATGCCCACGCTAGGCGTGAGGGTGGATGTTGAAGTTGGTTTTAAAGATGTTTGTAGTTTGTTATTTGTCTCACATTGCTCAGGTTCCCCGACTGTTGATATTGAAATTGTGATGGATCAAACCCTAGACCTCCCGCTTAAAACTCATTCGGCATTCTTAACTTACTAA

Protein sequence

>MS.gene82297.t1

MATIFSSSPPPIFSSSATSTTTTTTTTTTISKPLISFKHKQPLTTTLTAAAAIATILTTSPPSIAAESSPYNLYYGTAASAANYGGYGGNSNKKDSAEYIYDVPEGWKERLISKVEKGTNGTDSEFYNPKKRTEKEYLTFLSGFRQLAPKDAVLNNLALSDVNLQDIISGADNVSSEEVKDDKGQVYYVYEIDGVAYHSLISVTCANNKLYAHFVNAPTPEWNKDKDLLTHSRFKDFNVGIERAKDFNVGIGLMPTLGVRVDVEVGFKDVCSLLFVSHCSGSPTVDIEIVMDQTLDLPLKTHSAFLTY