AlfalfaGEDB | Msa0117240

M. sativa cultivar zhongmu-4 / Msa0117240

KEGG: K07238|K09529
GO: -
PFAM: PF00226.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117240	XP_013467498.1	96.246	293	2	3	1	288	1	289	0.0	562

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117240	sp\|Q9FL54\|DNAJ6_ARATH	62.838	296	90	6	1	288	1	284	3.30e-114	333

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117240	A0A072VTU1	96.246	293	2	3	1	288	1	289	0.0	562

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0117240	0.810117	1.351598e-50	-8.615850e-47
Msa0043980	Msa0117240	0.802439	5.607874e-49	-8.615850e-47
Msa0054480	Msa0117240	0.821185	4.617433e-53	-8.615850e-47
Msa0070180	Msa0117240	0.847962	8.297665e-60	-8.615850e-47
Msa0083280	Msa0117240	0.804931	1.704690e-49	-8.615850e-47
Msa0084380	Msa0117240	0.826232	3.037724e-54	-8.615850e-47
Msa0090360	Msa0117240	0.807914	4.004678e-50	-8.615850e-47
Msa0117240	Msa0137840	0.800924	1.146873e-48	-8.615850e-47
Msa0117240	Msa0157100	0.805323	1.410933e-49	-8.615850e-47
Msa0117240	Msa0157290	0.809576	1.767315e-50	-8.615850e-47

Showing 1 to 10 of 134 entries

Previous1 2 3 4 5…14Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117240	MtrunA17_Chr1g0173931	96.246	293	2	3	1	288	1	289	0.0	562
Msa0117240	MtrunA17_Chr7g0258061	77.075	253	53	2	29	277	10	261	1.30e-141	399
Msa0117240	MtrunA17_Chr7g0242951	55.556	63	25	1	43	102	29	91	1.34e-13	70.9
Msa0117240	MtrunA17_Chr7g0271891	49.231	65	25	2	43	99	18	82	3.73e-13	66.2
Msa0117240	MtrunA17_Chr2g0282741	47.692	65	29	1	43	102	6	70	8.86e-13	67.8
Msa0117240	MtrunA17_Chr4g0040501	49.231	65	28	1	43	102	6	70	1.07e-12	67.4
Msa0117240	MtrunA17_Chr2g0282761	41.573	89	41	3	43	123	6	91	3.78e-12	65.9
Msa0117240	MtrunA17_Chr3g0138471	44.615	65	31	1	43	102	6	70	5.90e-12	65.1
Msa0117240	MtrunA17_Chr3g0123861	50.794	63	28	1	43	102	84	146	2.15e-11	63.9
Msa0117240	MtrunA17_Chr7g0269841	48.485	66	30	1	41	102	26	91	2.65e-11	63.2

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117240	AT3G12170.1	69.048	252	71	2	30	277	3	251	5.99e-127	362
Msa0117240	AT3G12170.2	69.048	252	71	2	30	277	39	287	5.14e-126	361
Msa0117240	AT5G06910.1	62.838	296	90	6	1	288	1	284	3.35e-115	333
Msa0117240	AT5G01390.3	46.970	66	30	1	42	102	5	70	1.05e-12	66.6
Msa0117240	AT5G01390.4	46.970	66	30	1	42	102	5	70	1.08e-12	66.6
Msa0117240	AT1G56300.1	44.928	69	30	2	39	99	11	79	1.34e-12	64.7
Msa0117240	AT1G56300.2	44.000	75	33	3	39	105	11	84	1.41e-12	63.9
Msa0117240	AT5G01390.2	46.970	66	30	1	42	102	5	70	2.10e-12	66.2
Msa0117240	AT5G01390.1	46.970	66	30	1	42	102	5	70	2.81e-12	66.6
Msa0117240	AT4G28480.2	47.692	65	29	1	43	102	6	70	4.05e-12	65.9

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Find 76 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGCGTACAAGAAA+TGG	0.336249	1_3:-37600400	Msa0117240:CDS
AAAATGTTATCTCCATTCTC+GGG	0.461779	1_3:-37602041	Msa0117240:CDS
AAACCAAAACTCACTCTACC+AGG	0.561284	1_3:-37603544	Msa0117240:intron
AAAGAAAGCGTACAAGAAAT+GGG	0.493039	1_3:-37600399	Msa0117240:CDS
AAAGAAGGCGTATCACAAAT+TGG	0.377076	1_3:-37603400	Msa0117240:CDS
AAATGTTATCTCCATTCTCG+GGG	0.645657	1_3:-37602040	Msa0117240:CDS
AAATTAATGCACCTCCATGA+TGG	0.553955	1_3:+37599798	None:intergenic
AAATTGGTAAAAGATAACAC+AGG	0.769111	1_3:+37599891	None:intergenic
AACTAAACAAGAAATAAAGA+AGG	0.573873	1_3:-37603415	Msa0117240:CDS
AAGAAACAGACTATACAAAA+AGG	0.386723	1_3:+37600026	None:intergenic

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CGAAGATGAAGAAATGAAAT+CGG	-	chr1_3:37599907-37599926	Msa0117240:three_prime_UTR	30.0%
AATATCAACAACAACAACGA+CGG	-	chr1_3:37599932-37599951	Msa0117240:three_prime_UTR	30.0%
TTATTATTAGGTTCTTGGTG+TGG	-	chr1_3:37600066-37600085	Msa0117240:CDS	30.0%
AATGTAGCTACATAACAAGT+TGG	+	chr1_3:37600472-37600491	None:intergenic	30.0%
TAACTGTACCTATGTAACAT+AGG	+	chr1_3:37600572-37600591	None:intergenic	30.0%
ATGTTACATAGGTACAGTTA+CGG	-	chr1_3:37600572-37600591	Msa0117240:intron	30.0%
AATATTGTGGGTGAAAATTG+TGG	+	chr1_3:37600897-37600916	None:intergenic	30.0%
AATGTGTACTTACTCATACT+GGG	+	chr1_3:37600951-37600970	None:intergenic	30.0%
TAATGTGTACTTACTCATAC+TGG	+	chr1_3:37600952-37600971	None:intergenic	30.0%
GTATGAGTAAGTACACATTA+TGG	-	chr1_3:37600952-37600971	Msa0117240:intron	30.0%

Showing 1 to 10 of 303 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	37599674	37603862	37599674	ID=Msa0117240;Name=Msa0117240
chr1_3	mRNA	37599674	37603862	37599674	ID=Msa0117240-mRNA-1;Parent=Msa0117240;Name=Msa0117240-mRNA-1;_AED=0.12;_eAED=0.12;_QI=186\|0.85\|0.75\|1\|1\|1\|8\|383\|288
chr1_3	exon	37599674	37600261	37599674	ID=Msa0117240-mRNA-1:exon:11925;Parent=Msa0117240-mRNA-1
chr1_3	exon	37600344	37600434	37600344	ID=Msa0117240-mRNA-1:exon:11924;Parent=Msa0117240-mRNA-1
chr1_3	exon	37600675	37600757	37600675	ID=Msa0117240-mRNA-1:exon:11923;Parent=Msa0117240-mRNA-1
chr1_3	exon	37600834	37600940	37600834	ID=Msa0117240-mRNA-1:exon:11922;Parent=Msa0117240-mRNA-1
chr1_3	exon	37601032	37601091	37601032	ID=Msa0117240-mRNA-1:exon:11921;Parent=Msa0117240-mRNA-1
chr1_3	exon	37601990	37602087	37601990	ID=Msa0117240-mRNA-1:exon:11920;Parent=Msa0117240-mRNA-1
chr1_3	exon	37603370	37603460	37603370	ID=Msa0117240-mRNA-1:exon:11919;Parent=Msa0117240-mRNA-1
chr1_3	exon	37603545	37603862	37603545	ID=Msa0117240-mRNA-1:exon:11918;Parent=Msa0117240-mRNA-1
chr1_3	five_prime_UTR	37603677	37603862	37603677	ID=Msa0117240-mRNA-1:five_prime_utr;Parent=Msa0117240-mRNA-1
chr1_3	CDS	37603545	37603676	37603545	ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1
chr1_3	CDS	37603370	37603460	37603370	ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1
chr1_3	CDS	37601990	37602087	37601990	ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1
chr1_3	CDS	37601032	37601091	37601032	ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1
chr1_3	CDS	37600834	37600940	37600834	ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1
chr1_3	CDS	37600675	37600757	37600675	ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1
chr1_3	CDS	37600344	37600434	37600344	ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1
chr1_3	CDS	37600057	37600261	37600057	ID=Msa0117240-mRNA-1:cds;Parent=Msa0117240-mRNA-1
chr1_3	three_prime_UTR	37599674	37600056	37599674	ID=Msa0117240-mRNA-1:three_prime_utr;Parent=Msa0117240-mRNA-1

Gene Sequence

>Msa0117240

ATGGGTAAGAGTAAGAAGAAGAGAAGTAGGGTTTCAGTTTCCGACAACGAAGATGAAGAAATGAAATCGGATAATATCAACAACAACAACGACGGTTCCAGTTCCGATCAAAACCAAAACTCACTCTACCAGGTTCTTGGTGTGGAGAAGACAGCAACTAAACAAGAAATAAAGAAGGCGTATCACAAATTGGCGTTGAGACTTCATCCTGATAAGAATCCTGCTAAAGCCAAGTTTCAGCAATTGCAAAATGTTATCTCCATTCTCGGGGATGAAGAAAAACGAGCTCTTTATGATGAAACTGGTTGTGTTGATCATGCTGACCTTGCAGGAGATGTAGTTCAGGATCTTCAAGAATATTTCAGAACATTGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCTGAGAAAAATGATTTAATTAGACTTTACAAGGAATGCAAGGGTAATATGAACAGGTTATTTTGTTCAATGCTATGTTCGGATCCTAAACTCGACTCGCACCGATTCAAGGATATTATTGATGAGGCTATAGCTTCTGGAGAACTAAAGGAAAAGAAAGCGTACAAGAAATGGGCAAAGAAAATATCAGAAACCAAGCCGCCAACTAGTCCTTTACGAAGGAAGCAAAAATCAAGTAAGGAGCCAAAAACAGATCTGTATGCTATCATATCAAAACGACGAGATGAGAGGAAAGATCGGTTTGATTCTATGTTCTCGTCTCTAATCTCAAAATATGGTGGAAGCCATGTGCCCGAACCCTCTGAAGAGGAATTCGAAGCTACACAGAAAAAGATGGAAAGCCGAAGATCCTCAAAAAAGCCTAGGCGAAAGTAA

Protein sequence

>Msa0117240

MGKSKKKRSRVSVSDNEDEEMKSDNINNNNDGSSSDQNQNSLYQVLGVEKTATKQEIKKAYHKLALRLHPDKNPAKAKFQQLQNVISILGDEEKRALYDETGCVDHADLAGDVVQDLQEYFRTLYKKVTEADIEEFEANYRGSDSEKNDLIRLYKECKGNMNRLFCSMLCSDPKLDSHRFKDIIDEAIASGELKEKKAYKKWAKKISETKPPTSPLRRKQKSSKEPKTDLYAIISKRRDERKDRFDSMFSSLISKYGGSHVPEPSEEEFEATQKKMESRRSSKKPRRK*