Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684180 | XP_013456131.1 | 81.633 | 98 | 16 | 1 | 36 | 131 | 62 | 159 | 1.36e-41 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684180 | sp|P46573|PBL10_ARATH | 60.825 | 97 | 33 | 2 | 37 | 131 | 42 | 135 | 1.07e-26 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684180 | A0A072UKC4 | 81.633 | 98 | 16 | 1 | 36 | 131 | 62 | 159 | 6.51e-42 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0684180 | 0.834798 | 2.433576e-56 | -8.615850e-47 |
| Msa0013050 | Msa0684180 | 0.871357 | 7.269944e-67 | -8.615850e-47 |
| Msa0023000 | Msa0684180 | -0.802369 | 5.795920e-49 | -8.615850e-47 |
| Msa0023830 | Msa0684180 | 0.802690 | 4.977463e-49 | -8.615850e-47 |
| Msa0024210 | Msa0684180 | 0.810950 | 8.934345e-51 | -8.615850e-47 |
| Msa0025730 | Msa0684180 | -0.818272 | 2.136863e-52 | -8.615850e-47 |
| Msa0030380 | Msa0684180 | -0.833441 | 5.322658e-56 | -8.615850e-47 |
| Msa0032610 | Msa0684180 | -0.812120 | 4.974226e-51 | -8.615850e-47 |
| Msa0032840 | Msa0684180 | 0.800569 | 1.355262e-48 | -8.615850e-47 |
| Msa0041620 | Msa0684180 | -0.809231 | 2.095762e-50 | -8.615850e-47 |
| Msa0044710 | Msa0684180 | -0.829584 | 4.743862e-55 | -8.615850e-47 |
| Msa0091570 | Msa0684180 | -0.800308 | 1.531559e-48 | -8.615850e-47 |
| Msa0094950 | Msa0684180 | -0.814866 | 1.238813e-51 | -8.615850e-47 |
| Msa0095380 | Msa0684180 | -0.810585 | 1.071519e-50 | -8.615850e-47 |
| Msa0115270 | Msa0684180 | -0.801461 | 8.906792e-49 | -8.615850e-47 |
| Msa0119850 | Msa0684180 | -0.800145 | 1.653247e-48 | -8.615850e-47 |
| Msa0607340 | Msa0684180 | 0.876278 | 1.586098e-68 | -8.615850e-47 |
| Msa0618010 | Msa0684180 | -0.817314 | 3.516656e-52 | -8.615850e-47 |
| Msa0619070 | Msa0684180 | -0.825190 | 5.365441e-54 | -8.615850e-47 |
| Msa0627910 | Msa0684180 | -0.800906 | 1.157046e-48 | -8.615850e-47 |
| Msa0638280 | Msa0684180 | -0.803108 | 4.079581e-49 | -8.615850e-47 |
| Msa0638320 | Msa0684180 | -0.806848 | 6.740612e-50 | -8.615850e-47 |
| Msa0646640 | Msa0684180 | -0.801999 | 6.905989e-49 | -8.615850e-47 |
| Msa0647450 | Msa0684180 | 0.876329 | 1.522380e-68 | -8.615850e-47 |
| Msa0650190 | Msa0684180 | -0.810115 | 1.353467e-50 | -8.615850e-47 |
| Msa0654760 | Msa0684180 | 0.837877 | 4.009566e-57 | -8.615850e-47 |
| Msa0655660 | Msa0684180 | 0.802128 | 6.497319e-49 | -8.615850e-47 |
| Msa0661190 | Msa0684180 | 0.833475 | 5.219510e-56 | -8.615850e-47 |
| Msa0669850 | Msa0684180 | -0.838799 | 2.319497e-57 | -8.615850e-47 |
| Msa0671740 | Msa0684180 | -0.804579 | 2.018831e-49 | -8.615850e-47 |
| Msa0673010 | Msa0684180 | 0.819337 | 1.224924e-52 | -8.615850e-47 |
| Msa0677270 | Msa0684180 | -0.809432 | 1.897740e-50 | -8.615850e-47 |
| Msa0677290 | Msa0684180 | -0.805072 | 1.592802e-49 | -8.615850e-47 |
| Msa0684180 | Msa0684190 | 0.822720 | 2.036795e-53 | -8.615850e-47 |
| Msa0684180 | Msa0698060 | -0.811989 | 5.311291e-51 | -8.615850e-47 |
| Msa0684180 | Msa0709500 | -0.805409 | 1.353548e-49 | -8.615850e-47 |
| Msa0684180 | Msa0713820 | -0.800004 | 1.766544e-48 | -8.615850e-47 |
| Msa0684180 | Msa0743260 | -0.802593 | 5.211494e-49 | -8.615850e-47 |
| Msa0684180 | Msa0743720 | -0.806449 | 8.181099e-50 | -8.615850e-47 |
| Msa0684180 | Msa0754720 | 0.802322 | 5.926756e-49 | -8.615850e-47 |
| Msa0684180 | Msa0756630 | 0.803039 | 4.216434e-49 | -8.615850e-47 |
| Msa0684180 | Msa0784860 | -0.821173 | 4.647161e-53 | -8.615850e-47 |
| Msa0684180 | Msa0790390 | 0.839590 | 1.446595e-57 | -8.615850e-47 |
| Msa0684180 | Msa0790660 | 0.800740 | 1.250508e-48 | -8.615850e-47 |
| Msa0684180 | Msa0790850 | -0.807962 | 3.911349e-50 | -8.615850e-47 |
| Msa0684180 | Msa0791820 | -0.803540 | 3.320076e-49 | -8.615850e-47 |
| Msa0684180 | Msa0798440 | -0.801082 | 1.065026e-48 | -8.615850e-47 |
| Msa0684180 | Msa0812570 | -0.805103 | 1.569278e-49 | -8.615850e-47 |
| Msa0684180 | Msa0813720 | -0.827544 | 1.475352e-54 | -8.615850e-47 |
| Msa0684180 | Msa0831870 | -0.819567 | 1.085305e-52 | -8.615850e-47 |
| Msa0684180 | Msa0837350 | 0.803627 | 3.185116e-49 | -8.615850e-47 |
| Msa0684180 | Msa0847080 | -0.811058 | 8.462684e-51 | -8.615850e-47 |
| Msa0684180 | Msa0850960 | -0.800333 | 1.513877e-48 | -8.615850e-47 |
| Msa0684180 | Msa0860900 | 0.813880 | 2.045406e-51 | -8.615850e-47 |
| Msa0684180 | Msa0861040 | 0.817567 | 3.084181e-52 | -8.615850e-47 |
| Msa0684180 | Msa0867050 | 0.822260 | 2.605602e-53 | -8.615850e-47 |
| Msa0684180 | Msa0870150 | -0.811034 | 8.566115e-51 | -8.615850e-47 |
| Msa0684180 | Msa0874500 | -0.807222 | 5.615708e-50 | -8.615850e-47 |
| Msa0684180 | Msa0899240 | 0.814918 | 1.205959e-51 | -8.615850e-47 |
| Msa0684180 | Msa0900630 | -0.804459 | 2.138455e-49 | -8.615850e-47 |
| Msa0684180 | Msa0926460 | -0.826787 | 2.239958e-54 | -8.615850e-47 |
| Msa0684180 | Msa0965860 | -0.828748 | 7.566035e-55 | -8.615850e-47 |
| Msa0684180 | Msa0974810 | -0.810628 | 1.048781e-50 | -8.615850e-47 |
| Msa0684180 | Msa0999050 | 0.805041 | 1.616455e-49 | -8.615850e-47 |
| Msa0684180 | Msa1000690 | -0.808328 | 3.268660e-50 | -8.615850e-47 |
| Msa0684180 | Msa1004900 | 0.830012 | 3.731814e-55 | -8.615850e-47 |
| Msa0684180 | Msa1007610 | 0.838782 | 2.344213e-57 | -8.615850e-47 |
| Msa0684180 | Msa1012830 | -0.815589 | 8.554558e-52 | -8.615850e-47 |
| Msa0684180 | Msa1037700 | 0.806004 | 1.015430e-49 | -8.615850e-47 |
| Msa0684180 | Msa1051200 | -0.809962 | 1.459650e-50 | -8.615850e-47 |
| Msa0684180 | Msa1067440 | 0.810445 | 1.148871e-50 | -8.615850e-47 |
| Msa0684180 | Msa1069660 | 0.827799 | 1.281416e-54 | -8.615850e-47 |
| Msa0684180 | Msa1072460 | 0.865556 | 5.422121e-65 | -8.615850e-47 |
| Msa0684180 | Msa1084470 | -0.811537 | 6.661106e-51 | -8.615850e-47 |
| Msa0684180 | Msa1089840 | -0.825687 | 4.092406e-54 | -8.615850e-47 |
| Msa0684180 | Msa1116130 | 0.802268 | 6.080891e-49 | -8.615850e-47 |
| Msa0684180 | Msa1126120 | 0.830803 | 2.390789e-55 | -8.615850e-47 |
| Msa0684180 | Msa1130210 | 0.835146 | 1.989075e-56 | -8.615850e-47 |
| Msa0684180 | Msa1143930 | 0.846594 | 1.968923e-59 | -8.615850e-47 |
| Msa0684180 | Msa1157420 | 0.819450 | 1.154016e-52 | -8.615850e-47 |
| Msa0684180 | Msa1166010 | -0.800623 | 1.321237e-48 | -8.615850e-47 |
| Msa0684180 | Msa1171360 | -0.805890 | 1.072708e-49 | -8.615850e-47 |
| Msa0684180 | Msa1171870 | -0.823037 | 1.718188e-53 | -8.615850e-47 |
| Msa0684180 | Msa1187520 | -0.817238 | 3.658658e-52 | -8.615850e-47 |
| Msa0684180 | Msa1190890 | 0.820389 | 7.037174e-53 | -8.615850e-47 |
| Msa0684180 | Msa1191470 | 0.831944 | 1.252523e-55 | -8.615850e-47 |
| Msa0684180 | Msa1193950 | 0.811378 | 7.213631e-51 | -8.615850e-47 |
| Msa0684180 | Msa1204250 | -0.809709 | 1.654546e-50 | -8.615850e-47 |
| Msa0684180 | Msa1207270 | -0.804832 | 1.787257e-49 | -8.615850e-47 |
| Msa0684180 | Msa1217430 | 0.837455 | 5.144769e-57 | -8.615850e-47 |
| Msa0684180 | Msa1217830 | -0.816893 | 4.372223e-52 | -8.615850e-47 |
| Msa0684180 | Msa1237940 | -0.805750 | 1.147852e-49 | -8.615850e-47 |
| Msa0684180 | Msa1246530 | 0.804666 | 1.936003e-49 | -8.615850e-47 |
| Msa0684180 | Msa1260130 | -0.828665 | 7.921558e-55 | -8.615850e-47 |
| Msa0684180 | Msa1267260 | -0.824699 | 7.004994e-54 | -8.615850e-47 |
| Msa0684180 | Msa1269300 | -0.828637 | 8.050307e-55 | -8.615850e-47 |
| Msa0684180 | Msa1269580 | 0.818592 | 1.808556e-52 | -8.615850e-47 |
| Msa0684180 | Msa1270960 | 0.839376 | 1.644276e-57 | -8.615850e-47 |
| Msa0684180 | Msa1282920 | -0.818201 | 2.217822e-52 | -8.615850e-47 |
| Msa0684180 | Msa1294610 | 0.812622 | 3.863998e-51 | -8.615850e-47 |
| Msa0684180 | Msa1299180 | 0.800524 | 1.384413e-48 | -8.615850e-47 |
| Msa0684180 | Msa1299290 | 0.800080 | 1.704154e-48 | -8.615850e-47 |
| Msa0684180 | Msa1300050 | -0.808290 | 3.331130e-50 | -8.615850e-47 |
| Msa0684180 | Msa1300350 | 0.811846 | 5.706171e-51 | -8.615850e-47 |
| Msa0684180 | Msa1302190 | 0.853316 | 2.590117e-61 | -8.615850e-47 |
| Msa0684180 | Msa1306430 | -0.824241 | 8.980651e-54 | -8.615850e-47 |
| Msa0684180 | Msa1308080 | 0.834828 | 2.391311e-56 | -8.615850e-47 |
| Msa0684180 | Msa1316830 | -0.805665 | 1.196452e-49 | -8.615850e-47 |
| Msa0684180 | Msa1322190 | -0.811522 | 6.711961e-51 | -8.615850e-47 |
| Msa0684180 | Msa1332040 | 0.813700 | 2.241054e-51 | -8.615850e-47 |
| Msa0684180 | Msa1333110 | -0.808792 | 2.601989e-50 | -8.615850e-47 |
| Msa0684180 | Msa1336950 | -0.801633 | 8.212432e-49 | -8.615850e-47 |
| Msa0684180 | Msa1358610 | 0.813595 | 2.364485e-51 | -8.615850e-47 |
| Msa0684180 | Msa1369530 | -0.809163 | 2.167834e-50 | -8.615850e-47 |
| Msa0684180 | Msa1382410 | -0.808447 | 3.083212e-50 | -8.615850e-47 |
| Msa0684180 | Msa1403580 | 0.847889 | 8.690218e-60 | -8.615850e-47 |
| Msa0684180 | Msa1403930 | 0.843786 | 1.131301e-58 | -8.615850e-47 |
| Msa0684180 | Msa1410100 | -0.806297 | 8.810515e-50 | -8.615850e-47 |
| Msa0684180 | Msa1410430 | 0.821752 | 3.415902e-53 | -8.615850e-47 |
| Msa0684180 | Msa1415240 | 0.802368 | 5.800686e-49 | -8.615850e-47 |
| Msa0684180 | Msa1419800 | 0.822357 | 2.473982e-53 | -8.615850e-47 |
| Msa0684180 | Msa1429360 | 0.820497 | 6.650218e-53 | -8.615850e-47 |
| Msa0684180 | Msa1439960 | -0.810564 | 1.082502e-50 | -8.615850e-47 |
| Msa0684180 | Msa1440000 | -0.814868 | 1.237481e-51 | -8.615850e-47 |
| Msa0684180 | Msa1443290 | 0.837798 | 4.202252e-57 | -8.615850e-47 |
| Msa0684180 | Msa1444310 | -0.806352 | 8.576681e-50 | -8.615850e-47 |
| Msa0684180 | Msa1453620 | -0.808678 | 2.752974e-50 | -8.615850e-47 |
| Msa0684180 | Msa1453780 | 0.826222 | 3.053676e-54 | -8.615850e-47 |
| Msa0684180 | Msa1464830 | -0.812692 | 3.731441e-51 | -8.615850e-47 |
| Msa0684180 | Msa1465960 | -0.840713 | 7.365862e-58 | -8.615850e-47 |
| Msa0140520 | Msa0684180 | 0.804555 | 2.041886e-49 | -8.615850e-47 |
| Msa0143080 | Msa0684180 | -0.829347 | 5.415916e-55 | -8.615850e-47 |
| Msa0148120 | Msa0684180 | -0.812420 | 4.278661e-51 | -8.615850e-47 |
| Msa0156650 | Msa0684180 | 0.839903 | 1.199634e-57 | -8.615850e-47 |
| Msa0160550 | Msa0684180 | -0.804220 | 2.397791e-49 | -8.615850e-47 |
| Msa0162770 | Msa0684180 | 0.853335 | 2.558004e-61 | -8.615850e-47 |
| Msa0168640 | Msa0684180 | 0.836486 | 9.100202e-57 | -8.615850e-47 |
| Msa0169140 | Msa0684180 | 0.809369 | 1.957773e-50 | -8.615850e-47 |
| Msa0172780 | Msa0684180 | -0.803063 | 4.167555e-49 | -8.615850e-47 |
| Msa0173740 | Msa0684180 | -0.839350 | 1.669791e-57 | -8.615850e-47 |
| Msa0173820 | Msa0684180 | -0.836509 | 8.977125e-57 | -8.615850e-47 |
| Msa0173830 | Msa0684180 | -0.819337 | 1.224510e-52 | -8.615850e-47 |
| Msa0182930 | Msa0684180 | -0.800448 | 1.434358e-48 | -8.615850e-47 |
| Msa0188680 | Msa0684180 | 0.831087 | 2.035655e-55 | -8.615850e-47 |
| Msa0194480 | Msa0684180 | -0.810611 | 1.057690e-50 | -8.615850e-47 |
| Msa0194970 | Msa0684180 | -0.811731 | 6.047329e-51 | -8.615850e-47 |
| Msa0196130 | Msa0684180 | 0.805851 | 1.093179e-49 | -8.615850e-47 |
| Msa0200950 | Msa0684180 | 0.829415 | 5.214566e-55 | -8.615850e-47 |
| Msa0229490 | Msa0684180 | 0.817891 | 2.606815e-52 | -8.615850e-47 |
| Msa0231880 | Msa0684180 | -0.800289 | 1.545181e-48 | -8.615850e-47 |
| Msa0236270 | Msa0684180 | -0.804577 | 2.020995e-49 | -8.615850e-47 |
| Msa0236980 | Msa0684180 | -0.835687 | 1.451137e-56 | -8.615850e-47 |
| Msa0238070 | Msa0684180 | 0.820605 | 6.280118e-53 | -8.615850e-47 |
| Msa0238250 | Msa0684180 | 0.829342 | 5.431985e-55 | -8.615850e-47 |
| Msa0366890 | Msa0684180 | -0.801431 | 9.035792e-49 | -8.615850e-47 |
| Msa0379410 | Msa0684180 | -0.823459 | 1.369615e-53 | -8.615850e-47 |
| Msa0380040 | Msa0684180 | -0.806623 | 7.517493e-50 | -8.615850e-47 |
| Msa0388050 | Msa0684180 | -0.806960 | 6.382047e-50 | -8.615850e-47 |
| Msa0398950 | Msa0684180 | -0.820167 | 7.915028e-53 | -8.615850e-47 |
| Msa0414950 | Msa0684180 | 0.821655 | 3.596929e-53 | -8.615850e-47 |
| Msa0421780 | Msa0684180 | 0.825218 | 5.283497e-54 | -8.615850e-47 |
| Msa0423360 | Msa0684180 | 0.806288 | 8.845619e-50 | -8.615850e-47 |
| Msa0429290 | Msa0684180 | -0.817660 | 2.938507e-52 | -8.615850e-47 |
| Msa0436280 | Msa0684180 | 0.820460 | 6.779815e-53 | -8.615850e-47 |
| Msa0440130 | Msa0684180 | 0.801174 | 1.019917e-48 | -8.615850e-47 |
| Msa0442200 | Msa0684180 | -0.808641 | 2.802885e-50 | -8.615850e-47 |
| Msa0458060 | Msa0684180 | -0.810519 | 1.107194e-50 | -8.615850e-47 |
| Msa0465790 | Msa0684180 | -0.820185 | 7.838524e-53 | -8.615850e-47 |
| Msa0467900 | Msa0684180 | 0.822546 | 2.236162e-53 | -8.615850e-47 |
| Msa0467960 | Msa0684180 | 0.807675 | 4.501720e-50 | -8.615850e-47 |
| Msa0469910 | Msa0684180 | 0.813679 | 2.265509e-51 | -8.615850e-47 |
| Msa0471590 | Msa0684180 | -0.816344 | 5.804399e-52 | -8.615850e-47 |
| Msa0475580 | Msa0684180 | -0.814299 | 1.653886e-51 | -8.615850e-47 |
| Msa0244270 | Msa0684180 | -0.817438 | 3.297519e-52 | -8.615850e-47 |
| Msa0255080 | Msa0684180 | -0.832867 | 7.398404e-56 | -8.615850e-47 |
| Msa0258670 | Msa0684180 | 0.818423 | 1.975117e-52 | -8.615850e-47 |
| Msa0259370 | Msa0684180 | -0.813686 | 2.257792e-51 | -8.615850e-47 |
| Msa0260240 | Msa0684180 | -0.820106 | 8.172176e-53 | -8.615850e-47 |
| Msa0260280 | Msa0684180 | -0.819431 | 1.165677e-52 | -8.615850e-47 |
| Msa0262310 | Msa0684180 | -0.821002 | 5.087808e-53 | -8.615850e-47 |
| Msa0270220 | Msa0684180 | 0.838641 | 2.549487e-57 | -8.615850e-47 |
| Msa0294560 | Msa0684180 | 0.829132 | 6.109301e-55 | -8.615850e-47 |
| Msa0304260 | Msa0684180 | -0.805330 | 1.406390e-49 | -8.615850e-47 |
| Msa0304330 | Msa0684180 | -0.803968 | 2.705476e-49 | -8.615850e-47 |
| Msa0307830 | Msa0684180 | 0.837139 | 6.198457e-57 | -8.615850e-47 |
| Msa0326670 | Msa0684180 | -0.814446 | 1.534376e-51 | -8.615850e-47 |
| Msa0328210 | Msa0684180 | -0.828557 | 8.412433e-55 | -8.615850e-47 |
| Msa0337650 | Msa0684180 | -0.815603 | 8.493763e-52 | -8.615850e-47 |
| Msa0347680 | Msa0684180 | -0.801692 | 7.986737e-49 | -8.615850e-47 |
| Msa0358170 | Msa0684180 | -0.815456 | 9.159331e-52 | -8.615850e-47 |
| Msa0509390 | Msa0684180 | -0.815273 | 1.005934e-51 | -8.615850e-47 |
| Msa0519220 | Msa0684180 | -0.820573 | 6.385554e-53 | -8.615850e-47 |
| Msa0534900 | Msa0684180 | -0.802743 | 4.852762e-49 | -8.615850e-47 |
| Msa0535030 | Msa0684180 | -0.823251 | 1.531740e-53 | -8.615850e-47 |
| Msa0535060 | Msa0684180 | -0.823022 | 1.732551e-53 | -8.615850e-47 |
| Msa0553220 | Msa0684180 | 0.893459 | 6.161580e-75 | -8.615850e-47 |
| Msa0562300 | Msa0684180 | 0.805947 | 1.043686e-49 | -8.615850e-47 |
| Msa0568820 | Msa0684180 | -0.813987 | 1.937962e-51 | -8.615850e-47 |
| Msa0586520 | Msa0684180 | 0.800103 | 1.686163e-48 | -8.615850e-47 |
| Msa0590680 | Msa0684180 | -0.836115 | 1.130624e-56 | -8.615850e-47 |
| Msa0591060 | Msa0684180 | -0.820656 | 6.111624e-53 | -8.615850e-47 |
| Msa0591770 | Msa0684180 | -0.831110 | 2.010247e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684180 | MtrunA17_Chr4g0031561 | 81.633 | 98 | 16 | 1 | 36 | 131 | 62 | 159 | 1.25e-45 | 157 |
| Msa0684180 | MtrunA17_Chr4g0031571 | 69.072 | 97 | 28 | 1 | 37 | 131 | 65 | 161 | 1.53e-34 | 127 |
| Msa0684180 | MtrunA17_Chr4g0031541 | 70.000 | 90 | 25 | 1 | 44 | 131 | 59 | 148 | 6.77e-33 | 123 |
| Msa0684180 | MtrunA17_Chr2g0328171 | 57.282 | 103 | 42 | 1 | 21 | 121 | 28 | 130 | 6.17e-29 | 112 |
| Msa0684180 | MtrunA17_Chr7g0238671 | 46.715 | 137 | 57 | 3 | 10 | 131 | 4 | 139 | 5.46e-27 | 107 |
| Msa0684180 | MtrunA17_Chr4g0031591 | 60.000 | 100 | 34 | 2 | 34 | 131 | 63 | 158 | 1.92e-25 | 103 |
| Msa0684180 | MtrunA17_Chr5g0435211 | 45.378 | 119 | 59 | 2 | 19 | 131 | 23 | 141 | 4.18e-24 | 99.4 |
| Msa0684180 | MtrunA17_Chr2g0328211 | 56.383 | 94 | 39 | 1 | 30 | 121 | 24 | 117 | 5.35e-24 | 98.2 |
| Msa0684180 | MtrunA17_Chr5g0416311 | 43.519 | 108 | 58 | 2 | 42 | 146 | 51 | 158 | 9.94e-22 | 92.8 |
| Msa0684180 | MtrunA17_Chr3g0111631 | 50.000 | 92 | 44 | 1 | 42 | 131 | 51 | 142 | 3.45e-21 | 91.3 |
| Msa0684180 | MtrunA17_Chr3g0111581 | 43.590 | 117 | 63 | 2 | 17 | 131 | 20 | 135 | 8.98e-20 | 86.7 |
| Msa0684180 | MtrunA17_Chr3g0111591 | 44.231 | 104 | 56 | 1 | 30 | 131 | 16 | 119 | 4.60e-18 | 79.7 |
| Msa0684180 | MtrunA17_Chr4g0060531 | 38.793 | 116 | 65 | 3 | 37 | 146 | 49 | 164 | 2.43e-17 | 80.1 |
| Msa0684180 | MtrunA17_Chr4g0071481 | 38.095 | 126 | 77 | 1 | 25 | 150 | 82 | 206 | 2.89e-17 | 80.1 |
| Msa0684180 | MtrunA17_Chr7g0216551 | 47.191 | 89 | 45 | 1 | 35 | 121 | 91 | 179 | 6.04e-17 | 79.3 |
| Msa0684180 | MtrunA17_Chr8g0362661 | 45.882 | 85 | 44 | 1 | 39 | 121 | 106 | 190 | 9.58e-16 | 75.9 |
| Msa0684180 | MtrunA17_Chr5g0416011 | 45.882 | 85 | 44 | 1 | 39 | 121 | 108 | 192 | 1.19e-15 | 75.5 |
| Msa0684180 | MtrunA17_Chr8g0370461 | 41.111 | 90 | 51 | 1 | 44 | 131 | 69 | 158 | 4.77e-15 | 73.6 |
| Msa0684180 | MtrunA17_Chr5g0448661 | 48.611 | 72 | 34 | 1 | 44 | 115 | 82 | 150 | 1.73e-14 | 72.0 |
| Msa0684180 | MtrunA17_Chr3g0093381 | 42.667 | 75 | 41 | 1 | 49 | 121 | 90 | 164 | 4.09e-14 | 70.9 |
| Msa0684180 | MtrunA17_Chr2g0328181 | 67.347 | 49 | 16 | 0 | 30 | 78 | 24 | 72 | 2.46e-13 | 63.2 |
| Msa0684180 | MtrunA17_Chr4g0064201 | 44.186 | 86 | 46 | 1 | 32 | 115 | 76 | 161 | 3.76e-13 | 68.2 |
| Msa0684180 | MtrunA17_Chr3g0143951 | 47.500 | 80 | 40 | 1 | 38 | 115 | 53 | 132 | 4.52e-13 | 67.8 |
| Msa0684180 | MtrunA17_Chr5g0406841 | 33.645 | 107 | 58 | 2 | 17 | 121 | 107 | 202 | 8.92e-13 | 67.0 |
| Msa0684180 | MtrunA17_Chr6g0452761 | 38.095 | 105 | 62 | 2 | 45 | 146 | 111 | 215 | 1.01e-12 | 67.0 |
| Msa0684180 | MtrunA17_Chr3g0111601 | 36.567 | 134 | 81 | 3 | 1 | 131 | 13 | 145 | 2.65e-12 | 62.8 |
| Msa0684180 | MtrunA17_Chr5g0441021 | 41.333 | 75 | 42 | 1 | 49 | 121 | 52 | 126 | 2.71e-12 | 65.5 |
| Msa0684180 | MtrunA17_Chr7g0245571 | 42.308 | 78 | 44 | 1 | 54 | 131 | 78 | 154 | 3.66e-12 | 65.1 |
| Msa0684180 | MtrunA17_Chr6g0453001 | 35.644 | 101 | 62 | 2 | 49 | 146 | 36 | 136 | 4.69e-11 | 62.0 |
| Msa0684180 | MtrunA17_Chr8g0388941 | 39.560 | 91 | 52 | 2 | 50 | 140 | 54 | 141 | 5.31e-11 | 61.6 |
| Msa0684180 | MtrunA17_Chr3g0104091 | 35.000 | 100 | 62 | 2 | 50 | 146 | 36 | 135 | 5.71e-11 | 61.6 |
| Msa0684180 | MtrunA17_Chr8g0370571 | 39.241 | 79 | 46 | 1 | 45 | 121 | 34 | 112 | 6.42e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684180 | AT2G28930.2 | 60.825 | 97 | 33 | 2 | 37 | 131 | 42 | 135 | 1.09e-27 | 109 |
| Msa0684180 | AT2G28930.1 | 60.825 | 97 | 33 | 2 | 37 | 131 | 53 | 146 | 1.14e-27 | 109 |
| Msa0684180 | AT2G28930.3 | 60.825 | 97 | 33 | 2 | 37 | 131 | 45 | 138 | 1.45e-27 | 109 |
| Msa0684180 | AT1G07570.3 | 50.806 | 124 | 55 | 3 | 2 | 121 | 14 | 135 | 8.89e-27 | 107 |
| Msa0684180 | AT1G07570.1 | 48.361 | 122 | 54 | 2 | 9 | 121 | 3 | 124 | 1.87e-26 | 106 |
| Msa0684180 | AT1G07570.5 | 48.361 | 122 | 54 | 2 | 9 | 121 | 3 | 124 | 1.87e-26 | 106 |
| Msa0684180 | AT1G07570.2 | 48.361 | 122 | 54 | 2 | 9 | 121 | 3 | 124 | 1.87e-26 | 106 |
| Msa0684180 | AT5G02290.2 | 52.041 | 98 | 42 | 2 | 36 | 131 | 40 | 134 | 6.48e-24 | 99.0 |
| Msa0684180 | AT5G02290.1 | 52.041 | 98 | 42 | 2 | 36 | 131 | 40 | 134 | 6.48e-24 | 99.0 |
| Msa0684180 | AT2G02800.1 | 45.614 | 114 | 56 | 3 | 36 | 146 | 55 | 165 | 7.49e-21 | 90.9 |
| Msa0684180 | AT2G02800.2 | 45.614 | 114 | 56 | 3 | 36 | 146 | 55 | 165 | 7.49e-21 | 90.9 |
| Msa0684180 | AT2G39660.1 | 47.475 | 99 | 50 | 1 | 35 | 131 | 35 | 133 | 2.13e-20 | 89.4 |
| Msa0684180 | AT1G14370.1 | 48.421 | 95 | 47 | 1 | 39 | 131 | 58 | 152 | 1.78e-19 | 86.7 |
| Msa0684180 | AT1G26970.1 | 41.071 | 112 | 59 | 3 | 31 | 140 | 50 | 156 | 5.18e-19 | 85.5 |
| Msa0684180 | AT3G55450.2 | 44.565 | 92 | 49 | 1 | 42 | 131 | 73 | 164 | 6.31e-18 | 82.4 |
| Msa0684180 | AT3G55450.1 | 44.565 | 92 | 49 | 1 | 42 | 131 | 36 | 127 | 6.96e-18 | 82.0 |
| Msa0684180 | AT1G69790.2 | 48.718 | 78 | 38 | 1 | 42 | 117 | 48 | 125 | 2.35e-16 | 77.4 |
| Msa0684180 | AT1G69790.1 | 48.718 | 78 | 38 | 1 | 42 | 117 | 59 | 136 | 3.52e-16 | 77.0 |
| Msa0684180 | AT3G28690.1 | 45.556 | 90 | 47 | 1 | 44 | 131 | 3 | 92 | 1.57e-15 | 75.1 |
| Msa0684180 | AT3G28690.3 | 45.556 | 90 | 47 | 1 | 44 | 131 | 52 | 141 | 2.79e-15 | 74.7 |
| Msa0684180 | AT3G28690.2 | 45.556 | 90 | 47 | 1 | 44 | 131 | 103 | 192 | 3.04e-15 | 74.7 |
| Msa0684180 | AT2G17220.1 | 46.575 | 73 | 39 | 0 | 43 | 115 | 63 | 135 | 5.91e-15 | 73.6 |
| Msa0684180 | AT2G17220.2 | 46.575 | 73 | 39 | 0 | 43 | 115 | 62 | 134 | 6.19e-15 | 73.6 |
| Msa0684180 | AT3G01300.1 | 39.000 | 100 | 58 | 2 | 50 | 146 | 119 | 218 | 2.19e-14 | 72.4 |
| Msa0684180 | AT5G15080.1 | 46.835 | 79 | 40 | 1 | 45 | 121 | 120 | 198 | 2.56e-14 | 72.0 |
| Msa0684180 | AT1G76360.1 | 47.500 | 80 | 39 | 2 | 38 | 115 | 135 | 213 | 1.96e-13 | 69.3 |
| Msa0684180 | AT4G35600.2 | 37.500 | 80 | 48 | 1 | 44 | 121 | 64 | 143 | 5.05e-11 | 62.4 |
| Msa0684180 | AT4G35600.1 | 37.500 | 80 | 48 | 1 | 44 | 121 | 63 | 142 | 5.14e-11 | 62.4 |
| Msa0684180 | AT5G01020.1 | 36.634 | 101 | 63 | 1 | 31 | 131 | 33 | 132 | 5.94e-11 | 62.0 |
Find 56 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAATTCCCACTTTGTT+GGG | 0.187375 | 4_4:+47496632 | Msa0684180:CDS |
| CAAAGTAAAACTCTTTAAAT+TGG | 0.195203 | 4_4:-47498162 | None:intergenic |
| GTGTTAGGAGATGGCGATTT+TGG | 0.229410 | 4_4:+47498227 | Msa0684180:CDS |
| TCAGCTTCCAAACGTGATTT+CGG | 0.315541 | 4_4:+47499093 | Msa0684180:CDS |
| GTCCTCAATTCCCACTTTGT+TGG | 0.346869 | 4_4:+47496631 | Msa0684180:CDS |
| ACAGAAAATACGGCGAAGTA+TGG | 0.366170 | 4_4:-47499275 | None:intergenic |
| TTTCGTGTAGACATTGTGTT+AGG | 0.390604 | 4_4:+47498212 | Msa0684180:CDS |
| CAAAAGTCACAACGAGTTGA+TGG | 0.413811 | 4_4:+47498343 | Msa0684180:CDS |
| AGATGGATTGCGTTTACAAC+AGG | 0.420127 | 4_4:-47498960 | None:intergenic |
| TCTAACTGTGAACATGAACT+TGG | 0.432737 | 4_4:+47496608 | None:intergenic |
| TGTTGGGGTTGCAAGTTAAG+AGG | 0.439925 | 4_4:+47496648 | Msa0684180:CDS |
| ACTTTGTTCGTACCTGTTGT+TGG | 0.440456 | 4_4:+47499230 | Msa0684180:CDS |
| AGAAACACATGTGCCAGGTT+TGG | 0.457397 | 4_4:-47498294 | None:intergenic |
| TCACCTTCTGCTGCCAAACC+TGG | 0.458248 | 4_4:+47498281 | Msa0684180:CDS |
| AGTAACACCGAAATCACGTT+TGG | 0.459010 | 4_4:-47499100 | None:intergenic |
| TCTGCAGGTGATGAAGAATC+TGG | 0.474685 | 4_4:-47499017 | None:intergenic |
| CCTCAATTCCCACTTTGTTG+GGG | 0.498318 | 4_4:+47496633 | Msa0684180:CDS |
| CAAATCACGAACAGAAAATA+CGG | 0.513249 | 4_4:-47499285 | None:intergenic |
| AAATCTCAAACACCAACAAC+AGG | 0.513410 | 4_4:-47499242 | None:intergenic |
| TTGACAGAAACACATGTGCC+AGG | 0.516657 | 4_4:-47498299 | None:intergenic |
| CGGAGGAGAGGGCACAGAGG+CGG | 0.522290 | 4_4:-47499057 | None:intergenic |
| TTGGATCAGTCTTTAAGGGC+CGG | 0.528822 | 4_4:+47498246 | Msa0684180:CDS |
| CCTTCTCAGTATCGGTGCCA+CGG | 0.528984 | 4_4:+47498105 | Msa0684180:intron |
| AAGGTGAGTGTTCATCAATC+CGG | 0.530920 | 4_4:-47498265 | None:intergenic |
| GCCACGGACTCTCCCATGTG+AGG | 0.531223 | 4_4:+47498121 | Msa0684180:CDS |
| CGTAATCGCGGCGGAGGAGA+GGG | 0.540960 | 4_4:-47499068 | None:intergenic |
| CCACGGACTCTCCCATGTGA+GGG | 0.542943 | 4_4:+47498122 | Msa0684180:CDS |
| CTGATTCGTAATCGCGGCGG+AGG | 0.543080 | 4_4:-47499074 | None:intergenic |
| TTACAACAGGTGTTGTTCGT+CGG | 0.545331 | 4_4:-47498947 | None:intergenic |
| GAAGCGTCGGAACAGAGCAC+TGG | 0.546271 | 4_4:-47499127 | None:intergenic |
| CGGTACAGATCGGAATCTGC+AGG | 0.548388 | 4_4:-47499032 | None:intergenic |
| CCCTCACATGGGAGAGTCCG+TGG | 0.551473 | 4_4:-47498122 | None:intergenic |
| AAGTTAAGAGGAGATGATGA+GGG | 0.552476 | 4_4:+47496660 | Msa0684180:CDS |
| GTTAAGAGGAGATGATGAGG+GGG | 0.557840 | 4_4:+47496662 | Msa0684180:CDS |
| CACGGACTCTCCCATGTGAG+GGG | 0.560737 | 4_4:+47498123 | Msa0684180:CDS |
| CGGCGAAGTATGGTTACAAA+CGG | 0.563721 | 4_4:-47499265 | None:intergenic |
| CAACAGGTGTTGTTCGTCGG+CGG | 0.568383 | 4_4:-47498944 | None:intergenic |
| CCCCAACAAAGTGGGAATTG+AGG | 0.572332 | 4_4:-47496633 | None:intergenic |
| TCGTAATCGCGGCGGAGGAG+AGG | 0.572350 | 4_4:-47499069 | None:intergenic |
| GTAGACATTGTGTTAGGAGA+TGG | 0.574233 | 4_4:+47498218 | Msa0684180:CDS |
| CAAGTTAAGAGGAGATGATG+AGG | 0.577424 | 4_4:+47496659 | Msa0684180:CDS |
| ACATATGTTAAGTTGAGTAG+AGG | 0.580510 | 4_4:+47496699 | Msa0684180:CDS |
| AATTCACAAAACAGAAGTGC+AGG | 0.580844 | 4_4:-47499195 | None:intergenic |
| GTGCCAGGTTTGGCAGCAGA+AGG | 0.581754 | 4_4:-47498284 | None:intergenic |
| AGTTAAGAGGAGATGATGAG+GGG | 0.582091 | 4_4:+47496661 | Msa0684180:CDS |
| AGAGGCGGTGCGGTACAGAT+CGG | 0.582576 | 4_4:-47499042 | None:intergenic |
| AACTCTACAACAGAGAGAGA+TGG | 0.584080 | 4_4:-47498977 | None:intergenic |
| AACTTGCAACCCCAACAAAG+TGG | 0.601285 | 4_4:-47496642 | None:intergenic |
| ACGGACTCTCCCATGTGAGG+GGG | 0.614552 | 4_4:+47498124 | Msa0684180:CDS |
| GAGAGGGCACAGAGGCGGTG+CGG | 0.627231 | 4_4:-47499052 | None:intergenic |
| CTAACTGTGAACATGAACTT+GGG | 0.631251 | 4_4:+47496609 | None:intergenic |
| ACTTGCAACCCCAACAAAGT+GGG | 0.639759 | 4_4:-47496641 | None:intergenic |
| CGGCGGAGGAGAGGGCACAG+AGG | 0.670281 | 4_4:-47499060 | None:intergenic |
| TGGAAGCTGATTCGTAATCG+CGG | 0.678906 | 4_4:-47499080 | None:intergenic |
| GTGCAGAGAAGTGAAAAGCA+CGG | 0.687256 | 4_4:-47499173 | None:intergenic |
| AAGCTGATTCGTAATCGCGG+CGG | 0.771908 | 4_4:-47499077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGATATAATTTTCTTA+TGG | - | chr4_4:47497606-47497625 | None:intergenic | 10.0% |
| !! | TAGAATAATATAGAATAATT+AGG | + | chr4_4:47498595-47498614 | Msa0684180:intron | 10.0% |
| !!! | TTATAAATTTTATTGACAGA+TGG | + | chr4_4:47497272-47497291 | Msa0684180:intron | 15.0% |
| !! | ACAATAAATGAATTATTGTT+AGG | + | chr4_4:47497833-47497852 | Msa0684180:intron | 15.0% |
| !! | ACATTGTAAACTTAAATTAG+AGG | + | chr4_4:47496815-47496834 | Msa0684180:intron | 20.0% |
| !! | AATTGTTATGTTAAGTATGA+GGG | - | chr4_4:47497006-47497025 | None:intergenic | 20.0% |
| !! | AAATTGTTATGTTAAGTATG+AGG | - | chr4_4:47497007-47497026 | None:intergenic | 20.0% |
| !! | TTGAATATTTCATATCTATC+TGG | - | chr4_4:47497348-47497367 | None:intergenic | 20.0% |
| !! | AGCAAATATTGAAATAAGTT+CGG | + | chr4_4:47497709-47497728 | Msa0684180:intron | 20.0% |
| !! | TAGTTAAAATATTAACGACT+TGG | + | chr4_4:47497900-47497919 | Msa0684180:intron | 20.0% |
| !! | AGTTTAGTATAAAGATACAT+CGG | - | chr4_4:47497975-47497994 | None:intergenic | 20.0% |
| !! | GGAAAAAAAAAATCTAACAT+GGG | - | chr4_4:47498087-47498106 | None:intergenic | 20.0% |
| !! | AGGAAAAAAAAAATCTAACA+TGG | - | chr4_4:47498088-47498107 | None:intergenic | 20.0% |
| !! | CAAAGTAAAACTCTTTAAAT+TGG | - | chr4_4:47498165-47498184 | None:intergenic | 20.0% |
| !! | CTATACAATAAGGAAATTAA+TGG | - | chr4_4:47498674-47498693 | None:intergenic | 20.0% |
| !! | TAATTTCCTTATTGTATAGT+AGG | + | chr4_4:47498675-47498694 | Msa0684180:intron | 20.0% |
| !! | GATATATATACAATGAGAAT+AGG | - | chr4_4:47498734-47498753 | None:intergenic | 20.0% |
| !!! | AATATGGTCCCTTTTTTTAA+AGG | - | chr4_4:47496975-47496994 | None:intergenic | 25.0% |
| ! | TTAAAAAAAGGGACCATATT+AGG | + | chr4_4:47496975-47496994 | Msa0684180:intron | 25.0% |
| ! | TAAAAAAAGGGACCATATTA+GGG | + | chr4_4:47496976-47496995 | Msa0684180:intron | 25.0% |
| ! | ATTGTTATGTTAAGTATGAG+GGG | - | chr4_4:47497005-47497024 | None:intergenic | 25.0% |
| ! | ATGAAAAAGCTTCCATTAAA+GGG | - | chr4_4:47497066-47497085 | None:intergenic | 25.0% |
| ! | GAGATTTAATGATTTGACAA+AGG | - | chr4_4:47497158-47497177 | None:intergenic | 25.0% |
| ! | ATAATATATTATGAACCTCG+TGG | - | chr4_4:47497411-47497430 | None:intergenic | 25.0% |
| !!! | TATTTTGGGATAAGAACAAT+AGG | + | chr4_4:47497515-47497534 | Msa0684180:intron | 25.0% |
| !!! | ATTTTGGGATAAGAACAATA+GGG | + | chr4_4:47497516-47497535 | Msa0684180:intron | 25.0% |
| !!! | AAGAACACTTTTGAAAGTAT+TGG | + | chr4_4:47497560-47497579 | Msa0684180:intron | 25.0% |
| !! | AAGTTCGGTGATTATAAAAT+TGG | + | chr4_4:47497724-47497743 | Msa0684180:intron | 25.0% |
| !! | AGTTCGGTGATTATAAAATT+GGG | + | chr4_4:47497725-47497744 | Msa0684180:intron | 25.0% |
| ! | TCTATAAGTCAGTAACAATT+TGG | + | chr4_4:47497877-47497896 | Msa0684180:intron | 25.0% |
| ! | TTGTTGCATATATACATGTT+CGG | + | chr4_4:47497937-47497956 | Msa0684180:intron | 25.0% |
| ! | GAAACAAGGATAATAAGTAA+TGG | - | chr4_4:47498014-47498033 | None:intergenic | 25.0% |
| !! | TACTTATTATCCTTGTTTCA+TGG | + | chr4_4:47498015-47498034 | Msa0684180:intron | 25.0% |
| !!! | TTTTTTTTCCTTCTCAGTAT+CGG | + | chr4_4:47498097-47498116 | Msa0684180:intron | 25.0% |
| ! | GTCAAAAAACTTAATCAAGA+TGG | + | chr4_4:47498317-47498336 | Msa0684180:CDS | 25.0% |
| ! | GTTTAATGACTAGTACTTTA+TGG | + | chr4_4:47498559-47498578 | Msa0684180:intron | 25.0% |
| ! | AATAAGGAAAGTAATGGTAA+TGG | - | chr4_4:47498631-47498650 | None:intergenic | 25.0% |
| ! | CTATACAATAAGGAAAGTAA+TGG | - | chr4_4:47498637-47498656 | None:intergenic | 25.0% |
| ! | TACTTTCCTTATTGTATAGT+AGG | + | chr4_4:47498638-47498657 | Msa0684180:intron | 25.0% |
| ! | CATATACCTACTATACAATA+AGG | - | chr4_4:47498684-47498703 | None:intergenic | 25.0% |
| ! | TATATACAATGAGAATAGGT+TGG | - | chr4_4:47498730-47498749 | None:intergenic | 25.0% |
| ! | TATATATCCCATTGATCAAA+TGG | + | chr4_4:47498746-47498765 | Msa0684180:intron | 25.0% |
| !! | ACATATGTTAAGTTGAGTAG+AGG | + | chr4_4:47496699-47496718 | Msa0684180:CDS | 30.0% |
| AGAGAAGTTGTAACTTAATG+TGG | + | chr4_4:47496747-47496766 | Msa0684180:intron | 30.0% | |
| GAGAAGTTGTAACTTAATGT+GGG | + | chr4_4:47496748-47496767 | Msa0684180:intron | 30.0% | |
| ! | ATTAGAGGCATAGTGAAATT+TGG | + | chr4_4:47496830-47496849 | Msa0684180:intron | 30.0% |
| ! | TTAGAGGCATAGTGAAATTT+GGG | + | chr4_4:47496831-47496850 | Msa0684180:intron | 30.0% |
| CTAAAAATGTTACCCCATAA+AGG | - | chr4_4:47496892-47496911 | None:intergenic | 30.0% | |
| !!! | TTTTTTTAAAGGTCCAACCA+TGG | - | chr4_4:47496964-47496983 | None:intergenic | 30.0% |
| ! | ATGGTTGGACCTTTAAAAAA+AGG | + | chr4_4:47496963-47496982 | Msa0684180:intron | 30.0% |
| ! | TGGTTGGACCTTTAAAAAAA+GGG | + | chr4_4:47496964-47496983 | Msa0684180:intron | 30.0% |
| AAAAAAAGGGACCATATTAG+GGG | + | chr4_4:47496977-47496996 | Msa0684180:intron | 30.0% | |
| !! | AATTGATGACTCACTTTTGA+GGG | - | chr4_4:47497032-47497051 | None:intergenic | 30.0% |
| AGTGAGTCATCAATTCATTA+TGG | + | chr4_4:47497037-47497056 | Msa0684180:intron | 30.0% | |
| GATGAAAAAGCTTCCATTAA+AGG | - | chr4_4:47497067-47497086 | None:intergenic | 30.0% | |
| ATGATTTGACAAAGGTTTGA+TGG | - | chr4_4:47497150-47497169 | None:intergenic | 30.0% | |
| !! | ACAAGTGTAGTTGATGAAAA+AGG | - | chr4_4:47497241-47497260 | None:intergenic | 30.0% |
| ATAATATGCTTCACGAAAAC+TGG | - | chr4_4:47497385-47497404 | None:intergenic | 30.0% | |
| AAGATACATCGGATAAAAGA+TGG | - | chr4_4:47497964-47497983 | None:intergenic | 30.0% | |
| ! | TTATTATCCTTGTTTCATGG+CGG | + | chr4_4:47498018-47498037 | Msa0684180:intron | 30.0% |
| ! | TTTTACTTTGACAGAACTTC+AGG | + | chr4_4:47498175-47498194 | Msa0684180:CDS | 30.0% |
| ! | GATTTTGGATCAGTCTTTAA+GGG | + | chr4_4:47498242-47498261 | Msa0684180:CDS | 30.0% |
| ATTGCGATATTGTCAAATAG+CGG | + | chr4_4:47498406-47498425 | Msa0684180:intron | 30.0% | |
| CATCTACCTACTATACAATA+AGG | - | chr4_4:47498647-47498666 | None:intergenic | 30.0% | |
| ! | GTGTTTTCCATTTGATCAAT+GGG | - | chr4_4:47498756-47498775 | None:intergenic | 30.0% |
| ! | TGTGTTTTCCATTTGATCAA+TGG | - | chr4_4:47498757-47498776 | None:intergenic | 30.0% |
| TACAACATTCATCTCTTTCA+TGG | + | chr4_4:47498797-47498816 | Msa0684180:intron | 30.0% | |
| AAGTTAAGAGGAGATGATGA+GGG | + | chr4_4:47496660-47496679 | Msa0684180:CDS | 35.0% | |
| AAGTTGAGTAGAGGTTTCTA+TGG | + | chr4_4:47496708-47496727 | Msa0684180:intron | 35.0% | |
| AGTTGAGTAGAGGTTTCTAT+GGG | + | chr4_4:47496709-47496728 | Msa0684180:intron | 35.0% | |
| CAGAGTGAATTTGAAAGAGA+TGG | - | chr4_4:47496861-47496880 | None:intergenic | 35.0% | |
| !!! | ATGGGGTAACATTTTTAGTC+TGG | + | chr4_4:47496894-47496913 | Msa0684180:intron | 35.0% |
| ! | TTTTAGTCTGGAAGTAGCTA+TGG | + | chr4_4:47496906-47496925 | Msa0684180:intron | 35.0% |
| TTTAGTCTGGAAGTAGCTAT+GGG | + | chr4_4:47496907-47496926 | Msa0684180:intron | 35.0% | |
| ATAAAATGACCGGTTATAGC+AGG | - | chr4_4:47496936-47496955 | None:intergenic | 35.0% | |
| !! | CTATAACCGGTCATTTTATG+AGG | + | chr4_4:47496937-47496956 | Msa0684180:intron | 35.0% |
| !! | ATTGATGACTCACTTTTGAG+GGG | - | chr4_4:47497031-47497050 | None:intergenic | 35.0% |
| !! | GAATTGATGACTCACTTTTG+AGG | - | chr4_4:47497033-47497052 | None:intergenic | 35.0% |
| TCATTATGGTCACCCTTTAA+TGG | + | chr4_4:47497051-47497070 | Msa0684180:intron | 35.0% | |
| ! | TGATTGATGACTCACTTGAA+TGG | - | chr4_4:47497200-47497219 | None:intergenic | 35.0% |
| GAAGCATATTATATACCACG+AGG | + | chr4_4:47497393-47497412 | Msa0684180:intron | 35.0% | |
| ATGGTTGTACAAATATCACG+AGG | + | chr4_4:47497629-47497648 | Msa0684180:intron | 35.0% | |
| TCGGTGATTATAAAATTGGG+AGG | + | chr4_4:47497728-47497747 | Msa0684180:intron | 35.0% | |
| TTATAAAATTGGGAGGCCAA+TGG | + | chr4_4:47497735-47497754 | Msa0684180:intron | 35.0% | |
| GAACCATTGTTCTTATCCAT+TGG | - | chr4_4:47497754-47497773 | None:intergenic | 35.0% | |
| TGTAATTTGAACCGTTCAAG+TGG | - | chr4_4:47497814-47497833 | None:intergenic | 35.0% | |
| TTCATAGATCTTGCACTTGA+GGG | + | chr4_4:47498044-47498063 | Msa0684180:intron | 35.0% | |
| TTTCGTGTAGACATTGTGTT+AGG | + | chr4_4:47498212-47498231 | Msa0684180:CDS | 35.0% | |
| ! | CGATTTTGGATCAGTCTTTA+AGG | + | chr4_4:47498241-47498260 | Msa0684180:CDS | 35.0% |
| ATATGTCTGCCATGATATAG+AGG | + | chr4_4:47498699-47498718 | Msa0684180:intron | 35.0% | |
| TTGGTCAAACCTCTATATCA+TGG | - | chr4_4:47498711-47498730 | None:intergenic | 35.0% | |
| ! | AATTCACAAAACAGAAGTGC+AGG | - | chr4_4:47499198-47499217 | None:intergenic | 35.0% |
| AAATCTCAAACACCAACAAC+AGG | - | chr4_4:47499245-47499264 | None:intergenic | 35.0% | |
| TCCTCAATTCCCACTTTGTT+GGG | + | chr4_4:47496632-47496651 | Msa0684180:CDS | 40.0% | |
| CAAGTTAAGAGGAGATGATG+AGG | + | chr4_4:47496659-47496678 | Msa0684180:CDS | 40.0% | |
| AGTTAAGAGGAGATGATGAG+GGG | + | chr4_4:47496661-47496680 | Msa0684180:CDS | 40.0% | |
| TATGGGAAACCTGCTATAAC+CGG | + | chr4_4:47496924-47496943 | Msa0684180:intron | 40.0% | |
| CATGGACCTCATAAAATGAC+CGG | - | chr4_4:47496946-47496965 | None:intergenic | 40.0% | |
| ! | CATTTTATGAGGTCCATGGT+TGG | + | chr4_4:47496948-47496967 | Msa0684180:intron | 40.0% |
| ATGAAAAAGGCTTCTGCTAG+AGG | - | chr4_4:47497228-47497247 | None:intergenic | 40.0% | |
| AGGCCAATGGATAAGAACAA+TGG | + | chr4_4:47497748-47497767 | Msa0684180:intron | 40.0% | |
| CTCAACTTGCAGACAAGTAA+TGG | + | chr4_4:47497781-47497800 | Msa0684180:intron | 40.0% | |
| ATGGAAGCTTACCACTTGAA+CGG | + | chr4_4:47497800-47497819 | Msa0684180:intron | 40.0% | |
| CTTCATAGATCTTGCACTTG+AGG | + | chr4_4:47498043-47498062 | Msa0684180:intron | 40.0% | |
| TAACATGGGTGAGTGTACTT+TGG | - | chr4_4:47498073-47498092 | None:intergenic | 40.0% | |
| GTAGACATTGTGTTAGGAGA+TGG | + | chr4_4:47498218-47498237 | Msa0684180:CDS | 40.0% | |
| AAGGTGAGTGTTCATCAATC+CGG | - | chr4_4:47498268-47498287 | None:intergenic | 40.0% | |
| ! | CAAAAGTCACAACGAGTTGA+TGG | + | chr4_4:47498343-47498362 | Msa0684180:CDS | 40.0% |
| TTGTCAAATAGCGGCTATAG+TGG | + | chr4_4:47498415-47498434 | Msa0684180:intron | 40.0% | |
| !!! | TGGTTTGGTCAAGTTTTGCT+AGG | - | chr4_4:47498503-47498522 | None:intergenic | 40.0% |
| ! | GACCAAACCACTATTTTCTG+CGG | + | chr4_4:47498513-47498532 | Msa0684180:intron | 40.0% |
| AACCGCAGAAAATAGTGGTT+TGG | - | chr4_4:47498518-47498537 | None:intergenic | 40.0% | |
| TTGTGAACCGCAGAAAATAG+TGG | - | chr4_4:47498523-47498542 | None:intergenic | 40.0% | |
| !! | TTACAACAGGTGTTGTTCGT+CGG | - | chr4_4:47498950-47498969 | None:intergenic | 40.0% |
| !! | AGATGGATTGCGTTTACAAC+AGG | - | chr4_4:47498963-47498982 | None:intergenic | 40.0% |
| AACTCTACAACAGAGAGAGA+TGG | - | chr4_4:47498980-47498999 | None:intergenic | 40.0% | |
| TCAGCTTCCAAACGTGATTT+CGG | + | chr4_4:47499093-47499112 | Msa0684180:CDS | 40.0% | |
| AGTAACACCGAAATCACGTT+TGG | - | chr4_4:47499103-47499122 | None:intergenic | 40.0% | |
| !!! | GCAGTGTTGTTGTTTTTCGT+CGG | - | chr4_4:47499152-47499171 | None:intergenic | 40.0% |
| ACTTTGTTCGTACCTGTTGT+TGG | + | chr4_4:47499230-47499249 | Msa0684180:CDS | 40.0% | |
| ACAGAAAATACGGCGAAGTA+TGG | - | chr4_4:47499278-47499297 | None:intergenic | 40.0% | |
| GTCCTCAATTCCCACTTTGT+TGG | + | chr4_4:47496631-47496650 | Msa0684180:CDS | 45.0% | |
| CCTCAATTCCCACTTTGTTG+GGG | + | chr4_4:47496633-47496652 | Msa0684180:CDS | 45.0% | |
| ACTTGCAACCCCAACAAAGT+GGG | - | chr4_4:47496644-47496663 | None:intergenic | 45.0% | |
| AACTTGCAACCCCAACAAAG+TGG | - | chr4_4:47496645-47496664 | None:intergenic | 45.0% | |
| TGTTGGGGTTGCAAGTTAAG+AGG | + | chr4_4:47496648-47496667 | Msa0684180:CDS | 45.0% | |
| GTTAAGAGGAGATGATGAGG+GGG | + | chr4_4:47496662-47496681 | Msa0684180:CDS | 45.0% | |
| GAGTAGAGGTTTCTATGGGT+CGG | + | chr4_4:47496713-47496732 | Msa0684180:intron | 45.0% | |
| ACTCTGTACACGCACCTTTA+TGG | + | chr4_4:47496875-47496894 | Msa0684180:intron | 45.0% | |
| CTCTGTACACGCACCTTTAT+GGG | + | chr4_4:47496876-47496895 | Msa0684180:intron | 45.0% | |
| TCTGTACACGCACCTTTATG+GGG | + | chr4_4:47496877-47496896 | Msa0684180:intron | 45.0% | |
| !! | CGGTCATTTTATGAGGTCCA+TGG | + | chr4_4:47496944-47496963 | Msa0684180:intron | 45.0% |
| !! | TATGAGGGGTACCCCTAATA+TGG | - | chr4_4:47496991-47497010 | None:intergenic | 45.0% |
| CAGACCTATTGATGTGGTGA+GGG | - | chr4_4:47497123-47497142 | None:intergenic | 45.0% | |
| ACAGACCTATTGATGTGGTG+AGG | - | chr4_4:47497124-47497143 | None:intergenic | 45.0% | |
| GGTAGACAGACCTATTGATG+TGG | - | chr4_4:47497129-47497148 | None:intergenic | 45.0% | |
| TGTTAGGAAAATGCGTCCCT+CGG | + | chr4_4:47497849-47497868 | Msa0684180:intron | 45.0% | |
| ! | TGACTTATAGAGTGCTCCGA+GGG | - | chr4_4:47497868-47497887 | None:intergenic | 45.0% |
| ! | GTGTTAGGAGATGGCGATTT+TGG | + | chr4_4:47498227-47498246 | Msa0684180:CDS | 45.0% |
| ! | TTGGATCAGTCTTTAAGGGC+CGG | + | chr4_4:47498246-47498265 | Msa0684180:CDS | 45.0% |
| AGAAACACATGTGCCAGGTT+TGG | - | chr4_4:47498297-47498316 | None:intergenic | 45.0% | |
| TTGACAGAAACACATGTGCC+AGG | - | chr4_4:47498302-47498321 | None:intergenic | 45.0% | |
| ATTAAGGAACAACAGGCGTG+TGG | - | chr4_4:47498890-47498909 | None:intergenic | 45.0% | |
| TCTGCAGGTGATGAAGAATC+TGG | - | chr4_4:47499020-47499039 | None:intergenic | 45.0% | |
| !! | TGGAAGCTGATTCGTAATCG+CGG | - | chr4_4:47499083-47499102 | None:intergenic | 45.0% |
| !! | TTGTTTTTCGTCGGAAGCGT+CGG | - | chr4_4:47499143-47499162 | None:intergenic | 45.0% |
| GTGCAGAGAAGTGAAAAGCA+CGG | - | chr4_4:47499176-47499195 | None:intergenic | 45.0% | |
| CGGCGAAGTATGGTTACAAA+CGG | - | chr4_4:47499268-47499287 | None:intergenic | 45.0% | |
| !!! | ATAATTTTTTTCTATTATTT+TGG | + | chr4_4:47497500-47497519 | Msa0684180:intron | 5.0% |
| !!! | TAATTTTTTTCTATTATTTT+GGG | + | chr4_4:47497501-47497520 | Msa0684180:intron | 5.0% |
| !!! | AAAATTATATCTAAAATTAA+TGG | + | chr4_4:47497610-47497629 | Msa0684180:intron | 5.0% |
| !!! | TTTTTTTTTTTTTAATGAAA+GGG | - | chr4_4:47498843-47498862 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTAATGAA+AGG | - | chr4_4:47498844-47498863 | None:intergenic | 5.0% |
| CCCCAACAAAGTGGGAATTG+AGG | - | chr4_4:47496636-47496655 | None:intergenic | 50.0% | |
| ATTGATGTGGTGAGGGTCGA+CGG | - | chr4_4:47497116-47497135 | None:intergenic | 50.0% | |
| TCGACCCTCACCACATCAAT+AGG | + | chr4_4:47497116-47497135 | Msa0684180:intron | 50.0% | |
| ! | CTGACTTATAGAGTGCTCCG+AGG | - | chr4_4:47497869-47497888 | None:intergenic | 50.0% |
| !! | TGAAGCACCGCCATGAAACA+AGG | - | chr4_4:47498028-47498047 | None:intergenic | 50.0% |
| CATGGGTGAGTGTACTTTGG+TGG | - | chr4_4:47498070-47498089 | None:intergenic | 50.0% | |
| !! | AAGCTGATTCGTAATCGCGG+CGG | - | chr4_4:47499080-47499099 | None:intergenic | 50.0% |
| ! | GATGATGAGGGGGAGAGTGT+TGG | + | chr4_4:47496672-47496691 | Msa0684180:CDS | 55.0% |
| !! | CCTTCTCAGTATCGGTGCCA+CGG | + | chr4_4:47498105-47498124 | Msa0684180:intron | 55.0% |
| GCAAGATCTCCCCCTCACAT+GGG | - | chr4_4:47498136-47498155 | None:intergenic | 55.0% | |
| TGCAAGATCTCCCCCTCACA+TGG | - | chr4_4:47498137-47498156 | None:intergenic | 55.0% | |
| TCACCTTCTGCTGCCAAACC+TGG | + | chr4_4:47498281-47498300 | Msa0684180:CDS | 55.0% | |
| !! | GCGGCGGATTAAGGAACAAC+AGG | - | chr4_4:47498897-47498916 | None:intergenic | 55.0% |
| GCGTGATGAAGGAGGAGGTA+CGG | - | chr4_4:47498922-47498941 | None:intergenic | 55.0% | |
| !! | CAACAGGTGTTGTTCGTCGG+CGG | - | chr4_4:47498947-47498966 | None:intergenic | 55.0% |
| CGGTACAGATCGGAATCTGC+AGG | - | chr4_4:47499035-47499054 | None:intergenic | 55.0% | |
| !! | CCGTGGCACCGATACTGAGA+AGG | - | chr4_4:47498108-47498127 | None:intergenic | 60.0% |
| CCACGGACTCTCCCATGTGA+GGG | + | chr4_4:47498122-47498141 | Msa0684180:CDS | 60.0% | |
| CACGGACTCTCCCATGTGAG+GGG | + | chr4_4:47498123-47498142 | Msa0684180:CDS | 60.0% | |
| ACGGACTCTCCCATGTGAGG+GGG | + | chr4_4:47498124-47498143 | Msa0684180:CDS | 60.0% | |
| GTGCCAGGTTTGGCAGCAGA+AGG | - | chr4_4:47498287-47498306 | None:intergenic | 60.0% | |
| ! | TGAAGGAGGAGGTACGGCAG+CGG | - | chr4_4:47498916-47498935 | None:intergenic | 60.0% |
| AGAGGCGGTGCGGTACAGAT+CGG | - | chr4_4:47499045-47499064 | None:intergenic | 60.0% | |
| ! | CTGATTCGTAATCGCGGCGG+AGG | - | chr4_4:47499077-47499096 | None:intergenic | 60.0% |
| !! | GAAGCGTCGGAACAGAGCAC+TGG | - | chr4_4:47499130-47499149 | None:intergenic | 60.0% |
| GATGTGGTGAGGGTCGACGG+TGG | - | chr4_4:47497113-47497132 | None:intergenic | 65.0% | |
| GCCACGGACTCTCCCATGTG+AGG | + | chr4_4:47498121-47498140 | Msa0684180:CDS | 65.0% | |
| CCCTCACATGGGAGAGTCCG+TGG | - | chr4_4:47498125-47498144 | None:intergenic | 65.0% | |
| !! | GGTACGGCAGCGGCGGATTA+AGG | - | chr4_4:47498906-47498925 | None:intergenic | 65.0% |
| CGGCTGCGTGATGAAGGAGG+AGG | - | chr4_4:47498927-47498946 | None:intergenic | 65.0% | |
| CGTAATCGCGGCGGAGGAGA+GGG | - | chr4_4:47499071-47499090 | None:intergenic | 65.0% | |
| TCGTAATCGCGGCGGAGGAG+AGG | - | chr4_4:47499072-47499091 | None:intergenic | 65.0% | |
| ! | AGGAGGAGGTACGGCAGCGG+CGG | - | chr4_4:47498913-47498932 | None:intergenic | 70.0% |
| CGGCGGCTGCGTGATGAAGG+AGG | - | chr4_4:47498930-47498949 | None:intergenic | 70.0% | |
| CGTCGGCGGCTGCGTGATGA+AGG | - | chr4_4:47498933-47498952 | None:intergenic | 70.0% | |
| ! | GAGAGGGCACAGAGGCGGTG+CGG | - | chr4_4:47499055-47499074 | None:intergenic | 70.0% |
| ! | CGGAGGAGAGGGCACAGAGG+CGG | - | chr4_4:47499060-47499079 | None:intergenic | 70.0% |
| ! | CGGCGGAGGAGAGGGCACAG+AGG | - | chr4_4:47499063-47499082 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47496621 | 47499303 | 47496621 | ID=Msa0684180;Name=Msa0684180 |
| chr4_4 | mRNA | 47496621 | 47499303 | 47496621 | ID=Msa0684180-mRNA-1;Parent=Msa0684180;Name=Msa0684180-mRNA-1;_AED=0.81;_eAED=0.81;_QI=0|0|0|0.33|1|1|3|0|236 |
| chr4_4 | exon | 47496621 | 47496720 | 47496621 | ID=Msa0684180-mRNA-1:exon:11731;Parent=Msa0684180-mRNA-1 |
| chr4_4 | exon | 47498114 | 47498364 | 47498114 | ID=Msa0684180-mRNA-1:exon:11732;Parent=Msa0684180-mRNA-1 |
| chr4_4 | exon | 47498944 | 47499303 | 47498944 | ID=Msa0684180-mRNA-1:exon:11733;Parent=Msa0684180-mRNA-1 |
| chr4_4 | CDS | 47496621 | 47496720 | 47496621 | ID=Msa0684180-mRNA-1:cds;Parent=Msa0684180-mRNA-1 |
| chr4_4 | CDS | 47498114 | 47498364 | 47498114 | ID=Msa0684180-mRNA-1:cds;Parent=Msa0684180-mRNA-1 |
| chr4_4 | CDS | 47498944 | 47499303 | 47498944 | ID=Msa0684180-mRNA-1:cds;Parent=Msa0684180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
