Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117240 | XP_013467498.1 | 96.246 | 293 | 2 | 3 | 1 | 288 | 1 | 289 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117240 | sp|Q9FL54|DNAJ6_ARATH | 62.838 | 296 | 90 | 6 | 1 | 288 | 1 | 284 | 3.30e-114 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117240 | A0A072VTU1 | 96.246 | 293 | 2 | 3 | 1 | 288 | 1 | 289 | 0.0 | 562 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0117240 | 0.810117 | 1.351598e-50 | -8.615850e-47 |
| Msa0043980 | Msa0117240 | 0.802439 | 5.607874e-49 | -8.615850e-47 |
| Msa0054480 | Msa0117240 | 0.821185 | 4.617433e-53 | -8.615850e-47 |
| Msa0070180 | Msa0117240 | 0.847962 | 8.297665e-60 | -8.615850e-47 |
| Msa0083280 | Msa0117240 | 0.804931 | 1.704690e-49 | -8.615850e-47 |
| Msa0084380 | Msa0117240 | 0.826232 | 3.037724e-54 | -8.615850e-47 |
| Msa0090360 | Msa0117240 | 0.807914 | 4.004678e-50 | -8.615850e-47 |
| Msa0117240 | Msa0137840 | 0.800924 | 1.146873e-48 | -8.615850e-47 |
| Msa0117240 | Msa0157100 | 0.805323 | 1.410933e-49 | -8.615850e-47 |
| Msa0117240 | Msa0157290 | 0.809576 | 1.767315e-50 | -8.615850e-47 |
| Msa0117240 | Msa0159770 | 0.813928 | 1.996323e-51 | -8.615850e-47 |
| Msa0117240 | Msa0173990 | 0.807295 | 5.419990e-50 | -8.615850e-47 |
| Msa0117240 | Msa0178930 | 0.802495 | 5.460058e-49 | -8.615850e-47 |
| Msa0117240 | Msa0180500 | 0.805087 | 1.581410e-49 | -8.615850e-47 |
| Msa0117240 | Msa0184040 | 0.802963 | 4.370866e-49 | -8.615850e-47 |
| Msa0117240 | Msa0212990 | 0.806520 | 7.904989e-50 | -8.615850e-47 |
| Msa0117240 | Msa0216240 | 0.804612 | 1.987276e-49 | -8.615850e-47 |
| Msa0117240 | Msa0222620 | 0.822029 | 2.947217e-53 | -8.615850e-47 |
| Msa0117240 | Msa0228070 | 0.808061 | 3.726717e-50 | -8.615850e-47 |
| Msa0117240 | Msa0243100 | 0.817277 | 3.584323e-52 | -8.615850e-47 |
| Msa0117240 | Msa0259500 | 0.803763 | 2.984724e-49 | -8.615850e-47 |
| Msa0117240 | Msa0262340 | 0.803948 | 2.732469e-49 | -8.615850e-47 |
| Msa0117240 | Msa0264150 | 0.816341 | 5.812911e-52 | -8.615850e-47 |
| Msa0117240 | Msa0271530 | 0.805974 | 1.030098e-49 | -8.615850e-47 |
| Msa0117240 | Msa0287410 | 0.810874 | 9.276581e-51 | -8.615850e-47 |
| Msa0117240 | Msa0287650 | 0.815720 | 8.001021e-52 | -8.615850e-47 |
| Msa0117240 | Msa0305700 | 0.801913 | 7.193279e-49 | -8.615850e-47 |
| Msa0117240 | Msa0319170 | 0.816691 | 4.852451e-52 | -8.615850e-47 |
| Msa0117240 | Msa0326110 | 0.805106 | 1.566572e-49 | -8.615850e-47 |
| Msa0117240 | Msa0333030 | 0.807124 | 5.891953e-50 | -8.615850e-47 |
| Msa0117240 | Msa0339250 | 0.802963 | 4.372183e-49 | -8.615850e-47 |
| Msa0117240 | Msa0341540 | 0.811375 | 7.224879e-51 | -8.615850e-47 |
| Msa0117240 | Msa0345970 | 0.813888 | 2.037825e-51 | -8.615850e-47 |
| Msa0117240 | Msa0363790 | 0.804383 | 2.218169e-49 | -8.615850e-47 |
| Msa0117240 | Msa0410650 | 0.804327 | 2.278282e-49 | -8.615850e-47 |
| Msa0117240 | Msa0428080 | 0.806500 | 7.983207e-50 | -8.615850e-47 |
| Msa0117240 | Msa0453000 | 0.807647 | 4.562735e-50 | -8.615850e-47 |
| Msa0117240 | Msa0477130 | -0.800542 | 1.372723e-48 | -8.615850e-47 |
| Msa0117240 | Msa0479970 | 0.807433 | 5.066219e-50 | -8.615850e-47 |
| Msa0117240 | Msa0481530 | 0.808761 | 2.642309e-50 | -8.615850e-47 |
| Msa0117240 | Msa0484780 | 0.828711 | 7.721513e-55 | -8.615850e-47 |
| Msa0117240 | Msa0485120 | 0.801670 | 8.070684e-49 | -8.615850e-47 |
| Msa0117240 | Msa0507680 | 0.802379 | 5.770257e-49 | -8.615850e-47 |
| Msa0117240 | Msa0523460 | 0.808977 | 2.375382e-50 | -8.615850e-47 |
| Msa0117240 | Msa0529890 | 0.810367 | 1.194268e-50 | -8.615850e-47 |
| Msa0117240 | Msa0545070 | 0.820563 | 6.421314e-53 | -8.615850e-47 |
| Msa0117240 | Msa0555020 | 0.813092 | 3.048648e-51 | -8.615850e-47 |
| Msa0117240 | Msa0557070 | 0.808751 | 2.655522e-50 | -8.615850e-47 |
| Msa0117240 | Msa0563840 | 0.800750 | 1.244886e-48 | -8.615850e-47 |
| Msa0117240 | Msa0577500 | 0.824426 | 8.122967e-54 | -8.615850e-47 |
| Msa0117240 | Msa0585560 | 0.813067 | 3.087814e-51 | -8.615850e-47 |
| Msa0117240 | Msa0610430 | 0.810087 | 1.372481e-50 | -8.615850e-47 |
| Msa0117240 | Msa0617640 | 0.811637 | 6.337692e-51 | -8.615850e-47 |
| Msa0117240 | Msa0624470 | 0.806204 | 9.215605e-50 | -8.615850e-47 |
| Msa0117240 | Msa0625720 | 0.810897 | 9.172906e-51 | -8.615850e-47 |
| Msa0117240 | Msa0657610 | 0.814808 | 1.275711e-51 | -8.615850e-47 |
| Msa0117240 | Msa0657970 | 0.810481 | 1.128128e-50 | -8.615850e-47 |
| Msa0117240 | Msa0662500 | 0.818525 | 1.872923e-52 | -8.615850e-47 |
| Msa0117240 | Msa0663390 | 0.818780 | 1.639788e-52 | -8.615850e-47 |
| Msa0117240 | Msa0667050 | 0.818533 | 1.865700e-52 | -8.615850e-47 |
| Msa0117240 | Msa0687020 | 0.820095 | 8.220000e-53 | -8.615850e-47 |
| Msa0117240 | Msa0691380 | 0.811218 | 7.814781e-51 | -8.615850e-47 |
| Msa0117240 | Msa0692830 | 0.812560 | 3.987228e-51 | -8.615850e-47 |
| Msa0117240 | Msa0708520 | 0.802893 | 4.519856e-49 | -8.615850e-47 |
| Msa0117240 | Msa0715700 | 0.803507 | 3.372407e-49 | -8.615850e-47 |
| Msa0117240 | Msa0740510 | 0.808523 | 2.969763e-50 | -8.615850e-47 |
| Msa0117240 | Msa0762970 | 0.827057 | 1.930607e-54 | -8.615850e-47 |
| Msa0117240 | Msa0787470 | 0.800193 | 1.616607e-48 | -8.615850e-47 |
| Msa0117240 | Msa0794670 | 0.801305 | 9.585505e-49 | -8.615850e-47 |
| Msa0117240 | Msa0820770 | 0.819551 | 1.094735e-52 | -8.615850e-47 |
| Msa0117240 | Msa0820850 | 0.814415 | 1.558518e-51 | -8.615850e-47 |
| Msa0117240 | Msa0824660 | 0.800595 | 1.338729e-48 | -8.615850e-47 |
| Msa0117240 | Msa0832150 | 0.801556 | 8.518269e-49 | -8.615850e-47 |
| Msa0117240 | Msa0840820 | 0.803120 | 4.056384e-49 | -8.615850e-47 |
| Msa0117240 | Msa0861090 | 0.814612 | 1.410066e-51 | -8.615850e-47 |
| Msa0117240 | Msa0861130 | 0.808089 | 3.675257e-50 | -8.615850e-47 |
| Msa0117240 | Msa0861930 | 0.806541 | 7.824648e-50 | -8.615850e-47 |
| Msa0117240 | Msa0863930 | 0.802769 | 4.792924e-49 | -8.615850e-47 |
| Msa0117240 | Msa0880140 | 0.805168 | 1.520281e-49 | -8.615850e-47 |
| Msa0117240 | Msa0898750 | 0.807670 | 4.511757e-50 | -8.615850e-47 |
| Msa0117240 | Msa0928130 | 0.804821 | 1.797464e-49 | -8.615850e-47 |
| Msa0117240 | Msa0930860 | 0.800261 | 1.566254e-48 | -8.615850e-47 |
| Msa0117240 | Msa0947660 | 0.822709 | 2.048799e-53 | -8.615850e-47 |
| Msa0117240 | Msa0964310 | 0.812330 | 4.475761e-51 | -8.615850e-47 |
| Msa0117240 | Msa0969520 | 0.810378 | 1.187480e-50 | -8.615850e-47 |
| Msa0117240 | Msa0970030 | 0.800831 | 1.198138e-48 | -8.615850e-47 |
| Msa0117240 | Msa0993600 | 0.801962 | 7.029216e-49 | -8.615850e-47 |
| Msa0117240 | Msa0997970 | 0.816701 | 4.829162e-52 | -8.615850e-47 |
| Msa0117240 | Msa1030970 | 0.809331 | 1.994553e-50 | -8.615850e-47 |
| Msa0117240 | Msa1035480 | 0.804019 | 2.641234e-49 | -8.615850e-47 |
| Msa0117240 | Msa1045200 | 0.800151 | 1.649008e-48 | -8.615850e-47 |
| Msa0117240 | Msa1075540 | 0.842283 | 2.842791e-58 | -8.615850e-47 |
| Msa0117240 | Msa1075650 | 0.810644 | 1.040351e-50 | -8.615850e-47 |
| Msa0117240 | Msa1078170 | 0.807961 | 3.913151e-50 | -8.615850e-47 |
| Msa0117240 | Msa1079590 | 0.815472 | 9.086309e-52 | -8.615850e-47 |
| Msa0117240 | Msa1082500 | 0.820176 | 7.878373e-53 | -8.615850e-47 |
| Msa0117240 | Msa1085200 | 0.806022 | 1.006436e-49 | -8.615850e-47 |
| Msa0117240 | Msa1131220 | 0.809255 | 2.070693e-50 | -8.615850e-47 |
| Msa0117240 | Msa1137570 | 0.805010 | 1.641001e-49 | -8.615850e-47 |
| Msa0117240 | Msa1139890 | 0.807655 | 4.546011e-50 | -8.615850e-47 |
| Msa0117240 | Msa1154280 | 0.803646 | 3.156086e-49 | -8.615850e-47 |
| Msa0117240 | Msa1172670 | 0.801938 | 7.110535e-49 | -8.615850e-47 |
| Msa0117240 | Msa1174040 | 0.804223 | 2.395365e-49 | -8.615850e-47 |
| Msa0117240 | Msa1193290 | 0.825776 | 3.896921e-54 | -8.615850e-47 |
| Msa0117240 | Msa1203250 | 0.806470 | 8.100700e-50 | -8.615850e-47 |
| Msa0117240 | Msa1204530 | 0.808629 | 2.819269e-50 | -8.615850e-47 |
| Msa0117240 | Msa1204630 | 0.802404 | 5.701327e-49 | -8.615850e-47 |
| Msa0117240 | Msa1224480 | 0.803891 | 2.807182e-49 | -8.615850e-47 |
| Msa0117240 | Msa1252740 | 0.818632 | 1.771136e-52 | -8.615850e-47 |
| Msa0117240 | Msa1284680 | 0.803661 | 3.133820e-49 | -8.615850e-47 |
| Msa0117240 | Msa1294820 | 0.811232 | 7.761529e-51 | -8.615850e-47 |
| Msa0117240 | Msa1303240 | 0.813451 | 2.543322e-51 | -8.615850e-47 |
| Msa0117240 | Msa1303250 | 0.810796 | 9.645245e-51 | -8.615850e-47 |
| Msa0117240 | Msa1305190 | 0.801258 | 9.802939e-49 | -8.615850e-47 |
| Msa0117240 | Msa1305340 | 0.816746 | 4.718059e-52 | -8.615850e-47 |
| Msa0117240 | Msa1305710 | 0.801036 | 1.087963e-48 | -8.615850e-47 |
| Msa0117240 | Msa1306840 | 0.825786 | 3.875680e-54 | -8.615850e-47 |
| Msa0117240 | Msa1306850 | 0.806418 | 8.306678e-50 | -8.615850e-47 |
| Msa0117240 | Msa1320620 | 0.801346 | 9.402361e-49 | -8.615850e-47 |
| Msa0117240 | Msa1331000 | 0.806614 | 7.550647e-50 | -8.615850e-47 |
| Msa0117240 | Msa1342900 | 0.816530 | 5.274485e-52 | -8.615850e-47 |
| Msa0117240 | Msa1346370 | 0.801342 | 9.422406e-49 | -8.615850e-47 |
| Msa0117240 | Msa1353980 | 0.830569 | 2.728219e-55 | -8.615850e-47 |
| Msa0117240 | Msa1359040 | 0.813647 | 2.302758e-51 | -8.615850e-47 |
| Msa0117240 | Msa1370070 | -0.814783 | 1.291895e-51 | -8.615850e-47 |
| Msa0117240 | Msa1385460 | 0.811022 | 8.619514e-51 | -8.615850e-47 |
| Msa0117240 | Msa1385670 | 0.802553 | 5.310902e-49 | -8.615850e-47 |
| Msa0117240 | Msa1407580 | 0.812387 | 4.350566e-51 | -8.615850e-47 |
| Msa0117240 | Msa1424750 | 0.813626 | 2.327248e-51 | -8.615850e-47 |
| Msa0117240 | Msa1427230 | 0.814144 | 1.789275e-51 | -8.615850e-47 |
| Msa0117240 | Msa1433390 | 0.807764 | 4.310073e-50 | -8.615850e-47 |
| Msa0117240 | Msa1451160 | 0.811794 | 5.858649e-51 | -8.615850e-47 |
| Msa0117240 | Msa1460830 | 0.803063 | 4.167684e-49 | -8.615850e-47 |
| Msa0117240 | Msa1466540 | 0.823145 | 1.621511e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117240 | MtrunA17_Chr1g0173931 | 96.246 | 293 | 2 | 3 | 1 | 288 | 1 | 289 | 0.0 | 562 |
| Msa0117240 | MtrunA17_Chr7g0258061 | 77.075 | 253 | 53 | 2 | 29 | 277 | 10 | 261 | 1.30e-141 | 399 |
| Msa0117240 | MtrunA17_Chr7g0242951 | 55.556 | 63 | 25 | 1 | 43 | 102 | 29 | 91 | 1.34e-13 | 70.9 |
| Msa0117240 | MtrunA17_Chr7g0271891 | 49.231 | 65 | 25 | 2 | 43 | 99 | 18 | 82 | 3.73e-13 | 66.2 |
| Msa0117240 | MtrunA17_Chr2g0282741 | 47.692 | 65 | 29 | 1 | 43 | 102 | 6 | 70 | 8.86e-13 | 67.8 |
| Msa0117240 | MtrunA17_Chr4g0040501 | 49.231 | 65 | 28 | 1 | 43 | 102 | 6 | 70 | 1.07e-12 | 67.4 |
| Msa0117240 | MtrunA17_Chr2g0282761 | 41.573 | 89 | 41 | 3 | 43 | 123 | 6 | 91 | 3.78e-12 | 65.9 |
| Msa0117240 | MtrunA17_Chr3g0138471 | 44.615 | 65 | 31 | 1 | 43 | 102 | 6 | 70 | 5.90e-12 | 65.1 |
| Msa0117240 | MtrunA17_Chr3g0123861 | 50.794 | 63 | 28 | 1 | 43 | 102 | 84 | 146 | 2.15e-11 | 63.9 |
| Msa0117240 | MtrunA17_Chr7g0269841 | 48.485 | 66 | 30 | 1 | 41 | 102 | 26 | 91 | 2.65e-11 | 63.2 |
| Msa0117240 | MtrunA17_Chr2g0324921 | 46.154 | 65 | 30 | 1 | 43 | 102 | 6 | 70 | 4.91e-11 | 62.4 |
| Msa0117240 | MtrunA17_Chr4g0006391 | 44.615 | 65 | 31 | 1 | 43 | 102 | 6 | 70 | 5.45e-11 | 62.4 |
| Msa0117240 | MtrunA17_Chr2g0333221 | 49.206 | 63 | 29 | 1 | 43 | 102 | 72 | 134 | 6.82e-11 | 62.4 |
| Msa0117240 | MtrunA17_Chr3g0087741 | 49.231 | 65 | 29 | 1 | 42 | 102 | 90 | 154 | 7.69e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117240 | AT3G12170.1 | 69.048 | 252 | 71 | 2 | 30 | 277 | 3 | 251 | 5.99e-127 | 362 |
| Msa0117240 | AT3G12170.2 | 69.048 | 252 | 71 | 2 | 30 | 277 | 39 | 287 | 5.14e-126 | 361 |
| Msa0117240 | AT5G06910.1 | 62.838 | 296 | 90 | 6 | 1 | 288 | 1 | 284 | 3.35e-115 | 333 |
| Msa0117240 | AT5G01390.3 | 46.970 | 66 | 30 | 1 | 42 | 102 | 5 | 70 | 1.05e-12 | 66.6 |
| Msa0117240 | AT5G01390.4 | 46.970 | 66 | 30 | 1 | 42 | 102 | 5 | 70 | 1.08e-12 | 66.6 |
| Msa0117240 | AT1G56300.1 | 44.928 | 69 | 30 | 2 | 39 | 99 | 11 | 79 | 1.34e-12 | 64.7 |
| Msa0117240 | AT1G56300.2 | 44.000 | 75 | 33 | 3 | 39 | 105 | 11 | 84 | 1.41e-12 | 63.9 |
| Msa0117240 | AT5G01390.2 | 46.970 | 66 | 30 | 1 | 42 | 102 | 5 | 70 | 2.10e-12 | 66.2 |
| Msa0117240 | AT5G01390.1 | 46.970 | 66 | 30 | 1 | 42 | 102 | 5 | 70 | 2.81e-12 | 66.6 |
| Msa0117240 | AT4G28480.2 | 47.692 | 65 | 29 | 1 | 43 | 102 | 6 | 70 | 4.05e-12 | 65.9 |
| Msa0117240 | AT4G39960.1 | 46.341 | 82 | 38 | 2 | 42 | 120 | 86 | 164 | 4.56e-12 | 66.2 |
| Msa0117240 | AT4G39960.2 | 46.341 | 82 | 38 | 2 | 42 | 120 | 86 | 164 | 4.56e-12 | 66.2 |
| Msa0117240 | AT3G08910.1 | 47.692 | 65 | 29 | 1 | 43 | 102 | 6 | 70 | 5.17e-12 | 65.9 |
| Msa0117240 | AT4G28480.1 | 47.692 | 65 | 29 | 1 | 43 | 102 | 6 | 70 | 5.81e-12 | 65.9 |
| Msa0117240 | AT5G25530.2 | 46.154 | 65 | 30 | 1 | 43 | 102 | 6 | 70 | 9.07e-12 | 65.1 |
| Msa0117240 | AT3G14200.1 | 45.946 | 74 | 33 | 1 | 33 | 99 | 4 | 77 | 1.07e-11 | 63.9 |
| Msa0117240 | AT1G59980.1 | 41.772 | 79 | 42 | 1 | 28 | 102 | 10 | 88 | 1.13e-11 | 65.1 |
| Msa0117240 | AT1G59980.2 | 41.772 | 79 | 42 | 1 | 28 | 102 | 10 | 88 | 1.18e-11 | 64.7 |
| Msa0117240 | AT5G48030.1 | 53.125 | 64 | 26 | 1 | 43 | 102 | 96 | 159 | 2.73e-11 | 63.9 |
| Msa0117240 | AT2G22360.1 | 52.381 | 63 | 27 | 1 | 43 | 102 | 88 | 150 | 2.88e-11 | 63.9 |
| Msa0117240 | AT1G68370.1 | 39.815 | 108 | 55 | 3 | 31 | 128 | 7 | 114 | 4.02e-11 | 63.5 |
| Msa0117240 | AT2G20560.1 | 44.615 | 65 | 31 | 1 | 43 | 102 | 6 | 70 | 4.69e-11 | 63.2 |
| Msa0117240 | AT3G08970.1 | 52.381 | 63 | 27 | 1 | 43 | 102 | 29 | 91 | 6.41e-11 | 63.2 |
| Msa0117240 | AT3G08970.2 | 52.381 | 63 | 27 | 1 | 43 | 102 | 29 | 91 | 6.41e-11 | 63.2 |
| Msa0117240 | AT5G03160.1 | 50.000 | 62 | 26 | 1 | 43 | 99 | 372 | 433 | 7.92e-11 | 62.8 |
Find 76 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATAGTCTGTTTCTTTCA+TGG | 0.212969 | 1_3:-37600020 | Msa0117240:three_prime_UTR |
| AGAACATTGGCAACTTAAAT+TGG | 0.217792 | 1_3:+37599875 | None:intergenic |
| ATGTTGTGCGTTTGAGTTTA+TGG | 0.249043 | 1_3:+37599751 | None:intergenic |
| CAATGTTCTTGGTGAGTTTA+TGG | 0.261683 | 1_3:-37599861 | Msa0117240:three_prime_UTR |
| ATTTAAGTTGCCAATGTTCT+TGG | 0.261737 | 1_3:-37599872 | Msa0117240:three_prime_UTR |
| CAGAAGAAAAGAAAAGAAAA+TGG | 0.268352 | 1_3:-37603673 | Msa0117240:exon |
| ATGATTTATTATTAGGTTCT+TGG | 0.271621 | 1_3:-37603453 | Msa0117240:intron |
| AATCGGTGCGAGTCGAGTTT+AGG | 0.311498 | 1_3:+37600707 | None:intergenic |
| GAATTCCTCTTCAGAGGGTT+CGG | 0.312967 | 1_3:+37600117 | None:intergenic |
| AAAAGAAAGCGTACAAGAAA+TGG | 0.336249 | 1_3:-37600400 | Msa0117240:CDS |
| TCTGAAAACCAGGACCTTGC+AGG | 0.336660 | 1_3:-37601081 | Msa0117240:intron |
| GGAGTTTGAAGCAAACTATA+GGG | 0.361113 | 1_3:-37600898 | Msa0117240:CDS |
| TTACCTGGTAGAGTGAGTTT+TGG | 0.362358 | 1_3:+37603541 | None:intergenic |
| TCGTCTCTAATCTCAAAATA+TGG | 0.366431 | 1_3:-37600154 | Msa0117240:CDS |
| TTTAAATTAATAACAAGGAT+TGG | 0.367890 | 1_3:+37603797 | None:intergenic |
| CGAGCTCTTTATGATGAAAC+TGG | 0.370711 | 1_3:-37602006 | Msa0117240:CDS |
| AGGAGTTTGAAGCAAACTAT+AGG | 0.376480 | 1_3:-37600899 | Msa0117240:CDS |
| AAAGAAGGCGTATCACAAAT+TGG | 0.377076 | 1_3:-37603400 | Msa0117240:CDS |
| AGAGTAAGAAGAAGAGAAGT+AGG | 0.379816 | 1_3:-37603647 | Msa0117240:CDS |
| TTAAATTAATAACAAGGATT+GGG | 0.380930 | 1_3:+37603798 | None:intergenic |
| TCATCACCAGGATTCTTATC+AGG | 0.385427 | 1_3:+37603363 | None:intergenic |
| CATTTCTTCATCTTCGTTGT+CGG | 0.385746 | 1_3:+37603614 | None:intergenic |
| AAGAAACAGACTATACAAAA+AGG | 0.386723 | 1_3:+37600026 | None:intergenic |
| ATTGATGAGGCTATAGCTTC+TGG | 0.387082 | 1_3:-37600674 | Msa0117240:intron |
| ACTCGACTCGCACCGATTCA+AGG | 0.388457 | 1_3:-37600702 | Msa0117240:CDS |
| AATTCCTCTTCAGAGGGTTC+GGG | 0.389041 | 1_3:+37600118 | None:intergenic |
| CAAAATGTTATCTCCATTCT+CGG | 0.394188 | 1_3:-37602042 | Msa0117240:CDS |
| GTCACTTCACTATTGTTAGT+TGG | 0.400433 | 1_3:-37599992 | Msa0117240:three_prime_UTR |
| CGAAGATGAAGAAATGAAAT+CGG | 0.415140 | 1_3:-37603607 | Msa0117240:CDS |
| AATCTTCTGCAGATCAAGTA+AGG | 0.426126 | 1_3:-37600251 | Msa0117240:intron |
| CCTTGCAGGAGATGTAGTTC+AGG | 0.442757 | 1_3:-37601067 | Msa0117240:CDS |
| CTTCAGAGGGTTCGGGCACA+TGG | 0.444877 | 1_3:+37600125 | None:intergenic |
| GGTTCCTTGGAGGCTATAAA+TGG | 0.449963 | 1_3:+37599666 | None:intergenic |
| AGAAGAAAAGAAAAGAAAAT+GGG | 0.457144 | 1_3:-37603672 | Msa0117240:exon |
| AAAATGTTATCTCCATTCTC+GGG | 0.461779 | 1_3:-37602041 | Msa0117240:CDS |
| AATGCAAGGGTAATATGAAC+AGG | 0.467520 | 1_3:-37600833 | Msa0117240:intron |
| TAAAGGACTAGTTGGCGGCT+TGG | 0.473285 | 1_3:+37600358 | None:intergenic |
| TGATTTAATTAGACTTTACA+AGG | 0.489056 | 1_3:-37600856 | Msa0117240:CDS |
| TGATGGCAGAAGCGAAAGGC+GGG | 0.489762 | 1_3:-37603830 | Msa0117240:five_prime_UTR |
| CTTCGTAAAGGACTAGTTGG+CGG | 0.491008 | 1_3:+37600353 | None:intergenic |
| TATATCTGCAGGAGAACTAA+AGG | 0.492660 | 1_3:-37600423 | Msa0117240:intron |
| AAAGAAAGCGTACAAGAAAT+GGG | 0.493039 | 1_3:-37600399 | Msa0117240:CDS |
| CATCAATAATATCCTTGAAT+CGG | 0.494545 | 1_3:+37600690 | None:intergenic |
| TGTTACTCATTCTGCCATCA+TGG | 0.494907 | 1_3:-37599812 | Msa0117240:three_prime_UTR |
| TTCCTTCGTAAAGGACTAGT+TGG | 0.496942 | 1_3:+37600350 | None:intergenic |
| CTTCATCCTGATAAGAATCC+TGG | 0.503078 | 1_3:-37603369 | Msa0117240:intron |
| GCTTCGAATTCCTCTTCAGA+GGG | 0.517725 | 1_3:+37600112 | None:intergenic |
| CAAGTTGGTTACTTTCGCCT+AGG | 0.529009 | 1_3:+37600049 | None:intergenic |
| TTTCAGAACATTGTACAAGA+AGG | 0.533814 | 1_3:-37601031 | Msa0117240:intron |
| GAGTAAGAAGAAGAGAAGTA+GGG | 0.538087 | 1_3:-37603646 | Msa0117240:CDS |
| TAGACTTTACAAGGAATGCA+AGG | 0.538206 | 1_3:-37600847 | Msa0117240:CDS |
| TTAAATTTAAATTAATAACA+AGG | 0.545577 | 1_3:+37603792 | None:intergenic |
| TAGCTTCATTCAGACTCAAA+TGG | 0.549828 | 1_3:+37599774 | None:intergenic |
| AAATTAATGCACCTCCATGA+TGG | 0.553955 | 1_3:+37599798 | None:intergenic |
| CATAAACTCACCAAGAACAT+TGG | 0.555776 | 1_3:+37599862 | None:intergenic |
| AAACCAAAACTCACTCTACC+AGG | 0.561284 | 1_3:-37603544 | Msa0117240:intron |
| AGCTTCGAATTCCTCTTCAG+AGG | 0.566300 | 1_3:+37600111 | None:intergenic |
| GGTCACTGAAGCTGATATTG+AGG | 0.567799 | 1_3:-37600919 | Msa0117240:CDS |
| ATTCAAGGATATTATTGATG+AGG | 0.571989 | 1_3:-37600687 | Msa0117240:CDS |
| AACTAAACAAGAAATAAAGA+AGG | 0.573873 | 1_3:-37603415 | Msa0117240:CDS |
| TCTCTAATCTCAAAATATGG+TGG | 0.580345 | 1_3:-37600151 | Msa0117240:CDS |
| GACGAGATGAGAGGAAAGAT+CGG | 0.593053 | 1_3:-37600192 | Msa0117240:CDS |
| TTATTATTAGGTTCTTGGTG+TGG | 0.593713 | 1_3:-37603448 | Msa0117240:intron |
| TGTGCCCGAACCCTCTGAAG+AGG | 0.595257 | 1_3:-37600122 | Msa0117240:CDS |
| AGACTTTACAAGGAATGCAA+GGG | 0.606865 | 1_3:-37600846 | Msa0117240:CDS |
| TATCAAAACGACGAGATGAG+AGG | 0.612573 | 1_3:-37600201 | Msa0117240:CDS |
| TGACGGCGGGAAAAGAGTGA+TGG | 0.622725 | 1_3:-37603847 | None:intergenic |
| GAGTTTGAAGCAAACTATAG+GGG | 0.637373 | 1_3:-37600897 | Msa0117240:CDS |
| AAATGTTATCTCCATTCTCG+GGG | 0.645657 | 1_3:-37602040 | Msa0117240:CDS |
| GTGATGGCAGAAGCGAAAGG+CGG | 0.654334 | 1_3:-37603831 | Msa0117240:five_prime_UTR |
| CGCCAACTAGTCCTTTACGA+AGG | 0.677178 | 1_3:-37600352 | Msa0117240:CDS |
| AATATCAACAACAACAACGA+CGG | 0.683772 | 1_3:-37603582 | Msa0117240:CDS |
| CCTGAACTACATCTCCTGCA+AGG | 0.687635 | 1_3:+37601067 | None:intergenic |
| AGAGTGATGGCAGAAGCGAA+AGG | 0.697275 | 1_3:-37603834 | Msa0117240:five_prime_UTR |
| TACTCATTCTGCCATCATGG+AGG | 0.707421 | 1_3:-37599809 | Msa0117240:three_prime_UTR |
| AAATTGGTAAAAGATAACAC+AGG | 0.769111 | 1_3:+37599891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTTTATCAAATTATTAT+TGG | - | chr1_3:37600501-37600520 | Msa0117240:intron | 10.0% |
| !!! | ATTTTTTTTTTTTGAAAACT+CGG | - | chr1_3:37600644-37600663 | Msa0117240:intron | 10.0% |
| !! | TTAAATTAATAACAAGGATT+GGG | + | chr1_3:37599719-37599738 | None:intergenic | 15.0% |
| !! | TTTAAATTAATAACAAGGAT+TGG | + | chr1_3:37599720-37599739 | None:intergenic | 15.0% |
| !! | TATGTGAATGATTTATTATT+AGG | - | chr1_3:37600054-37600073 | Msa0117240:exon | 15.0% |
| !! | AAAAAAAAAATAACCCATTT+GGG | + | chr1_3:37600852-37600871 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATAACCCATT+TGG | + | chr1_3:37600853-37600872 | None:intergenic | 15.0% |
| !!! | TTTCGTTTATTTTTTGTTAA+GGG | - | chr1_3:37601292-37601311 | Msa0117240:intron | 15.0% |
| !! | TTAATAAAGTCATTATACAA+TGG | + | chr1_3:37601625-37601644 | None:intergenic | 15.0% |
| !! | AGAAGAAAAGAAAAGAAAAT+GGG | - | chr1_3:37599842-37599861 | Msa0117240:three_prime_UTR | 20.0% |
| !! | ATGATTTATTATTAGGTTCT+TGG | - | chr1_3:37600061-37600080 | Msa0117240:CDS | 20.0% |
| !! | AACTAAACAAGAAATAAAGA+AGG | - | chr1_3:37600099-37600118 | Msa0117240:CDS | 20.0% |
| !! | AAAAAAAAATAACCCATTTG+GGG | + | chr1_3:37600851-37600870 | None:intergenic | 20.0% |
| !!! | GTGTTTCATTTTAATATTGT+GGG | + | chr1_3:37600909-37600928 | None:intergenic | 20.0% |
| !!! | AGTGTTTCATTTTAATATTG+TGG | + | chr1_3:37600910-37600929 | None:intergenic | 20.0% |
| !! | CAATTAACATCAAAATACTA+CGG | + | chr1_3:37601151-37601170 | None:intergenic | 20.0% |
| !!! | GTTTCGTTTATTTTTTGTTA+AGG | - | chr1_3:37601291-37601310 | Msa0117240:intron | 20.0% |
| !!! | TTTTGATTGGTAATATTTGA+AGG | + | chr1_3:37601571-37601590 | None:intergenic | 20.0% |
| !!! | TATACAATGGTCTTTTTTTA+GGG | + | chr1_3:37601612-37601631 | None:intergenic | 20.0% |
| !!! | TTATACAATGGTCTTTTTTT+AGG | + | chr1_3:37601613-37601632 | None:intergenic | 20.0% |
| !! | ATTTATTTATATCAAAGGCA+AGG | - | chr1_3:37602004-37602023 | Msa0117240:CDS | 20.0% |
| !! | TGATTTAATTAGACTTTACA+AGG | - | chr1_3:37602658-37602677 | Msa0117240:intron | 20.0% |
| !! | TATTCTGCATATTAATAGAT+AGG | - | chr1_3:37603021-37603040 | Msa0117240:intron | 20.0% |
| !!! | AATATTTCACTTTTGTTTGA+TGG | - | chr1_3:37603047-37603066 | Msa0117240:intron | 20.0% |
| ! | CAGAAGAAAAGAAAAGAAAA+TGG | - | chr1_3:37599841-37599860 | Msa0117240:three_prime_UTR | 25.0% |
| ! | AATACAAAAAATTGCAACTG+AGG | + | chr1_3:37600388-37600407 | None:intergenic | 25.0% |
| !!! | TCAGTTGCAATTTTTTGTAT+TGG | - | chr1_3:37600387-37600406 | Msa0117240:CDS | 25.0% |
| ! | AAAATGTCATATTCTTGTAC+TGG | + | chr1_3:37600618-37600637 | None:intergenic | 25.0% |
| ! | TATGAGTAAGTACACATTAT+GGG | - | chr1_3:37600953-37600972 | Msa0117240:intron | 25.0% |
| ! | ATGTTAATTGTAACACCTTA+TGG | - | chr1_3:37601161-37601180 | Msa0117240:intron | 25.0% |
| ! | TATCAGTGAAAATAACCATA+AGG | + | chr1_3:37601179-37601198 | None:intergenic | 25.0% |
| !!! | CATTATACAATGGTTTTGAT+TGG | + | chr1_3:37601584-37601603 | None:intergenic | 25.0% |
| ! | ATGATCAAATATTGAAGCTT+GGG | - | chr1_3:37601727-37601746 | Msa0117240:intron | 25.0% |
| ! | TAGAAAGTAGTGTATGTTAT+TGG | - | chr1_3:37602048-37602067 | Msa0117240:CDS | 25.0% |
| !!! | ATTGCTTTTGTTAGTTTTTC+TGG | - | chr1_3:37602144-37602163 | Msa0117240:intron | 25.0% |
| ! | CTAAGAATAGAAGAAAATGT+TGG | - | chr1_3:37602171-37602190 | Msa0117240:intron | 25.0% |
| !! | ACTTTGTAATTTGTGCTAAT+AGG | - | chr1_3:37602574-37602593 | Msa0117240:intron | 25.0% |
| !! | ATTTTGTTCAATGCTATGTT+CGG | - | chr1_3:37602782-37602801 | Msa0117240:intron | 25.0% |
| ! | CATCAATAATATCCTTGAAT+CGG | + | chr1_3:37602827-37602846 | None:intergenic | 25.0% |
| ! | ATTCAAGGATATTATTGATG+AGG | - | chr1_3:37602827-37602846 | Msa0117240:intron | 25.0% |
| !!! | AGAATATTTCTAGCTTTTGT+TGG | - | chr1_3:37602865-37602884 | Msa0117240:intron | 25.0% |
| ! | AAGAAACAGACTATACAAAA+AGG | + | chr1_3:37603491-37603510 | None:intergenic | 25.0% |
| ! | AAATTGGTAAAAGATAACAC+AGG | + | chr1_3:37603626-37603645 | None:intergenic | 25.0% |
| !!! | ACTATGACTCTTTGTTTTAA+TGG | - | chr1_3:37603792-37603811 | Msa0117240:five_prime_UTR | 25.0% |
| !!! | CTATGACTCTTTGTTTTAAT+GGG | - | chr1_3:37603793-37603812 | Msa0117240:five_prime_UTR | 25.0% |
| CGAAGATGAAGAAATGAAAT+CGG | - | chr1_3:37599907-37599926 | Msa0117240:three_prime_UTR | 30.0% | |
| AATATCAACAACAACAACGA+CGG | - | chr1_3:37599932-37599951 | Msa0117240:three_prime_UTR | 30.0% | |
| ! | GAAATGTTAAAGTACTTACC+TGG | + | chr1_3:37599991-37600010 | None:intergenic | 30.0% |
| TTATTATTAGGTTCTTGGTG+TGG | - | chr1_3:37600066-37600085 | Msa0117240:CDS | 30.0% | |
| !! | GTTACTGTAATTTTAGGTCT+CGG | - | chr1_3:37600206-37600225 | Msa0117240:CDS | 30.0% |
| !! | TTACTGTAATTTTAGGTCTC+GGG | - | chr1_3:37600207-37600226 | Msa0117240:CDS | 30.0% |
| AATGTAGCTACATAACAAGT+TGG | + | chr1_3:37600472-37600491 | None:intergenic | 30.0% | |
| ! | TTTAGTGTCTCTGTCAATTT+TGG | - | chr1_3:37600531-37600550 | Msa0117240:intron | 30.0% |
| !! | AATTTTGGTACCTGTTTGTT+AGG | - | chr1_3:37600546-37600565 | Msa0117240:intron | 30.0% |
| TAACTGTACCTATGTAACAT+AGG | + | chr1_3:37600572-37600591 | None:intergenic | 30.0% | |
| ATGTTACATAGGTACAGTTA+CGG | - | chr1_3:37600572-37600591 | Msa0117240:intron | 30.0% | |
| AATATTGTGGGTGAAAATTG+TGG | + | chr1_3:37600897-37600916 | None:intergenic | 30.0% | |
| AATGTGTACTTACTCATACT+GGG | + | chr1_3:37600951-37600970 | None:intergenic | 30.0% | |
| TAATGTGTACTTACTCATAC+TGG | + | chr1_3:37600952-37600971 | None:intergenic | 30.0% | |
| GTATGAGTAAGTACACATTA+TGG | - | chr1_3:37600952-37600971 | Msa0117240:intron | 30.0% | |
| ! | ATTTTGCAATTGCTGAAACT+TGG | + | chr1_3:37601458-37601477 | None:intergenic | 30.0% |
| CAAAATGTTATCTCCATTCT+CGG | - | chr1_3:37601472-37601491 | Msa0117240:intron | 30.0% | |
| AAAATGTTATCTCCATTCTC+GGG | - | chr1_3:37601473-37601492 | Msa0117240:intron | 30.0% | |
| TAGGGAAAGTCATTATACAA+TGG | + | chr1_3:37601594-37601613 | None:intergenic | 30.0% | |
| GATGATCAAATATTGAAGCT+TGG | - | chr1_3:37601726-37601745 | Msa0117240:intron | 30.0% | |
| TGATCAAATATTGAAGCTTG+GGG | - | chr1_3:37601728-37601747 | Msa0117240:intron | 30.0% | |
| GTGTTAAAATATTAAGTCCC+TGG | + | chr1_3:37601877-37601896 | None:intergenic | 30.0% | |
| CTAGTCATGACAATTAAAAC+TGG | - | chr1_3:37601937-37601956 | Msa0117240:intron | 30.0% | |
| ATTTATATCAAAGGCAAGGT+AGG | - | chr1_3:37602008-37602027 | Msa0117240:CDS | 30.0% | |
| TTTATATCAAAGGCAAGGTA+GGG | - | chr1_3:37602009-37602028 | Msa0117240:CDS | 30.0% | |
| AACTAACAAAAGCAATACCA+TGG | + | chr1_3:37602140-37602159 | None:intergenic | 30.0% | |
| ! | ATGTTTAGATCTTTTTGCTC+TGG | - | chr1_3:37602281-37602300 | Msa0117240:intron | 30.0% |
| ! | GAACGAAATATTGTCATTTC+AGG | - | chr1_3:37602355-37602374 | Msa0117240:intron | 30.0% |
| !! | CGTATTTATTTCTGAAAACC+AGG | - | chr1_3:37602423-37602442 | Msa0117240:intron | 30.0% |
| TTTCAGAACATTGTACAAGA+AGG | - | chr1_3:37602483-37602502 | Msa0117240:intron | 30.0% | |
| GGGAATATCAAATTCAAAAC+TGG | + | chr1_3:37602752-37602771 | None:intergenic | 30.0% | |
| TGAACAAAATAACCTGCAAA+GGG | + | chr1_3:37602772-37602791 | None:intergenic | 30.0% | |
| TTGAACAAAATAACCTGCAA+AGG | + | chr1_3:37602773-37602792 | None:intergenic | 30.0% | |
| ! | CTTCCATTTTCTTTTGAACT+TGG | + | chr1_3:37602976-37602995 | None:intergenic | 30.0% |
| ! | AAAAGAAAGCGTACAAGAAA+TGG | - | chr1_3:37603114-37603133 | Msa0117240:intron | 30.0% |
| ! | AAAGAAAGCGTACAAGAAAT+GGG | - | chr1_3:37603115-37603134 | Msa0117240:intron | 30.0% |
| TAAGTTTATCAAGCAGAGTT+TGG | - | chr1_3:37603194-37603213 | Msa0117240:intron | 30.0% | |
| TGTTATTGGCACTTTAATGT+AGG | - | chr1_3:37603220-37603239 | Msa0117240:intron | 30.0% | |
| ! | ATAGCATACAGATCTGTTTT+TGG | + | chr1_3:37603291-37603310 | None:intergenic | 30.0% |
| TCGTCTCTAATCTCAAAATA+TGG | - | chr1_3:37603360-37603379 | Msa0117240:intron | 30.0% | |
| TCTCTAATCTCAAAATATGG+TGG | - | chr1_3:37603363-37603382 | Msa0117240:intron | 30.0% | |
| ! | TGTATAGTCTGTTTCTTTCA+TGG | - | chr1_3:37603494-37603513 | Msa0117240:intron | 30.0% |
| ! | GGAATTCTCAACTCTTTTTA+AGG | - | chr1_3:37603543-37603562 | Msa0117240:intron | 30.0% |
| ! | CTATTTTCGTTTACAAGATG+AGG | - | chr1_3:37603579-37603598 | Msa0117240:CDS | 30.0% |
| ! | AACACAGGCTTCAAATTTTT+AGG | + | chr1_3:37603611-37603630 | None:intergenic | 30.0% |
| AGAACATTGGCAACTTAAAT+TGG | + | chr1_3:37603642-37603661 | None:intergenic | 30.0% | |
| !! | ATTTAAGTTGCCAATGTTCT+TGG | - | chr1_3:37603642-37603661 | Msa0117240:CDS | 30.0% |
| AGAGTAAGAAGAAGAGAAGT+AGG | - | chr1_3:37599867-37599886 | Msa0117240:three_prime_UTR | 35.0% | |
| GAGTAAGAAGAAGAGAAGTA+GGG | - | chr1_3:37599868-37599887 | Msa0117240:three_prime_UTR | 35.0% | |
| CATTTCTTCATCTTCGTTGT+CGG | + | chr1_3:37599903-37599922 | None:intergenic | 35.0% | |
| !!! | GAGTGAGTTTTGGTTTTGAT+CGG | + | chr1_3:37599966-37599985 | None:intergenic | 35.0% |
| ! | AAAGAAGGCGTATCACAAAT+TGG | - | chr1_3:37600114-37600133 | Msa0117240:CDS | 35.0% |
| !! | CGCTGTGTTACTGTAATTTT+AGG | - | chr1_3:37600200-37600219 | Msa0117240:CDS | 35.0% |
| !!! | CGATTAGTTGGTTTTTGACT+CGG | - | chr1_3:37600324-37600343 | Msa0117240:intron | 35.0% |
| !! | CTACATAACAAGTTGGTCTA+GGG | + | chr1_3:37600465-37600484 | None:intergenic | 35.0% |
| TTGTTAGGCCTATGTTACAT+AGG | - | chr1_3:37600561-37600580 | Msa0117240:intron | 35.0% | |
| ! | AGATTAGTCGATTCTTGGAT+CGG | + | chr1_3:37600673-37600692 | None:intergenic | 35.0% |
| ! | AAAAATAACCCATTTGGGGT+TGG | + | chr1_3:37600847-37600866 | None:intergenic | 35.0% |
| CATCAAAATACTACGGTTAC+AGG | + | chr1_3:37601144-37601163 | None:intergenic | 35.0% | |
| TCGCAAACAAAGAAACACTT+TGG | + | chr1_3:37601265-37601284 | None:intergenic | 35.0% | |
| ! | TTGTTCCTTGTTTCATTTGC+AGG | - | chr1_3:37601423-37601442 | Msa0117240:intron | 35.0% |
| AAATGTTATCTCCATTCTCG+GGG | - | chr1_3:37601474-37601493 | Msa0117240:intron | 35.0% | |
| CTTGTTTCAACACTATGACA+CGG | + | chr1_3:37601706-37601725 | None:intergenic | 35.0% | |
| GATCAAATATTGAAGCTTGG+GGG | - | chr1_3:37601729-37601748 | Msa0117240:intron | 35.0% | |
| ATCAAATATTGAAGCTTGGG+GGG | - | chr1_3:37601730-37601749 | Msa0117240:intron | 35.0% | |
| !! | ACTAAGTTCTGAAGTTGTGT+TGG | - | chr1_3:37601791-37601810 | Msa0117240:intron | 35.0% |
| !! | CTGAAGTTGTGTTGGTATTT+TGG | - | chr1_3:37601799-37601818 | Msa0117240:intron | 35.0% |
| ! | GTGTATGTTATTGGTTGAGT+TGG | - | chr1_3:37602057-37602076 | Msa0117240:CDS | 35.0% |
| !! | ATGTTATTGGTTGAGTTGGT+TGG | - | chr1_3:37602061-37602080 | Msa0117240:CDS | 35.0% |
| !!! | AGGATATTTTAGCATTGTCC+TGG | - | chr1_3:37602375-37602394 | Msa0117240:intron | 35.0% |
| ! | AGGAGTTTGAAGCAAACTAT+AGG | - | chr1_3:37602615-37602634 | Msa0117240:intron | 35.0% |
| ! | GGAGTTTGAAGCAAACTATA+GGG | - | chr1_3:37602616-37602635 | Msa0117240:intron | 35.0% |
| ! | GAGTTTGAAGCAAACTATAG+GGG | - | chr1_3:37602617-37602636 | Msa0117240:intron | 35.0% |
| TAGACTTTACAAGGAATGCA+AGG | - | chr1_3:37602667-37602686 | Msa0117240:intron | 35.0% | |
| AGACTTTACAAGGAATGCAA+GGG | - | chr1_3:37602668-37602687 | Msa0117240:intron | 35.0% | |
| AATGCAAGGGTAATATGAAC+AGG | - | chr1_3:37602681-37602700 | Msa0117240:intron | 35.0% | |
| !! | AGCATTTTGATGCGTAAAAC+CGG | - | chr1_3:37602710-37602729 | Msa0117240:intron | 35.0% |
| !! | GTAAAACCGGCTTTTTGTTA+GGG | - | chr1_3:37602723-37602742 | Msa0117240:intron | 35.0% |
| GAATTTGATATTCCCTTTGC+AGG | - | chr1_3:37602757-37602776 | Msa0117240:intron | 35.0% | |
| ! | TCTTTTATAGTAGTGACAGC+TGG | + | chr1_3:37602922-37602941 | None:intergenic | 35.0% |
| TCGCCAAGTTCAAAAGAAAA+TGG | - | chr1_3:37602970-37602989 | Msa0117240:intron | 35.0% | |
| !! | TTTAGTTCTCCTGCAGATAT+AGG | + | chr1_3:37603092-37603111 | None:intergenic | 35.0% |
| TATATCTGCAGGAGAACTAA+AGG | - | chr1_3:37603091-37603110 | Msa0117240:intron | 35.0% | |
| ! | TACTTTTGCTTCCTTCGTAA+AGG | + | chr1_3:37603176-37603195 | None:intergenic | 35.0% |
| AATCTTCTGCAGATCAAGTA+AGG | - | chr1_3:37603263-37603282 | Msa0117240:intron | 35.0% | |
| !!! | TAGGCTTTTTTGAGGATCTT+CGG | + | chr1_3:37603449-37603468 | None:intergenic | 35.0% |
| GACTATACAAAAAGGCAAGT+TGG | + | chr1_3:37603483-37603502 | None:intergenic | 35.0% | |
| GTCACTTCACTATTGTTAGT+TGG | - | chr1_3:37603522-37603541 | Msa0117240:intron | 35.0% | |
| !!! | CTCTTTTTAAGGCTGAACAT+CGG | - | chr1_3:37603554-37603573 | Msa0117240:CDS | 35.0% |
| !!! | TCTTTTTAAGGCTGAACATC+GGG | - | chr1_3:37603555-37603574 | Msa0117240:CDS | 35.0% |
| CATAAACTCACCAAGAACAT+TGG | + | chr1_3:37603655-37603674 | None:intergenic | 35.0% | |
| CAATGTTCTTGGTGAGTTTA+TGG | - | chr1_3:37603653-37603672 | Msa0117240:CDS | 35.0% | |
| AAATTAATGCACCTCCATGA+TGG | + | chr1_3:37603719-37603738 | None:intergenic | 35.0% | |
| TAGCTTCATTCAGACTCAAA+TGG | + | chr1_3:37603743-37603762 | None:intergenic | 35.0% | |
| ! | ATGTTGTGCGTTTGAGTTTA+TGG | + | chr1_3:37603766-37603785 | None:intergenic | 35.0% |
| !!! | GTTTTGGTTTTGATCGGAAC+TGG | + | chr1_3:37599960-37599979 | None:intergenic | 40.0% |
| AAACCAAAACTCACTCTACC+AGG | - | chr1_3:37599970-37599989 | Msa0117240:three_prime_UTR | 40.0% | |
| ! | TTACCTGGTAGAGTGAGTTT+TGG | + | chr1_3:37599976-37599995 | None:intergenic | 40.0% |
| CTTCATCCTGATAAGAATCC+TGG | - | chr1_3:37600145-37600164 | Msa0117240:CDS | 40.0% | |
| TCATCACCAGGATTCTTATC+AGG | + | chr1_3:37600154-37600173 | None:intergenic | 40.0% | |
| ! | TGATAAGAATCCTGGTGATG+AGG | - | chr1_3:37600153-37600172 | Msa0117240:CDS | 40.0% |
| CACAGAGATTGTTGGCAATT+GGG | + | chr1_3:37600242-37600261 | None:intergenic | 40.0% | |
| ACACAGAGATTGTTGGCAAT+TGG | + | chr1_3:37600243-37600262 | None:intergenic | 40.0% | |
| TTGCCAACAATCTCTGTGTT+CGG | - | chr1_3:37600244-37600263 | Msa0117240:intron | 40.0% | |
| !! | GCTACATAACAAGTTGGTCT+AGG | + | chr1_3:37600466-37600485 | None:intergenic | 40.0% |
| GTAACATAGGCCTAACAAAC+AGG | + | chr1_3:37600559-37600578 | None:intergenic | 40.0% | |
| TCCAAGAATCGACTAATCTG+AGG | - | chr1_3:37600674-37600693 | Msa0117240:intron | 40.0% | |
| CCAAGAATCGACTAATCTGA+GGG | - | chr1_3:37600675-37600694 | Msa0117240:CDS | 40.0% | |
| !! | ATTCCCTCTGGTGTCAATTT+TGG | + | chr1_3:37600770-37600789 | None:intergenic | 40.0% |
| AAGCATGGGTACTTGTGAAA+AGG | + | chr1_3:37600986-37601005 | None:intergenic | 40.0% | |
| !! | TGTCAGAACCTTTGAAGCAT+GGG | + | chr1_3:37601000-37601019 | None:intergenic | 40.0% |
| !! | TTGTCAGAACCTTTGAAGCA+TGG | + | chr1_3:37601001-37601020 | None:intergenic | 40.0% |
| ! | CTTCAAAGGTTCTGACAAGT+GGG | - | chr1_3:37601003-37601022 | Msa0117240:intron | 40.0% |
| !! | TTGGCCCTGATGTTTGTTTT+TGG | - | chr1_3:37601055-37601074 | Msa0117240:CDS | 40.0% |
| !! | TGGCCCTGATGTTTGTTTTT+GGG | - | chr1_3:37601056-37601075 | Msa0117240:CDS | 40.0% |
| TGCCTACATCTCTGAGTATA+GGG | + | chr1_3:37601222-37601241 | None:intergenic | 40.0% | |
| ATGCCTACATCTCTGAGTAT+AGG | + | chr1_3:37601223-37601242 | None:intergenic | 40.0% | |
| ACTTGACAGAGTTTGACAAG+GGG | + | chr1_3:37601344-37601363 | None:intergenic | 40.0% | |
| CACTTGACAGAGTTTGACAA+GGG | + | chr1_3:37601345-37601364 | None:intergenic | 40.0% | |
| ACACTTGACAGAGTTTGACA+AGG | + | chr1_3:37601346-37601365 | None:intergenic | 40.0% | |
| AGCTTCCTGCAAATGAAACA+AGG | + | chr1_3:37601431-37601450 | None:intergenic | 40.0% | |
| ! | TTTTTCTTCATCCCCGAGAA+TGG | + | chr1_3:37601488-37601507 | None:intergenic | 40.0% |
| CGAGCTCTTTATGATGAAAC+TGG | - | chr1_3:37601508-37601527 | Msa0117240:intron | 40.0% | |
| ! | CGTGTCATAGTGTTGAAACA+AGG | - | chr1_3:37601704-37601723 | Msa0117240:intron | 40.0% |
| !! | TTGAGTTGGTTGGTTGTGAA+AGG | - | chr1_3:37602071-37602090 | Msa0117240:intron | 40.0% |
| !! | TGAGTTGGTTGGTTGTGAAA+GGG | - | chr1_3:37602072-37602091 | Msa0117240:intron | 40.0% |
| TGCTCTGGTAACTGTAGTTA+AGG | - | chr1_3:37602296-37602315 | Msa0117240:intron | 40.0% | |
| !! | CGTAAAACCGGCTTTTTGTT+AGG | - | chr1_3:37602722-37602741 | Msa0117240:intron | 40.0% |
| TGGAATCCCTAACAAAAAGC+CGG | + | chr1_3:37602732-37602751 | None:intergenic | 40.0% | |
| ATTGATGAGGCTATAGCTTC+TGG | - | chr1_3:37602840-37602859 | Msa0117240:intron | 40.0% | |
| !! | GCTTGTTTTCCTATATCTGC+AGG | - | chr1_3:37603080-37603099 | Msa0117240:intron | 40.0% |
| ! | TTCCTTCGTAAAGGACTAGT+TGG | + | chr1_3:37603167-37603186 | None:intergenic | 40.0% |
| !! | GCAGAGTTTGGCTTTGTTAT+TGG | - | chr1_3:37603206-37603225 | Msa0117240:intron | 40.0% |
| TATCAAAACGACGAGATGAG+AGG | - | chr1_3:37603313-37603332 | Msa0117240:intron | 40.0% | |
| CGAAGCTACACAGAAAAAGA+TGG | - | chr1_3:37603419-37603438 | Msa0117240:CDS | 40.0% | |
| GAAGATCCTCAAAAAAGCCT+AGG | - | chr1_3:37603448-37603467 | Msa0117240:intron | 40.0% | |
| !!! | CTTTTTAAGGCTGAACATCG+GGG | - | chr1_3:37603556-37603575 | Msa0117240:CDS | 40.0% |
| TGTTACTCATTCTGCCATCA+TGG | - | chr1_3:37603702-37603721 | Msa0117240:five_prime_UTR | 40.0% | |
| TGAAGTTGCAAAGCCCTGTA+TGG | + | chr1_3:37600275-37600294 | None:intergenic | 45.0% | |
| TATTGGACGGTGCGATTAGT+TGG | - | chr1_3:37600312-37600331 | Msa0117240:intron | 45.0% | |
| ! | CCCTCAGATTAGTCGATTCT+TGG | + | chr1_3:37600678-37600697 | None:intergenic | 45.0% |
| !! | AGCTTGCTCTGGCTTTAAAC+GGG | + | chr1_3:37600729-37600748 | None:intergenic | 45.0% |
| !! | GAGCTTGCTCTGGCTTTAAA+CGG | + | chr1_3:37600730-37600749 | None:intergenic | 45.0% |
| AAGCCAGAGCAAGCTCTATA+TGG | - | chr1_3:37600734-37600753 | Msa0117240:CDS | 45.0% | |
| ! | AGTCCATATAGAGCTTGCTC+TGG | + | chr1_3:37600740-37600759 | None:intergenic | 45.0% |
| !! | CCTCTGGTGTCAATTTTGGT+GGG | + | chr1_3:37600766-37600785 | None:intergenic | 45.0% |
| CCACCAAAATTGACACCAGA+GGG | - | chr1_3:37600764-37600783 | Msa0117240:intron | 45.0% | |
| !! | TAATGGTTGGCTTGGGATCT+TGG | + | chr1_3:37600822-37600841 | None:intergenic | 45.0% |
| AAGATCCCAAGCCAACCATT+AGG | - | chr1_3:37600821-37600840 | Msa0117240:intron | 45.0% | |
| ACTCATACTGGGTACGAGTA+CGG | + | chr1_3:37600940-37600959 | None:intergenic | 45.0% | |
| CACAAGTACCCATGCTTCAA+AGG | - | chr1_3:37600989-37601008 | Msa0117240:intron | 45.0% | |
| ! | GCTTCAAAGGTTCTGACAAG+TGG | - | chr1_3:37601002-37601021 | Msa0117240:intron | 45.0% |
| !!! | GGCCCTGATGTTTGTTTTTG+GGG | - | chr1_3:37601057-37601076 | Msa0117240:CDS | 45.0% |
| !!! | GCCCTGATGTTTGTTTTTGG+GGG | - | chr1_3:37601058-37601077 | Msa0117240:CDS | 45.0% |
| GCCCCCAAAAACAAACATCA+GGG | + | chr1_3:37601062-37601081 | None:intergenic | 45.0% | |
| AAACCCTTGAACCGTACCAT+GGG | + | chr1_3:37601109-37601128 | None:intergenic | 45.0% | |
| AAAACCCTTGAACCGTACCA+TGG | + | chr1_3:37601110-37601129 | None:intergenic | 45.0% | |
| GTCCCTATACTCAGAGATGT+AGG | - | chr1_3:37601217-37601236 | Msa0117240:intron | 45.0% | |
| AGGCATACTTGTCCGCAATT+CGG | - | chr1_3:37601237-37601256 | Msa0117240:intron | 45.0% | |
| !! | AACACTTTGGTGCCGAATTG+CGG | + | chr1_3:37601252-37601271 | None:intergenic | 45.0% |
| AGTTTGACAAGGGGGCTATA+AGG | + | chr1_3:37601335-37601354 | None:intergenic | 45.0% | |
| CTTGACAGAGTTTGACAAGG+GGG | + | chr1_3:37601343-37601362 | None:intergenic | 45.0% | |
| AAAATGCAGCTCAAGTGGTG+TGG | + | chr1_3:37601379-37601398 | None:intergenic | 45.0% | |
| ! | ACCACTTGAGCTGCATTTTG+TGG | - | chr1_3:37601380-37601399 | Msa0117240:intron | 45.0% |
| ACCACAAAATGCAGCTCAAG+TGG | + | chr1_3:37601384-37601403 | None:intergenic | 45.0% | |
| TGAAAACAACGCAACAAGCC+AGG | - | chr1_3:37601856-37601875 | Msa0117240:intron | 45.0% | |
| GAAAACAACGCAACAAGCCA+GGG | - | chr1_3:37601857-37601876 | Msa0117240:intron | 45.0% | |
| TCAAAGGCAAGGTAGGGAAA+AGG | - | chr1_3:37602015-37602034 | Msa0117240:CDS | 45.0% | |
| GCCTTGTATACGCTTGTTCT+CGG | - | chr1_3:37602543-37602562 | Msa0117240:intron | 45.0% | |
| ACCGAGAACAAGCGTATACA+AGG | + | chr1_3:37602547-37602566 | None:intergenic | 45.0% | |
| GGTCACTGAAGCTGATATTG+AGG | - | chr1_3:37602595-37602614 | Msa0117240:intron | 45.0% | |
| !! | CTTCGTAAAGGACTAGTTGG+CGG | + | chr1_3:37603164-37603183 | None:intergenic | 45.0% |
| GACGAGATGAGAGGAAAGAT+CGG | - | chr1_3:37603322-37603341 | Msa0117240:intron | 45.0% | |
| AATTCCTCTTCAGAGGGTTC+GGG | + | chr1_3:37603399-37603418 | None:intergenic | 45.0% | |
| GAATTCCTCTTCAGAGGGTT+CGG | + | chr1_3:37603400-37603419 | None:intergenic | 45.0% | |
| GCTTCGAATTCCTCTTCAGA+GGG | + | chr1_3:37603405-37603424 | None:intergenic | 45.0% | |
| AGCTTCGAATTCCTCTTCAG+AGG | + | chr1_3:37603406-37603425 | None:intergenic | 45.0% | |
| !!! | CTTTCGCCTAGGCTTTTTTG+AGG | + | chr1_3:37603457-37603476 | None:intergenic | 45.0% |
| !! | CAAGTTGGTTACTTTCGCCT+AGG | + | chr1_3:37603468-37603487 | None:intergenic | 45.0% |
| TACTCATTCTGCCATCATGG+AGG | - | chr1_3:37603705-37603724 | Msa0117240:five_prime_UTR | 45.0% | |
| !! | TTAAATTTAAATTAATAACA+AGG | + | chr1_3:37599725-37599744 | None:intergenic | 5.0% |
| !! | TATTTATTTATTTATATCAA+AGG | - | chr1_3:37601999-37602018 | Msa0117240:CDS | 5.0% |
| AGAGTGATGGCAGAAGCGAA+AGG | - | chr1_3:37599680-37599699 | Msa0117240:three_prime_UTR | 50.0% | |
| TGGCCGAACACAGAGATTGT+TGG | + | chr1_3:37600250-37600269 | None:intergenic | 50.0% | |
| TTGCAAAGCCCTGTATGGAC+TGG | + | chr1_3:37600270-37600289 | None:intergenic | 50.0% | |
| CTAATCGCACCGTCCAATAG+CGG | + | chr1_3:37600311-37600330 | None:intergenic | 50.0% | |
| !! | GCTTGCTCTGGCTTTAAACG+GGG | + | chr1_3:37600728-37600747 | None:intergenic | 50.0% |
| CCCACCAAAATTGACACCAG+AGG | - | chr1_3:37600763-37600782 | Msa0117240:intron | 50.0% | |
| !! | CCCTCTGGTGTCAATTTTGG+TGG | + | chr1_3:37600767-37600786 | None:intergenic | 50.0% |
| GGAATCGAACCTGAGACCTT+TGG | - | chr1_3:37600785-37600804 | Msa0117240:intron | 50.0% | |
| ATCGAACCTGAGACCTTTGG+AGG | - | chr1_3:37600788-37600807 | Msa0117240:intron | 50.0% | |
| TTTGCTCCTCCAAAGGTCTC+AGG | + | chr1_3:37600797-37600816 | None:intergenic | 50.0% | |
| ! | CTTGGAGTTTGCTCCTCCAA+AGG | + | chr1_3:37600804-37600823 | None:intergenic | 50.0% |
| !! | GTTGGCCTAATGGTTGGCTT+GGG | + | chr1_3:37600829-37600848 | None:intergenic | 50.0% |
| !! | TTTGGGGTTGGCCTAATGGT+TGG | + | chr1_3:37600835-37600854 | None:intergenic | 50.0% |
| ACCATTAGGCCAACCCCAAA+TGG | - | chr1_3:37600835-37600854 | Msa0117240:CDS | 50.0% | |
| CCATTAGGCCAACCCCAAAT+GGG | - | chr1_3:37600836-37600855 | Msa0117240:CDS | 50.0% | |
| ! | AAAGGTTCTGACAAGTGGGC+AGG | - | chr1_3:37601007-37601026 | Msa0117240:intron | 50.0% |
| ! | AAGGTTCTGACAAGTGGGCA+GGG | - | chr1_3:37601008-37601027 | Msa0117240:intron | 50.0% |
| CGCCCCCAAAAACAAACATC+AGG | + | chr1_3:37601063-37601082 | None:intergenic | 50.0% | |
| !!! | TGTTTGTTTTTGGGGGCGAG+TGG | - | chr1_3:37601065-37601084 | Msa0117240:CDS | 50.0% |
| !!! | GTTTGTTTTTGGGGGCGAGT+GGG | - | chr1_3:37601066-37601085 | Msa0117240:CDS | 50.0% |
| !!! | TTTGTTTTTGGGGGCGAGTG+GGG | - | chr1_3:37601067-37601086 | Msa0117240:CDS | 50.0% |
| AACCCTTGAACCGTACCATG+GGG | + | chr1_3:37601108-37601127 | None:intergenic | 50.0% | |
| CATAGGATCAGCACCTACCA+AGG | + | chr1_3:37602098-37602117 | None:intergenic | 50.0% | |
| !! | CTTGGTAGGTGCTGATCCTA+TGG | - | chr1_3:37602096-37602115 | Msa0117240:intron | 50.0% |
| !! | GTAGGTGCTGATCCTATGGA+GGG | - | chr1_3:37602100-37602119 | Msa0117240:intron | 50.0% |
| CCACAAAGATGACCCTCCAT+AGG | + | chr1_3:37602115-37602134 | None:intergenic | 50.0% | |
| CCTATGGAGGGTCATCTTTG+TGG | - | chr1_3:37602112-37602131 | Msa0117240:intron | 50.0% | |
| GGGTCATCTTTGTGGTTCCA+TGG | - | chr1_3:37602120-37602139 | Msa0117240:intron | 50.0% | |
| CTGAGCTGTCAACAATGTCC+AGG | + | chr1_3:37602396-37602415 | None:intergenic | 50.0% | |
| TCTGAAAACCAGGACCTTGC+AGG | - | chr1_3:37602433-37602452 | Msa0117240:intron | 50.0% | |
| CCTGAACTACATCTCCTGCA+AGG | + | chr1_3:37602450-37602469 | None:intergenic | 50.0% | |
| CCTTGCAGGAGATGTAGTTC+AGG | - | chr1_3:37602447-37602466 | Msa0117240:intron | 50.0% | |
| AATCGGTGCGAGTCGAGTTT+AGG | + | chr1_3:37602810-37602829 | None:intergenic | 50.0% | |
| !! | TAAAGGACTAGTTGGCGGCT+TGG | + | chr1_3:37603159-37603178 | None:intergenic | 50.0% |
| CGCCAACTAGTCCTTTACGA+AGG | - | chr1_3:37603162-37603181 | Msa0117240:intron | 50.0% | |
| GTGATGGCAGAAGCGAAAGG+CGG | - | chr1_3:37599683-37599702 | Msa0117240:three_prime_UTR | 55.0% | |
| TGATGGCAGAAGCGAAAGGC+GGG | - | chr1_3:37599684-37599703 | Msa0117240:three_prime_UTR | 55.0% | |
| GAGAGACTGACCTCATCACC+AGG | + | chr1_3:37600166-37600185 | None:intergenic | 55.0% | |
| TGTGTTCGGCCAGTCCATAC+AGG | - | chr1_3:37600258-37600277 | Msa0117240:intron | 55.0% | |
| GTGTTCGGCCAGTCCATACA+GGG | - | chr1_3:37600259-37600278 | Msa0117240:intron | 55.0% | |
| GTCTCAGGTTCGATTCCCTC+TGG | + | chr1_3:37600782-37600801 | None:intergenic | 55.0% | |
| !! | GGTTGGCCTAATGGTTGGCT+TGG | + | chr1_3:37600830-37600849 | None:intergenic | 55.0% |
| !! | CCCATTTGGGGTTGGCCTAA+TGG | + | chr1_3:37600839-37600858 | None:intergenic | 55.0% |
| TGAGCAGAGTGAGTTGCGCT+TGG | - | chr1_3:37601036-37601055 | Msa0117240:CDS | 55.0% | |
| ACCCTTGAACCGTACCATGG+GGG | + | chr1_3:37601107-37601126 | None:intergenic | 55.0% | |
| ! | GGTTGGTTGTGAAAGGGCCT+TGG | - | chr1_3:37602078-37602097 | Msa0117240:intron | 55.0% |
| GGTTGTGAAAGGGCCTTGGT+AGG | - | chr1_3:37602082-37602101 | Msa0117240:intron | 55.0% | |
| !! | GGTAGGTGCTGATCCTATGG+AGG | - | chr1_3:37602099-37602118 | Msa0117240:intron | 55.0% |
| CTACATCTCCTGCAAGGTCC+TGG | + | chr1_3:37602444-37602463 | None:intergenic | 55.0% | |
| !! | ACTCGACTCGCACCGATTCA+AGG | - | chr1_3:37602812-37602831 | Msa0117240:intron | 55.0% |
| GGGACAAAGCCCCCATGGTA+CGG | - | chr1_3:37601095-37601114 | Msa0117240:intron | 60.0% | |
| AGCCCCCATGGTACGGTTCA+AGG | - | chr1_3:37601102-37601121 | Msa0117240:intron | 60.0% | |
| GCCCCCATGGTACGGTTCAA+GGG | - | chr1_3:37601103-37601122 | Msa0117240:intron | 60.0% | |
| CTTCAGAGGGTTCGGGCACA+TGG | + | chr1_3:37603392-37603411 | None:intergenic | 60.0% | |
| ! | TGTGCCCGAACCCTCTGAAG+AGG | - | chr1_3:37603392-37603411 | Msa0117240:CDS | 60.0% |
| ACCGTCCAATAGCGGCTGCG+GGG | + | chr1_3:37600303-37600322 | None:intergenic | 65.0% | |
| CACCGTCCAATAGCGGCTGC+GGG | + | chr1_3:37600304-37600323 | None:intergenic | 65.0% | |
| GCACCGTCCAATAGCGGCTG+CGG | + | chr1_3:37600305-37600324 | None:intergenic | 65.0% | |
| CCAATCCCACCGCCCACTTG+CGG | - | chr1_3:37600699-37600718 | Msa0117240:CDS | 65.0% | |
| CAATCCCACCGCCCACTTGC+GGG | - | chr1_3:37600700-37600719 | Msa0117240:CDS | 65.0% | |
| AATCCCACCGCCCACTTGCG+GGG | - | chr1_3:37600701-37600720 | Msa0117240:CDS | 65.0% | |
| TAAACGGGGCCCCCGCAAGT+GGG | + | chr1_3:37600714-37600733 | None:intergenic | 65.0% | |
| TTAAACGGGGCCCCCGCAAG+TGG | + | chr1_3:37600715-37600734 | None:intergenic | 65.0% | |
| !! | TTTTGGGGGCGAGTGGGGTG+TGG | - | chr1_3:37601072-37601091 | Msa0117240:CDS | 65.0% |
| TTTGGGGGCGAGTGGGGTGT+GGG | - | chr1_3:37601073-37601092 | Msa0117240:intron | 65.0% | |
| TGTGGGGGACAAAGCCCCCA+TGG | - | chr1_3:37601090-37601109 | Msa0117240:intron | 65.0% | |
| GTTGCCCCCGCAGCCGCTAT+TGG | - | chr1_3:37600295-37600314 | Msa0117240:intron | 70.0% | |
| CCGTCCAATAGCGGCTGCGG+GGG | + | chr1_3:37600302-37600321 | None:intergenic | 70.0% | |
| CCCCCGCAGCCGCTATTGGA+CGG | - | chr1_3:37600299-37600318 | Msa0117240:intron | 70.0% | |
| CCGCAAGTGGGCGGTGGGAT+TGG | + | chr1_3:37600702-37600721 | None:intergenic | 70.0% | |
| ATCCCACCGCCCACTTGCGG+GGG | - | chr1_3:37600702-37600721 | Msa0117240:CDS | 70.0% | |
| TTGGGGGCGAGTGGGGTGTG+GGG | - | chr1_3:37601074-37601093 | Msa0117240:intron | 70.0% | |
| TGGGGGCGAGTGGGGTGTGG+GGG | - | chr1_3:37601075-37601094 | Msa0117240:intron | 75.0% | |
| ! | GGCCCCCGCAAGTGGGCGGT+GGG | + | chr1_3:37600707-37600726 | None:intergenic | 80.0% |
| ! | ACGGGGCCCCCGCAAGTGGG+CGG | + | chr1_3:37600711-37600730 | None:intergenic | 80.0% |
| ! | GGGCCCCCGCAAGTGGGCGG+TGG | + | chr1_3:37600708-37600727 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 37599674 | 37603862 | 37599674 | ID=Msa0117240;Name=Msa0117240 |
| chr1_3 | mRNA | 37599674 | 37603862 | 37599674 | ID=Msa0117240-mRNA-1;Parent=Msa0117240;Name=Msa0117240-mRNA-1;_AED=0.12;_eAED=0.12;_QI=186|0.85|0.75|1|1|1|8|383|288 |
| chr1_3 | exon | 37599674 | 37600261 | 37599674 | ID=Msa0117240-mRNA-1:exon:11925;Parent=Msa0117240-mRNA-1 |
| chr1_3 | exon | 37600344 | 37600434 | 37600344 | ID=Msa0117240-mRNA-1:exon:11924;Parent=Msa0117240-mRNA-1 |
| chr1_3 | exon | 37600675 | 37600757 | 37600675 | ID=Msa0117240-mRNA-1:exon:11923;Parent=Msa0117240-mRNA-1 |
| chr1_3 | exon | 37600834 | 37600940 | 37600834 | ID=Msa0117240-mRNA-1:exon:11922;Parent=Msa0117240-mRNA-1 |
| chr1_3 | exon | 37601032 | 37601091 | 37601032 | ID=Msa0117240-mRNA-1:exon:11921;Parent=Msa0117240-mRNA-1 |
| chr1_3 | exon | 37601990 | 37602087 | 37601990 | ID=Msa0117240-mRNA-1:exon:11920;Parent=Msa0117240-mRNA-1 |
| chr1_3 | exon | 37603370 | 37603460 | 37603370 | ID=Msa0117240-mRNA-1:exon:11919;Parent=Msa0117240-mRNA-1 |
| chr1_3 | exon | 37603545 | 37603862 | 37603545 | ID=Msa0117240-mRNA-1:exon:11918;Parent=Msa0117240-mRNA-1 |
| chr1_3 | five_prime_UTR | 37603677 | 37603862 | 37603677 | ID=Msa0117240-mRNA-1:five_prime_utr;Parent=Msa0117240-mRNA-1 |
| chr1_3 | CDS | 37603545 | 37603676 | 37603545 | ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1 |
| chr1_3 | CDS | 37603370 | 37603460 | 37603370 | ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1 |
| chr1_3 | CDS | 37601990 | 37602087 | 37601990 | ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1 |
| chr1_3 | CDS | 37601032 | 37601091 | 37601032 | ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1 |
| chr1_3 | CDS | 37600834 | 37600940 | 37600834 | ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1 |
| chr1_3 | CDS | 37600675 | 37600757 | 37600675 | ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1 |
| chr1_3 | CDS | 37600344 | 37600434 | 37600344 | ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1 |
| chr1_3 | CDS | 37600057 | 37600261 | 37600057 | ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1 |
| chr1_3 | three_prime_UTR | 37599674 | 37600056 | 37599674 | ID=Msa0117240-mRNA-1:three_prime_utr;Parent=Msa0117240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
