Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601540 | XP_013455842.1 | 88.706 | 425 | 17 | 2 | 12 | 405 | 67 | 491 | 0.0 | 762 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601540 | sp|Q9XGY7|FAR_SIMCH | 56.941 | 425 | 151 | 3 | 12 | 404 | 68 | 492 | 2.93e-173 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036140 | Msa0601540 | 0.827357 | 1.635807e-54 | -8.615850e-47 |
| Msa0051020 | Msa0601540 | 0.815533 | 8.804987e-52 | -8.615850e-47 |
| Msa0078640 | Msa0601540 | 0.804500 | 2.096740e-49 | -8.615850e-47 |
| Msa0079070 | Msa0601540 | 0.812709 | 3.699683e-51 | -8.615850e-47 |
| Msa0084080 | Msa0601540 | 0.812599 | 3.909041e-51 | -8.615850e-47 |
| Msa0101270 | Msa0601540 | 0.814264 | 1.683492e-51 | -8.615850e-47 |
| Msa0106710 | Msa0601540 | 0.801239 | 9.890379e-49 | -8.615850e-47 |
| Msa0108410 | Msa0601540 | 0.846827 | 1.701085e-59 | -8.615850e-47 |
| Msa0140500 | Msa0601540 | -0.833154 | 6.278031e-56 | -8.615850e-47 |
| Msa0183760 | Msa0601540 | 0.818741 | 1.672993e-52 | -8.615850e-47 |
| Msa0187030 | Msa0601540 | 0.820830 | 5.574185e-53 | -8.615850e-47 |
| Msa0189040 | Msa0601540 | 0.817783 | 2.756476e-52 | -8.615850e-47 |
| Msa0207350 | Msa0601540 | 0.800081 | 1.703794e-48 | -8.615850e-47 |
| Msa0211150 | Msa0601540 | 0.813951 | 1.973281e-51 | -8.615850e-47 |
| Msa0212990 | Msa0601540 | 0.819487 | 1.131816e-52 | -8.615850e-47 |
| Msa0221470 | Msa0601540 | 0.820953 | 5.221854e-53 | -8.615850e-47 |
| Msa0225220 | Msa0601540 | 0.815410 | 9.379091e-52 | -8.615850e-47 |
| Msa0227340 | Msa0601540 | 0.806104 | 9.672839e-50 | -8.615850e-47 |
| Msa0232020 | Msa0601540 | 0.814445 | 1.534816e-51 | -8.615850e-47 |
| Msa0365100 | Msa0601540 | 0.802123 | 6.513251e-49 | -8.615850e-47 |
| Msa0367870 | Msa0601540 | 0.822215 | 2.668794e-53 | -8.615850e-47 |
| Msa0381610 | Msa0601540 | -0.817689 | 2.894468e-52 | -8.615850e-47 |
| Msa0403640 | Msa0601540 | 0.841500 | 4.575091e-58 | -8.615850e-47 |
| Msa0427100 | Msa0601540 | 0.806311 | 8.747670e-50 | -8.615850e-47 |
| Msa0427120 | Msa0601540 | 0.802557 | 5.302884e-49 | -8.615850e-47 |
| Msa0432160 | Msa0601540 | 0.806067 | 9.847096e-50 | -8.615850e-47 |
| Msa0432670 | Msa0601540 | 0.807832 | 4.168943e-50 | -8.615850e-47 |
| Msa0452710 | Msa0601540 | 0.823853 | 1.107532e-53 | -8.615850e-47 |
| Msa0460590 | Msa0601540 | 0.832843 | 7.502393e-56 | -8.615850e-47 |
| Msa0476680 | Msa0601540 | 0.816901 | 4.353439e-52 | -8.615850e-47 |
| Msa0240900 | Msa0601540 | 0.821262 | 4.432932e-53 | -8.615850e-47 |
| Msa0241140 | Msa0601540 | 0.834849 | 2.363049e-56 | -8.615850e-47 |
| Msa0259210 | Msa0601540 | 0.804197 | 2.425081e-49 | -8.615850e-47 |
| Msa0259220 | Msa0601540 | 0.819126 | 1.367656e-52 | -8.615850e-47 |
| Msa0264830 | Msa0601540 | 0.809846 | 1.546386e-50 | -8.615850e-47 |
| Msa0267370 | Msa0601540 | 0.824921 | 6.209211e-54 | -8.615850e-47 |
| Msa0292120 | Msa0601540 | 0.812357 | 4.416796e-51 | -8.615850e-47 |
| Msa0302870 | Msa0601540 | 0.808224 | 3.440930e-50 | -8.615850e-47 |
| Msa0308460 | Msa0601540 | 0.820576 | 6.376465e-53 | -8.615850e-47 |
| Msa0308630 | Msa0601540 | 0.810190 | 1.303985e-50 | -8.615850e-47 |
| Msa0311610 | Msa0601540 | 0.820729 | 5.879611e-53 | -8.615850e-47 |
| Msa0315690 | Msa0601540 | 0.807497 | 4.912146e-50 | -8.615850e-47 |
| Msa0317970 | Msa0601540 | 0.836791 | 7.605572e-57 | -8.615850e-47 |
| Msa0330340 | Msa0601540 | 0.810749 | 9.872737e-51 | -8.615850e-47 |
| Msa0336310 | Msa0601540 | 0.812477 | 4.157925e-51 | -8.615850e-47 |
| Msa0336320 | Msa0601540 | 0.806422 | 8.288244e-50 | -8.615850e-47 |
| Msa0340340 | Msa0601540 | 0.817257 | 3.621462e-52 | -8.615850e-47 |
| Msa0342010 | Msa0601540 | 0.823483 | 1.351830e-53 | -8.615850e-47 |
| Msa0358890 | Msa0601540 | 0.825520 | 4.481728e-54 | -8.615850e-47 |
| Msa0485240 | Msa0601540 | 0.819018 | 1.447290e-52 | -8.615850e-47 |
| Msa0518380 | Msa0601540 | 0.806395 | 8.399699e-50 | -8.615850e-47 |
| Msa0521010 | Msa0601540 | 0.816299 | 5.939886e-52 | -8.615850e-47 |
| Msa0526070 | Msa0601540 | -0.802098 | 6.591862e-49 | -8.615850e-47 |
| Msa0532960 | Msa0601540 | 0.810972 | 8.836468e-51 | -8.615850e-47 |
| Msa0532980 | Msa0601540 | 0.813862 | 2.064448e-51 | -8.615850e-47 |
| Msa0545850 | Msa0601540 | 0.890444 | 9.800563e-74 | -8.615850e-47 |
| Msa0559500 | Msa0601540 | 0.830000 | 3.756144e-55 | -8.615850e-47 |
| Msa0574390 | Msa0601540 | 0.806359 | 8.546008e-50 | -8.615850e-47 |
| Msa0579660 | Msa0601540 | 0.821201 | 4.579730e-53 | -8.615850e-47 |
| Msa0580520 | Msa0601540 | 0.811467 | 6.901045e-51 | -8.615850e-47 |
| Msa0583360 | Msa0601540 | -0.807312 | 5.374553e-50 | -8.615850e-47 |
| Msa0585560 | Msa0601540 | 0.803138 | 4.021281e-49 | -8.615850e-47 |
| Msa0598160 | Msa0601540 | 0.814898 | 1.218672e-51 | -8.615850e-47 |
| Msa0601540 | Msa0613710 | 0.816049 | 6.756431e-52 | -8.615850e-47 |
| Msa0601540 | Msa0622170 | -0.800746 | 1.247265e-48 | -8.615850e-47 |
| Msa0601540 | Msa0636020 | 0.830648 | 2.608933e-55 | -8.615850e-47 |
| Msa0601540 | Msa0637900 | 0.816439 | 5.527208e-52 | -8.615850e-47 |
| Msa0601540 | Msa0638350 | 0.826742 | 2.295342e-54 | -8.615850e-47 |
| Msa0601540 | Msa0642730 | 0.804765 | 1.846358e-49 | -8.615850e-47 |
| Msa0601540 | Msa0663390 | 0.801022 | 1.095592e-48 | -8.615850e-47 |
| Msa0601540 | Msa0667770 | 0.801691 | 7.989627e-49 | -8.615850e-47 |
| Msa0601540 | Msa0680660 | 0.861904 | 7.388557e-64 | -8.615850e-47 |
| Msa0601540 | Msa0707250 | 0.811416 | 7.078606e-51 | -8.615850e-47 |
| Msa0601540 | Msa0733010 | 0.814606 | 1.414603e-51 | -8.615850e-47 |
| Msa0601540 | Msa0736600 | 0.802399 | 5.716012e-49 | -8.615850e-47 |
| Msa0601540 | Msa0743930 | 0.803678 | 3.108329e-49 | -8.615850e-47 |
| Msa0601540 | Msa0751850 | 0.803138 | 4.021281e-49 | -8.615850e-47 |
| Msa0601540 | Msa0762970 | 0.801932 | 7.130680e-49 | -8.615850e-47 |
| Msa0601540 | Msa0767300 | 0.802466 | 5.535430e-49 | -8.615850e-47 |
| Msa0601540 | Msa0784480 | 0.832568 | 8.776913e-56 | -8.615850e-47 |
| Msa0601540 | Msa0795070 | 0.818520 | 1.877813e-52 | -8.615850e-47 |
| Msa0601540 | Msa0797250 | 0.801041 | 1.085808e-48 | -8.615850e-47 |
| Msa0601540 | Msa0817460 | 0.818170 | 2.253949e-52 | -8.615850e-47 |
| Msa0601540 | Msa0818060 | 0.816614 | 5.049982e-52 | -8.615850e-47 |
| Msa0601540 | Msa0822500 | 0.816331 | 5.843501e-52 | -8.615850e-47 |
| Msa0601540 | Msa0828240 | 0.805556 | 1.260743e-49 | -8.615850e-47 |
| Msa0601540 | Msa0831850 | 0.809622 | 1.727418e-50 | -8.615850e-47 |
| Msa0601540 | Msa0833520 | 0.827419 | 1.581281e-54 | -8.615850e-47 |
| Msa0601540 | Msa0835800 | 0.826054 | 3.348920e-54 | -8.615850e-47 |
| Msa0601540 | Msa0844110 | 0.804896 | 1.733704e-49 | -8.615850e-47 |
| Msa0601540 | Msa0875290 | 0.810170 | 1.317062e-50 | -8.615850e-47 |
| Msa0601540 | Msa0902510 | 0.803884 | 2.816521e-49 | -8.615850e-47 |
| Msa0601540 | Msa0902830 | 0.811165 | 8.025224e-51 | -8.615850e-47 |
| Msa0601540 | Msa0936390 | 0.800928 | 1.145147e-48 | -8.615850e-47 |
| Msa0601540 | Msa0940580 | 0.809924 | 1.487848e-50 | -8.615850e-47 |
| Msa0601540 | Msa0967870 | 0.802640 | 5.097010e-49 | -8.615850e-47 |
| Msa0601540 | Msa0980200 | 0.803892 | 2.806485e-49 | -8.615850e-47 |
| Msa0601540 | Msa0986510 | 0.802857 | 4.597243e-49 | -8.615850e-47 |
| Msa0601540 | Msa0997370 | 0.813090 | 3.052581e-51 | -8.615850e-47 |
| Msa0601540 | Msa1001390 | 0.820722 | 5.902584e-53 | -8.615850e-47 |
| Msa0601540 | Msa1002850 | 0.812906 | 3.348632e-51 | -8.615850e-47 |
| Msa0601540 | Msa1018990 | -0.828148 | 1.056363e-54 | -8.615850e-47 |
| Msa0601540 | Msa1022820 | 0.813583 | 2.378473e-51 | -8.615850e-47 |
| Msa0601540 | Msa1026940 | 0.810489 | 1.123916e-50 | -8.615850e-47 |
| Msa0601540 | Msa1028590 | 0.810030 | 1.411605e-50 | -8.615850e-47 |
| Msa0601540 | Msa1032770 | 0.816336 | 5.829825e-52 | -8.615850e-47 |
| Msa0601540 | Msa1034500 | 0.845434 | 4.071365e-59 | -8.615850e-47 |
| Msa0601540 | Msa1036610 | 0.811411 | 7.095101e-51 | -8.615850e-47 |
| Msa0601540 | Msa1036710 | -0.814504 | 1.489802e-51 | -8.615850e-47 |
| Msa0601540 | Msa1038080 | 0.801057 | 1.077399e-48 | -8.615850e-47 |
| Msa0601540 | Msa1039710 | -0.807085 | 6.005053e-50 | -8.615850e-47 |
| Msa0601540 | Msa1076960 | 0.807207 | 5.657606e-50 | -8.615850e-47 |
| Msa0601540 | Msa1089450 | 0.824794 | 6.652873e-54 | -8.615850e-47 |
| Msa0601540 | Msa1093260 | 0.800226 | 1.591664e-48 | -8.615850e-47 |
| Msa0601540 | Msa1101090 | 0.806025 | 1.004916e-49 | -8.615850e-47 |
| Msa0601540 | Msa1104560 | 0.831677 | 1.457442e-55 | -8.615850e-47 |
| Msa0601540 | Msa1108070 | 0.820683 | 6.025394e-53 | -8.615850e-47 |
| Msa0601540 | Msa1121490 | 0.821725 | 3.465337e-53 | -8.615850e-47 |
| Msa0601540 | Msa1142670 | 0.815830 | 7.561386e-52 | -8.615850e-47 |
| Msa0601540 | Msa1144450 | 0.816032 | 6.816168e-52 | -8.615850e-47 |
| Msa0601540 | Msa1145810 | 0.815008 | 1.151769e-51 | -8.615850e-47 |
| Msa0601540 | Msa1155170 | -0.806258 | 8.978052e-50 | -8.615850e-47 |
| Msa0601540 | Msa1162780 | 0.834042 | 3.767614e-56 | -8.615850e-47 |
| Msa0601540 | Msa1185110 | 0.810324 | 1.219900e-50 | -8.615850e-47 |
| Msa0601540 | Msa1204630 | 0.814663 | 1.373965e-51 | -8.615850e-47 |
| Msa0601540 | Msa1225860 | -0.806483 | 8.049631e-50 | -8.615850e-47 |
| Msa0601540 | Msa1243870 | 0.825819 | 3.807415e-54 | -8.615850e-47 |
| Msa0601540 | Msa1246360 | 0.803846 | 2.868470e-49 | -8.615850e-47 |
| Msa0601540 | Msa1277690 | 0.802058 | 6.715950e-49 | -8.615850e-47 |
| Msa0601540 | Msa1284900 | 0.814383 | 1.584416e-51 | -8.615850e-47 |
| Msa0601540 | Msa1285550 | 0.801185 | 1.014387e-48 | -8.615850e-47 |
| Msa0601540 | Msa1286610 | 0.806997 | 6.266370e-50 | -8.615850e-47 |
| Msa0601540 | Msa1287460 | 0.807621 | 4.621540e-50 | -8.615850e-47 |
| Msa0601540 | Msa1305810 | 0.827465 | 1.541117e-54 | -8.615850e-47 |
| Msa0601540 | Msa1308870 | 0.820674 | 6.054906e-53 | -8.615850e-47 |
| Msa0601540 | Msa1330180 | 0.800591 | 1.341373e-48 | -8.615850e-47 |
| Msa0601540 | Msa1345810 | 0.831062 | 2.065067e-55 | -8.615850e-47 |
| Msa0601540 | Msa1355450 | 0.806635 | 7.473332e-50 | -8.615850e-47 |
| Msa0601540 | Msa1368430 | 0.802182 | 6.335105e-49 | -8.615850e-47 |
| Msa0601540 | Msa1377570 | 0.804938 | 1.699069e-49 | -8.615850e-47 |
| Msa0601540 | Msa1382790 | 0.802587 | 5.227173e-49 | -8.615850e-47 |
| Msa0601540 | Msa1385890 | 0.802096 | 6.597117e-49 | -8.615850e-47 |
| Msa0601540 | Msa1390680 | 0.801885 | 7.290073e-49 | -8.615850e-47 |
| Msa0601540 | Msa1390690 | 0.817126 | 3.875407e-52 | -8.615850e-47 |
| Msa0601540 | Msa1390700 | 0.810692 | 1.015867e-50 | -8.615850e-47 |
| Msa0601540 | Msa1392890 | 0.802246 | 6.144615e-49 | -8.615850e-47 |
| Msa0601540 | Msa1392900 | 0.814456 | 1.526180e-51 | -8.615850e-47 |
| Msa0601540 | Msa1392910 | 0.806530 | 7.866695e-50 | -8.615850e-47 |
| Msa0601540 | Msa1393570 | 0.811226 | 7.784492e-51 | -8.615850e-47 |
| Msa0601540 | Msa1394380 | 0.814599 | 1.418985e-51 | -8.615850e-47 |
| Msa0601540 | Msa1418240 | 0.817106 | 3.916366e-52 | -8.615850e-47 |
| Msa0601540 | Msa1423780 | 0.809998 | 1.434180e-50 | -8.615850e-47 |
| Msa0601540 | Msa1425880 | 0.802634 | 5.111759e-49 | -8.615850e-47 |
| Msa0601540 | Msa1432130 | 0.802738 | 4.864873e-49 | -8.615850e-47 |
| Msa0601540 | Msa1440310 | 0.806377 | 8.472542e-50 | -8.615850e-47 |
| Msa0601540 | Msa1440740 | 0.800263 | 1.564420e-48 | -8.615850e-47 |
| Msa0601540 | Msa1444510 | 0.807598 | 4.675452e-50 | -8.615850e-47 |
| Msa0601540 | Msa1445390 | -0.832473 | 9.267998e-56 | -8.615850e-47 |
| Msa0601540 | Msa1448560 | 0.845400 | 4.159391e-59 | -8.615850e-47 |
| Msa0601540 | Msa1449340 | -0.832170 | 1.101172e-55 | -8.615850e-47 |
| Msa0601540 | Msa1458340 | 0.813283 | 2.768584e-51 | -8.615850e-47 |
| Msa0601540 | Msa1463900 | 0.817590 | 3.047311e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601540 | MtrunA17_Chr4g0026691 | 88.706 | 425 | 17 | 2 | 12 | 405 | 67 | 491 | 0.0 | 762 |
| Msa0601540 | MtrunA17_Chr2g0321201 | 67.294 | 425 | 107 | 3 | 12 | 405 | 69 | 492 | 0.0 | 596 |
| Msa0601540 | MtrunA17_Chr4g0026701 | 62.617 | 428 | 129 | 2 | 9 | 405 | 65 | 492 | 0.0 | 556 |
| Msa0601540 | MtrunA17_Chr2g0321181 | 62.588 | 425 | 128 | 2 | 12 | 405 | 67 | 491 | 0.0 | 548 |
| Msa0601540 | MtrunA17_Chr6g0465391 | 47.044 | 406 | 197 | 6 | 9 | 405 | 64 | 460 | 1.18e-127 | 376 |
| Msa0601540 | MtrunA17_Chr4g0026711 | 44.988 | 429 | 201 | 5 | 12 | 405 | 67 | 495 | 7.61e-123 | 365 |
| Msa0601540 | MtrunA17_Chr4g0026771 | 42.657 | 429 | 211 | 6 | 12 | 405 | 64 | 492 | 3.76e-122 | 363 |
| Msa0601540 | MtrunA17_Chr1g0176054 | 37.415 | 441 | 216 | 10 | 12 | 405 | 181 | 608 | 9.52e-88 | 278 |
| Msa0601540 | MtrunA17_Chr5g0419501 | 35.671 | 328 | 151 | 5 | 12 | 333 | 67 | 340 | 7.09e-57 | 190 |
| Msa0601540 | MtrunA17_Chr5g0431251 | 50.769 | 130 | 64 | 0 | 125 | 254 | 1 | 130 | 3.93e-43 | 147 |
| Msa0601540 | MtrunA17_Chr4g0026891 | 41.808 | 177 | 98 | 3 | 12 | 184 | 64 | 239 | 8.66e-41 | 146 |
| Msa0601540 | MtrunA17_Chr4g0026911 | 37.912 | 182 | 80 | 6 | 254 | 402 | 3 | 184 | 1.09e-32 | 121 |
| Msa0601540 | MtrunA17_Chr6g0465381 | 44.516 | 155 | 83 | 1 | 188 | 339 | 1 | 155 | 9.65e-30 | 113 |
| Msa0601540 | MtrunA17_Chr5g0431281 | 35.484 | 186 | 83 | 5 | 254 | 405 | 28 | 210 | 1.21e-26 | 106 |
| Msa0601540 | MtrunA17_Chr4g0026901 | 63.793 | 58 | 21 | 0 | 171 | 228 | 15 | 72 | 4.37e-22 | 89.7 |
| Msa0601540 | MtrunA17_Chr5g0431271 | 55.224 | 67 | 30 | 0 | 188 | 254 | 1 | 67 | 6.55e-21 | 87.8 |
| Msa0601540 | MtrunA17_Chr5g0419491 | 44.681 | 94 | 47 | 1 | 317 | 405 | 7 | 100 | 2.57e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601540 | AT4G33790.1 | 55.972 | 427 | 156 | 3 | 9 | 404 | 68 | 493 | 1.32e-173 | 494 |
| Msa0601540 | AT4G33790.2 | 56.464 | 379 | 133 | 3 | 57 | 404 | 3 | 380 | 1.02e-158 | 452 |
| Msa0601540 | AT5G22500.1 | 48.478 | 427 | 185 | 6 | 12 | 405 | 66 | 490 | 3.74e-144 | 419 |
| Msa0601540 | AT3G44540.1 | 47.541 | 427 | 191 | 5 | 12 | 405 | 66 | 492 | 2.15e-141 | 412 |
| Msa0601540 | AT3G44550.1 | 45.012 | 431 | 199 | 6 | 12 | 405 | 66 | 495 | 1.79e-128 | 379 |
| Msa0601540 | AT3G44560.1 | 45.497 | 433 | 194 | 7 | 12 | 405 | 66 | 495 | 8.14e-122 | 362 |
| Msa0601540 | AT5G22500.2 | 50.595 | 336 | 156 | 5 | 12 | 343 | 66 | 395 | 8.60e-119 | 351 |
| Msa0601540 | AT3G44550.2 | 45.220 | 387 | 175 | 5 | 55 | 405 | 1 | 386 | 1.76e-118 | 350 |
| Msa0601540 | AT5G22420.4 | 43.802 | 363 | 174 | 3 | 59 | 392 | 5 | 366 | 4.51e-109 | 325 |
| Msa0601540 | AT3G44560.3 | 46.194 | 381 | 174 | 5 | 12 | 362 | 66 | 445 | 3.11e-106 | 321 |
| Msa0601540 | AT5G22420.1 | 40.000 | 400 | 209 | 4 | 23 | 392 | 4 | 402 | 6.60e-104 | 313 |
| Msa0601540 | AT3G44560.2 | 47.714 | 350 | 176 | 5 | 12 | 355 | 66 | 414 | 3.23e-102 | 309 |
| Msa0601540 | AT5G22420.3 | 42.980 | 349 | 169 | 3 | 73 | 392 | 3 | 350 | 1.27e-101 | 306 |
| Msa0601540 | AT5G22420.6 | 42.980 | 349 | 169 | 3 | 73 | 392 | 3 | 350 | 1.27e-101 | 306 |
| Msa0601540 | AT3G44540.2 | 55.691 | 246 | 108 | 1 | 12 | 256 | 66 | 311 | 8.81e-97 | 292 |
| Msa0601540 | AT3G44540.3 | 55.691 | 246 | 108 | 1 | 12 | 256 | 66 | 311 | 8.81e-97 | 292 |
| Msa0601540 | AT3G11980.1 | 38.215 | 437 | 219 | 10 | 12 | 405 | 185 | 613 | 1.48e-88 | 280 |
| Msa0601540 | AT5G22420.5 | 40.575 | 313 | 156 | 3 | 109 | 392 | 4 | 315 | 1.13e-82 | 256 |
| Msa0601540 | AT5G22420.2 | 39.731 | 297 | 149 | 3 | 125 | 392 | 1 | 296 | 6.04e-76 | 238 |
| Msa0601540 | AT5G22420.7 | 39.731 | 297 | 149 | 3 | 125 | 392 | 1 | 296 | 6.04e-76 | 238 |
| Msa0601540 | AT3G56700.2 | 34.940 | 415 | 238 | 10 | 12 | 404 | 138 | 542 | 3.55e-70 | 231 |
| Msa0601540 | AT3G56700.1 | 32.771 | 415 | 226 | 11 | 12 | 404 | 138 | 521 | 2.22e-58 | 199 |
Find 110 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATCCATTAACACCATTTA+AGG | 0.108077 | 4_2:+44248174 | None:intergenic |
| GCCAATTATGTTAATTTAAA+AGG | 0.123383 | 4_2:-44243204 | Msa0601540:three_prime_UTR |
| TATAGTGATCTTCAAGAATT+TGG | 0.161600 | 4_2:-44245404 | Msa0601540:CDS |
| TCTAGCACTTGCTATTTAAT+TGG | 0.177551 | 4_2:+44243357 | None:intergenic |
| CACTTGGGCCATTCCTTAAA+TGG | 0.186335 | 4_2:-44248187 | Msa0601540:CDS |
| ATGCAGGTATGATATATCTT+TGG | 0.268511 | 4_2:-44248475 | Msa0601540:intron |
| CATTCCTTAAATGGTGTTAA+TGG | 0.274909 | 4_2:-44248178 | Msa0601540:CDS |
| CAAATCAGGGCAAAATTATA+TGG | 0.283252 | 4_2:-44246298 | Msa0601540:intron |
| TCTTAATCCCAAATGTATTT+AGG | 0.290851 | 4_2:+44248451 | None:intergenic |
| GTAACTTTACCAACTTTAAC+AGG | 0.313972 | 4_2:+44245335 | None:intergenic |
| TCTTTGGGCCTAAATACATT+TGG | 0.332272 | 4_2:-44248459 | Msa0601540:CDS |
| GATATGTCCCTTGGAAATAC+TGG | 0.339025 | 4_2:+44244909 | None:intergenic |
| CTAGCACTTGCTATTTAATT+GGG | 0.345627 | 4_2:+44243358 | None:intergenic |
| AAGGAATGGCCCAAGTGATA+TGG | 0.346332 | 4_2:+44248193 | None:intergenic |
| TGATATATAGCATCGTTATT+AGG | 0.349661 | 4_2:+44245458 | None:intergenic |
| CTTTGGGCCTAAATACATTT+GGG | 0.357252 | 4_2:-44248458 | Msa0601540:CDS |
| TGCAGGTATGATATATCTTT+GGG | 0.391257 | 4_2:-44248474 | Msa0601540:intron |
| CCTTTCCCTGGTTGGTCTGA+AGG | 0.399036 | 4_2:-44246157 | Msa0601540:CDS |
| AACAGAGGATGAAATTAAAA+TGG | 0.399805 | 4_2:-44248089 | Msa0601540:CDS |
| TAACACTAATGTAATTCTTC+CGG | 0.409655 | 4_2:+44243266 | None:intergenic |
| TGAAGATCACTATACATAAG+AGG | 0.410578 | 4_2:+44245413 | None:intergenic |
| TAGTGTTATTTGTTGCTTGA+TGG | 0.418692 | 4_2:-44243251 | Msa0601540:three_prime_UTR |
| GGAAAATTAACATGCTTCCT+TGG | 0.425648 | 4_2:-44245664 | Msa0601540:CDS |
| TTGATCCCAAGGTGATCAAA+TGG | 0.426070 | 4_2:-44243607 | Msa0601540:CDS |
| GGACATTTCTCTTGAAGACT+TGG | 0.429707 | 4_2:-44248684 | Msa0601540:CDS |
| TTTCCATCTTTGTTTATCCA+TGG | 0.431058 | 4_2:+44245359 | None:intergenic |
| TTCTTGAACATTCACCTCCC+TGG | 0.432633 | 4_2:-44243575 | Msa0601540:CDS |
| TTCTCTTGAAGACTTGGGAT+TGG | 0.433303 | 4_2:-44248678 | Msa0601540:CDS |
| TCATCCCATTTGATCACCTT+GGG | 0.437558 | 4_2:+44243602 | None:intergenic |
| TTTGTGAATACGTATGTGTT+TGG | 0.438148 | 4_2:+44246271 | None:intergenic |
| ATTGGAAGATTCTATTCTAA+AGG | 0.439684 | 4_2:-44248660 | Msa0601540:CDS |
| GGACATATCTTGATCTCAAA+AGG | 0.441132 | 4_2:-44244895 | Msa0601540:CDS |
| AATATGTTTGATATCACAAT+AGG | 0.448985 | 4_2:-44249342 | Msa0601540:intron |
| CTACCAGCCGCATAACAATC+TGG | 0.456645 | 4_2:+44244867 | None:intergenic |
| ATTGTGTGAGTTACAACAGC+TGG | 0.459350 | 4_2:-44248116 | Msa0601540:CDS |
| GTTCTTGTGCATGTATCAAC+AGG | 0.464567 | 4_2:-44248390 | Msa0601540:intron |
| TGAAGAACTTGGGTATTAGC+AGG | 0.466197 | 4_2:-44248063 | Msa0601540:intron |
| TAAAATGGTCATGAAGAACT+TGG | 0.472656 | 4_2:-44248074 | Msa0601540:CDS |
| CTGGTTGGTCTGAAGGTGTA+AGG | 0.475279 | 4_2:-44246150 | Msa0601540:intron |
| ATCATCCCATTTGATCACCT+TGG | 0.483313 | 4_2:+44243601 | None:intergenic |
| AATGCTTGTGGGACAATTGA+AGG | 0.483673 | 4_2:-44246236 | Msa0601540:CDS |
| GACAGTTTAGCCGTAGCCTA+TGG | 0.486521 | 4_2:-44245691 | Msa0601540:CDS |
| TGAGATCAAGATATGTCCCT+TGG | 0.491540 | 4_2:+44244900 | None:intergenic |
| TTAATTTCAGCATATGTATG+TGG | 0.494221 | 4_2:-44248244 | Msa0601540:intron |
| TGATCCCAAGGTGATCAAAT+GGG | 0.498255 | 4_2:-44243606 | Msa0601540:CDS |
| TCAAAGAACCTTTCCCTGGT+TGG | 0.502477 | 4_2:-44246165 | Msa0601540:CDS |
| TATGTATGTGGGGAGGGAGA+AGG | 0.502676 | 4_2:-44248232 | Msa0601540:CDS |
| TACGTATTCACAAAGGCAAT+GGG | 0.504053 | 4_2:-44246262 | Msa0601540:CDS |
| CACATTTATGCTCGAAGAAG+AGG | 0.507948 | 4_2:-44243505 | Msa0601540:three_prime_UTR |
| ATGTATGTGGGGAGGGAGAA+GGG | 0.514620 | 4_2:-44248231 | Msa0601540:CDS |
| ACGCCCTTGAAGAACAAGTA+AGG | 0.518384 | 4_2:+44244833 | None:intergenic |
| CATTAACACCATTTAAGGAA+TGG | 0.520795 | 4_2:+44248179 | None:intergenic |
| GAAATGAAACTCATATAAAG+TGG | 0.521620 | 4_2:+44243408 | None:intergenic |
| GCACTTTGCCAGTATTTCCA+AGG | 0.525887 | 4_2:-44244917 | Msa0601540:CDS |
| AAACCATGGATAAACAAAGA+TGG | 0.526126 | 4_2:-44245362 | Msa0601540:CDS |
| TAATTTCAGCATATGTATGT+GGG | 0.529774 | 4_2:-44248243 | Msa0601540:intron |
| AGGACTTTGTAAATGTCTAA+AGG | 0.530019 | 4_2:-44248765 | Msa0601540:CDS |
| TGAAACTCATATAAAGTGGC+AGG | 0.530589 | 4_2:+44243412 | None:intergenic |
| GACATTTCTCTTGAAGACTT+GGG | 0.532213 | 4_2:-44248683 | Msa0601540:CDS |
| GAATTCACCACCATGTCAGC+TGG | 0.534357 | 4_2:+44245515 | None:intergenic |
| GATCCAGATTGTTATGCGGC+TGG | 0.541376 | 4_2:-44244870 | Msa0601540:CDS |
| AGAATGTATTTAACCACACC+AGG | 0.543472 | 4_2:+44243557 | None:intergenic |
| GAACATTCACCTCCCTGGTG+TGG | 0.546311 | 4_2:-44243570 | Msa0601540:CDS |
| ACATTCAAAGAACCTTTCCC+TGG | 0.552357 | 4_2:-44246169 | Msa0601540:CDS |
| GAAAAGTTGACTCTAGTACC+AGG | 0.553432 | 4_2:-44248707 | Msa0601540:CDS |
| TCAGGGCAAAATTATATGGA+TGG | 0.554758 | 4_2:-44246294 | Msa0601540:intron |
| TTAGCCGTAGCCTATGGAAA+AGG | 0.556371 | 4_2:-44245685 | Msa0601540:CDS |
| GACATTTCACAGCAAAACCA+TGG | 0.562023 | 4_2:-44245376 | Msa0601540:CDS |
| AACGATGCTATATATCATGT+TGG | 0.565095 | 4_2:-44245452 | Msa0601540:CDS |
| TCAGCATATGTATGTGGGGA+GGG | 0.566541 | 4_2:-44248238 | Msa0601540:intron |
| TAATCAGATACCAGCTGACA+TGG | 0.568856 | 4_2:-44245525 | Msa0601540:intron |
| AATGTACTAGTGACAATGGC+TGG | 0.569176 | 4_2:+44246187 | None:intergenic |
| CAAATACAAACTTTGATGAA+AGG | 0.569634 | 4_2:-44248595 | Msa0601540:intron |
| CACTTTGCCAGTATTTCCAA+GGG | 0.570051 | 4_2:-44244916 | Msa0601540:CDS |
| ATTAGAGAAACCATATCACT+TGG | 0.570492 | 4_2:-44248203 | Msa0601540:CDS |
| ATGATTTGCATGAGCTACAA+TGG | 0.570741 | 4_2:+44245481 | None:intergenic |
| TGTTGACGTAGAAGAGAAAG+TGG | 0.570869 | 4_2:-44248149 | Msa0601540:CDS |
| ATGTTATTAGCATTTCTCAC+TGG | 0.572750 | 4_2:-44243316 | Msa0601540:three_prime_UTR |
| GAATACAGAGAAGTTAAGAA+TGG | 0.579699 | 4_2:-44243669 | Msa0601540:CDS |
| GCAATGGGAGAAATGCTTGT+GGG | 0.580683 | 4_2:-44246247 | Msa0601540:CDS |
| GGCAGCAAGACAAGGTGCGG+TGG | 0.582920 | 4_2:-44243648 | Msa0601540:CDS |
| TATTAAGTTCAAATTTGTGC+CGG | 0.589913 | 4_2:-44243285 | Msa0601540:three_prime_UTR |
| AAAATGGTCATGAAGAACTT+GGG | 0.590929 | 4_2:-44248073 | Msa0601540:CDS |
| AAAAGTTGACTCTAGTACCA+GGG | 0.593504 | 4_2:-44248706 | Msa0601540:CDS |
| TGTTATGTAGATAATAGGGA+AGG | 0.597823 | 4_2:-44248785 | Msa0601540:intron |
| ATGCTTGTGGGACAATTGAA+GGG | 0.600919 | 4_2:-44246235 | Msa0601540:CDS |
| TCTTAATGCAATTGTTGATG+TGG | 0.603354 | 4_2:-44245638 | Msa0601540:intron |
| CTTACACCTTCAGACCAACC+AGG | 0.605765 | 4_2:+44246151 | None:intergenic |
| ATACGTATTCACAAAGGCAA+TGG | 0.606178 | 4_2:-44246263 | Msa0601540:CDS |
| TTAAGAATGGCAGCAAGACA+AGG | 0.606337 | 4_2:-44243656 | Msa0601540:CDS |
| CCTTCAGACCAACCAGGGAA+AGG | 0.608114 | 4_2:+44246157 | None:intergenic |
| TTGTGTGAGTTACAACAGCT+GGG | 0.616176 | 4_2:-44248115 | Msa0601540:CDS |
| ACAACAGCTGGGAGCAACAG+AGG | 0.618223 | 4_2:-44248104 | Msa0601540:CDS |
| TTACACCTTCAGACCAACCA+GGG | 0.619176 | 4_2:+44246152 | None:intergenic |
| GGTGGTGAATTCAATACTAG+TGG | 0.625469 | 4_2:-44245504 | Msa0601540:CDS |
| TTTGAATGTACTAGTGACAA+TGG | 0.628163 | 4_2:+44246183 | None:intergenic |
| TCTTCAAGAGAAATGTCCCC+TGG | 0.629499 | 4_2:+44248689 | None:intergenic |
| AATTTCAGCATATGTATGTG+GGG | 0.633351 | 4_2:-44248242 | Msa0601540:intron |
| GGCAATGGGAGAAATGCTTG+TGG | 0.643168 | 4_2:-44246248 | Msa0601540:CDS |
| AGAACAAGTAAGGCTTGTAG+AGG | 0.643176 | 4_2:+44244843 | None:intergenic |
| TTCAGCATATGTATGTGGGG+AGG | 0.648340 | 4_2:-44248239 | Msa0601540:intron |
| AATGGCAGCAAGACAAGGTG+CGG | 0.652869 | 4_2:-44243651 | Msa0601540:CDS |
| TTAGAGAAACCATATCACTT+GGG | 0.677333 | 4_2:-44248202 | Msa0601540:CDS |
| GAATGTATTTAACCACACCA+GGG | 0.692289 | 4_2:+44243558 | None:intergenic |
| AAAGTTGACTCTAGTACCAG+GGG | 0.697258 | 4_2:-44248705 | Msa0601540:CDS |
| TCAGATACCAGCTGACATGG+TGG | 0.699544 | 4_2:-44245522 | Msa0601540:intron |
| GGAAGATCCAGATTGTTATG+CGG | 0.715192 | 4_2:-44244874 | Msa0601540:CDS |
| AAACACATACGTATTCACAA+AGG | 0.716346 | 4_2:-44246269 | Msa0601540:CDS |
| CAATTGCATTAAGATCTCCA+AGG | 0.727973 | 4_2:+44245647 | None:intergenic |
| TGTATTTAACCACACCAGGG+AGG | 0.742078 | 4_2:+44243561 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTATTTTTTTTTTTTTTG+AGG | - | chr4_2:44243230-44243249 | Msa0601540:three_prime_UTR | 10.0% |
| !!! | ACTATTTTTTTTTTTTTTGA+GGG | - | chr4_2:44243231-44243250 | Msa0601540:three_prime_UTR | 10.0% |
| !!! | TTAAAGTATCAATTTTATTT+TGG | - | chr4_2:44245679-44245698 | Msa0601540:CDS | 10.0% |
| !! | ATAGTATTAATTGAAATTTA+AGG | + | chr4_2:44246124-44246143 | None:intergenic | 10.0% |
| !!! | TTAATACTATTTTATGTTTT+TGG | - | chr4_2:44246134-44246153 | Msa0601540:intron | 10.0% |
| !!! | TAATACTATTTTATGTTTTT+GGG | - | chr4_2:44246135-44246154 | Msa0601540:intron | 10.0% |
| !!! | CTATTTTTGTTTATATAATT+TGG | + | chr4_2:44246470-44246489 | None:intergenic | 10.0% |
| !! | CAAATTATATAAACAAAAAT+AGG | - | chr4_2:44246468-44246487 | Msa0601540:intron | 10.0% |
| !!! | TTATCAAATAAATTCATTTT+TGG | + | chr4_2:44246536-44246555 | None:intergenic | 10.0% |
| !!! | ATTGAAATAATTTTCAAATT+TGG | + | chr4_2:44246604-44246623 | None:intergenic | 10.0% |
| !! | TTTCAAAAAAAAAATATAGT+AGG | - | chr4_2:44246709-44246728 | Msa0601540:intron | 10.0% |
| !!! | TTTTTTTAATGTAAACAAAT+AGG | - | chr4_2:44248097-44248116 | Msa0601540:CDS | 10.0% |
| !! | TAATCATAAACATATTAAAT+GGG | + | chr4_2:44248144-44248163 | None:intergenic | 10.0% |
| !! | ATAATCATAAACATATTAAA+TGG | + | chr4_2:44248145-44248164 | None:intergenic | 10.0% |
| !! | ATAATATGGTAAATAGAAAA+TGG | + | chr4_2:44243340-44243359 | None:intergenic | 15.0% |
| !! | AAATCTCACTTAAAATTATT+GGG | + | chr4_2:44243457-44243476 | None:intergenic | 15.0% |
| !! | TAAATCTCACTTAAAATTAT+TGG | + | chr4_2:44243458-44243477 | None:intergenic | 15.0% |
| !! | ATAGTTTCATTGATATATAA+GGG | + | chr4_2:44243555-44243574 | None:intergenic | 15.0% |
| !! | TATAGTTTCATTGATATATA+AGG | + | chr4_2:44243556-44243575 | None:intergenic | 15.0% |
| !!! | TATTTTGTTATGTAGATAAT+AGG | - | chr4_2:44243697-44243716 | Msa0601540:intron | 15.0% |
| !!! | ATTTTGTTATGTAGATAATA+GGG | - | chr4_2:44243698-44243717 | Msa0601540:intron | 15.0% |
| !!! | AAATTTTATTCCATTTCTTT+CGG | - | chr4_2:44243758-44243777 | Msa0601540:intron | 15.0% |
| !! | AGAATAAAAAAAATCTACTT+TGG | + | chr4_2:44243948-44243967 | None:intergenic | 15.0% |
| !!! | TAATATTTTTCCTAACTTTT+GGG | + | chr4_2:44244162-44244181 | None:intergenic | 15.0% |
| !!! | TTAATATTTTTCCTAACTTT+TGG | + | chr4_2:44244163-44244182 | None:intergenic | 15.0% |
| !!! | ACAGTATTTTTATTTTCAAA+GGG | - | chr4_2:44244191-44244210 | Msa0601540:intron | 15.0% |
| !!! | TCGATTTTATTTTTTCTTTT+CGG | + | chr4_2:44244658-44244677 | None:intergenic | 15.0% |
| !!! | TAGATTGATTTTAAGTTTAT+TGG | - | chr4_2:44244935-44244954 | Msa0601540:CDS | 15.0% |
| !! | ACTTTCAGAATAAAAAAAAT+AGG | + | chr4_2:44245826-44245845 | None:intergenic | 15.0% |
| !!! | TTTTCTTCTATTTATAGTAA+GGG | + | chr4_2:44246021-44246040 | None:intergenic | 15.0% |
| !! | TGTAAATGAAAATTAATAGT+AGG | - | chr4_2:44246419-44246438 | Msa0601540:intron | 15.0% |
| !! | TATATAAACAAAAATAGGTT+TGG | - | chr4_2:44246473-44246492 | Msa0601540:intron | 15.0% |
| !! | AAAAATAAAGCGAAAAATAT+CGG | + | chr4_2:44246559-44246578 | None:intergenic | 15.0% |
| !! | AAATAGCACATATAAAAATT+TGG | + | chr4_2:44246692-44246711 | None:intergenic | 15.0% |
| !! | TAATTAGGAATAAATACTAT+TGG | + | chr4_2:44246892-44246911 | None:intergenic | 15.0% |
| !! | ATTAATGGAGAAATATAATT+AGG | + | chr4_2:44246907-44246926 | None:intergenic | 15.0% |
| !!! | TTTTTTTATAATGACTTACA+TGG | - | chr4_2:44247270-44247289 | Msa0601540:intron | 15.0% |
| !! | AAAATATGTTAAAAAGTAAG+AGG | - | chr4_2:44247877-44247896 | Msa0601540:intron | 15.0% |
| !!! | ATTTTGTAAACAATCAATTA+TGG | + | chr4_2:44248064-44248083 | None:intergenic | 15.0% |
| !!! | ATTGATAGATTTATTTGTTT+TGG | + | chr4_2:44248234-44248253 | None:intergenic | 15.0% |
| !!! | TTTTTATCTATGCTAATTTT+CGG | - | chr4_2:44248274-44248293 | Msa0601540:intron | 15.0% |
| !!! | TCAAGAATAATATTGTTTTT+GGG | - | chr4_2:44248345-44248364 | Msa0601540:intron | 15.0% |
| !! | ACTATTTATAATATTTGTCT+AGG | - | chr4_2:44248703-44248722 | Msa0601540:CDS | 15.0% |
| !!! | CTAGCATTTATTATTTTATT+AGG | - | chr4_2:44249036-44249055 | Msa0601540:intron | 15.0% |
| !!! | ACCTTTTAAATTAACATAAT+TGG | + | chr4_2:44249287-44249306 | None:intergenic | 15.0% |
| !!! | GTAAATAGAAAATGATTTGT+GGG | + | chr4_2:44243281-44243300 | None:intergenic | 20.0% |
| !! | TAAATGTCTAAAGGAAAAAT+TGG | - | chr4_2:44243731-44243750 | Msa0601540:intron | 20.0% |
| !! | AAATGTCTAAAGGAAAAATT+GGG | - | chr4_2:44243732-44243751 | Msa0601540:intron | 20.0% |
| !! | TTGAAAATAAAAATACTGTG+AGG | + | chr4_2:44244190-44244209 | None:intergenic | 20.0% |
| !!! | CACAGTATTTTTATTTTCAA+AGG | - | chr4_2:44244190-44244209 | Msa0601540:intron | 20.0% |
| !!! | ATGCTGAAATTAATTTGTTA+AGG | + | chr4_2:44244236-44244255 | None:intergenic | 20.0% |
| !! | TCTTCTAATTATGAGAATTA+CGG | - | chr4_2:44244485-44244504 | Msa0601540:intron | 20.0% |
| !! | TCAATTAATTAACTACTTAC+TGG | + | chr4_2:44244622-44244641 | None:intergenic | 20.0% |
| !! | CAAAATATGTAGTAGTATAA+TGG | + | chr4_2:44244700-44244719 | None:intergenic | 20.0% |
| !!! | ATGAGTTGGATTTATAAAAA+TGG | - | chr4_2:44245069-44245088 | Msa0601540:intron | 20.0% |
| !!! | ACTAATATCTCATCTATTTT+AGG | + | chr4_2:44245180-44245199 | None:intergenic | 20.0% |
| !!! | TAACATGACCTATATTTTAT+TGG | - | chr4_2:44245616-44245635 | Msa0601540:intron | 20.0% |
| !!! | AGCATTTTCCAATAAAATAT+AGG | + | chr4_2:44245627-44245646 | None:intergenic | 20.0% |
| !!! | ACTTGTTAAGGATTTAAAAA+AGG | + | chr4_2:44245773-44245792 | None:intergenic | 20.0% |
| !!! | ATTCTGAAAGTGTTATTATA+AGG | - | chr4_2:44245835-44245854 | Msa0601540:intron | 20.0% |
| !! | CAATACATAATTTCTATTAG+TGG | + | chr4_2:44245901-44245920 | None:intergenic | 20.0% |
| !! | CACTAATAGAAATTATGTAT+TGG | - | chr4_2:44245899-44245918 | Msa0601540:intron | 20.0% |
| !!! | GTTTTCTTCTATTTATAGTA+AGG | + | chr4_2:44246022-44246041 | None:intergenic | 20.0% |
| !! | AAAGCCTTAAATTAGATATT+TGG | - | chr4_2:44246087-44246106 | Msa0601540:intron | 20.0% |
| !! | GTATTAATTGAAATTTAAGG+TGG | + | chr4_2:44246121-44246140 | None:intergenic | 20.0% |
| !!! | TTTTATGAACAATCAAATCA+GGG | - | chr4_2:44246176-44246195 | Msa0601540:CDS | 20.0% |
| !!! | TTTATATAATTTGGAACAGA+GGG | + | chr4_2:44246461-44246480 | None:intergenic | 20.0% |
| !!! | ATGTATTTTGTACAACTTTT+AGG | - | chr4_2:44246504-44246523 | Msa0601540:intron | 20.0% |
| !!! | TTTTTTTCTTTTCAATCAAG+AGG | - | chr4_2:44246577-44246596 | Msa0601540:intron | 20.0% |
| !! | TTCATATACCTAAAAATTTG+AGG | - | chr4_2:44246642-44246661 | Msa0601540:intron | 20.0% |
| !! | CTACTATTAATATTCAAAGT+TGG | + | chr4_2:44246669-44246688 | None:intergenic | 20.0% |
| !! | CACAAACATCAATAAAAATT+AGG | + | chr4_2:44246755-44246774 | None:intergenic | 20.0% |
| !!! | AATAAATACTATTGGTTTCA+TGG | + | chr4_2:44246884-44246903 | None:intergenic | 20.0% |
| !! | TATTATATTGTGGCAAAATA+TGG | - | chr4_2:44247325-44247344 | Msa0601540:intron | 20.0% |
| !!! | TCGTAATATAAATGATTTTG+TGG | + | chr4_2:44247403-44247422 | None:intergenic | 20.0% |
| !! | AGGAAAAAAAAAATTAGTGA+TGG | + | chr4_2:44247463-44247482 | None:intergenic | 20.0% |
| !!! | TCATATGTACTTTTTGTATT+TGG | - | chr4_2:44247523-44247542 | Msa0601540:intron | 20.0% |
| !!! | CCACTTAAAAGTATTTAATT+AGG | + | chr4_2:44247745-44247764 | None:intergenic | 20.0% |
| !!! | CCTAATTAAATACTTTTAAG+TGG | - | chr4_2:44247742-44247761 | Msa0601540:intron | 20.0% |
| !!! | AATTAAATACTTTTAAGTGG+TGG | - | chr4_2:44247745-44247764 | Msa0601540:intron | 20.0% |
| !! | TATTGTCTTGAAATTTATGT+TGG | + | chr4_2:44247814-44247833 | None:intergenic | 20.0% |
| !! | CAATCAATTATGGATAAAAT+TGG | + | chr4_2:44248054-44248073 | None:intergenic | 20.0% |
| !!! | TAGATTTATTTGTTTTGGTT+TGG | + | chr4_2:44248229-44248248 | None:intergenic | 20.0% |
| !! | AAACAATATTATTCTTGAGT+TGG | + | chr4_2:44248343-44248362 | None:intergenic | 20.0% |
| !!! | CTCAAGAATAATATTGTTTT+TGG | - | chr4_2:44248344-44248363 | Msa0601540:intron | 20.0% |
| !!! | CAAGAATAATATTGTTTTTG+GGG | - | chr4_2:44248346-44248365 | Msa0601540:intron | 20.0% |
| !! | ATATTTGTCTAGGTATTAAA+AGG | - | chr4_2:44248713-44248732 | Msa0601540:CDS | 20.0% |
| !! | GCCAATTATGTTAATTTAAA+AGG | - | chr4_2:44249283-44249302 | Msa0601540:intron | 20.0% |
| ! | GGTAAATAGAAAATGATTTG+TGG | + | chr4_2:44243282-44243301 | None:intergenic | 25.0% |
| ! | AAGTAATTACAAGGATTATG+TGG | + | chr4_2:44243303-44243322 | None:intergenic | 25.0% |
| ! | ACCAGCTTATATATTAACTA+AGG | - | chr4_2:44243621-44243640 | Msa0601540:CDS | 25.0% |
| ! | ACCTTAGTTAATATATAAGC+TGG | + | chr4_2:44243625-44243644 | None:intergenic | 25.0% |
| ! | AATGTCTAAAGGAAAAATTG+GGG | - | chr4_2:44243733-44243752 | Msa0601540:intron | 25.0% |
| ! | ATTGGAAGATTCTATTCTAA+AGG | - | chr4_2:44243827-44243846 | Msa0601540:intron | 25.0% |
| ! | CAAATACAAACTTTGATGAA+AGG | - | chr4_2:44243892-44243911 | Msa0601540:intron | 25.0% |
| !! | TGAAAGGTACAAAAAATATC+AGG | - | chr4_2:44243908-44243927 | Msa0601540:intron | 25.0% |
| ! | TCTTAATCCCAAATGTATTT+AGG | + | chr4_2:44244039-44244058 | None:intergenic | 25.0% |
| ! | AAAAAAATGCAGTAAACTCA+AGG | - | chr4_2:44244075-44244094 | Msa0601540:intron | 25.0% |
| ! | TTAATTTCAGCATATGTATG+TGG | - | chr4_2:44244243-44244262 | Msa0601540:intron | 25.0% |
| ! | TAATTTCAGCATATGTATGT+GGG | - | chr4_2:44244244-44244263 | Msa0601540:intron | 25.0% |
| ! | TAATCCATTAACACCATTTA+AGG | + | chr4_2:44244316-44244335 | None:intergenic | 25.0% |
| ! | AACAGAGGATGAAATTAAAA+TGG | - | chr4_2:44244398-44244417 | Msa0601540:intron | 25.0% |
| ! | GTAGTTAATTAATTGACACA+AGG | - | chr4_2:44244626-44244645 | Msa0601540:intron | 25.0% |
| ! | GAAAAAATAAAATCGACACA+AGG | - | chr4_2:44244662-44244681 | Msa0601540:intron | 25.0% |
| !! | GAGGAATATTTCAACTATTT+TGG | - | chr4_2:44244831-44244850 | Msa0601540:intron | 25.0% |
| !!! | TAGTACATTTTTAGTTTCGA+AGG | - | chr4_2:44244898-44244917 | Msa0601540:CDS | 25.0% |
| ! | CTCAACATAAATTTATGAGT+TGG | - | chr4_2:44245055-44245074 | Msa0601540:intron | 25.0% |
| ! | TTCCGTCAAATAAAAATATG+TGG | - | chr4_2:44245136-44245155 | Msa0601540:intron | 25.0% |
| ! | TCCGTCAAATAAAAATATGT+GGG | - | chr4_2:44245137-44245156 | Msa0601540:intron | 25.0% |
| !! | TAGTCCCAATCAAAATTTTA+TGG | - | chr4_2:44245241-44245260 | Msa0601540:intron | 25.0% |
| !!! | CTAGCCATAAAATTTTGATT+GGG | + | chr4_2:44245248-44245267 | None:intergenic | 25.0% |
| !!! | TCTAGCCATAAAATTTTGAT+TGG | + | chr4_2:44245249-44245268 | None:intergenic | 25.0% |
| !! | ATTTTTGCAATCTTAAAGCT+AGG | - | chr4_2:44245275-44245294 | Msa0601540:intron | 25.0% |
| !! | TTTTTGCAATCTTAAAGCTA+GGG | - | chr4_2:44245276-44245295 | Msa0601540:intron | 25.0% |
| !! | CTTGTGTGACTAATATTTTA+TGG | - | chr4_2:44245438-44245457 | Msa0601540:CDS | 25.0% |
| ! | AGGTCATGTTAAAATCTTAA+GGG | + | chr4_2:44245607-44245626 | None:intergenic | 25.0% |
| ! | TAGGTCATGTTAAAATCTTA+AGG | + | chr4_2:44245608-44245627 | None:intergenic | 25.0% |
| ! | ATTCTTAACATGTGTCTTAA+GGG | + | chr4_2:44245877-44245896 | None:intergenic | 25.0% |
| ! | AATTCTTAACATGTGTCTTA+AGG | + | chr4_2:44245878-44245897 | None:intergenic | 25.0% |
| !! | CTTTTATGAACAATCAAATC+AGG | - | chr4_2:44246175-44246194 | Msa0601540:CDS | 25.0% |
| !! | TTATATAATTTGGAACAGAG+GGG | + | chr4_2:44246460-44246479 | None:intergenic | 25.0% |
| !! | GTTTATATAATTTGGAACAG+AGG | + | chr4_2:44246462-44246481 | None:intergenic | 25.0% |
| !! | TGTTAATTTTCCTTTTCCAT+AGG | + | chr4_2:44246815-44246834 | None:intergenic | 25.0% |
| ! | AGATGAGACTAGAAAATTAA+TGG | + | chr4_2:44246922-44246941 | None:intergenic | 25.0% |
| ! | GTATCTGATTATTGAATAAG+TGG | + | chr4_2:44246953-44246972 | None:intergenic | 25.0% |
| ! | TGATATATAGCATCGTTATT+AGG | + | chr4_2:44247032-44247051 | None:intergenic | 25.0% |
| ! | TATAGTGATCTTCAAGAATT+TGG | - | chr4_2:44247083-44247102 | Msa0601540:intron | 25.0% |
| ! | TAGAAACCTTTAACATAAGA+AGG | + | chr4_2:44247226-44247245 | None:intergenic | 25.0% |
| !!! | ACTTACATGGTTTTAAATTG+CGG | - | chr4_2:44247283-44247302 | Msa0601540:intron | 25.0% |
| !!! | TCCTTTCTGAAATTTTTACA+AGG | - | chr4_2:44247479-44247498 | Msa0601540:intron | 25.0% |
| ! | TCCTTGTAAAAATTTCAGAA+AGG | + | chr4_2:44247483-44247502 | None:intergenic | 25.0% |
| !!! | ATGTACTTTTTGTATTTGGT+AGG | - | chr4_2:44247527-44247546 | Msa0601540:intron | 25.0% |
| !!! | TGTACTTTTTGTATTTGGTA+GGG | - | chr4_2:44247528-44247547 | Msa0601540:intron | 25.0% |
| !!! | TACGTTTTTAGAATTCTTGT+TGG | + | chr4_2:44248566-44248585 | None:intergenic | 25.0% |
| ! | CATATTTATCACCTAATACT+AGG | + | chr4_2:44248610-44248629 | None:intergenic | 25.0% |
| ! | CATGTATTATCATTACAAGT+CGG | - | chr4_2:44248633-44248652 | Msa0601540:CDS | 25.0% |
| !! | TTATGAGGAGTTGATTAATT+AGG | - | chr4_2:44248656-44248675 | Msa0601540:CDS | 25.0% |
| !! | TATGAGGAGTTGATTAATTA+GGG | - | chr4_2:44248657-44248676 | Msa0601540:CDS | 25.0% |
| ! | AAGCTTAAACATATTGTTTG+TGG | - | chr4_2:44248776-44248795 | Msa0601540:CDS | 25.0% |
| !!! | TTTGTTTTATTTTGATCCCA+AGG | - | chr4_2:44248869-44248888 | Msa0601540:intron | 25.0% |
| ! | GAAATGAAACTCATATAAAG+TGG | + | chr4_2:44249082-44249101 | None:intergenic | 25.0% |
| ! | TATTAAGTTCAAATTTGTGC+CGG | - | chr4_2:44249202-44249221 | Msa0601540:intron | 25.0% |
| ! | TAACACTAATGTAATTCTTC+CGG | + | chr4_2:44249224-44249243 | None:intergenic | 25.0% |
| ATTCTTCGCTTGCAAAATAA+GGG | + | chr4_2:44243191-44243210 | None:intergenic | 30.0% | |
| AATTCTTCGCTTGCAAAATA+AGG | + | chr4_2:44243192-44243211 | None:intergenic | 30.0% | |
| GGGATAAACAAGTAATTACA+AGG | + | chr4_2:44243312-44243331 | None:intergenic | 30.0% | |
| TAATTACTTGTTTATCCCGT+AGG | - | chr4_2:44243314-44243333 | Msa0601540:three_prime_UTR | 30.0% | |
| GTAACTATGCATGGATAATA+TGG | + | chr4_2:44243354-44243373 | None:intergenic | 30.0% | |
| AATCTCTCATTAACTCAAGT+AGG | - | chr4_2:44243431-44243450 | Msa0601540:three_prime_UTR | 30.0% | |
| CAATGAAACTATATCAACAG+AGG | - | chr4_2:44243563-44243582 | Msa0601540:CDS | 30.0% | |
| TGTTATGTAGATAATAGGGA+AGG | - | chr4_2:44243702-44243721 | Msa0601540:intron | 30.0% | |
| AGGACTTTGTAAATGTCTAA+AGG | - | chr4_2:44243722-44243741 | Msa0601540:intron | 30.0% | |
| ATGTCTAAAGGAAAAATTGG+GGG | - | chr4_2:44243734-44243753 | Msa0601540:intron | 30.0% | |
| ATGCAGGTATGATATATCTT+TGG | - | chr4_2:44244012-44244031 | Msa0601540:intron | 30.0% | |
| TGCAGGTATGATATATCTTT+GGG | - | chr4_2:44244013-44244032 | Msa0601540:intron | 30.0% | |
| CAATATCAATCCCAAAAGTT+AGG | - | chr4_2:44244149-44244168 | Msa0601540:intron | 30.0% | |
| AATTTCAGCATATGTATGTG+GGG | - | chr4_2:44244245-44244264 | Msa0601540:intron | 30.0% | |
| ATTAGAGAAACCATATCACT+TGG | - | chr4_2:44244284-44244303 | Msa0601540:intron | 30.0% | |
| TTAGAGAAACCATATCACTT+GGG | - | chr4_2:44244285-44244304 | Msa0601540:intron | 30.0% | |
| CATTAACACCATTTAAGGAA+TGG | + | chr4_2:44244311-44244330 | None:intergenic | 30.0% | |
| ! | CATTCCTTAAATGGTGTTAA+TGG | - | chr4_2:44244309-44244328 | Msa0601540:intron | 30.0% |
| TAAAATGGTCATGAAGAACT+TGG | - | chr4_2:44244413-44244432 | Msa0601540:intron | 30.0% | |
| AAAATGGTCATGAAGAACTT+GGG | - | chr4_2:44244414-44244433 | Msa0601540:intron | 30.0% | |
| GCAATGAATATCCTTAACTA+AGG | - | chr4_2:44244522-44244541 | Msa0601540:intron | 30.0% | |
| TTAACTAAGGAGAAAATCGT+GGG | - | chr4_2:44244535-44244554 | Msa0601540:intron | 30.0% | |
| ! | GCCATTTATTTAAAGCTAGA+CGG | - | chr4_2:44244568-44244587 | Msa0601540:intron | 30.0% |
| !! | TCCGTCTAGCTTTAAATAAA+TGG | + | chr4_2:44244572-44244591 | None:intergenic | 30.0% |
| CTTAAATATCCAAGAGAGAT+GGG | + | chr4_2:44244749-44244768 | None:intergenic | 30.0% | |
| TCTTAAATATCCAAGAGAGA+TGG | + | chr4_2:44244750-44244769 | None:intergenic | 30.0% | |
| !! | CCCCACATATTTTTATTTGA+CGG | + | chr4_2:44245141-44245160 | None:intergenic | 30.0% |
| CCGTCAAATAAAAATATGTG+GGG | - | chr4_2:44245138-44245157 | Msa0601540:intron | 30.0% | |
| CGTCAAATAAAAATATGTGG+GGG | - | chr4_2:44245139-44245158 | Msa0601540:intron | 30.0% | |
| GTCAAATAAAAATATGTGGG+GGG | - | chr4_2:44245140-44245159 | Msa0601540:intron | 30.0% | |
| ! | TATATTTTACTAACCACCAG+TGG | - | chr4_2:44245311-44245330 | Msa0601540:intron | 30.0% |
| !! | CACACAAGTCTTTCATTTTT+AGG | + | chr4_2:44245426-44245445 | None:intergenic | 30.0% |
| AACAAATGCTCTTAAGTCAA+GGG | + | chr4_2:44245482-44245501 | None:intergenic | 30.0% | |
| TAACAAATGCTCTTAAGTCA+AGG | + | chr4_2:44245483-44245502 | None:intergenic | 30.0% | |
| TAAAATTAACATGTGCCCTA+AGG | - | chr4_2:44245980-44245999 | Msa0601540:intron | 30.0% | |
| AAAATTAACATGTGCCCTAA+GGG | - | chr4_2:44245981-44246000 | Msa0601540:intron | 30.0% | |
| ! | AGAAGTCAAAAGTGATTTTC+TGG | - | chr4_2:44246049-44246068 | Msa0601540:intron | 30.0% |
| ! | GAAGTCAAAAGTGATTTTCT+GGG | - | chr4_2:44246050-44246069 | Msa0601540:intron | 30.0% |
| !! | TAAGGCTTTGTTTGTTTGTT+TGG | + | chr4_2:44246076-44246095 | None:intergenic | 30.0% |
| CGTGCCAAATATCTAATTTA+AGG | + | chr4_2:44246094-44246113 | None:intergenic | 30.0% | |
| CAAATCAGGGCAAAATTATA+TGG | - | chr4_2:44246189-44246208 | Msa0601540:CDS | 30.0% | |
| TTTGTGAATACGTATGTGTT+TGG | + | chr4_2:44246219-44246238 | None:intergenic | 30.0% | |
| AAACACATACGTATTCACAA+AGG | - | chr4_2:44246218-44246237 | Msa0601540:CDS | 30.0% | |
| TTTGAATGTACTAGTGACAA+TGG | + | chr4_2:44246307-44246326 | None:intergenic | 30.0% | |
| !! | AAGTTGGTCCTCAAATTTTT+AGG | + | chr4_2:44246653-44246672 | None:intergenic | 30.0% |
| ! | TGTTTGTGCTTGTTAATTAC+AGG | - | chr4_2:44246767-44246786 | Msa0601540:intron | 30.0% |
| TCTTAATGCAATTGTTGATG+TGG | - | chr4_2:44246849-44246868 | Msa0601540:intron | 30.0% | |
| AACGATGCTATATATCATGT+TGG | - | chr4_2:44247035-44247054 | Msa0601540:intron | 30.0% | |
| TGAAGATCACTATACATAAG+AGG | + | chr4_2:44247077-44247096 | None:intergenic | 30.0% | |
| GTAACTTTACCAACTTTAAC+AGG | + | chr4_2:44247155-44247174 | None:intergenic | 30.0% | |
| TTAAATTGCGGTCACAATTA+TGG | - | chr4_2:44247295-44247314 | Msa0601540:intron | 30.0% | |
| TGGTGTGAGTTATTATATTG+TGG | - | chr4_2:44247315-44247334 | Msa0601540:intron | 30.0% | |
| !! | TTGACTTGTTAGATGACAAA+TGG | + | chr4_2:44247771-44247790 | None:intergenic | 30.0% |
| ! | ATCATCTCATAATTTGGGTT+GGG | + | chr4_2:44247940-44247959 | None:intergenic | 30.0% |
| TATCATCTCATAATTTGGGT+TGG | + | chr4_2:44247941-44247960 | None:intergenic | 30.0% | |
| CCGATATCATCTCATAATTT+GGG | + | chr4_2:44247945-44247964 | None:intergenic | 30.0% | |
| CCCAAATTATGAGATGATAT+CGG | - | chr4_2:44247942-44247961 | Msa0601540:intron | 30.0% | |
| TCCGATATCATCTCATAATT+TGG | + | chr4_2:44247946-44247965 | None:intergenic | 30.0% | |
| CAATAGCTACTTAGAAAAGT+TGG | - | chr4_2:44248008-44248027 | Msa0601540:intron | 30.0% | |
| ! | TCTATAGTTGTTATTGAGAC+CGG | - | chr4_2:44248198-44248217 | Msa0601540:CDS | 30.0% |
| !! | AATATTATTCTTGAGTTGGC+AGG | + | chr4_2:44248339-44248358 | None:intergenic | 30.0% |
| AACATCAATTTGTAAGACGA+GGG | + | chr4_2:44248505-44248524 | None:intergenic | 30.0% | |
| AAACATCAATTTGTAAGACG+AGG | + | chr4_2:44248506-44248525 | None:intergenic | 30.0% | |
| GAATACAGAGAAGTTAAGAA+TGG | - | chr4_2:44248818-44248837 | Msa0601540:intron | 30.0% | |
| ! | GTGTATCTCATCGTTTTATA+TGG | + | chr4_2:44248965-44248984 | None:intergenic | 30.0% |
| !! | CTAGCACTTGCTATTTAATT+GGG | + | chr4_2:44249132-44249151 | None:intergenic | 30.0% |
| !! | TCTAGCACTTGCTATTTAAT+TGG | + | chr4_2:44249133-44249152 | None:intergenic | 30.0% |
| ATGTTATTAGCATTTCTCAC+TGG | - | chr4_2:44249171-44249190 | Msa0601540:intron | 30.0% | |
| !! | TAGTGTTATTTGTTGCTTGA+TGG | - | chr4_2:44249236-44249255 | Msa0601540:intron | 30.0% |
| GTAAATAGAAAATGGCCTAC+GGG | + | chr4_2:44243332-44243351 | None:intergenic | 35.0% | |
| GGTAAATAGAAAATGGCCTA+CGG | + | chr4_2:44243333-44243352 | None:intergenic | 35.0% | |
| GCAATATAGGTAACTATGCA+TGG | + | chr4_2:44243363-44243382 | None:intergenic | 35.0% | |
| ATTTCACGACAGTGCAATAT+AGG | + | chr4_2:44243376-44243395 | None:intergenic | 35.0% | |
| TGAGTTAATGAGAGATTACG+AGG | + | chr4_2:44243428-44243447 | None:intergenic | 35.0% | |
| ! | GTCAACTTTTCCGAAAGAAA+TGG | + | chr4_2:44243771-44243790 | None:intergenic | 35.0% |
| ! | AAAAGTTGACTCTAGTACCA+GGG | - | chr4_2:44243781-44243800 | Msa0601540:intron | 35.0% |
| GACATTTCTCTTGAAGACTT+GGG | - | chr4_2:44243804-44243823 | Msa0601540:intron | 35.0% | |
| TGCATAGAGGTGAAAACAAA+AGG | + | chr4_2:44243997-44244016 | None:intergenic | 35.0% | |
| !!! | TTTTGTTTTCACCTCTATGC+AGG | - | chr4_2:44243996-44244015 | Msa0601540:intron | 35.0% |
| GATATATCATACCTGCATAG+AGG | + | chr4_2:44244010-44244029 | None:intergenic | 35.0% | |
| TCTTTGGGCCTAAATACATT+TGG | - | chr4_2:44244028-44244047 | Msa0601540:intron | 35.0% | |
| CTTTGGGCCTAAATACATTT+GGG | - | chr4_2:44244029-44244048 | Msa0601540:intron | 35.0% | |
| ! | CACGATTTTCTCCTTAGTTA+AGG | + | chr4_2:44244536-44244555 | None:intergenic | 35.0% |
| CTTAACTAAGGAGAAAATCG+TGG | - | chr4_2:44244534-44244553 | Msa0601540:intron | 35.0% | |
| GTAGTAGTATAATGGTGCAA+AGG | + | chr4_2:44244692-44244711 | None:intergenic | 35.0% | |
| GAGATATTAGAACTCACTCA+TGG | - | chr4_2:44244773-44244792 | Msa0601540:intron | 35.0% | |
| TCGTCCTACATGTTATATCT+TGG | - | chr4_2:44244983-44245002 | Msa0601540:intron | 35.0% | |
| CGTCCTACATGTTATATCTT+GGG | - | chr4_2:44244984-44245003 | Msa0601540:intron | 35.0% | |
| ATGCCCAAGATATAACATGT+AGG | + | chr4_2:44244990-44245009 | None:intergenic | 35.0% | |
| ! | GAAATACTACGAGTGTTTTG+GGG | + | chr4_2:44245404-44245423 | None:intergenic | 35.0% |
| ! | GGAAATACTACGAGTGTTTT+GGG | + | chr4_2:44245405-44245424 | None:intergenic | 35.0% |
| ! | AGGAAATACTACGAGTGTTT+TGG | + | chr4_2:44245406-44245425 | None:intergenic | 35.0% |
| TTTCTTATCAAGCGCCTTAA+GGG | + | chr4_2:44245658-44245677 | None:intergenic | 35.0% | |
| TAGTAAGGGTTATGCTAACT+TGG | + | chr4_2:44246007-44246026 | None:intergenic | 35.0% | |
| TCAGGGCAAAATTATATGGA+TGG | - | chr4_2:44246193-44246212 | Msa0601540:CDS | 35.0% | |
| ATACGTATTCACAAAGGCAA+TGG | - | chr4_2:44246224-44246243 | Msa0601540:CDS | 35.0% | |
| TACGTATTCACAAAGGCAAT+GGG | - | chr4_2:44246225-44246244 | Msa0601540:CDS | 35.0% | |
| ! | TTTTCCTTTTCCATAGGCTA+CGG | + | chr4_2:44246809-44246828 | None:intergenic | 35.0% |
| GGAAAATTAACATGCTTCCT+TGG | - | chr4_2:44246823-44246842 | Msa0601540:intron | 35.0% | |
| CAATTGCATTAAGATCTCCA+AGG | + | chr4_2:44246843-44246862 | None:intergenic | 35.0% | |
| ! | ATGATTTGCATGAGCTACAA+TGG | + | chr4_2:44247009-44247028 | None:intergenic | 35.0% |
| ! | CATAAGAGGTTTTCTAACAG+AGG | + | chr4_2:44247063-44247082 | None:intergenic | 35.0% |
| AGTTACAGTGTTTAGCAACA+TGG | - | chr4_2:44247169-44247188 | Msa0601540:intron | 35.0% | |
| TCGCTACCTTCTTATGTTAA+AGG | - | chr4_2:44247217-44247236 | Msa0601540:intron | 35.0% | |
| ACTGCGAATTTGAGTGTATT+AGG | + | chr4_2:44247362-44247381 | None:intergenic | 35.0% | |
| AATACACTCAAATTCGCAGT+CGG | - | chr4_2:44247362-44247381 | Msa0601540:intron | 35.0% | |
| ! | TGATTTTGTGGTCTCCATAA+CGG | + | chr4_2:44247391-44247410 | None:intergenic | 35.0% |
| ! | TGATGGTGAATTAGTGATCA+TGG | + | chr4_2:44247446-44247465 | None:intergenic | 35.0% |
| GGACATATCTTGATCTCAAA+AGG | - | chr4_2:44247592-44247611 | Msa0601540:intron | 35.0% | |
| AAGCCTTACTTGTTCTTCAA+GGG | - | chr4_2:44247651-44247670 | Msa0601540:intron | 35.0% | |
| !!! | TTGTTTTGGTTTGGAACTTC+CGG | + | chr4_2:44248220-44248239 | None:intergenic | 35.0% |
| TTTCGGCAACTCAACTTATT+TGG | - | chr4_2:44248291-44248310 | Msa0601540:intron | 35.0% | |
| TTCGGCAACTCAACTTATTT+GGG | - | chr4_2:44248292-44248311 | Msa0601540:intron | 35.0% | |
| TTGGATGGTATCTGATATCA+GGG | + | chr4_2:44248408-44248427 | None:intergenic | 35.0% | |
| GTAGTGTAATGAATCTTGGA+TGG | + | chr4_2:44248423-44248442 | None:intergenic | 35.0% | |
| ACAGGTAGTGTAATGAATCT+TGG | + | chr4_2:44248427-44248446 | None:intergenic | 35.0% | |
| AACGTATATCTCAGATCCAT+TGG | - | chr4_2:44248580-44248599 | Msa0601540:intron | 35.0% | |
| ACGTATATCTCAGATCCATT+GGG | - | chr4_2:44248581-44248600 | Msa0601540:intron | 35.0% | |
| ATCATTACAAGTCGGTTATG+AGG | - | chr4_2:44248641-44248660 | Msa0601540:CDS | 35.0% | |
| GAATGTATTTAACCACACCA+GGG | + | chr4_2:44248932-44248951 | None:intergenic | 35.0% | |
| AGAATGTATTTAACCACACC+AGG | + | chr4_2:44248933-44248952 | None:intergenic | 35.0% | |
| TGAAACTCATATAAAGTGGC+AGG | + | chr4_2:44249078-44249097 | None:intergenic | 35.0% | |
| ! | GAAAAGTTGACTCTAGTACC+AGG | - | chr4_2:44243780-44243799 | Msa0601540:intron | 40.0% |
| ! | AAAGTTGACTCTAGTACCAG+GGG | - | chr4_2:44243782-44243801 | Msa0601540:intron | 40.0% |
| GGACATTTCTCTTGAAGACT+TGG | - | chr4_2:44243803-44243822 | Msa0601540:intron | 40.0% | |
| TTCTCTTGAAGACTTGGGAT+TGG | - | chr4_2:44243809-44243828 | Msa0601540:intron | 40.0% | |
| GTTCTTGTGCATGTATCAAC+AGG | - | chr4_2:44244097-44244116 | Msa0601540:intron | 40.0% | |
| TGTTGACGTAGAAGAGAAAG+TGG | - | chr4_2:44244338-44244357 | Msa0601540:intron | 40.0% | |
| ATTGTGTGAGTTACAACAGC+TGG | - | chr4_2:44244371-44244390 | Msa0601540:intron | 40.0% | |
| TTGTGTGAGTTACAACAGCT+GGG | - | chr4_2:44244372-44244391 | Msa0601540:intron | 40.0% | |
| TGAAGAACTTGGGTATTAGC+AGG | - | chr4_2:44244424-44244443 | Msa0601540:intron | 40.0% | |
| AATATCCAAGAGAGATGGGT+TGG | + | chr4_2:44244745-44244764 | None:intergenic | 40.0% | |
| TTAGAACTCACTCATGGTCA+AGG | - | chr4_2:44244779-44244798 | Msa0601540:intron | 40.0% | |
| TAGAACTCACTCATGGTCAA+GGG | - | chr4_2:44244780-44244799 | Msa0601540:intron | 40.0% | |
| AATGCTAACAAGTGCCCTTA+AGG | - | chr4_2:44245641-44245660 | Msa0601540:CDS | 40.0% | |
| GTTTCTTATCAAGCGCCTTA+AGG | + | chr4_2:44245659-44245678 | None:intergenic | 40.0% | |
| TAACAAGTGTCCTGCTCTTA+GGG | + | chr4_2:44245797-44245816 | None:intergenic | 40.0% | |
| TTATGCTAACTTGGCCCTTA+GGG | + | chr4_2:44245998-44246017 | None:intergenic | 40.0% | |
| AATGCTTGTGGGACAATTGA+AGG | - | chr4_2:44246251-44246270 | Msa0601540:CDS | 40.0% | |
| ATGCTTGTGGGACAATTGAA+GGG | - | chr4_2:44246252-44246271 | Msa0601540:CDS | 40.0% | |
| AATGTACTAGTGACAATGGC+TGG | + | chr4_2:44246303-44246322 | None:intergenic | 40.0% | |
| ACATTCAAAGAACCTTTCCC+TGG | - | chr4_2:44246318-44246337 | Msa0601540:intron | 40.0% | |
| ATGCAATTGTTGATGTGGTG+AGG | - | chr4_2:44246854-44246873 | Msa0601540:intron | 40.0% | |
| TAATCAGATACCAGCTGACA+TGG | - | chr4_2:44246962-44246981 | Msa0601540:intron | 40.0% | |
| GGTGGTGAATTCAATACTAG+TGG | - | chr4_2:44246983-44247002 | Msa0601540:intron | 40.0% | |
| GACATTTCACAGCAAAACCA+TGG | - | chr4_2:44247111-44247130 | Msa0601540:intron | 40.0% | |
| CACTTTGCCAGTATTTCCAA+GGG | - | chr4_2:44247571-44247590 | Msa0601540:intron | 40.0% | |
| GATATGTCCCTTGGAAATAC+TGG | + | chr4_2:44247581-44247600 | None:intergenic | 40.0% | |
| TGAGATCAAGATATGTCCCT+TGG | + | chr4_2:44247590-44247609 | None:intergenic | 40.0% | |
| GGAAGATCCAGATTGTTATG+CGG | - | chr4_2:44247613-44247632 | Msa0601540:intron | 40.0% | |
| AGAACAAGTAAGGCTTGTAG+AGG | + | chr4_2:44247647-44247666 | None:intergenic | 40.0% | |
| CAAGCCTTACTTGTTCTTCA+AGG | - | chr4_2:44247650-44247669 | Msa0601540:intron | 40.0% | |
| TGGGTCAAATTCTATGGTGA+GGG | + | chr4_2:44247906-44247925 | None:intergenic | 40.0% | |
| TTGGGTCAAATTCTATGGTG+AGG | + | chr4_2:44247907-44247926 | None:intergenic | 40.0% | |
| ACCATAGAATTTGACCCAAG+TGG | - | chr4_2:44247908-44247927 | Msa0601540:intron | 40.0% | |
| TCGGCAACTCAACTTATTTG+GGG | - | chr4_2:44248293-44248312 | Msa0601540:intron | 40.0% | |
| !!! | TATTGTTTTTGGGGTAGCCA+AGG | - | chr4_2:44248355-44248374 | Msa0601540:intron | 40.0% |
| TGTAACCCTTCATGTGAAAG+GGG | + | chr4_2:44248384-44248403 | None:intergenic | 40.0% | |
| GTGTAACCCTTCATGTGAAA+GGG | + | chr4_2:44248385-44248404 | None:intergenic | 40.0% | |
| TGGATGGTATCTGATATCAG+GGG | + | chr4_2:44248407-44248426 | None:intergenic | 40.0% | |
| CTTGGATGGTATCTGATATC+AGG | + | chr4_2:44248409-44248428 | None:intergenic | 40.0% | |
| TTAAGAATGGCAGCAAGACA+AGG | - | chr4_2:44248831-44248850 | Msa0601540:intron | 40.0% | |
| TTGATCCCAAGGTGATCAAA+TGG | - | chr4_2:44248880-44248899 | Msa0601540:intron | 40.0% | |
| TGATCCCAAGGTGATCAAAT+GGG | - | chr4_2:44248881-44248900 | Msa0601540:intron | 40.0% | |
| TCATCCCATTTGATCACCTT+GGG | + | chr4_2:44248888-44248907 | None:intergenic | 40.0% | |
| ATCATCCCATTTGATCACCT+TGG | + | chr4_2:44248889-44248908 | None:intergenic | 40.0% | |
| CACATTTATGCTCGAAGAAG+AGG | - | chr4_2:44248982-44249001 | Msa0601540:intron | 40.0% | |
| TCTTCAAGAGAAATGTCCCC+TGG | + | chr4_2:44243801-44243820 | None:intergenic | 45.0% | |
| TTCAGCATATGTATGTGGGG+AGG | - | chr4_2:44244248-44244267 | Msa0601540:intron | 45.0% | |
| TCAGCATATGTATGTGGGGA+GGG | - | chr4_2:44244249-44244268 | Msa0601540:intron | 45.0% | |
| AAGGAATGGCCCAAGTGATA+TGG | + | chr4_2:44244297-44244316 | None:intergenic | 45.0% | |
| CACTTGGGCCATTCCTTAAA+TGG | - | chr4_2:44244300-44244319 | Msa0601540:intron | 45.0% | |
| !! | AGAGATGGGTTGGTCATGTT+TGG | + | chr4_2:44244735-44244754 | None:intergenic | 45.0% |
| TGGTCAAGGGTCAATCATAC+CGG | - | chr4_2:44244793-44244812 | Msa0601540:intron | 45.0% | |
| ! | TGCTCTTAGGGCACTTGTTA+AGG | + | chr4_2:44245785-44245804 | None:intergenic | 45.0% |
| TTAACAAGTGCCCTAAGAGC+AGG | - | chr4_2:44245784-44245803 | Msa0601540:intron | 45.0% | |
| CTAACAAGTGTCCTGCTCTT+AGG | + | chr4_2:44245798-44245817 | None:intergenic | 45.0% | |
| GTTATGCTAACTTGGCCCTT+AGG | + | chr4_2:44245999-44246018 | None:intergenic | 45.0% | |
| GCAATGGGAGAAATGCTTGT+GGG | - | chr4_2:44246240-44246259 | Msa0601540:CDS | 45.0% | |
| TCAAAGAACCTTTCCCTGGT+TGG | - | chr4_2:44246322-44246341 | Msa0601540:intron | 45.0% | |
| TTACACCTTCAGACCAACCA+GGG | + | chr4_2:44246338-44246357 | None:intergenic | 45.0% | |
| TTAGCCGTAGCCTATGGAAA+AGG | - | chr4_2:44246802-44246821 | Msa0601540:intron | 45.0% | |
| GCACTTTGCCAGTATTTCCA+AGG | - | chr4_2:44247570-44247589 | Msa0601540:intron | 45.0% | |
| ACGCCCTTGAAGAACAAGTA+AGG | + | chr4_2:44247657-44247676 | None:intergenic | 45.0% | |
| GCCACTTGGGTCAAATTCTA+TGG | + | chr4_2:44247912-44247931 | None:intergenic | 45.0% | |
| TCATGTGAAAGGGGTAACCT+TGG | + | chr4_2:44248375-44248394 | None:intergenic | 45.0% | |
| AGGTTACCCCTTTCACATGA+AGG | - | chr4_2:44248375-44248394 | Msa0601540:intron | 45.0% | |
| GGTTACCCCTTTCACATGAA+GGG | - | chr4_2:44248376-44248395 | Msa0601540:intron | 45.0% | |
| GGTGTAACCCTTCATGTGAA+AGG | + | chr4_2:44248386-44248405 | None:intergenic | 45.0% | |
| TACCTGTTGTCATGTCACTC+AGG | - | chr4_2:44248440-44248459 | Msa0601540:CDS | 45.0% | |
| ACCTGTTGTCATGTCACTCA+GGG | - | chr4_2:44248441-44248460 | Msa0601540:CDS | 45.0% | |
| CCTAATACTAGGTGACCCAA+TGG | + | chr4_2:44248599-44248618 | None:intergenic | 45.0% | |
| CCATTGGGTCACCTAGTATT+AGG | - | chr4_2:44248596-44248615 | Msa0601540:CDS | 45.0% | |
| TTCTTGAACATTCACCTCCC+TGG | - | chr4_2:44248912-44248931 | Msa0601540:intron | 45.0% | |
| TGTATTTAACCACACCAGGG+AGG | + | chr4_2:44248929-44248948 | None:intergenic | 45.0% | |
| !! | TGTAATATATAATTAAAATA+AGG | + | chr4_2:44245021-44245040 | None:intergenic | 5.0% |
| !!! | TTATTTTAATTATATATTAC+AGG | - | chr4_2:44245020-44245039 | Msa0601540:intron | 5.0% |
| TATGTATGTGGGGAGGGAGA+AGG | - | chr4_2:44244255-44244274 | Msa0601540:intron | 50.0% | |
| ATGTATGTGGGGAGGGAGAA+GGG | - | chr4_2:44244256-44244275 | Msa0601540:intron | 50.0% | |
| GGAGAAAATCGTGGGTAGCT+AGG | - | chr4_2:44244543-44244562 | Msa0601540:intron | 50.0% | |
| CATGACCAACCCATCTCTCT+TGG | - | chr4_2:44244737-44244756 | Msa0601540:intron | 50.0% | |
| GGTCAAGGGTCAATCATACC+GGG | - | chr4_2:44244794-44244813 | Msa0601540:intron | 50.0% | |
| GTCAAGGGTCAATCATACCG+GGG | - | chr4_2:44244795-44244814 | Msa0601540:intron | 50.0% | |
| TCAAGGGTCAATCATACCGG+GGG | - | chr4_2:44244796-44244815 | Msa0601540:intron | 50.0% | |
| CAATCATACCGGGGGATTAG+AGG | - | chr4_2:44244804-44244823 | Msa0601540:intron | 50.0% | |
| ! | CCTCTTTTCCTCTAATCCCC+CGG | + | chr4_2:44244815-44244834 | None:intergenic | 50.0% |
| CAATGCATCTCGTATGCCAC+TGG | + | chr4_2:44245330-44245349 | None:intergenic | 50.0% | |
| GGCAATGGGAGAAATGCTTG+TGG | - | chr4_2:44246239-44246258 | Msa0601540:CDS | 50.0% | |
| CTTACACCTTCAGACCAACC+AGG | + | chr4_2:44246339-44246358 | None:intergenic | 50.0% | |
| !! | CTGGTTGGTCTGAAGGTGTA+AGG | - | chr4_2:44246337-44246356 | Msa0601540:intron | 50.0% |
| GACAGTTTAGCCGTAGCCTA+TGG | - | chr4_2:44246796-44246815 | Msa0601540:intron | 50.0% | |
| TCAGATACCAGCTGACATGG+TGG | - | chr4_2:44246965-44246984 | Msa0601540:intron | 50.0% | |
| GAATTCACCACCATGTCAGC+TGG | + | chr4_2:44246975-44246994 | None:intergenic | 50.0% | |
| TTCGCAGTCGGATACCGTTA+TGG | - | chr4_2:44247374-44247393 | Msa0601540:intron | 50.0% | |
| GATCCAGATTGTTATGCGGC+TGG | - | chr4_2:44247617-44247636 | Msa0601540:intron | 50.0% | |
| CTACCAGCCGCATAACAATC+TGG | + | chr4_2:44247623-44247642 | None:intergenic | 50.0% | |
| AATGGCAGCAAGACAAGGTG+CGG | - | chr4_2:44248836-44248855 | Msa0601540:intron | 50.0% | |
| ACAACAGCTGGGAGCAACAG+AGG | - | chr4_2:44244383-44244402 | Msa0601540:intron | 55.0% | |
| CCGGGGGATTAGAGGAAAAG+AGG | - | chr4_2:44244812-44244831 | Msa0601540:intron | 55.0% | |
| TGCATCTCGTATGCCACTGG+TGG | + | chr4_2:44245327-44245346 | None:intergenic | 55.0% | |
| CCTTCAGACCAACCAGGGAA+AGG | + | chr4_2:44246333-44246352 | None:intergenic | 55.0% | |
| !! | CCTTTCCCTGGTTGGTCTGA+AGG | - | chr4_2:44246330-44246349 | Msa0601540:intron | 55.0% |
| ! | GGGTTGGGTACATGCCACTT+GGG | + | chr4_2:44247925-44247944 | None:intergenic | 55.0% |
| ! | TGGGTTGGGTACATGCCACT+TGG | + | chr4_2:44247926-44247945 | None:intergenic | 55.0% |
| GCCCTGAGTGACATGACAAC+AGG | + | chr4_2:44248445-44248464 | None:intergenic | 55.0% | |
| GAACATTCACCTCCCTGGTG+TGG | - | chr4_2:44248917-44248936 | Msa0601540:intron | 55.0% | |
| GGCAGCAAGACAAGGTGCGG+TGG | - | chr4_2:44248839-44248858 | Msa0601540:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 44243148 | 44249361 | 44243148 | ID=Msa0601540;Name=Msa0601540 |
| chr4_2 | mRNA | 44243148 | 44249361 | 44243148 | ID=Msa0601540-mRNA-1;Parent=Msa0601540;Name=Msa0601540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.44|0.88|1|1|9|402|405 |
| chr4_2 | exon | 44243148 | 44243703 | 44243148 | ID=Msa0601540-mRNA-1:exon:9771;Parent=Msa0601540-mRNA-1 |
| chr4_2 | exon | 44244848 | 44244960 | 44244848 | ID=Msa0601540-mRNA-1:exon:9770;Parent=Msa0601540-mRNA-1 |
| chr4_2 | exon | 44245349 | 44245540 | 44245349 | ID=Msa0601540-mRNA-1:exon:9769;Parent=Msa0601540-mRNA-1 |
| chr4_2 | exon | 44245639 | 44245720 | 44245639 | ID=Msa0601540-mRNA-1:exon:9768;Parent=Msa0601540-mRNA-1 |
| chr4_2 | exon | 44246151 | 44246312 | 44246151 | ID=Msa0601540-mRNA-1:exon:9767;Parent=Msa0601540-mRNA-1 |
| chr4_2 | exon | 44248064 | 44248256 | 44248064 | ID=Msa0601540-mRNA-1:exon:9766;Parent=Msa0601540-mRNA-1 |
| chr4_2 | exon | 44248391 | 44248491 | 44248391 | ID=Msa0601540-mRNA-1:exon:9765;Parent=Msa0601540-mRNA-1 |
| chr4_2 | exon | 44248596 | 44248797 | 44248596 | ID=Msa0601540-mRNA-1:exon:9764;Parent=Msa0601540-mRNA-1 |
| chr4_2 | exon | 44249343 | 44249361 | 44249343 | ID=Msa0601540-mRNA-1:exon:9763;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44249343 | 44249361 | 44249343 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44248596 | 44248797 | 44248596 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44248391 | 44248491 | 44248391 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44248064 | 44248256 | 44248064 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44246151 | 44246312 | 44246151 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44245639 | 44245720 | 44245639 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44245349 | 44245540 | 44245349 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44244848 | 44244960 | 44244848 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | CDS | 44243550 | 44243703 | 44243550 | ID=Msa0601540-mRNA-1:cds;Parent=Msa0601540-mRNA-1 |
| chr4_2 | three_prime_UTR | 44243148 | 44243549 | 44243148 | ID=Msa0601540-mRNA-1:three_prime_utr;Parent=Msa0601540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
