AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012804.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012804.01.T01 MTR_3g030950 97.638 381 7 2 1 380 1 380 0.0 750
MsG0380012804.01.T01 MTR_3g030975 99.528 212 1 0 169 380 1 212 1.16e-153 431
MsG0380012804.01.T01 MTR_8g104810 89.062 64 7 0 102 165 43 106 6.85e-36 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012804.01.T01 AT3G08010 67.700 387 105 4 1 380 1 374 0.0 530

Find 94 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATGATGCTTATATTTA+AGG 0.045804 3:-24810681 None:intergenic
TAAAATAGAACTTATATTTA+AGG 0.120470 3:-24810728 None:intergenic
CAGAACATGTTTGGAGTTTA+AGG 0.150458 3:-24805567 None:intergenic
CTGAAGATTGTATTGGCTTC+TGG 0.208718 3:+24810495 MsG0380012804.01.T01:CDS
CTAAAGAAGCGAATGTTTCT+AGG 0.224379 3:-24805907 None:intergenic
ATACTATTAATAACATTATT+AGG 0.258304 3:-24805832 None:intergenic
AATCATACTCACCCGTTTAC+TGG 0.258872 3:-24807506 None:intergenic
GAAAGATTTGGATATGGTTC+TGG 0.270200 3:+24809377 MsG0380012804.01.T01:CDS
CTAGAAACATTCGCTTCTTT+AGG 0.283849 3:+24805908 MsG0380012804.01.T01:CDS
TGGGCTAGATCTTGATTTAT+TGG 0.288153 3:+24809397 MsG0380012804.01.T01:CDS
GGGCTAGATCTTGATTTATT+GGG 0.315434 3:+24809398 MsG0380012804.01.T01:CDS
ATTCAGTCATAATAATTTGT+AGG 0.319355 3:-24810552 None:intergenic
ATACTGTCAGGATCAGCTTC+TGG 0.321460 3:-24805694 None:intergenic
AGTAGCCATGGTTATGGTTA+TGG 0.328934 3:-24805419 None:intergenic
CAAATGATGCTTATATTTAA+GGG 0.347994 3:-24810680 None:intergenic
TGTTGCTATTTGTGATGAAC+TGG 0.370001 3:+24805873 MsG0380012804.01.T01:CDS
CTTCAGAATCTAACTCATCT+TGG 0.371396 3:-24810478 None:intergenic
GTCGCAAAAGGATTGTCTAA+TGG 0.378728 3:-24808977 None:intergenic
ATGCTAGAGGAAAGAAACTT+TGG 0.380045 3:+24805758 MsG0380012804.01.T01:CDS
TCTCGTGCTAAAATATTATC+AGG 0.382198 3:+24809470 MsG0380012804.01.T01:CDS
TCAGAGGAAAGATTTGGATA+TGG 0.386627 3:+24809371 MsG0380012804.01.T01:CDS
GAAGCAGCTAAGAAAGCTTC+TGG 0.387670 3:+24810434 MsG0380012804.01.T01:CDS
TTTCTGAGACAGAACATGTT+TGG 0.391400 3:-24805576 None:intergenic
GAGAGTTTGGTGGTGATGAC+GGG 0.393500 3:-24805493 None:intergenic
TTTCCTCTAGCATCAAGAAT+TGG 0.395207 3:-24805748 None:intergenic
TAAGAGCTCTTCCCAGTAAA+CGG 0.396897 3:+24807494 MsG0380012804.01.T01:CDS
AATAATTTGTAGGATTATAC+AGG 0.401336 3:-24810542 None:intergenic
TCAGCCTCAGAGGAAAGATT+TGG 0.414247 3:+24809365 MsG0380012804.01.T01:CDS
TTAGATTCTGAAGATTGTAT+TGG 0.414494 3:+24810488 MsG0380012804.01.T01:CDS
TTAAGGGCAGACGTAGTAAA+AGG 0.414695 3:-24810664 None:intergenic
CTTTGTGTGTAACTGATTTG+TGG 0.415730 3:-24805391 None:intergenic
GAAGATGCAACAGCCAATCC+TGG 0.417168 3:-24809449 None:intergenic
GCTTAGAGTAGCCATGGTTA+TGG 0.422554 3:-24805425 None:intergenic
AGATAACATGTTTCAGCAGT+TGG 0.424045 3:-24805667 None:intergenic
TACTGTCAGGATCAGCTTCT+GGG 0.430219 3:-24805693 None:intergenic
AAAGATTTGGATATGGTTCT+GGG 0.430953 3:+24809378 MsG0380012804.01.T01:CDS
GAAACATCCTGGATTTCAAA+AGG 0.431524 3:+24808937 MsG0380012804.01.T01:CDS
AACTAAAGAAGCTGAAGCTT+GGG 0.435084 3:+24810412 MsG0380012804.01.T01:CDS
TTTGTGTGTAACTGATTTGT+GGG 0.435175 3:-24805390 None:intergenic
GATAACATGTTTCAGCAGTT+GGG 0.444982 3:-24805666 None:intergenic
CTACAAAACTTTGTAACCTT+AGG 0.445193 3:-24810626 None:intergenic
ATGTTTGGAGTTTAAGGAAG+TGG 0.452226 3:-24805561 None:intergenic
AATTATTACAAAAGCATGTA+AGG 0.453031 3:+24807462 MsG0380012804.01.T01:CDS
TACAAAAGCATGTAAGGAGC+TGG 0.453660 3:+24807468 MsG0380012804.01.T01:CDS
ACGAGCAGTGTCCGTTTCAA+TGG 0.454973 3:-24810318 None:intergenic
CTAATGACTTTACCTGAGTA+AGG 0.456324 3:-24809049 None:intergenic
GGAGAGTTTGGTGGTGATGA+CGG 0.457343 3:-24805494 None:intergenic
CAACTAAAGAAGCTGAAGCT+TGG 0.463491 3:+24810411 MsG0380012804.01.T01:CDS
ATCCTGACAGTATATTAAGC+TGG 0.466941 3:+24805704 MsG0380012804.01.T01:CDS
GTCTAATGGCAAAAGAGGCT+TGG 0.468563 3:-24808963 None:intergenic
CTAACTCATCTTGGATTGCT+AGG 0.473543 3:-24810469 None:intergenic
TGCTAGAGGAAAGAAACTTT+GGG 0.479591 3:+24805759 MsG0380012804.01.T01:CDS
AAGAGCTCTTCCCAGTAAAC+GGG 0.480174 3:+24807495 MsG0380012804.01.T01:CDS
AACAGCCAATCCTGGGATCA+AGG 0.490579 3:-24809441 None:intergenic
TCCCAGCTTAATATACTGTC+AGG 0.490831 3:-24805706 None:intergenic
GGAAAATGGGAATTTGATGA+TGG 0.494810 3:-24805527 None:intergenic
AAATCTTTCCTCTGAGGCTG+AGG 0.496486 3:-24809363 None:intergenic
GGAGCTCTGTTCCATTGAAA+CGG 0.498099 3:+24810307 MsG0380012804.01.T01:CDS
GGTTGGTGTAGTTGAAAGAT+GGG 0.499156 3:-24805471 None:intergenic
AAATTCCAACTGAAAGAGTC+AGG 0.502775 3:-24810346 None:intergenic
CAGTATATTAAGCTGGGAGT+TGG 0.503857 3:+24805711 MsG0380012804.01.T01:CDS
ATCATACTCACCCGTTTACT+GGG 0.505577 3:-24807505 None:intergenic
TTTGTTCAGTTACCTTACTC+AGG 0.508695 3:+24809037 MsG0380012804.01.T01:CDS
TTTGGTGGTGATGACGGGGT+TGG 0.515396 3:-24805488 None:intergenic
AGCTTCAGCTTCTTTAGTTG+AGG 0.517831 3:-24810408 None:intergenic
ACTGTATACACGAAACATCC+TGG 0.520597 3:+24808926 MsG0380012804.01.T01:CDS
GGGTTGGTGTAGTTGAAAGA+TGG 0.526908 3:-24805472 None:intergenic
TTGTAGGATTATACAGGTGG+AGG 0.528540 3:-24810536 None:intergenic
GAAGACCTTGATCCCAGGAT+TGG 0.531133 3:+24809436 MsG0380012804.01.T01:CDS
TGTTGTTGTTGTTGATGATG+AGG 0.533351 3:-24805599 None:intergenic
AGACCAATTCTTGATGCTAG+AGG 0.533980 3:+24805745 MsG0380012804.01.T01:CDS
TCTAACCTGACTCTTTCAGT+TGG 0.538576 3:+24810341 MsG0380012804.01.T01:CDS
AAGCGAATGTTTCTAGGCAC+AGG 0.539819 3:-24805901 None:intergenic
GGATTGTCTAATGGCAAAAG+AGG 0.539986 3:-24808968 None:intergenic
GACGAGAAGACCTTGATCCC+AGG 0.544783 3:+24809431 MsG0380012804.01.T01:CDS
TCCTGACAGTATATTAAGCT+GGG 0.544833 3:+24805705 MsG0380012804.01.T01:CDS
TAGGATTATACAGGTGGAGG+TGG 0.549708 3:-24810533 None:intergenic
TATTATAGCCGTTCGAGAGG+AGG 0.550876 3:+24809340 MsG0380012804.01.T01:intron
AAACATCCTGGATTTCAAAA+GGG 0.557929 3:+24808938 MsG0380012804.01.T01:CDS
TCAGCTTCTTTAGTTGAGGT+AGG 0.564251 3:-24810404 None:intergenic
TATTAATAGTATCACTCTCA+AGG 0.566789 3:+24805843 MsG0380012804.01.T01:CDS
GTTGAAGCTTAGAGTAGCCA+TGG 0.581076 3:-24805431 None:intergenic
AGAGTTTGGTGGTGATGACG+GGG 0.583469 3:-24805492 None:intergenic
CTTTATTATAGCCGTTCGAG+AGG 0.585820 3:+24809337 MsG0380012804.01.T01:intron
AAGATGCAACAGCCAATCCT+GGG 0.585967 3:-24809448 None:intergenic
ACAAAAGCATGTAAGGAGCT+GGG 0.589228 3:+24807469 MsG0380012804.01.T01:CDS
AATTTGTAGGATTATACAGG+TGG 0.594095 3:-24810539 None:intergenic
GGCTGAGGCCTCCTCTCGAA+CGG 0.600823 3:-24809348 None:intergenic
AGAGGAGGCCTCAGCCTCAG+AGG 0.611276 3:+24809355 MsG0380012804.01.T01:CDS
TTTCAGTTGGAATTTCGACT+CGG 0.613028 3:+24810354 MsG0380012804.01.T01:CDS
GTTGGTGTAGTTGAAAGATG+GGG 0.645636 3:-24805470 None:intergenic
CACAGCCATAACCATAACCA+TGG 0.656537 3:+24805414 MsG0380012804.01.T01:exon
ATATCCAAATCTTTCCTCTG+AGG 0.661900 3:-24809369 None:intergenic
GCAGCTAAGAAAGCTTCTGG+AGG 0.687768 3:+24810437 MsG0380012804.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTATTAATAACATTATT+AGG - Chr3:24805835-24805854 None:intergenic 10.0%
!! TAAAATAGAACTTATATTTA+AGG - Chr3:24810731-24810750 None:intergenic 10.0%
!!! ATTTTAATTAAAAATTACCT+TGG + Chr3:24809644-24809663 MsG0380012804.01.T01:intron 10.0%
!!! CTAATTATTTTTATATACTT+TGG - Chr3:24806704-24806723 None:intergenic 10.0%
!! ACAGAATTAATTAATTATCA+TGG + Chr3:24809687-24809706 MsG0380012804.01.T01:intron 15.0%
!! ATAAAAAGAAAAAAAAAGGT+TGG + Chr3:24807968-24807987 MsG0380012804.01.T01:intron 15.0%
!! ATACATACATACATATATAA+AGG + Chr3:24809528-24809547 MsG0380012804.01.T01:intron 15.0%
!! ATATATGTTAGAGATTAAAA+TGG + Chr3:24806883-24806902 MsG0380012804.01.T01:intron 15.0%
!! TAAAATGAAAAAAGAAACAA+GGG - Chr3:24808405-24808424 None:intergenic 15.0%
!! TACATACATACATATATAAA+GGG + Chr3:24809529-24809548 MsG0380012804.01.T01:intron 15.0%
!! TTAAAATGAAAAAAGAAACA+AGG - Chr3:24808406-24808425 None:intergenic 15.0%
!!! TATACAAATTTACAGTATTT+TGG - Chr3:24809881-24809900 None:intergenic 15.0%
!!! TTAACAACTATTTTTTGTTT+TGG + Chr3:24808135-24808154 MsG0380012804.01.T01:intron 15.0%
!! AAAATGAAAAAAGAAACAAG+GGG - Chr3:24808404-24808423 None:intergenic 20.0%
!! AAATGTTCTTAGAAAGTAAA+TGG - Chr3:24807707-24807726 None:intergenic 20.0%
!! ACAAATTATAAACATGTCAT+AGG - Chr3:24810056-24810075 None:intergenic 20.0%
!! ACACTTTATAAACTCTATTT+AGG - Chr3:24807048-24807067 None:intergenic 20.0%
!! ACTATATCTTGTGTATTTAT+TGG + Chr3:24806987-24807006 MsG0380012804.01.T01:intron 20.0%
!! AGTACTTATTGTTTATGTTA+CGG + Chr3:24805950-24805969 MsG0380012804.01.T01:intron 20.0%
!! CAAATGATGCTTATATTTAA+GGG - Chr3:24810683-24810702 None:intergenic 20.0%
!! TAAAGTGATTAAACTGAATA+TGG - Chr3:24807941-24807960 None:intergenic 20.0%
!! TCAAATGATGCTTATATTTA+AGG - Chr3:24810684-24810703 None:intergenic 20.0%
!!! AATAATTTGTAGGATTATAC+AGG - Chr3:24810545-24810564 None:intergenic 20.0%
!!! AATTATTACAAAAGCATGTA+AGG + Chr3:24807462-24807481 MsG0380012804.01.T01:CDS 20.0%
!!! AATTATTGATTTCAACAAGA+TGG - Chr3:24808496-24808515 None:intergenic 20.0%
!!! AGTTTGTAGCATTTTTTTTT+AGG - Chr3:24806787-24806806 None:intergenic 20.0%
!!! ATACTTTGGGAATTAAATTA+AGG - Chr3:24806690-24806709 None:intergenic 20.0%
!!! ATGAGTTTTCATATACTTTA+GGG + Chr3:24806813-24806832 MsG0380012804.01.T01:intron 20.0%
!!! ATTCAGTCATAATAATTTGT+AGG - Chr3:24810555-24810574 None:intergenic 20.0%
!!! CAAAAAAATCTGAAACTAAT+GGG + Chr3:24807215-24807234 MsG0380012804.01.T01:intron 20.0%
!!! GTTTGTAGCATTTTTTTTTA+GGG - Chr3:24806786-24806805 None:intergenic 20.0%
!!! TACTTTGGGAATTAAATTAA+GGG - Chr3:24806689-24806708 None:intergenic 20.0%
!!! TCAAAAAAATCTGAAACTAA+TGG + Chr3:24807214-24807233 MsG0380012804.01.T01:intron 20.0%
! AAAAATAGTTGTTAAGCGTT+TGG - Chr3:24808130-24808149 None:intergenic 25.0%
! AAAAGAAAAAAAAAGGTTGG+AGG + Chr3:24807971-24807990 MsG0380012804.01.T01:intron 25.0%
! AAAATGTATGATAGCATCAT+AGG - Chr3:24809785-24809804 None:intergenic 25.0%
! AAAGAAAAAAAAAGGTTGGA+GGG + Chr3:24807972-24807991 MsG0380012804.01.T01:intron 25.0%
! AAATGAAAAAAGAAACAAGG+GGG - Chr3:24808403-24808422 None:intergenic 25.0%
! AGAATAAGTAACTACTTGTA+GGG - Chr3:24806618-24806637 None:intergenic 25.0%
! ATAAAAAAACCATTATGCCA+TGG + Chr3:24806560-24806579 MsG0380012804.01.T01:intron 25.0%
! ATAAATGTTGACAAAAAAGC+TGG + Chr3:24809900-24809919 MsG0380012804.01.T01:intron 25.0%
! ATATATATGTATGTATGACC+CGG - Chr3:24809591-24809610 None:intergenic 25.0%
! ATCATTTATTATGCTTACAC+TGG + Chr3:24809161-24809180 MsG0380012804.01.T01:intron 25.0%
! GCAAACTAATCCATTTATAT+CGG - Chr3:24807593-24807612 None:intergenic 25.0%
! GTTATTGTTTACTTACTCAT+TGG + Chr3:24806432-24806451 MsG0380012804.01.T01:intron 25.0%
! TAAGGTAATTCTACAATCAA+AGG - Chr3:24810149-24810168 None:intergenic 25.0%
! TAATAATAAAGCTAACACAC+TGG + Chr3:24808190-24808209 MsG0380012804.01.T01:intron 25.0%
! TAATGTTTCATCCAAGATAT+TGG + Chr3:24808545-24808564 MsG0380012804.01.T01:intron 25.0%
! TAATTAAGCGCTTATGTATA+AGG - Chr3:24810167-24810186 None:intergenic 25.0%
! TATTAATAGTATCACTCTCA+AGG + Chr3:24805843-24805862 MsG0380012804.01.T01:CDS 25.0%
! TGTGATTCTCTGTAATATTA+AGG - Chr3:24806487-24806506 None:intergenic 25.0%
! TGTTACATATTGTTAGTGTA+AGG + Chr3:24807390-24807409 MsG0380012804.01.T01:intron 25.0%
! TTCAGTAAACTGATTAATTG+TGG + Chr3:24806091-24806110 MsG0380012804.01.T01:intron 25.0%
! TTTGTCTACAAATTCTATTC+AGG - Chr3:24809934-24809953 None:intergenic 25.0%
!! ACATGGTTTTTCATGTATTT+AGG + Chr3:24809102-24809121 MsG0380012804.01.T01:intron 25.0%
!! ATAAAACACTGTGAATCTTT+TGG + Chr3:24808798-24808817 MsG0380012804.01.T01:intron 25.0%
!! CATGGTTTTTCATGTATTTA+GGG + Chr3:24809103-24809122 MsG0380012804.01.T01:intron 25.0%
!! GATGAGTTTTCATATACTTT+AGG + Chr3:24806812-24806831 MsG0380012804.01.T01:intron 25.0%
!! TAAACTGAATATGGATTTTC+AGG - Chr3:24807932-24807951 None:intergenic 25.0%
!! TAAGTATTGTCAAACTGTTT+GGG + Chr3:24806153-24806172 MsG0380012804.01.T01:intron 25.0%
!! TTAGATTCTGAAGATTGTAT+TGG + Chr3:24810488-24810507 MsG0380012804.01.T01:CDS 25.0%
!!! AACGACTTCATATATTTTAG+CGG + Chr3:24806845-24806864 MsG0380012804.01.T01:intron 25.0%
!!! AATATGGATCTTCTTTGTTT+TGG - Chr3:24808469-24808488 None:intergenic 25.0%
!!! ATATAAATGGATTAGTTTGC+TGG + Chr3:24807593-24807612 MsG0380012804.01.T01:intron 25.0%
!!! ATATGGATCTTCTTTGTTTT+GGG - Chr3:24808468-24808487 None:intergenic 25.0%
!!! CTTTATTTTCTCTGCATTTA+GGG + Chr3:24807156-24807175 MsG0380012804.01.T01:intron 25.0%
!!! CTTTTTGTTAGCTTTTACAT+TGG + Chr3:24806646-24806665 MsG0380012804.01.T01:intron 25.0%
!!! TAGATTTTAGCAAAACTGAT+TGG - Chr3:24807088-24807107 None:intergenic 25.0%
!!! TCAAAGTCATTTTTAAACCA+AGG - Chr3:24809664-24809683 None:intergenic 25.0%
!!! TGTTGGTTTTTATATGACTT+CGG + Chr3:24808587-24808606 MsG0380012804.01.T01:intron 25.0%
!!! TTTTGGCTTGTTCAAAAAAA+AGG + Chr3:24808292-24808311 MsG0380012804.01.T01:intron 25.0%
AAACATCCTGGATTTCAAAA+GGG + Chr3:24808938-24808957 MsG0380012804.01.T01:CDS 30.0%
AAATTTGTGAACAACGGAAA+GGG + Chr3:24808029-24808048 MsG0380012804.01.T01:intron 30.0%
AACATTTAAAAGCTGATGTC+AGG - Chr3:24808746-24808765 None:intergenic 30.0%
AACTTACGACATAAACACTT+CGG + Chr3:24810008-24810027 MsG0380012804.01.T01:intron 30.0%
AAGAAAAAAAAAGGTTGGAG+GGG + Chr3:24807973-24807992 MsG0380012804.01.T01:intron 30.0%
AATGAAAAAAGAAACAAGGG+GGG - Chr3:24808402-24808421 None:intergenic 30.0%
AATTTGTAGGATTATACAGG+TGG - Chr3:24810542-24810561 None:intergenic 30.0%
ATAAAAGCTGTCACAGTAAA+TGG - Chr3:24810278-24810297 None:intergenic 30.0%
CAAGTAGTTACTTATTCTGT+TGG + Chr3:24806620-24806639 MsG0380012804.01.T01:intron 30.0%
CAGAATAAGTAACTACTTGT+AGG - Chr3:24806619-24806638 None:intergenic 30.0%
CATGTAAGTCATGTTATGTT+TGG - Chr3:24807372-24807391 None:intergenic 30.0%
CCTAAATGCAGAGAAAATAA+AGG - Chr3:24807158-24807177 None:intergenic 30.0%
CTACAAAACTTTGTAACCTT+AGG - Chr3:24810629-24810648 None:intergenic 30.0%
CTACAATCAAAGGAGAAATT+TGG - Chr3:24810139-24810158 None:intergenic 30.0%
CTGTAGAAATTTGTGAACAA+CGG + Chr3:24808023-24808042 MsG0380012804.01.T01:intron 30.0%
GAAGCGTATAAAATATACAC+CGG - Chr3:24808851-24808870 None:intergenic 30.0%
GTAGATATTTGATTGTGATG+TGG + Chr3:24807995-24808014 MsG0380012804.01.T01:intron 30.0%
GTTAAGAAATATGCATACTC+TGG - Chr3:24809991-24810010 None:intergenic 30.0%
GTTGTTCACAAATTTCTACA+GGG - Chr3:24808024-24808043 None:intergenic 30.0%
TAATTGGCAATAAAACCAAG+TGG + Chr3:24807637-24807656 MsG0380012804.01.T01:intron 30.0%
TCTCGTGCTAAAATATTATC+AGG + Chr3:24809470-24809489 MsG0380012804.01.T01:CDS 30.0%
TGATTAATTGTGGACATGTT+TGG + Chr3:24806101-24806120 MsG0380012804.01.T01:intron 30.0%
TTCTCCAAGACAGTTTAAAA+GGG + Chr3:24806237-24806256 MsG0380012804.01.T01:intron 30.0%
TTTCTTTCACTAAACTGTCT+TGG - Chr3:24806323-24806342 None:intergenic 30.0%
TTTGTCAGAAAATGTACTTC+TGG - Chr3:24808651-24808670 None:intergenic 30.0%
! AAACTTCCAGAAGATCTTTT+TGG + Chr3:24809001-24809020 MsG0380012804.01.T01:CDS 30.0%
! AATTTTACTTTGCATGTGAG+TGG + Chr3:24807742-24807761 MsG0380012804.01.T01:intron 30.0%
! AGTTAGAGCATCCAAAAATT+TGG + Chr3:24808370-24808389 MsG0380012804.01.T01:intron 30.0%
! GATTTCAGAAGTTTTACCTA+AGG + Chr3:24810610-24810629 MsG0380012804.01.T01:three_prime_UTR 30.0%
! GCAATGAAATTTTGAATCCA+CGG - Chr3:24807542-24807561 None:intergenic 30.0%
! GCCTTTTCATAAGAAACTAA+GGG - Chr3:24807241-24807260 None:intergenic 30.0%
! GTAAGTATTGTCAAACTGTT+TGG + Chr3:24806152-24806171 MsG0380012804.01.T01:intron 30.0%
! TCTTTAAGAATTGCATGACA+TGG + Chr3:24809085-24809104 MsG0380012804.01.T01:intron 30.0%
! TGCCTTTTCATAAGAAACTA+AGG - Chr3:24807242-24807261 None:intergenic 30.0%
! TTTAAGGAAGTGGTTTTTGT+TGG - Chr3:24805554-24805573 None:intergenic 30.0%
!! AAGATCTTTTTGGTGAAAGA+TGG + Chr3:24809011-24809030 MsG0380012804.01.T01:CDS 30.0%
!! AGATCTTTTTGGTGAAAGAT+GGG + Chr3:24809012-24809031 MsG0380012804.01.T01:CDS 30.0%
!! AGTGCTTGTCATTACTTTTA+TGG + Chr3:24808885-24808904 MsG0380012804.01.T01:intron 30.0%
!! GGGTTTGAAATAAAGTTTTG+CGG - Chr3:24806598-24806617 None:intergenic 30.0%
!! GTCATTACTTTTATGGTTAG+AGG + Chr3:24808892-24808911 MsG0380012804.01.T01:CDS 30.0%
!! GTGTAGGTTTTTAGAAATGT+GGG + Chr3:24808702-24808721 MsG0380012804.01.T01:intron 30.0%
!! TGTAGGTTTTTAGAAATGTG+GGG + Chr3:24808703-24808722 MsG0380012804.01.T01:intron 30.0%
!! TTTGTGTGTAACTGATTTGT+GGG - Chr3:24805393-24805412 None:intergenic 30.0%
!!! ATTCCTCTTGTTTTAGTACA+AGG + Chr3:24809252-24809271 MsG0380012804.01.T01:intron 30.0%
!!! CCTTTATTTTCTCTGCATTT+AGG + Chr3:24807155-24807174 MsG0380012804.01.T01:intron 30.0%
!!! TATGGATCTTCTTTGTTTTG+GGG - Chr3:24808467-24808486 None:intergenic 30.0%
!!! TGTTAGCTTTTACATTGGTA+GGG + Chr3:24806651-24806670 MsG0380012804.01.T01:intron 30.0%
!!! TTGTTAGCTTTTACATTGGT+AGG + Chr3:24806650-24806669 MsG0380012804.01.T01:intron 30.0%
!!! TTTGATGATGGATTTTGAAG+AGG - Chr3:24805518-24805537 None:intergenic 30.0%
AAACCTTGGATCAAAAGCTT+AGG + Chr3:24807678-24807697 MsG0380012804.01.T01:intron 35.0%
AAATTCCAACTGAAAGAGTC+AGG - Chr3:24810349-24810368 None:intergenic 35.0%
AACCTTGGATCAAAAGCTTA+GGG + Chr3:24807679-24807698 MsG0380012804.01.T01:intron 35.0%
AACTAAAGAAGCTGAAGCTT+GGG + Chr3:24810412-24810431 MsG0380012804.01.T01:CDS 35.0%
AATTTGTGAACAACGGAAAG+GGG + Chr3:24808030-24808049 MsG0380012804.01.T01:intron 35.0%
ACAAATTCTATTCAGGACAC+TGG - Chr3:24809927-24809946 None:intergenic 35.0%
ACTAAACTGTCTTGGAGAAA+TGG - Chr3:24806315-24806334 None:intergenic 35.0%
AGATAACATGTTTCAGCAGT+TGG - Chr3:24805670-24805689 None:intergenic 35.0%
ATAGTTGAGTAGATGACGTA+TGG - Chr3:24806972-24806991 None:intergenic 35.0%
ATCCTGACAGTATATTAAGC+TGG + Chr3:24805704-24805723 MsG0380012804.01.T01:CDS 35.0%
ATGCTAGAGGAAAGAAACTT+TGG + Chr3:24805758-24805777 MsG0380012804.01.T01:CDS 35.0%
ATTGATCAAAGATGAGTGCT+AGG - Chr3:24809851-24809870 None:intergenic 35.0%
CGTTGTTCACAAATTTCTAC+AGG - Chr3:24808025-24808044 None:intergenic 35.0%
CTAAAGAAGCGAATGTTTCT+AGG - Chr3:24805910-24805929 None:intergenic 35.0%
CTAATCCATTTATATCGGCA+AGG - Chr3:24807588-24807607 None:intergenic 35.0%
CTAATGACTTTACCTGAGTA+AGG - Chr3:24809052-24809071 None:intergenic 35.0%
CTAGAAACATTCGCTTCTTT+AGG + Chr3:24805908-24805927 MsG0380012804.01.T01:CDS 35.0%
CTTCAGAATCTAACTCATCT+TGG - Chr3:24810481-24810500 None:intergenic 35.0%
CTTTCACCAAAAAGATCTTC+TGG - Chr3:24809010-24809029 None:intergenic 35.0%
GAAACATCCTGGATTTCAAA+AGG + Chr3:24808937-24808956 MsG0380012804.01.T01:CDS 35.0%
GAAATTTGTGAACAACGGAA+AGG + Chr3:24808028-24808047 MsG0380012804.01.T01:intron 35.0%
GAGTATGCTTTCCAATATCT+TGG - Chr3:24808559-24808578 None:intergenic 35.0%
GATAACATGTTTCAGCAGTT+GGG - Chr3:24805669-24805688 None:intergenic 35.0%
GCCCTTAGTTTCTTATGAAA+AGG + Chr3:24807237-24807256 MsG0380012804.01.T01:intron 35.0%
GCTAGAGTGACATTTAGTTA+TGG + Chr3:24807764-24807783 MsG0380012804.01.T01:intron 35.0%
GGAAAATGGGAATTTGATGA+TGG - Chr3:24805530-24805549 None:intergenic 35.0%
GGGCTAGATCTTGATTTATT+GGG + Chr3:24809398-24809417 MsG0380012804.01.T01:CDS 35.0%
GTTCTCCAAGACAGTTTAAA+AGG + Chr3:24806236-24806255 MsG0380012804.01.T01:intron 35.0%
TACATATATAAAGGGCAACC+CGG + Chr3:24809537-24809556 MsG0380012804.01.T01:intron 35.0%
TAGAGTGACAATTACATGCA+TGG + Chr3:24806923-24806942 MsG0380012804.01.T01:intron 35.0%
TCAACAAGATGGAGCAAATA+TGG - Chr3:24808485-24808504 None:intergenic 35.0%
TCCTGACAGTATATTAAGCT+GGG + Chr3:24805705-24805724 MsG0380012804.01.T01:CDS 35.0%
TCTAAAAACCTACACGTTTC+TGG - Chr3:24808697-24808716 None:intergenic 35.0%
TGCTAGAGGAAAGAAACTTT+GGG + Chr3:24805759-24805778 MsG0380012804.01.T01:CDS 35.0%
TGCTCAGCAGAAAACTATAT+AGG + Chr3:24807559-24807578 MsG0380012804.01.T01:intron 35.0%
TTTAAAAGCTGATGTCAGGA+AGG - Chr3:24808742-24808761 None:intergenic 35.0%
TTTAGCAAAACTGATTGGCA+AGG - Chr3:24807083-24807102 None:intergenic 35.0%
TTTCAGTTGGAATTTCGACT+CGG + Chr3:24810354-24810373 MsG0380012804.01.T01:CDS 35.0%
TTTCCTCTAGCATCAAGAAT+TGG - Chr3:24805751-24805770 None:intergenic 35.0%
TTTGTTCAGTTACCTTACTC+AGG + Chr3:24809037-24809056 MsG0380012804.01.T01:CDS 35.0%
! ACTGTGACAGCTTTTATGAA+TGG + Chr3:24810281-24810300 MsG0380012804.01.T01:intron 35.0%
! ATGTTTGGAGTTTAAGGAAG+TGG - Chr3:24805564-24805583 None:intergenic 35.0%
! CAGAACATGTTTGGAGTTTA+AGG - Chr3:24805570-24805589 None:intergenic 35.0%
! GACAGCTTTTATGAATGGAT+TGG + Chr3:24810286-24810305 MsG0380012804.01.T01:intron 35.0%
! GAGGTCTGCAATTTCAATTT+TGG + Chr3:24808275-24808294 MsG0380012804.01.T01:intron 35.0%
! GCAACCACTATTTAAAACCA+CGG - Chr3:24806461-24806480 None:intergenic 35.0%
! GGGGGAATAAACCAAATTTT+TGG - Chr3:24808384-24808403 None:intergenic 35.0%
! GGTTTTTGTTGGAGGAAAAT+GGG - Chr3:24805543-24805562 None:intergenic 35.0%
! TAAGCTTTTGATCCAAGGTT+TGG - Chr3:24807679-24807698 None:intergenic 35.0%
! TGACAATCTGAGACACTAAT+TGG + Chr3:24807621-24807640 MsG0380012804.01.T01:intron 35.0%
! TGAGGTAGGACTTTTCTTAT+AGG - Chr3:24810393-24810412 None:intergenic 35.0%
! TGGGCTAGATCTTGATTTAT+TGG + Chr3:24809397-24809416 MsG0380012804.01.T01:CDS 35.0%
! TGGTTTTTGTTGGAGGAAAA+TGG - Chr3:24805544-24805563 None:intergenic 35.0%
!! AGTAATGACAAGCACTGAAA+AGG - Chr3:24808881-24808900 None:intergenic 35.0%
!! CGATGTTAGTTTGTTTGGAT+TGG + Chr3:24808092-24808111 MsG0380012804.01.T01:intron 35.0%
!! CGTGTAGGTTTTTAGAAATG+TGG + Chr3:24808701-24808720 MsG0380012804.01.T01:intron 35.0%
!! CTTTGTGTGTAACTGATTTG+TGG - Chr3:24805394-24805413 None:intergenic 35.0%
!! GTAGGTTTTTAGAAATGTGG+GGG + Chr3:24808704-24808723 MsG0380012804.01.T01:intron 35.0%
!! TAGGTCGATGTTAGTTTGTT+TGG + Chr3:24808087-24808106 MsG0380012804.01.T01:intron 35.0%
!! TGGTGTCTTTAAGACATGTT+GGG + Chr3:24807272-24807291 MsG0380012804.01.T01:intron 35.0%
!! TGTTGCTATTTGTGATGAAC+TGG + Chr3:24805873-24805892 MsG0380012804.01.T01:CDS 35.0%
!! TGTTGTTGTTGTTGATGATG+AGG - Chr3:24805602-24805621 None:intergenic 35.0%
!! TTTCTGAGACAGAACATGTT+TGG - Chr3:24805579-24805598 None:intergenic 35.0%
!! TTTTAGAAATGTGGGGGATT+GGG + Chr3:24808710-24808729 MsG0380012804.01.T01:intron 35.0%
!! TTTTTAGAAATGTGGGGGAT+TGG + Chr3:24808709-24808728 MsG0380012804.01.T01:intron 35.0%
!!! ATGGATCTTCTTTGTTTTGG+GGG - Chr3:24808466-24808485 None:intergenic 35.0%
!!! GTGGTTTTAAATAGTGGTTG+CGG + Chr3:24806460-24806479 MsG0380012804.01.T01:intron 35.0%
AAATCTAGGCCATGGCATAA+TGG - Chr3:24806572-24806591 None:intergenic 40.0%
AATCATACTCACCCGTTTAC+TGG - Chr3:24807509-24807528 None:intergenic 40.0%
ACCTTGGATCAAAAGCTTAG+GGG + Chr3:24807680-24807699 MsG0380012804.01.T01:intron 40.0%
ACTGTATACACGAAACATCC+TGG + Chr3:24808926-24808945 MsG0380012804.01.T01:CDS 40.0%
AGACATGTTGGGATTTCACA+TGG + Chr3:24807283-24807302 MsG0380012804.01.T01:intron 40.0%
AGACCAATTCTTGATGCTAG+AGG + Chr3:24805745-24805764 MsG0380012804.01.T01:CDS 40.0%
AGCATACTCATCTAGACTGT+TGG + Chr3:24808570-24808589 MsG0380012804.01.T01:intron 40.0%
AGCTTCAGCTTCTTTAGTTG+AGG - Chr3:24810411-24810430 None:intergenic 40.0%
AGTAGCCATGGTTATGGTTA+TGG - Chr3:24805422-24805441 None:intergenic 40.0%
ATCATACTCACCCGTTTACT+GGG - Chr3:24807508-24807527 None:intergenic 40.0%
ATTTGTGAACAACGGAAAGG+GGG + Chr3:24808031-24808050 MsG0380012804.01.T01:intron 40.0%
CAACACTTTCTCTAACACTC+TGG - Chr3:24809815-24809834 None:intergenic 40.0%
CAACACTTTGTAGTTAGCAC+CGG - Chr3:24808346-24808365 None:intergenic 40.0%
CAACTAAAGAAGCTGAAGCT+TGG + Chr3:24810411-24810430 MsG0380012804.01.T01:CDS 40.0%
CAGTATATTAAGCTGGGAGT+TGG + Chr3:24805711-24805730 MsG0380012804.01.T01:CDS 40.0%
CTAACTCATCTTGGATTGCT+AGG - Chr3:24810472-24810491 None:intergenic 40.0%
CTCTCGAACGGCTATAATAA+AGG - Chr3:24809339-24809358 None:intergenic 40.0%
CTGCAATTTCAAAGACTGTC+TGG + Chr3:24808316-24808335 MsG0380012804.01.T01:intron 40.0%
CTTTATTATAGCCGTTCGAG+AGG + Chr3:24809337-24809356 MsG0380012804.01.T01:intron 40.0%
GACATGTTGGGATTTCACAT+GGG + Chr3:24807284-24807303 MsG0380012804.01.T01:intron 40.0%
GGATTGTCTAATGGCAAAAG+AGG - Chr3:24808971-24808990 None:intergenic 40.0%
GGTTTCCTTGCCGATATAAA+TGG + Chr3:24807580-24807599 MsG0380012804.01.T01:intron 40.0%
GTCGCAAAAGGATTGTCTAA+TGG - Chr3:24808980-24808999 None:intergenic 40.0%
GTTGGTGTAGTTGAAAGATG+GGG - Chr3:24805473-24805492 None:intergenic 40.0%
TAAGAGCTCTTCCCAGTAAA+CGG + Chr3:24807494-24807513 MsG0380012804.01.T01:CDS 40.0%
TAAGCAGTGAGATAAGCGTT+TGG + Chr3:24809960-24809979 MsG0380012804.01.T01:intron 40.0%
TATGATTTCTGATTCTGCCG+TGG + Chr3:24807522-24807541 MsG0380012804.01.T01:intron 40.0%
TCAGCTTCTTTAGTTGAGGT+AGG - Chr3:24810407-24810426 None:intergenic 40.0%
TCCCAGCTTAATATACTGTC+AGG - Chr3:24805709-24805728 None:intergenic 40.0%
TCTAACCTGACTCTTTCAGT+TGG + Chr3:24810341-24810360 MsG0380012804.01.T01:CDS 40.0%
TCTGTAGCATCTCAACAACA+AGG - Chr3:24806759-24806778 None:intergenic 40.0%
TGACTTCGGATGTACACATT+CGG + Chr3:24808601-24808620 MsG0380012804.01.T01:intron 40.0%
TTAAGGGCAGACGTAGTAAA+AGG - Chr3:24810667-24810686 None:intergenic 40.0%
TTGTAGGATTATACAGGTGG+AGG - Chr3:24810539-24810558 None:intergenic 40.0%
TTTAGAAATGTGGGGGATTG+GGG + Chr3:24808711-24808730 MsG0380012804.01.T01:intron 40.0%
! AAGGAAGTGGTTTTTGTTGG+AGG - Chr3:24805551-24805570 None:intergenic 40.0%
! AAGTTTTGCGGCCAAAATCT+AGG - Chr3:24806586-24806605 None:intergenic 40.0%
! ACAAAAGCATGTAAGGAGCT+GGG + Chr3:24807469-24807488 MsG0380012804.01.T01:CDS 40.0%
! ATGTACGTTCATAAGCACTG+TGG + Chr3:24806008-24806027 MsG0380012804.01.T01:intron 40.0%
! CAGCCTTGTACTAAAACAAG+AGG - Chr3:24809258-24809277 None:intergenic 40.0%
! GGTTGGTGTAGTTGAAAGAT+GGG - Chr3:24805474-24805493 None:intergenic 40.0%
! GTTGCCCTTTTAAACTGTCT+TGG - Chr3:24806244-24806263 None:intergenic 40.0%
! TACAAAAGCATGTAAGGAGC+TGG + Chr3:24807468-24807487 MsG0380012804.01.T01:CDS 40.0%
! TGAAAAGGCATGTTCATGTG+TGG + Chr3:24807252-24807271 MsG0380012804.01.T01:intron 40.0%
! TGACTCTACTTCCTTTTCAG+AGG + Chr3:24808821-24808840 MsG0380012804.01.T01:intron 40.0%
! TGTACGTTCATAAGCACTGT+GGG + Chr3:24806009-24806028 MsG0380012804.01.T01:intron 40.0%
! TTATGCCATGGCCTAGATTT+TGG + Chr3:24806572-24806591 MsG0380012804.01.T01:intron 40.0%
! TTTTCGTGACTGCTGTATTG+TGG + Chr3:24808239-24808258 MsG0380012804.01.T01:intron 40.0%
!! CTGAAGATTGTATTGGCTTC+TGG + Chr3:24810495-24810514 MsG0380012804.01.T01:CDS 40.0%
!! GGATTTTGAAGAGGAGAGTT+TGG - Chr3:24805509-24805528 None:intergenic 40.0%
!! GTGGTGTCTTTAAGACATGT+TGG + Chr3:24807271-24807290 MsG0380012804.01.T01:intron 40.0%
!! TAGTTTGTTTGGATTGGCGT+CGG + Chr3:24808098-24808117 MsG0380012804.01.T01:intron 40.0%
!! TCTGGAAGTTTTGTCGCAAA+AGG - Chr3:24808992-24809011 None:intergenic 40.0%
!! TTACGGTGTTACTTGCTGTT+TGG + Chr3:24805967-24805986 MsG0380012804.01.T01:intron 40.0%
!! TTTTGAAGAGGAGAGTTTGG+TGG - Chr3:24805506-24805525 None:intergenic 40.0%
!!! AGATGGGGTTTTGATTCTTG+TGG - Chr3:24805458-24805477 None:intergenic 40.0%
!!! GAAGCCGTGGTTTTAAATAG+TGG + Chr3:24806454-24806473 MsG0380012804.01.T01:intron 40.0%
!!! TTGGATCCCTTTTGAAATCC+AGG - Chr3:24808947-24808966 None:intergenic 40.0%
AACCACGATTGAGGCTTCAT+CGG - Chr3:24806521-24806540 None:intergenic 45.0%
AAGAGCTCTTCCCAGTAAAC+GGG + Chr3:24807495-24807514 MsG0380012804.01.T01:CDS 45.0%
AAGATGCAACAGCCAATCCT+GGG - Chr3:24809451-24809470 None:intergenic 45.0%
AGATGACGTATGGTGTCCTA+TGG - Chr3:24806962-24806981 None:intergenic 45.0%
AGCTGTCACAGTAAATGGTG+AGG - Chr3:24810273-24810292 None:intergenic 45.0%
AGTTGCATTGCAGCTGTTGT+AGG + Chr3:24808068-24808087 MsG0380012804.01.T01:intron 45.0%
ATACTGTCAGGATCAGCTTC+TGG - Chr3:24805697-24805716 None:intergenic 45.0%
ATGCACGTTACAAGACCACT+TGG - Chr3:24807655-24807674 None:intergenic 45.0%
CACAGCCATAACCATAACCA+TGG + Chr3:24805414-24805433 MsG0380012804.01.T01:exon 45.0%
GAAGCAGCTAAGAAAGCTTC+TGG + Chr3:24810434-24810453 MsG0380012804.01.T01:CDS 45.0%
GACAGTTTAAAAGGGCAACC+CGG + Chr3:24806245-24806264 MsG0380012804.01.T01:intron 45.0%
GCCACATCACTAATCAACAC+GGG - Chr3:24807026-24807045 None:intergenic 45.0%
GCTGTCACAGTAAATGGTGA+GGG - Chr3:24810272-24810291 None:intergenic 45.0%
GCTTAGAGTAGCCATGGTTA+TGG - Chr3:24805428-24805447 None:intergenic 45.0%
GGAGCTCTGTTCCATTGAAA+CGG + Chr3:24810307-24810326 MsG0380012804.01.T01:CDS 45.0%
GGCCACATCACTAATCAACA+CGG - Chr3:24807027-24807046 None:intergenic 45.0%
GTACACTTCCAGAAACGTGT+AGG + Chr3:24808686-24808705 MsG0380012804.01.T01:intron 45.0%
GTCTAATGGCAAAAGAGGCT+TGG - Chr3:24808966-24808985 None:intergenic 45.0%
GTTGAAGCTTAGAGTAGCCA+TGG - Chr3:24805434-24805453 None:intergenic 45.0%
TACTGTCAGGATCAGCTTCT+GGG - Chr3:24805696-24805715 None:intergenic 45.0%
TACTTACTCATTGGAAGCCG+TGG + Chr3:24806441-24806460 MsG0380012804.01.T01:intron 45.0%
TAGGATTATACAGGTGGAGG+TGG - Chr3:24810536-24810555 None:intergenic 45.0%
TATTATAGCCGTTCGAGAGG+AGG + Chr3:24809340-24809359 MsG0380012804.01.T01:intron 45.0%
TCAAAGACTGTCTGGTAGAC+CGG + Chr3:24808324-24808343 MsG0380012804.01.T01:intron 45.0%
TCAGCCTCAGAGGAAAGATT+TGG + Chr3:24809365-24809384 MsG0380012804.01.T01:CDS 45.0%
TGGTACTAAGTCCTCACCAT+AGG + Chr3:24806943-24806962 MsG0380012804.01.T01:intron 45.0%
TTGTGGCTGATCACATTACG+AGG + Chr3:24808256-24808275 MsG0380012804.01.T01:intron 45.0%
! ACCCCTAAGCTTTTGATCCA+AGG - Chr3:24807684-24807703 None:intergenic 45.0%
! ATAAGCACTGTGGGACTGTT+TGG + Chr3:24806018-24806037 MsG0380012804.01.T01:intron 45.0%
! CGGTGCTAACTACAAAGTGT+TGG + Chr3:24808344-24808363 MsG0380012804.01.T01:intron 45.0%
! TAAGCACTGTGGGACTGTTT+GGG + Chr3:24806019-24806038 MsG0380012804.01.T01:intron 45.0%
!! AAATCTTTCCTCTGAGGCTG+AGG - Chr3:24809366-24809385 None:intergenic 45.0%
!! AAGCGAATGTTTCTAGGCAC+AGG - Chr3:24805904-24805923 None:intergenic 45.0%
!! GGGTTGGTGTAGTTGAAAGA+TGG - Chr3:24805475-24805494 None:intergenic 45.0%
!! TCCCGTGTTGATTAGTGATG+TGG + Chr3:24807022-24807041 MsG0380012804.01.T01:intron 45.0%
!!! GTTTTGGCGTTGACATGCTA+TGG + Chr3:24808151-24808170 MsG0380012804.01.T01:intron 45.0%
!! ATTTATAAAAAGAAAAAAAA+AGG + Chr3:24807964-24807983 MsG0380012804.01.T01:intron 5.0%
!!! TAATTATTTTTATATACTTT+GGG - Chr3:24806703-24806722 None:intergenic 5.0%
AACAGCCAATCCTGGGATCA+AGG - Chr3:24809444-24809463 None:intergenic 50.0%
ACCACGATTGAGGCTTCATC+GGG - Chr3:24806520-24806539 None:intergenic 50.0%
ACGAGCAGTGTCCGTTTCAA+TGG - Chr3:24810321-24810340 None:intergenic 50.0%
ACGTATGGTGTCCTATGGTG+AGG - Chr3:24806957-24806976 None:intergenic 50.0%
ACTTAAGCTCCCGCATATGC+AGG + Chr3:24806271-24806290 MsG0380012804.01.T01:intron 50.0%
CTTAAGCTCCCGCATATGCA+GGG + Chr3:24806272-24806291 MsG0380012804.01.T01:intron 50.0%
GAAGACCTTGATCCCAGGAT+TGG + Chr3:24809436-24809455 MsG0380012804.01.T01:CDS 50.0%
GAAGATGCAACAGCCAATCC+TGG - Chr3:24809452-24809471 None:intergenic 50.0%
GCAGCTAAGAAAGCTTCTGG+AGG + Chr3:24810437-24810456 MsG0380012804.01.T01:CDS 50.0%
GTAACGTGCATGCCAAACCT+TGG + Chr3:24807664-24807683 MsG0380012804.01.T01:intron 50.0%
!! AGAGTTTGGTGGTGATGACG+GGG - Chr3:24805495-24805514 None:intergenic 50.0%
!! CTTCCTTTTCAGAGGTGCAC+CGG + Chr3:24808829-24808848 MsG0380012804.01.T01:intron 50.0%
!! GAGAGTTTGGTGGTGATGAC+GGG - Chr3:24805496-24805515 None:intergenic 50.0%
!! GGAGAGTTTGGTGGTGATGA+CGG - Chr3:24805497-24805516 None:intergenic 50.0%
ACTAGAGCTCCCGCATATGC+AGG + Chr3:24809563-24809582 MsG0380012804.01.T01:intron 55.0%
ATGCGGGAGCTTAAGTGCAC+CGG - Chr3:24806267-24806286 None:intergenic 55.0%
CATATGCAGGGTTCGGGAAG+GGG + Chr3:24806284-24806303 MsG0380012804.01.T01:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + Chr3:24809564-24809583 MsG0380012804.01.T01:intron 55.0%
CTGCAACGCAACCACGATTG+AGG - Chr3:24806530-24806549 None:intergenic 55.0%
CTTCCCGAACCCTGCATATG+CGG - Chr3:24806284-24806303 None:intergenic 55.0%
GAAATGTGGGGGATTGGGGA+AGG + Chr3:24808715-24808734 MsG0380012804.01.T01:intron 55.0%
GACGAGAAGACCTTGATCCC+AGG + Chr3:24809431-24809450 MsG0380012804.01.T01:CDS 55.0%
GCATATGCAGGGTTCGGGAA+GGG + Chr3:24806283-24806302 MsG0380012804.01.T01:intron 55.0%
GTGTATGTCTGCTGCGTTGC+AGG + Chr3:24807425-24807444 MsG0380012804.01.T01:intron 55.0%
TGCGGCCAAAATCTAGGCCA+TGG - Chr3:24806580-24806599 None:intergenic 55.0%
TTCCCGAACCCTGCATATGC+GGG - Chr3:24806283-24806302 None:intergenic 55.0%
! ACACCGGTGCACCTCTGAAA+AGG - Chr3:24808835-24808854 None:intergenic 55.0%
!! TTTGGTGGTGATGACGGGGT+TGG - Chr3:24805491-24805510 None:intergenic 55.0%
CGCATATGCAGGGTTCGGGA+AGG + Chr3:24806282-24806301 MsG0380012804.01.T01:intron 60.0%
CTCCCGCATATGCAGGGTTC+GGG + Chr3:24806278-24806297 MsG0380012804.01.T01:intron 60.0%
GCCCGATGAAGCCTCAATCG+TGG + Chr3:24806516-24806535 MsG0380012804.01.T01:intron 60.0%
GCTCCCGCATATGCAGGGTT+CGG + Chr3:24806277-24806296 MsG0380012804.01.T01:intron 60.0%
TGACCCGGACCCTGCATATG+CGG - Chr3:24809576-24809595 None:intergenic 60.0%
TGCGGGAGCTTAAGTGCACC+GGG - Chr3:24806266-24806285 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - Chr3:24809559-24809578 None:intergenic 60.0%
AGAGGAGGCCTCAGCCTCAG+AGG + Chr3:24809355-24809374 MsG0380012804.01.T01:CDS 65.0%
CTCCCGCATATGCAGGGTCC+GGG + Chr3:24809570-24809589 MsG0380012804.01.T01:intron 65.0%
GACCCGGACCCTGCATATGC+GGG - Chr3:24809575-24809594 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + Chr3:24809569-24809588 MsG0380012804.01.T01:intron 65.0%
GGCTGAGGCCTCCTCTCGAA+CGG - Chr3:24809351-24809370 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - Chr3:24809558-24809577 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 24805389 24810754 24805389 ID=MsG0380012804.01;Name=MsG0380012804.01
Chr3 mRNA 24805389 24810754 24805389 ID=MsG0380012804.01.T01;Parent=MsG0380012804.01;Name=MsG0380012804.01.T01;_AED=0.49;_eAED=0.49;_QI=44|1|1|1|1|1|5|204|380
Chr3 exon 24805389 24805929 24805389 ID=MsG0380012804.01.T01:exon:16285;Parent=MsG0380012804.01.T01
Chr3 exon 24807447 24807516 24807447 ID=MsG0380012804.01.T01:exon:16286;Parent=MsG0380012804.01.T01
Chr3 exon 24808887 24809058 24808887 ID=MsG0380012804.01.T01:exon:16287;Parent=MsG0380012804.01.T01
Chr3 exon 24809348 24809491 24809348 ID=MsG0380012804.01.T01:exon:16288;Parent=MsG0380012804.01.T01
Chr3 exon 24810291 24810754 24810291 ID=MsG0380012804.01.T01:exon:16289;Parent=MsG0380012804.01.T01
Chr3 five_prime_UTR 24805389 24805432 24805389 ID=MsG0380012804.01.T01:five_prime_utr;Parent=MsG0380012804.01.T01
Chr3 CDS 24805433 24805929 24805433 ID=MsG0380012804.01.T01:cds;Parent=MsG0380012804.01.T01
Chr3 CDS 24807447 24807516 24807447 ID=MsG0380012804.01.T01:cds;Parent=MsG0380012804.01.T01
Chr3 CDS 24808887 24809058 24808887 ID=MsG0380012804.01.T01:cds;Parent=MsG0380012804.01.T01
Chr3 CDS 24809348 24809491 24809348 ID=MsG0380012804.01.T01:cds;Parent=MsG0380012804.01.T01
Chr3 CDS 24810291 24810550 24810291 ID=MsG0380012804.01.T01:cds;Parent=MsG0380012804.01.T01
Chr3 three_prime_UTR 24810551 24810754 24810551 ID=MsG0380012804.01.T01:three_prime_utr;Parent=MsG0380012804.01.T01
Gene Sequence

>MsG0380012804.01.T01

ATGGCTACTCTAAGCTTCAACACCACAAGAATCAAAACCCCATCTTTCAACTACACCAACCCCGTCATCACCACCAAACTCTCCTCTTCAAAATCCATCATCAAATTCCCATTTTCCTCCAACAAAAACCACTTCCTTAAACTCCAAACATGTTCTGTCTCAGAAACCTCATCATCAACAACAACAACACAGAAAGACATTGAAGAAGAAGAAGAAGAAGAAGAGAAAGAAGACCCAACTGCTGAAACATGTTATCTTGACCCAGAAGCTGATCCTGACAGTATATTAAGCTGGGAGTTGGATTTTTGTTCTAGACCAATTCTTGATGCTAGAGGAAAGAAACTTTGGGAGCTTGTTGTTTGTGATAAATCTCTTTCACTTCAATATACTAAGTATTTTCCTAATAATGTTATTAATAGTATCACTCTCAAGGATTCTATTGTTGCTATTTGTGATGAACTGGATCTACCTGTGCCTAGAAACATTCGCTTCTTTAGGTCACAGATGCAAACAATTATTACAAAAGCATGTAAGGAGCTGGGCATAAGAGCTCTTCCCAGTAAACGGTGCTTGTCATTACTTTTATGGTTAGAGGAACGCTATGAGACTGTATACACGAAACATCCTGGATTTCAAAAGGGATCCAAGCCTCTTTTGCCATTAGACAATCCTTTTGCGACAAAACTTCCAGAAGATCTTTTTGGTGAAAGATGGGCTTTTGTTCAGTTACCTTACTCAGCCGTTCGAGAGGAGGCCTCAGCCTCAGAGGAAAGATTTGGATATGGTTCTGGGCTAGATCTTGATTTATTGGGTATTGAAATTGACGAGAAGACCTTGATCCCAGGATTGGCTGTTGCATCTTCTCGTGCTAAAATATTATCAGCTTTTATGAATGGATTGGAGCTCTGTTCCATTGAAACGGACACTGCTCGTTCTAACCTGACTCTTTCAGTTGGAATTTCGACTCGGTATGTATATGCGACCTATAAGAAAAGTCCTACCTCAACTAAAGAAGCTGAAGCTTGGGAAGCAGCTAAGAAAGCTTCTGGAGGTTTGCATTTCCTAGCAATCCAAGATGAGTTAGATTCTGAAGATTGTATTGGCTTCTGGCTTTTGCTAGACTTGCCACCTCCACCTGTATAA

Protein sequence

>MsG0380012804.01.T01

MATLSFNTTRIKTPSFNYTNPVITTKLSSSKSIIKFPFSSNKNHFLKLQTCSVSETSSSTTTTQKDIEEEEEEEEKEDPTAETCYLDPEADPDSILSWELDFCSRPILDARGKKLWELVVCDKSLSLQYTKYFPNNVINSITLKDSIVAICDELDLPVPRNIRFFRSQMQTIITKACKELGIRALPSKRCLSLLLWLEERYETVYTKHPGFQKGSKPLLPLDNPFATKLPEDLFGERWAFVQLPYSAVREEASASEERFGYGSGLDLDLLGIEIDEKTLIPGLAVASSRAKILSAFMNGLELCSIETDTARSNLTLSVGISTRYVYATYKKSPTSTKEAEAWEAAKKASGGLHFLAIQDELDSEDCIGFWLLLDLPPPPV*