Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070180 | XP_013467498.1 | 97.270 | 293 | 3 | 2 | 1 | 292 | 1 | 289 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070180 | sp|Q9FL54|DNAJ6_ARATH | 63.514 | 296 | 92 | 5 | 1 | 292 | 1 | 284 | 1.42e-117 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070180 | A0A072VTU1 | 97.270 | 293 | 3 | 2 | 1 | 292 | 1 | 289 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0070180 | 0.805360 | 1.386101e-49 | -8.615850e-47 |
| Msa0011960 | Msa0070180 | 0.806355 | 8.565992e-50 | -8.615850e-47 |
| Msa0025730 | Msa0070180 | 0.803757 | 2.993776e-49 | -8.615850e-47 |
| Msa0054480 | Msa0070180 | 0.810443 | 1.149991e-50 | -8.615850e-47 |
| Msa0061080 | Msa0070180 | 0.805847 | 1.095677e-49 | -8.615850e-47 |
| Msa0070180 | Msa0076000 | 0.800247 | 1.576219e-48 | -8.615850e-47 |
| Msa0070180 | Msa0078900 | 0.806673 | 7.336866e-50 | -8.615850e-47 |
| Msa0070180 | Msa0090360 | 0.806937 | 6.452119e-50 | -8.615850e-47 |
| Msa0070180 | Msa0101700 | 0.804333 | 2.272099e-49 | -8.615850e-47 |
| Msa0070180 | Msa0114060 | 0.810349 | 1.204525e-50 | -8.615850e-47 |
| Msa0070180 | Msa0117240 | 0.847962 | 8.297665e-60 | -8.615850e-47 |
| Msa0070180 | Msa0127050 | 0.802175 | 6.354023e-49 | -8.615850e-47 |
| Msa0070180 | Msa0142980 | 0.807869 | 4.093724e-50 | -8.615850e-47 |
| Msa0070180 | Msa0147250 | 0.815638 | 8.342088e-52 | -8.615850e-47 |
| Msa0070180 | Msa0150820 | 0.807565 | 4.749543e-50 | -8.615850e-47 |
| Msa0070180 | Msa0160550 | 0.818586 | 1.813946e-52 | -8.615850e-47 |
| Msa0070180 | Msa0168230 | 0.800329 | 1.517089e-48 | -8.615850e-47 |
| Msa0070180 | Msa0171540 | 0.810039 | 1.405139e-50 | -8.615850e-47 |
| Msa0070180 | Msa0184040 | 0.801097 | 1.057503e-48 | -8.615850e-47 |
| Msa0070180 | Msa0197660 | 0.803168 | 3.964552e-49 | -8.615850e-47 |
| Msa0070180 | Msa0212990 | 0.804451 | 2.146974e-49 | -8.615850e-47 |
| Msa0070180 | Msa0222620 | 0.813514 | 2.463135e-51 | -8.615850e-47 |
| Msa0070180 | Msa0228070 | 0.844931 | 5.567545e-59 | -8.615850e-47 |
| Msa0070180 | Msa0239800 | 0.810706 | 1.009009e-50 | -8.615850e-47 |
| Msa0070180 | Msa0260680 | 0.803311 | 3.703063e-49 | -8.615850e-47 |
| Msa0070180 | Msa0264150 | 0.816662 | 4.925806e-52 | -8.615850e-47 |
| Msa0070180 | Msa0271530 | 0.819907 | 9.075604e-53 | -8.615850e-47 |
| Msa0070180 | Msa0279790 | 0.800916 | 1.151415e-48 | -8.615850e-47 |
| Msa0070180 | Msa0280090 | 0.817978 | 2.490828e-52 | -8.615850e-47 |
| Msa0070180 | Msa0288100 | 0.802779 | 4.770918e-49 | -8.615850e-47 |
| Msa0070180 | Msa0299870 | 0.808977 | 2.375171e-50 | -8.615850e-47 |
| Msa0070180 | Msa0317510 | 0.810696 | 1.013782e-50 | -8.615850e-47 |
| Msa0070180 | Msa0318980 | 0.805772 | 1.136191e-49 | -8.615850e-47 |
| Msa0070180 | Msa0336420 | 0.807511 | 4.878540e-50 | -8.615850e-47 |
| Msa0070180 | Msa0339250 | 0.814968 | 1.175967e-51 | -8.615850e-47 |
| Msa0070180 | Msa0385580 | 0.809204 | 2.124238e-50 | -8.615850e-47 |
| Msa0070180 | Msa0388700 | 0.804317 | 2.289510e-49 | -8.615850e-47 |
| Msa0070180 | Msa0410650 | 0.806854 | 6.720708e-50 | -8.615850e-47 |
| Msa0070180 | Msa0432770 | 0.806166 | 9.385064e-50 | -8.615850e-47 |
| Msa0070180 | Msa0436760 | 0.806701 | 7.240273e-50 | -8.615850e-47 |
| Msa0070180 | Msa0442200 | 0.805858 | 1.089702e-49 | -8.615850e-47 |
| Msa0070180 | Msa0453200 | 0.813653 | 2.295431e-51 | -8.615850e-47 |
| Msa0070180 | Msa0479660 | 0.820519 | 6.572136e-53 | -8.615850e-47 |
| Msa0070180 | Msa0481530 | 0.822290 | 2.563348e-53 | -8.615850e-47 |
| Msa0070180 | Msa0485120 | 0.803296 | 3.729436e-49 | -8.615850e-47 |
| Msa0070180 | Msa0498650 | 0.805747 | 1.149541e-49 | -8.615850e-47 |
| Msa0070180 | Msa0507680 | 0.809635 | 1.716934e-50 | -8.615850e-47 |
| Msa0070180 | Msa0512750 | 0.802304 | 5.977621e-49 | -8.615850e-47 |
| Msa0070180 | Msa0529890 | 0.817726 | 2.839153e-52 | -8.615850e-47 |
| Msa0070180 | Msa0555450 | 0.835975 | 1.226593e-56 | -8.615850e-47 |
| Msa0070180 | Msa0557070 | 0.815922 | 7.212456e-52 | -8.615850e-47 |
| Msa0070180 | Msa0585560 | 0.812541 | 4.025916e-51 | -8.615850e-47 |
| Msa0070180 | Msa0607050 | 0.819367 | 1.205740e-52 | -8.615850e-47 |
| Msa0070180 | Msa0610130 | 0.808883 | 2.487749e-50 | -8.615850e-47 |
| Msa0070180 | Msa0610430 | 0.821566 | 3.772706e-53 | -8.615850e-47 |
| Msa0070180 | Msa0617640 | 0.801508 | 8.710685e-49 | -8.615850e-47 |
| Msa0070180 | Msa0625720 | 0.816142 | 6.439596e-52 | -8.615850e-47 |
| Msa0070180 | Msa0663390 | 0.818625 | 1.777628e-52 | -8.615850e-47 |
| Msa0070180 | Msa0687020 | 0.809772 | 1.603812e-50 | -8.615850e-47 |
| Msa0070180 | Msa0689260 | 0.819732 | 9.950104e-53 | -8.615850e-47 |
| Msa0070180 | Msa0690150 | 0.801033 | 1.089950e-48 | -8.615850e-47 |
| Msa0070180 | Msa0691900 | 0.806428 | 8.266270e-50 | -8.615850e-47 |
| Msa0070180 | Msa0692830 | 0.814592 | 1.424156e-51 | -8.615850e-47 |
| Msa0070180 | Msa0709500 | 0.812263 | 4.628762e-51 | -8.615850e-47 |
| Msa0070180 | Msa0711780 | 0.806515 | 7.924584e-50 | -8.615850e-47 |
| Msa0070180 | Msa0715700 | 0.807970 | 3.895554e-50 | -8.615850e-47 |
| Msa0070180 | Msa0716840 | 0.800325 | 1.519913e-48 | -8.615850e-47 |
| Msa0070180 | Msa0762970 | 0.803655 | 3.142140e-49 | -8.615850e-47 |
| Msa0070180 | Msa0790850 | 0.800897 | 1.161505e-48 | -8.615850e-47 |
| Msa0070180 | Msa0794670 | 0.814823 | 1.266290e-51 | -8.615850e-47 |
| Msa0070180 | Msa0808270 | 0.807498 | 4.909109e-50 | -8.615850e-47 |
| Msa0070180 | Msa0876200 | 0.801683 | 8.021329e-49 | -8.615850e-47 |
| Msa0070180 | Msa0902760 | 0.827232 | 1.752739e-54 | -8.615850e-47 |
| Msa0070180 | Msa0938220 | 0.810639 | 1.043156e-50 | -8.615850e-47 |
| Msa0070180 | Msa0947660 | 0.816535 | 5.258972e-52 | -8.615850e-47 |
| Msa0070180 | Msa0968680 | 0.805686 | 1.184242e-49 | -8.615850e-47 |
| Msa0070180 | Msa0969810 | 0.818886 | 1.551383e-52 | -8.615850e-47 |
| Msa0070180 | Msa0970030 | 0.847281 | 1.277015e-59 | -8.615850e-47 |
| Msa0070180 | Msa0978250 | 0.800217 | 1.598429e-48 | -8.615850e-47 |
| Msa0070180 | Msa1013400 | 0.821874 | 3.200556e-53 | -8.615850e-47 |
| Msa0070180 | Msa1024750 | 0.806165 | 9.391672e-50 | -8.615850e-47 |
| Msa0070180 | Msa1034150 | 0.800956 | 1.130108e-48 | -8.615850e-47 |
| Msa0070180 | Msa1040400 | 0.805422 | 1.345391e-49 | -8.615850e-47 |
| Msa0070180 | Msa1046020 | 0.805568 | 1.253570e-49 | -8.615850e-47 |
| Msa0070180 | Msa1046060 | 0.809808 | 1.575853e-50 | -8.615850e-47 |
| Msa0070180 | Msa1075540 | 0.826389 | 2.786676e-54 | -8.615850e-47 |
| Msa0070180 | Msa1079590 | 0.803910 | 2.781741e-49 | -8.615850e-47 |
| Msa0070180 | Msa1082500 | 0.800041 | 1.735842e-48 | -8.615850e-47 |
| Msa0070180 | Msa1085200 | 0.812146 | 4.908695e-51 | -8.615850e-47 |
| Msa0070180 | Msa1091100 | 0.800844 | 1.190942e-48 | -8.615850e-47 |
| Msa0070180 | Msa1093530 | 0.824035 | 1.003537e-53 | -8.615850e-47 |
| Msa0070180 | Msa1119480 | 0.802746 | 4.847502e-49 | -8.615850e-47 |
| Msa0070180 | Msa1124960 | 0.801600 | 8.341196e-49 | -8.615850e-47 |
| Msa0070180 | Msa1125760 | 0.801939 | 7.105471e-49 | -8.615850e-47 |
| Msa0070180 | Msa1154280 | 0.804984 | 1.661608e-49 | -8.615850e-47 |
| Msa0070180 | Msa1160590 | 0.808912 | 2.452312e-50 | -8.615850e-47 |
| Msa0070180 | Msa1169550 | 0.800237 | 1.583674e-48 | -8.615850e-47 |
| Msa0070180 | Msa1171360 | 0.810304 | 1.231758e-50 | -8.615850e-47 |
| Msa0070180 | Msa1174040 | 0.802605 | 5.183453e-49 | -8.615850e-47 |
| Msa0070180 | Msa1193290 | 0.810786 | 9.693619e-51 | -8.615850e-47 |
| Msa0070180 | Msa1207270 | 0.819207 | 1.311288e-52 | -8.615850e-47 |
| Msa0070180 | Msa1208880 | 0.806652 | 7.415240e-50 | -8.615850e-47 |
| Msa0070180 | Msa1210020 | 0.803135 | 4.026833e-49 | -8.615850e-47 |
| Msa0070180 | Msa1218600 | 0.823811 | 1.132556e-53 | -8.615850e-47 |
| Msa0070180 | Msa1245930 | 0.804456 | 2.141140e-49 | -8.615850e-47 |
| Msa0070180 | Msa1254730 | 0.810303 | 1.232585e-50 | -8.615850e-47 |
| Msa0070180 | Msa1257130 | 0.803599 | 3.227794e-49 | -8.615850e-47 |
| Msa0070180 | Msa1259060 | 0.802409 | 5.688504e-49 | -8.615850e-47 |
| Msa0070180 | Msa1259490 | -0.808638 | 2.806948e-50 | -8.615850e-47 |
| Msa0070180 | Msa1275360 | 0.817067 | 3.996336e-52 | -8.615850e-47 |
| Msa0070180 | Msa1294820 | 0.820265 | 7.514502e-53 | -8.615850e-47 |
| Msa0070180 | Msa1305340 | 0.816847 | 4.478643e-52 | -8.615850e-47 |
| Msa0070180 | Msa1305710 | 0.808863 | 2.512356e-50 | -8.615850e-47 |
| Msa0070180 | Msa1306840 | 0.801853 | 7.400781e-49 | -8.615850e-47 |
| Msa0070180 | Msa1327680 | 0.809365 | 1.961327e-50 | -8.615850e-47 |
| Msa0070180 | Msa1348560 | 0.805544 | 1.267993e-49 | -8.615850e-47 |
| Msa0070180 | Msa1353980 | 0.823020 | 1.734319e-53 | -8.615850e-47 |
| Msa0070180 | Msa1356440 | 0.840983 | 6.257543e-58 | -8.615850e-47 |
| Msa0070180 | Msa1358250 | 0.819742 | 9.897500e-53 | -8.615850e-47 |
| Msa0070180 | Msa1359040 | 0.805312 | 1.418469e-49 | -8.615850e-47 |
| Msa0070180 | Msa1370070 | -0.843910 | 1.047849e-58 | -8.615850e-47 |
| Msa0070180 | Msa1374470 | 0.801598 | 8.348641e-49 | -8.615850e-47 |
| Msa0070180 | Msa1385670 | 0.808547 | 2.934934e-50 | -8.615850e-47 |
| Msa0070180 | Msa1387420 | 0.800416 | 1.455825e-48 | -8.615850e-47 |
| Msa0070180 | Msa1392780 | 0.804641 | 1.959969e-49 | -8.615850e-47 |
| Msa0070180 | Msa1394290 | 0.800777 | 1.229278e-48 | -8.615850e-47 |
| Msa0070180 | Msa1415640 | 0.803797 | 2.936146e-49 | -8.615850e-47 |
| Msa0070180 | Msa1419870 | 0.800949 | 1.133595e-48 | -8.615850e-47 |
| Msa0070180 | Msa1423350 | 0.806063 | 9.869050e-50 | -8.615850e-47 |
| Msa0070180 | Msa1424750 | 0.815669 | 8.212181e-52 | -8.615850e-47 |
| Msa0070180 | Msa1433390 | 0.805995 | 1.019620e-49 | -8.615850e-47 |
| Msa0070180 | Msa1440000 | 0.806182 | 9.314235e-50 | -8.615850e-47 |
| Msa0070180 | Msa1457920 | 0.813522 | 2.452561e-51 | -8.615850e-47 |
| Msa0070180 | Msa1466540 | 0.810318 | 1.223774e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070180 | MtrunA17_Chr1g0173931 | 97.270 | 293 | 3 | 2 | 1 | 292 | 1 | 289 | 0.0 | 574 |
| Msa0070180 | MtrunA17_Chr7g0258061 | 78.261 | 253 | 54 | 1 | 29 | 281 | 10 | 261 | 2.61e-146 | 411 |
| Msa0070180 | MtrunA17_Chr7g0269841 | 51.515 | 66 | 32 | 0 | 41 | 106 | 26 | 91 | 6.38e-15 | 73.9 |
| Msa0070180 | MtrunA17_Chr7g0271891 | 50.769 | 65 | 28 | 2 | 43 | 103 | 18 | 82 | 1.11e-13 | 67.8 |
| Msa0070180 | MtrunA17_Chr2g0282741 | 47.692 | 65 | 33 | 1 | 43 | 106 | 6 | 70 | 1.97e-13 | 69.7 |
| Msa0070180 | MtrunA17_Chr3g0087741 | 52.308 | 65 | 31 | 0 | 42 | 106 | 90 | 154 | 2.26e-13 | 70.1 |
| Msa0070180 | MtrunA17_Chr4g0040501 | 49.231 | 65 | 32 | 1 | 43 | 106 | 6 | 70 | 3.84e-13 | 68.9 |
| Msa0070180 | MtrunA17_Chr3g0138471 | 46.154 | 65 | 34 | 1 | 43 | 106 | 6 | 70 | 4.07e-13 | 68.6 |
| Msa0070180 | MtrunA17_Chr7g0242951 | 53.125 | 64 | 29 | 1 | 43 | 106 | 29 | 91 | 7.55e-13 | 68.6 |
| Msa0070180 | MtrunA17_Chr1g0209551 | 37.963 | 108 | 61 | 2 | 31 | 132 | 6 | 113 | 1.19e-12 | 67.8 |
| Msa0070180 | MtrunA17_Chr4g0010781 | 53.030 | 66 | 31 | 0 | 41 | 106 | 86 | 151 | 1.28e-12 | 67.8 |
| Msa0070180 | MtrunA17_Chr2g0282761 | 41.573 | 89 | 45 | 3 | 43 | 127 | 6 | 91 | 1.38e-12 | 67.0 |
| Msa0070180 | MtrunA17_Chr2g0324921 | 47.692 | 65 | 33 | 1 | 43 | 106 | 6 | 70 | 3.87e-12 | 65.9 |
| Msa0070180 | MtrunA17_Chr3g0123861 | 51.515 | 66 | 27 | 2 | 43 | 106 | 84 | 146 | 4.19e-12 | 66.2 |
| Msa0070180 | MtrunA17_Chr8g0352451 | 37.383 | 107 | 63 | 2 | 24 | 129 | 54 | 157 | 1.00e-11 | 65.1 |
| Msa0070180 | MtrunA17_Chr8g0344721 | 38.462 | 91 | 46 | 3 | 40 | 121 | 9 | 98 | 1.23e-11 | 63.2 |
| Msa0070180 | MtrunA17_Chr1g0206121 | 39.130 | 92 | 50 | 3 | 38 | 129 | 32 | 117 | 1.27e-11 | 63.9 |
| Msa0070180 | MtrunA17_Chr4g0006391 | 44.615 | 65 | 35 | 1 | 43 | 106 | 6 | 70 | 1.30e-11 | 64.3 |
| Msa0070180 | MtrunA17_Chr5g0414471 | 48.438 | 64 | 33 | 0 | 43 | 106 | 27 | 90 | 1.37e-11 | 64.7 |
| Msa0070180 | MtrunA17_Chr4g0021141 | 38.272 | 81 | 46 | 1 | 33 | 109 | 10 | 90 | 1.42e-11 | 61.2 |
| Msa0070180 | MtrunA17_Chr5g0393371 | 40.230 | 87 | 49 | 1 | 43 | 129 | 8 | 91 | 2.66e-11 | 63.5 |
| Msa0070180 | MtrunA17_Chr2g0333221 | 50.000 | 66 | 28 | 2 | 43 | 106 | 72 | 134 | 2.87e-11 | 63.5 |
| Msa0070180 | MtrunA17_Chr6g0460461 | 48.485 | 66 | 29 | 1 | 43 | 103 | 4 | 69 | 8.61e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070180 | AT3G12170.1 | 69.444 | 252 | 74 | 1 | 30 | 281 | 3 | 251 | 5.15e-130 | 370 |
| Msa0070180 | AT3G12170.2 | 69.444 | 252 | 74 | 1 | 30 | 281 | 39 | 287 | 4.21e-129 | 369 |
| Msa0070180 | AT5G06910.1 | 63.514 | 296 | 92 | 5 | 1 | 292 | 1 | 284 | 1.44e-118 | 342 |
| Msa0070180 | AT1G56300.1 | 47.826 | 69 | 32 | 2 | 39 | 103 | 11 | 79 | 2.86e-14 | 69.3 |
| Msa0070180 | AT1G56300.2 | 46.667 | 75 | 35 | 3 | 39 | 109 | 11 | 84 | 2.90e-14 | 68.6 |
| Msa0070180 | AT3G62600.1 | 51.515 | 66 | 32 | 0 | 41 | 106 | 26 | 91 | 3.89e-14 | 72.0 |
| Msa0070180 | AT5G01390.3 | 48.485 | 66 | 33 | 1 | 42 | 106 | 5 | 70 | 6.75e-14 | 70.1 |
| Msa0070180 | AT5G01390.4 | 48.485 | 66 | 33 | 1 | 42 | 106 | 5 | 70 | 7.96e-14 | 70.1 |
| Msa0070180 | AT5G48030.1 | 56.250 | 64 | 28 | 0 | 43 | 106 | 96 | 159 | 8.27e-14 | 71.6 |
| Msa0070180 | AT1G59980.2 | 43.038 | 79 | 45 | 0 | 28 | 106 | 10 | 88 | 1.49e-13 | 70.5 |
| Msa0070180 | AT1G59980.1 | 43.038 | 79 | 45 | 0 | 28 | 106 | 10 | 88 | 1.51e-13 | 70.9 |
| Msa0070180 | AT5G01390.2 | 48.485 | 66 | 33 | 1 | 42 | 106 | 5 | 70 | 1.64e-13 | 69.7 |
| Msa0070180 | AT5G01390.1 | 48.485 | 66 | 33 | 1 | 42 | 106 | 5 | 70 | 2.27e-13 | 69.7 |
| Msa0070180 | AT5G03160.1 | 53.226 | 62 | 28 | 1 | 43 | 103 | 372 | 433 | 5.06e-13 | 69.3 |
| Msa0070180 | AT4G39150.3 | 51.562 | 64 | 31 | 0 | 43 | 106 | 8 | 71 | 6.05e-13 | 68.6 |
| Msa0070180 | AT4G39150.1 | 51.562 | 64 | 31 | 0 | 43 | 106 | 8 | 71 | 6.05e-13 | 68.6 |
| Msa0070180 | AT4G39150.2 | 51.562 | 64 | 31 | 0 | 43 | 106 | 8 | 71 | 6.05e-13 | 68.6 |
| Msa0070180 | AT1G68370.1 | 39.815 | 108 | 59 | 2 | 31 | 132 | 7 | 114 | 6.07e-13 | 68.9 |
| Msa0070180 | AT2G21510.2 | 37.931 | 116 | 59 | 3 | 43 | 145 | 8 | 123 | 6.41e-13 | 68.6 |
| Msa0070180 | AT2G21510.4 | 37.931 | 116 | 59 | 3 | 43 | 145 | 8 | 123 | 6.41e-13 | 68.6 |
| Msa0070180 | AT2G21510.3 | 37.931 | 116 | 59 | 3 | 43 | 145 | 8 | 123 | 7.27e-13 | 68.6 |
| Msa0070180 | AT2G21510.1 | 37.931 | 116 | 59 | 3 | 43 | 145 | 8 | 123 | 7.27e-13 | 68.6 |
| Msa0070180 | AT4G39960.1 | 46.988 | 83 | 40 | 2 | 42 | 124 | 86 | 164 | 9.81e-13 | 68.6 |
| Msa0070180 | AT4G39960.2 | 46.988 | 83 | 40 | 2 | 42 | 124 | 86 | 164 | 9.81e-13 | 68.6 |
| Msa0070180 | AT2G21510.5 | 37.931 | 116 | 59 | 3 | 43 | 145 | 8 | 123 | 1.03e-12 | 67.8 |
| Msa0070180 | AT4G28480.2 | 47.692 | 65 | 33 | 1 | 43 | 106 | 6 | 70 | 1.03e-12 | 67.4 |
| Msa0070180 | AT3G08910.1 | 47.692 | 65 | 33 | 1 | 43 | 106 | 6 | 70 | 1.13e-12 | 67.8 |
| Msa0070180 | AT4G28480.1 | 47.692 | 65 | 33 | 1 | 43 | 106 | 6 | 70 | 1.38e-12 | 67.8 |
| Msa0070180 | AT5G25530.2 | 47.692 | 65 | 33 | 1 | 43 | 106 | 6 | 70 | 1.38e-12 | 67.4 |
| Msa0070180 | AT3G14200.1 | 47.297 | 74 | 36 | 1 | 33 | 103 | 4 | 77 | 2.29e-12 | 65.9 |
| Msa0070180 | AT1G76700.1 | 41.379 | 87 | 48 | 1 | 43 | 129 | 8 | 91 | 3.27e-12 | 66.6 |
| Msa0070180 | AT1G59725.1 | 46.970 | 66 | 33 | 1 | 43 | 106 | 6 | 71 | 4.19e-12 | 66.2 |
| Msa0070180 | AT2G22360.1 | 53.030 | 66 | 26 | 2 | 43 | 106 | 88 | 150 | 5.17e-12 | 66.2 |
| Msa0070180 | AT1G21080.1 | 47.059 | 68 | 36 | 0 | 39 | 106 | 4 | 71 | 6.85e-12 | 65.9 |
| Msa0070180 | AT1G21080.3 | 47.059 | 68 | 36 | 0 | 39 | 106 | 4 | 71 | 6.89e-12 | 65.9 |
| Msa0070180 | AT2G20560.1 | 44.615 | 65 | 35 | 1 | 43 | 106 | 6 | 70 | 1.10e-11 | 65.1 |
| Msa0070180 | AT3G08970.1 | 53.125 | 64 | 29 | 1 | 43 | 106 | 29 | 91 | 1.29e-11 | 65.5 |
| Msa0070180 | AT3G08970.2 | 53.125 | 64 | 29 | 1 | 43 | 106 | 29 | 91 | 1.29e-11 | 65.5 |
| Msa0070180 | AT5G49060.2 | 42.667 | 75 | 38 | 2 | 40 | 112 | 98 | 169 | 1.95e-11 | 64.3 |
| Msa0070180 | AT5G49060.1 | 42.667 | 75 | 38 | 2 | 40 | 112 | 98 | 169 | 1.95e-11 | 64.3 |
| Msa0070180 | AT1G28210.3 | 42.169 | 83 | 40 | 2 | 21 | 103 | 36 | 110 | 6.24e-11 | 62.8 |
| Msa0070180 | AT1G28210.1 | 42.169 | 83 | 40 | 2 | 21 | 103 | 36 | 110 | 7.03e-11 | 62.8 |
| Msa0070180 | AT1G28210.2 | 42.169 | 83 | 40 | 2 | 21 | 103 | 36 | 110 | 7.10e-11 | 62.8 |
| Msa0070180 | AT5G16650.1 | 43.284 | 67 | 38 | 0 | 43 | 109 | 13 | 79 | 8.94e-11 | 58.9 |
Find 79 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATAGTCTGTTTCTTTCA+TGG | 0.210797 | 1_2:-39923308 | Msa0070180:three_prime_UTR |
| AGAACATTGGCAACTTAAAT+TGG | 0.217792 | 1_2:+39923163 | None:intergenic |
| ATGTTGTGCGTTTGAGTTTA+TGG | 0.249043 | 1_2:+39923038 | None:intergenic |
| ATTATTTATTATTAGGTTCT+TGG | 0.249667 | 1_2:-39926568 | Msa0070180:intron |
| CAATGTTCTTGGTGAGTTTA+TGG | 0.261683 | 1_2:-39923149 | Msa0070180:three_prime_UTR |
| ATTTAAGTTGCCAATGTTCT+TGG | 0.261737 | 1_2:-39923160 | Msa0070180:three_prime_UTR |
| CAGAAGAAAAGAAAAGAAAA+TGG | 0.268352 | 1_2:-39926793 | Msa0070180:exon |
| AATCGGTGCGAGTCGAGTTT+AGG | 0.311498 | 1_2:+39924159 | None:intergenic |
| GAATTCCTCTTCAGAGGGTT+CGG | 0.312967 | 1_2:+39923405 | None:intergenic |
| AAAAGAAAGCGTACAAGAAA+TGG | 0.336249 | 1_2:-39923688 | Msa0070180:CDS |
| TCTGAAAACCAGGACCTTGC+AGG | 0.336660 | 1_2:-39924531 | Msa0070180:intron |
| TTACCTGGTAGAGTGAGTTT+TGG | 0.362358 | 1_2:+39926661 | None:intergenic |
| TCGTCTCTAATCTCAAAATA+TGG | 0.366431 | 1_2:-39923442 | Msa0070180:CDS |
| TTTAAATTAATAACAAGGAT+TGG | 0.367890 | 1_2:+39926917 | None:intergenic |
| AAAGAAGGCGTATCACAAAT+TGG | 0.377076 | 1_2:-39926515 | Msa0070180:CDS |
| AGAGTAAGAAGAAGAGAAGT+AGG | 0.379816 | 1_2:-39926767 | Msa0070180:CDS |
| TTAAATTAATAACAAGGATT+GGG | 0.380930 | 1_2:+39926918 | None:intergenic |
| CATTTCTTCATCTTCGTTGT+CGG | 0.385746 | 1_2:+39926734 | None:intergenic |
| CGGGCACTTTATGATGAAAC+TGG | 0.385964 | 1_2:-39925490 | Msa0070180:CDS |
| ATTGATGAGGCTATAGCTTC+TGG | 0.387082 | 1_2:-39924126 | Msa0070180:intron |
| ACTCGACTCGCACCGATTCA+AGG | 0.388457 | 1_2:-39924154 | Msa0070180:CDS |
| AATTCCTCTTCAGAGGGTTC+GGG | 0.389041 | 1_2:+39923406 | None:intergenic |
| CAAAATGTTATCTCCATTCT+CGG | 0.394188 | 1_2:-39925526 | Msa0070180:CDS |
| TGATCACCAGGGTTCTTATC+AGG | 0.396650 | 1_2:+39926478 | None:intergenic |
| GTCACTTCACTATTGTTAGT+TGG | 0.400433 | 1_2:-39923280 | Msa0070180:three_prime_UTR |
| CGAAGATGAAGAAATGAAAT+CGG | 0.415140 | 1_2:-39926727 | Msa0070180:CDS |
| AATCTTCTACAGATCAAGTA+AGG | 0.435909 | 1_2:-39923539 | Msa0070180:intron |
| TGATAAGAACCCTGGTGATC+AGG | 0.438239 | 1_2:-39926476 | Msa0070180:intron |
| CCTTGCAGGAGATGTAGTTC+AGG | 0.442757 | 1_2:-39924517 | Msa0070180:CDS |
| CTTCAGAGGGTTCGGGCACA+TGG | 0.444877 | 1_2:+39923413 | None:intergenic |
| GGTTCCTTGGAGGCTATAAA+TGG | 0.449963 | 1_2:+39922953 | None:intergenic |
| AGAAGAAAAGAAAAGAAAAT+GGG | 0.457144 | 1_2:-39926792 | Msa0070180:exon |
| AAAATGTTATCTCCATTCTC+GGG | 0.461779 | 1_2:-39925525 | Msa0070180:CDS |
| AATGCAAGGGTAATATGAAC+AGG | 0.467520 | 1_2:-39924284 | Msa0070180:intron |
| TAAAGGACTAGTTGGCGGCT+TGG | 0.473285 | 1_2:+39923646 | None:intergenic |
| TGATTTAATTAGACTTTACA+AGG | 0.489056 | 1_2:-39924307 | Msa0070180:CDS |
| TGATGGCAGAAGCGAAAGGC+GGG | 0.489762 | 1_2:-39926950 | Msa0070180:five_prime_UTR |
| CTTCGTAAAGGACTAGTTGG+CGG | 0.491008 | 1_2:+39923641 | None:intergenic |
| TATATCTGCAGGAGAACTAA+AGG | 0.492660 | 1_2:-39923711 | Msa0070180:intron |
| AAAGAAAGCGTACAAGAAAT+GGG | 0.493039 | 1_2:-39923687 | Msa0070180:CDS |
| CATCAATAATATCCTTGAAT+CGG | 0.494545 | 1_2:+39924142 | None:intergenic |
| TGTTACTCATTCTGCCATCA+TGG | 0.494907 | 1_2:-39923099 | Msa0070180:three_prime_UTR |
| TTCCTTCGTAAAGGACTAGT+TGG | 0.496942 | 1_2:+39923638 | None:intergenic |
| GCTTCGAATTCCTCTTCAGA+GGG | 0.517725 | 1_2:+39923400 | None:intergenic |
| GAGAAACTGACCTGATCACC+AGG | 0.526893 | 1_2:+39926466 | None:intergenic |
| CAAGTTGGTTACTTTCGCCT+AGG | 0.529009 | 1_2:+39923337 | None:intergenic |
| TTTCAGAACATTGTACAAGA+AGG | 0.533814 | 1_2:-39924481 | Msa0070180:intron |
| GAGTAAGAAGAAGAGAAGTA+GGG | 0.538087 | 1_2:-39926766 | Msa0070180:CDS |
| TAGACTTTACAAGGAATGCA+AGG | 0.538206 | 1_2:-39924298 | Msa0070180:CDS |
| GACTATACAGAAAGGCAAGT+TGG | 0.539303 | 1_2:+39923322 | None:intergenic |
| GAGTTTGAAGCAAACTATAG+AGG | 0.541052 | 1_2:-39924348 | Msa0070180:CDS |
| ACGAGAACATAGAATCAAAC+CGG | 0.544920 | 1_2:+39923461 | None:intergenic |
| TTAAATTTAAATTAATAACA+AGG | 0.545577 | 1_2:+39926912 | None:intergenic |
| TAGCTTCATTCAGACTCAAA+TGG | 0.549828 | 1_2:+39923061 | None:intergenic |
| CATAAACTCACCAAGAACAT+TGG | 0.555776 | 1_2:+39923150 | None:intergenic |
| AAACCAAAACTCACTCTACC+AGG | 0.561284 | 1_2:-39926664 | Msa0070180:intron |
| AGCTTCGAATTCCTCTTCAG+AGG | 0.566300 | 1_2:+39923399 | None:intergenic |
| GGTCACTGAAGCTGATATTG+AGG | 0.567799 | 1_2:-39924370 | Msa0070180:CDS |
| AAATTCATGCACCTCCATGA+TGG | 0.571981 | 1_2:+39923085 | None:intergenic |
| ATTCAAGGATATTATTGATG+AGG | 0.571989 | 1_2:-39924139 | Msa0070180:CDS |
| AACTAAACAAGAAATAAAGA+AGG | 0.573873 | 1_2:-39926530 | Msa0070180:CDS |
| TCTCTAATCTCAAAATATGG+TGG | 0.580345 | 1_2:-39923439 | Msa0070180:CDS |
| GACGAGATGAGAGGAAAGAC+CGG | 0.588828 | 1_2:-39923480 | Msa0070180:CDS |
| TTATTATTAGGTTCTTGGTG+TGG | 0.593713 | 1_2:-39926563 | Msa0070180:intron |
| TGTGCCCGAACCCTCTGAAG+AGG | 0.595257 | 1_2:-39923410 | Msa0070180:CDS |
| AGACTTTACAAGGAATGCAA+GGG | 0.606865 | 1_2:-39924297 | Msa0070180:CDS |
| AAGAAACAGACTATACAGAA+AGG | 0.607792 | 1_2:+39923314 | None:intergenic |
| TATCAAAACGACGAGATGAG+AGG | 0.612573 | 1_2:-39923489 | Msa0070180:CDS |
| TGACGGCGGGAAAAGAGTGA+TGG | 0.622725 | 1_2:-39926967 | None:intergenic |
| AAATGTTATCTCCATTCTCG+GGG | 0.645657 | 1_2:-39925524 | Msa0070180:CDS |
| CTTCATCCTGATAAGAACCC+TGG | 0.652291 | 1_2:-39926484 | Msa0070180:CDS |
| GTGATGGCAGAAGCGAAAGG+CGG | 0.654334 | 1_2:-39926951 | Msa0070180:five_prime_UTR |
| CGCCAACTAGTCCTTTACGA+AGG | 0.677178 | 1_2:-39923640 | Msa0070180:CDS |
| AATATCAACAACAACAACGA+CGG | 0.683772 | 1_2:-39926702 | Msa0070180:CDS |
| CCTGAACTACATCTCCTGCA+AGG | 0.687635 | 1_2:+39924517 | None:intergenic |
| AGAGTGATGGCAGAAGCGAA+AGG | 0.697275 | 1_2:-39926954 | Msa0070180:five_prime_UTR |
| TACTCATTCTGCCATCATGG+AGG | 0.707421 | 1_2:-39923096 | Msa0070180:three_prime_UTR |
| AGAAACTGACCTGATCACCA+GGG | 0.765204 | 1_2:+39926467 | None:intergenic |
| AAATTGGTAAAAGATAACAC+AGG | 0.769111 | 1_2:+39923179 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTGAATTATTTATTATT+AGG | - | chr1_2:39923346-39923365 | Msa0070180:CDS | 10.0% |
| !! | TTAAATTAATAACAAGGATT+GGG | + | chr1_2:39923006-39923025 | None:intergenic | 15.0% |
| !! | TTTAAATTAATAACAAGGAT+TGG | + | chr1_2:39923007-39923026 | None:intergenic | 15.0% |
| !! | ATTATTTATTATTAGGTTCT+TGG | - | chr1_2:39923353-39923372 | Msa0070180:CDS | 15.0% |
| !! | TTATCAGTGAAAAATAAATA+GGG | + | chr1_2:39924103-39924122 | None:intergenic | 15.0% |
| !! | ATTATCAGTGAAAAATAAAT+AGG | + | chr1_2:39924104-39924123 | None:intergenic | 15.0% |
| !!! | TATACAATGCTTTTTTTTTA+GGG | + | chr1_2:39924535-39924554 | None:intergenic | 15.0% |
| !!! | TTATACAATGCTTTTTTTTT+AGG | + | chr1_2:39924536-39924555 | None:intergenic | 15.0% |
| !!! | TAAACGTTCTTTTTTTTTTT+TGG | - | chr1_2:39924712-39924731 | Msa0070180:intron | 15.0% |
| !!! | TATTTTGCATATTAATAGAT+AGG | - | chr1_2:39926140-39926159 | Msa0070180:intron | 15.0% |
| !! | AGAAGAAAAGAAAAGAAAAT+GGG | - | chr1_2:39923129-39923148 | Msa0070180:three_prime_UTR | 20.0% |
| !! | TAATTAGAAATGTTGAAGTA+AGG | + | chr1_2:39923289-39923308 | None:intergenic | 20.0% |
| !! | AACTAAACAAGAAATAAAGA+AGG | - | chr1_2:39923391-39923410 | Msa0070180:CDS | 20.0% |
| !!! | AAATAGAAGTATATGAAGTA+CGG | + | chr1_2:39923608-39923627 | None:intergenic | 20.0% |
| !! | TATGAGTAAGTATACATTAT+GGG | - | chr1_2:39923877-39923896 | Msa0070180:intron | 20.0% |
| !! | AACTAAAATCAAAATACTAC+GGG | + | chr1_2:39924067-39924086 | None:intergenic | 20.0% |
| !! | CAACTAAAATCAAAATACTA+CGG | + | chr1_2:39924068-39924087 | None:intergenic | 20.0% |
| !!! | ATTTTTCACTGATAATAAGA+CGG | - | chr1_2:39924108-39924127 | Msa0070180:intron | 20.0% |
| !!! | TTTCGTTTATCTTTTGTTAA+GGG | - | chr1_2:39924215-39924234 | Msa0070180:intron | 20.0% |
| !!! | TGATTTTGATTGGTTATATT+TGG | + | chr1_2:39924497-39924516 | None:intergenic | 20.0% |
| !!! | CATTATACAATGATTTTGAT+TGG | + | chr1_2:39924507-39924526 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAATCTTGTATC+CGG | - | chr1_2:39924889-39924908 | Msa0070180:intron | 20.0% |
| !!! | ATTTTTTTATATCAAAGGCA+AGG | - | chr1_2:39924984-39925003 | Msa0070180:intron | 20.0% |
| !! | ACATTGCAAATTAGAAAATA+AGG | + | chr1_2:39925245-39925264 | None:intergenic | 20.0% |
| !! | TGATTTAATTAGACTTTACA+AGG | - | chr1_2:39925614-39925633 | Msa0070180:intron | 20.0% |
| !!! | AATATTTCACTTTTGTTTGA+TGG | - | chr1_2:39926166-39926185 | Msa0070180:intron | 20.0% |
| ! | CAGAAGAAAAGAAAAGAAAA+TGG | - | chr1_2:39923128-39923147 | Msa0070180:three_prime_UTR | 25.0% |
| ! | ATTATTATCAGTGTCAGTTT+AGG | - | chr1_2:39923634-39923653 | Msa0070180:CDS | 25.0% |
| !!! | AATTTGTCGTATTTTTGTAC+TGG | + | chr1_2:39923735-39923754 | None:intergenic | 25.0% |
| ! | TAATGTATACTTACTCATAC+CGG | + | chr1_2:39923876-39923895 | None:intergenic | 25.0% |
| ! | GTATGAGTAAGTATACATTA+TGG | - | chr1_2:39923876-39923895 | Msa0070180:intron | 25.0% |
| ! | CTTAACAAAAGATAAACGAA+AGG | + | chr1_2:39924216-39924235 | None:intergenic | 25.0% |
| !! | CTTTCGTTTATCTTTTGTTA+AGG | - | chr1_2:39924214-39924233 | Msa0070180:intron | 25.0% |
| !!! | TTTTGATTGGTTATATTTGG+AGG | + | chr1_2:39924494-39924513 | None:intergenic | 25.0% |
| ! | TAACGACATTATTAACTACA+TGG | - | chr1_2:39924553-39924572 | Msa0070180:intron | 25.0% |
| ! | ATGATCGAATATTTAAGCTT+GGG | - | chr1_2:39924664-39924683 | Msa0070180:intron | 25.0% |
| !!! | ATTGCTTTTGTTAGTTTTTC+TGG | - | chr1_2:39925124-39925143 | Msa0070180:intron | 25.0% |
| ! | CTAAGAATAGATGAAAATGT+TGG | - | chr1_2:39925151-39925170 | Msa0070180:intron | 25.0% |
| ! | AACTTTGTAATTGTGCTAAT+AGG | - | chr1_2:39925530-39925549 | Msa0070180:CDS | 25.0% |
| !!! | AGTAAAACTGGTTTTTGTTA+GGG | - | chr1_2:39925678-39925697 | Msa0070180:intron | 25.0% |
| !!! | ATTTTGTTCAATGCTTTGTT+CGG | - | chr1_2:39925737-39925756 | Msa0070180:intron | 25.0% |
| ! | CATCAATAATATCCTTGAAT+CGG | + | chr1_2:39925782-39925801 | None:intergenic | 25.0% |
| ! | ATTCAAGGATATTATTGATG+AGG | - | chr1_2:39925782-39925801 | Msa0070180:intron | 25.0% |
| !!! | AGAATATTTCTAGCTTTTGT+TGG | - | chr1_2:39925820-39925839 | Msa0070180:intron | 25.0% |
| ! | AAATTTGCACCAACAAAAAA+GGG | + | chr1_2:39925997-39926016 | None:intergenic | 25.0% |
| ! | TAAATTTGCACCAACAAAAA+AGG | + | chr1_2:39925998-39926017 | None:intergenic | 25.0% |
| ! | TGTTATTGACACTTTAATGT+AGG | - | chr1_2:39926339-39926358 | Msa0070180:intron | 25.0% |
| ! | AAATTGGTAAAAGATAACAC+AGG | + | chr1_2:39926745-39926764 | None:intergenic | 25.0% |
| !!! | ACTATGACTCTTTGTTTTAA+TGG | - | chr1_2:39926912-39926931 | Msa0070180:five_prime_UTR | 25.0% |
| !!! | CTATGACTCTTTGTTTTAAT+GGG | - | chr1_2:39926913-39926932 | Msa0070180:five_prime_UTR | 25.0% |
| CGAAGATGAAGAAATGAAAT+CGG | - | chr1_2:39923194-39923213 | Msa0070180:three_prime_UTR | 30.0% | |
| AATATCAACAACAACAACGA+CGG | - | chr1_2:39923219-39923238 | Msa0070180:three_prime_UTR | 30.0% | |
| TTATTATTAGGTTCTTGGTG+TGG | - | chr1_2:39923358-39923377 | Msa0070180:CDS | 30.0% | |
| !! | TGCTGTGTTACTGTAATTTT+AGG | - | chr1_2:39923490-39923509 | Msa0070180:CDS | 30.0% |
| !! | TTACTGTAATTTTAGGTCTG+AGG | - | chr1_2:39923497-39923516 | Msa0070180:CDS | 30.0% |
| TTTAGTGTAACTACAAGTGT+CGG | + | chr1_2:39923530-39923549 | None:intergenic | 30.0% | |
| AAGTATATGAAGTACGGATA+CGG | + | chr1_2:39923602-39923621 | None:intergenic | 30.0% | |
| !! | GTGGTTCATTTTTCTATTGT+GGG | + | chr1_2:39923833-39923852 | None:intergenic | 30.0% |
| !! | AGTGGTTCATTTTTCTATTG+TGG | + | chr1_2:39923834-39923853 | None:intergenic | 30.0% |
| AATGTATACTTACTCATACC+GGG | + | chr1_2:39923875-39923894 | None:intergenic | 30.0% | |
| !! | TTAGCCCAAATGTTTGTTTT+TGG | - | chr1_2:39923979-39923998 | Msa0070180:intron | 30.0% |
| !! | TAGCCCAAATGTTTGTTTTT+GGG | - | chr1_2:39923980-39923999 | Msa0070180:intron | 30.0% |
| !! | TTCAAGGGTTTTGTGTAATT+TGG | - | chr1_2:39924041-39924060 | Msa0070180:intron | 30.0% |
| CAAAATGTTATCTCCATTCT+CGG | - | chr1_2:39924395-39924414 | Msa0070180:intron | 30.0% | |
| AAAATGTTATCTCCATTCTC+GGG | - | chr1_2:39924396-39924415 | Msa0070180:intron | 30.0% | |
| GATGATCGAATATTTAAGCT+TGG | - | chr1_2:39924663-39924682 | Msa0070180:intron | 30.0% | |
| TGATCGAATATTTAAGCTTG+GGG | - | chr1_2:39924665-39924684 | Msa0070180:intron | 30.0% | |
| ! | GTGTTAACATATTAAGTTGC+TGG | + | chr1_2:39924848-39924867 | None:intergenic | 30.0% |
| CATGACAATTAAAACTGGAA+AGG | - | chr1_2:39924913-39924932 | Msa0070180:intron | 30.0% | |
| ! | TTTTATATCAAAGGCAAGGT+AGG | - | chr1_2:39924988-39925007 | Msa0070180:intron | 30.0% |
| TTTATATCAAAGGCAAGGTA+GGG | - | chr1_2:39924989-39925008 | Msa0070180:intron | 30.0% | |
| TAGACAGTAGTGTATGTTAT+TGG | - | chr1_2:39925028-39925047 | Msa0070180:intron | 30.0% | |
| AACTAACAAAAGCAATACCA+TGG | + | chr1_2:39925120-39925139 | None:intergenic | 30.0% | |
| ! | ATGTTTAGATCTTTTTGCTC+TGG | - | chr1_2:39925261-39925280 | Msa0070180:intron | 30.0% |
| ! | GAACGAAATATTGTCATTTC+AGG | - | chr1_2:39925312-39925331 | Msa0070180:intron | 30.0% |
| !! | CGTATTTATTTCTGAAAACC+AGG | - | chr1_2:39925380-39925399 | Msa0070180:intron | 30.0% |
| TTTCAGAACATTGTACAAGA+AGG | - | chr1_2:39925440-39925459 | Msa0070180:intron | 30.0% | |
| !! | AGCATTTTGATGAGTAAAAC+TGG | - | chr1_2:39925666-39925685 | Msa0070180:intron | 30.0% |
| !!! | GAGTAAAACTGGTTTTTGTT+AGG | - | chr1_2:39925677-39925696 | Msa0070180:intron | 30.0% |
| TGAACAAAATAACCTGCAAA+GGG | + | chr1_2:39925727-39925746 | None:intergenic | 30.0% | |
| TTGAACAAAATAACCTGCAA+AGG | + | chr1_2:39925728-39925747 | None:intergenic | 30.0% | |
| AATTTGTCATGTGACTGTTA+AGG | - | chr1_2:39925847-39925866 | Msa0070180:intron | 30.0% | |
| TCACCAAGTTCAAAAGAAAA+CGG | - | chr1_2:39926089-39926108 | Msa0070180:intron | 30.0% | |
| ! | AAAAGAAAGCGTACAAGAAA+TGG | - | chr1_2:39926233-39926252 | Msa0070180:intron | 30.0% |
| ! | AAAGAAAGCGTACAAGAAAT+GGG | - | chr1_2:39926234-39926253 | Msa0070180:intron | 30.0% |
| TAAGTTTATCAAGCAGAGTT+TGG | - | chr1_2:39926313-39926332 | Msa0070180:intron | 30.0% | |
| AATCTTCTACAGATCAAGTA+AGG | - | chr1_2:39926382-39926401 | Msa0070180:intron | 30.0% | |
| ! | ATAGCATACAGATCTGTTTT+TGG | + | chr1_2:39926410-39926429 | None:intergenic | 30.0% |
| TCGTCTCTAATCTCAAAATA+TGG | - | chr1_2:39926479-39926498 | Msa0070180:CDS | 30.0% | |
| TCTCTAATCTCAAAATATGG+TGG | - | chr1_2:39926482-39926501 | Msa0070180:CDS | 30.0% | |
| AAGAAACAGACTATACAGAA+AGG | + | chr1_2:39926610-39926629 | None:intergenic | 30.0% | |
| ! | TGTATAGTCTGTTTCTTTCA+TGG | - | chr1_2:39926613-39926632 | Msa0070180:intron | 30.0% |
| ! | GGAATTCTCAACTCTTTTTA+AGG | - | chr1_2:39926662-39926681 | Msa0070180:intron | 30.0% |
| ! | CTATTTTCGTTTACAAGATG+AGG | - | chr1_2:39926698-39926717 | Msa0070180:CDS | 30.0% |
| ! | AACACAGGCTTCAAATTTTT+AGG | + | chr1_2:39926730-39926749 | None:intergenic | 30.0% |
| AGAACATTGGCAACTTAAAT+TGG | + | chr1_2:39926761-39926780 | None:intergenic | 30.0% | |
| !! | ATTTAAGTTGCCAATGTTCT+TGG | - | chr1_2:39926761-39926780 | Msa0070180:CDS | 30.0% |
| AGAGTAAGAAGAAGAGAAGT+AGG | - | chr1_2:39923154-39923173 | Msa0070180:three_prime_UTR | 35.0% | |
| GAGTAAGAAGAAGAGAAGTA+GGG | - | chr1_2:39923155-39923174 | Msa0070180:three_prime_UTR | 35.0% | |
| CATTTCTTCATCTTCGTTGT+CGG | + | chr1_2:39923190-39923209 | None:intergenic | 35.0% | |
| !!! | GAGTGAGTTTTGGTTTTGAT+CGG | + | chr1_2:39923253-39923272 | None:intergenic | 35.0% |
| ! | AAAGAAGGCGTATCACAAAT+TGG | - | chr1_2:39923406-39923425 | Msa0070180:CDS | 35.0% |
| TAATCGTACCTATGCAACAT+AGG | + | chr1_2:39923689-39923708 | None:intergenic | 35.0% | |
| ATGTTGCATAGGTACGATTA+CGG | - | chr1_2:39923689-39923708 | Msa0070180:CDS | 35.0% | |
| TCTATTGTGGGTGAAAATTG+TGG | + | chr1_2:39923821-39923840 | None:intergenic | 35.0% | |
| !!! | AGCCCAAATGTTTGTTTTTG+GGG | - | chr1_2:39923981-39924000 | Msa0070180:intron | 35.0% |
| TCGCAAACAAAGAAACACTT+CGG | + | chr1_2:39924188-39924207 | None:intergenic | 35.0% | |
| ! | TTGTTCCTTGTTTCATTTGC+AGG | - | chr1_2:39924346-39924365 | Msa0070180:CDS | 35.0% |
| AAATGTTATCTCCATTCTCG+GGG | - | chr1_2:39924397-39924416 | Msa0070180:intron | 35.0% | |
| ! | CGTGTCATAGTGTTGAAATA+AGG | - | chr1_2:39924641-39924660 | Msa0070180:intron | 35.0% |
| GATCGAATATTTAAGCTTGG+GGG | - | chr1_2:39924666-39924685 | Msa0070180:intron | 35.0% | |
| ATCGAATATTTAAGCTTGGG+GGG | - | chr1_2:39924667-39924686 | Msa0070180:intron | 35.0% | |
| !! | ACTAAGTTCTGAAGTTGTGT+TGG | - | chr1_2:39924762-39924781 | Msa0070180:intron | 35.0% |
| !! | CTGAAGTTGTGTTGGTATTT+TGG | - | chr1_2:39924770-39924789 | Msa0070180:intron | 35.0% |
| !!! | CCAGTTTTAATTGTCATGAC+CGG | + | chr1_2:39924911-39924930 | None:intergenic | 35.0% |
| ! | GTGTATGTTATTGGTTGAGT+TGG | - | chr1_2:39925037-39925056 | Msa0070180:intron | 35.0% |
| !! | ATGTTATTGGTTGAGTTGGT+TGG | - | chr1_2:39925041-39925060 | Msa0070180:intron | 35.0% |
| ! | GAGTTTGAAGCAAACTATAG+AGG | - | chr1_2:39925573-39925592 | Msa0070180:intron | 35.0% |
| TAGACTTTACAAGGAATGCA+AGG | - | chr1_2:39925623-39925642 | Msa0070180:intron | 35.0% | |
| AGACTTTACAAGGAATGCAA+GGG | - | chr1_2:39925624-39925643 | Msa0070180:intron | 35.0% | |
| AATGCAAGGGTAATATGAAC+AGG | - | chr1_2:39925637-39925656 | Msa0070180:intron | 35.0% | |
| GGGAATATCAAAGTCAAAAC+TGG | + | chr1_2:39925707-39925726 | None:intergenic | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr1_2:39925898-39925917 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr1_2:39925897-39925916 | Msa0070180:intron | 35.0% | |
| ! | CTTCCGTTTTCTTTTGAACT+TGG | + | chr1_2:39926095-39926114 | None:intergenic | 35.0% |
| !! | TTTAGTTCTCCTGCAGATAT+AGG | + | chr1_2:39926211-39926230 | None:intergenic | 35.0% |
| TATATCTGCAGGAGAACTAA+AGG | - | chr1_2:39926210-39926229 | Msa0070180:intron | 35.0% | |
| ! | TACTTTTGCTTCCTTCGTAA+AGG | + | chr1_2:39926295-39926314 | None:intergenic | 35.0% |
| ACGAGAACATAGAATCAAAC+CGG | + | chr1_2:39926463-39926482 | None:intergenic | 35.0% | |
| !!! | TAGGCTTTTTTGAGGATCTT+CGG | + | chr1_2:39926568-39926587 | None:intergenic | 35.0% |
| GTCACTTCACTATTGTTAGT+TGG | - | chr1_2:39926641-39926660 | Msa0070180:intron | 35.0% | |
| !!! | CTCTTTTTAAGGCTGAACAT+CGG | - | chr1_2:39926673-39926692 | Msa0070180:CDS | 35.0% |
| !!! | TCTTTTTAAGGCTGAACATC+GGG | - | chr1_2:39926674-39926693 | Msa0070180:CDS | 35.0% |
| CATAAACTCACCAAGAACAT+TGG | + | chr1_2:39926774-39926793 | None:intergenic | 35.0% | |
| CAATGTTCTTGGTGAGTTTA+TGG | - | chr1_2:39926772-39926791 | Msa0070180:CDS | 35.0% | |
| TAGCTTCATTCAGACTCAAA+TGG | + | chr1_2:39926863-39926882 | None:intergenic | 35.0% | |
| ! | ATGTTGTGCGTTTGAGTTTA+TGG | + | chr1_2:39926886-39926905 | None:intergenic | 35.0% |
| !!! | GTTTTGGTTTTGATCGGAAC+TGG | + | chr1_2:39923247-39923266 | None:intergenic | 40.0% |
| AAACCAAAACTCACTCTACC+AGG | - | chr1_2:39923257-39923276 | Msa0070180:three_prime_UTR | 40.0% | |
| ! | TTACCTGGTAGAGTGAGTTT+TGG | + | chr1_2:39923263-39923282 | None:intergenic | 40.0% |
| ! | GTTGAAGTAAGGTACTTACC+TGG | + | chr1_2:39923278-39923297 | None:intergenic | 40.0% |
| GTTTAGTGTCTCTGTCTGTT+AGG | - | chr1_2:39923663-39923682 | Msa0070180:CDS | 40.0% | |
| AAGCATGGGTACTTGTGAAA+AGG | + | chr1_2:39923910-39923929 | None:intergenic | 40.0% | |
| !! | TGTCAGAACCTTTGAAGCAT+GGG | + | chr1_2:39923924-39923943 | None:intergenic | 40.0% |
| !! | TTGTCAGAACCTTTGAAGCA+TGG | + | chr1_2:39923925-39923944 | None:intergenic | 40.0% |
| ! | CTTCAAAGGTTCTGACAAGT+GGG | - | chr1_2:39923927-39923946 | Msa0070180:intron | 40.0% |
| CGCCCCAAAAACAAACATTT+GGG | + | chr1_2:39923986-39924005 | None:intergenic | 40.0% | |
| TCGCCCCAAAAACAAACATT+TGG | + | chr1_2:39923987-39924006 | None:intergenic | 40.0% | |
| TGCCTACATCTCTGAGTATA+GGG | + | chr1_2:39924145-39924164 | None:intergenic | 40.0% | |
| ATGCCTACATCTCTGAGTAT+AGG | + | chr1_2:39924146-39924165 | None:intergenic | 40.0% | |
| AGTTTGACAAGGAGGCTATA+AGG | + | chr1_2:39924258-39924277 | None:intergenic | 40.0% | |
| ACACCTGAAAGAGTTTGACA+AGG | + | chr1_2:39924269-39924288 | None:intergenic | 40.0% | |
| AGCTTCCTGCAAATGAAACA+AGG | + | chr1_2:39924354-39924373 | None:intergenic | 40.0% | |
| ! | TTTTTCTTCATCCCCGAGAA+TGG | + | chr1_2:39924411-39924430 | None:intergenic | 40.0% |
| TTCTCGGGGATGAAGAAAAA+CGG | - | chr1_2:39924411-39924430 | Msa0070180:intron | 40.0% | |
| CCGGTCATGACAATTAAAAC+TGG | - | chr1_2:39924908-39924927 | Msa0070180:intron | 40.0% | |
| !! | TTGAGTTGGTTGGTTGTGAA+AGG | - | chr1_2:39925051-39925070 | Msa0070180:intron | 40.0% |
| !! | TGAGTTGGTTGGTTGTGAAA+GGG | - | chr1_2:39925052-39925071 | Msa0070180:intron | 40.0% |
| TGCTCTGGTAACTGTAGTTA+AGG | - | chr1_2:39925276-39925295 | Msa0070180:intron | 40.0% | |
| AGGATATTCTAGCATTGTCC+TGG | - | chr1_2:39925332-39925351 | Msa0070180:intron | 40.0% | |
| ! | ACAAGCATATACAAGGCACT+AGG | + | chr1_2:39925497-39925516 | None:intergenic | 40.0% |
| GCCTTGTATATGCTTGTTCT+CGG | - | chr1_2:39925500-39925519 | Msa0070180:CDS | 40.0% | |
| ACCGAGAACAAGCATATACA+AGG | + | chr1_2:39925504-39925523 | None:intergenic | 40.0% | |
| GACTTTGATATTCCCTTTGC+AGG | - | chr1_2:39925712-39925731 | Msa0070180:intron | 40.0% | |
| ATTGATGAGGCTATAGCTTC+TGG | - | chr1_2:39925795-39925814 | Msa0070180:intron | 40.0% | |
| TCATGTGACTGTTAAGGTCA+CGG | - | chr1_2:39925853-39925872 | Msa0070180:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr1_2:39925891-39925910 | Msa0070180:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr1_2:39925892-39925911 | Msa0070180:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1_2:39925923-39925942 | Msa0070180:intron | 40.0% | |
| !! | GCTTGTTTTCCTATATCTGC+AGG | - | chr1_2:39926199-39926218 | Msa0070180:intron | 40.0% |
| ! | TTCCTTCGTAAAGGACTAGT+TGG | + | chr1_2:39926286-39926305 | None:intergenic | 40.0% |
| TATCAAAACGACGAGATGAG+AGG | - | chr1_2:39926432-39926451 | Msa0070180:intron | 40.0% | |
| CGAAGCTACACAGAAAAAGA+TGG | - | chr1_2:39926538-39926557 | Msa0070180:CDS | 40.0% | |
| GAAGATCCTCAAAAAAGCCT+AGG | - | chr1_2:39926567-39926586 | Msa0070180:intron | 40.0% | |
| GACTATACAGAAAGGCAAGT+TGG | + | chr1_2:39926602-39926621 | None:intergenic | 40.0% | |
| !!! | CTTTTTAAGGCTGAACATCG+GGG | - | chr1_2:39926675-39926694 | Msa0070180:CDS | 40.0% |
| TGTTACTCATTCTGCCATCA+TGG | - | chr1_2:39926822-39926841 | Msa0070180:five_prime_UTR | 40.0% | |
| AAATTCATGCACCTCCATGA+TGG | + | chr1_2:39926839-39926858 | None:intergenic | 40.0% | |
| CTTCATCCTGATAAGAACCC+TGG | - | chr1_2:39923437-39923456 | Msa0070180:CDS | 45.0% | |
| TGATCACCAGGGTTCTTATC+AGG | + | chr1_2:39923446-39923465 | None:intergenic | 45.0% | |
| TGATAAGAACCCTGGTGATC+AGG | - | chr1_2:39923445-39923464 | Msa0070180:CDS | 45.0% | |
| AGAAACTGACCTGATCACCA+GGG | + | chr1_2:39923457-39923476 | None:intergenic | 45.0% | |
| ATGAAGTACGGATACGGACA+CGG | + | chr1_2:39923596-39923615 | None:intergenic | 45.0% | |
| CTGTTAGGCCTATGTTGCAT+AGG | - | chr1_2:39923678-39923697 | Msa0070180:CDS | 45.0% | |
| CACAAGTACCCATGCTTCAA+AGG | - | chr1_2:39923913-39923932 | Msa0070180:intron | 45.0% | |
| ! | GCTTCAAAGGTTCTGACAAG+TGG | - | chr1_2:39923926-39923945 | Msa0070180:intron | 45.0% |
| !!! | ATGTTTGTTTTTGGGGCGAG+TGG | - | chr1_2:39923988-39924007 | Msa0070180:intron | 45.0% |
| !!! | TGTTTGTTTTTGGGGCGAGT+GGG | - | chr1_2:39923989-39924008 | Msa0070180:intron | 45.0% |
| AAACCCTTGAACCGTACCAT+GGG | + | chr1_2:39924032-39924051 | None:intergenic | 45.0% | |
| AAAACCCTTGAACCGTACCA+TGG | + | chr1_2:39924033-39924052 | None:intergenic | 45.0% | |
| GTCCCTATACTCAGAGATGT+AGG | - | chr1_2:39924140-39924159 | Msa0070180:CDS | 45.0% | |
| CTCAGAGATGTAGGCATACT+TGG | - | chr1_2:39924149-39924168 | Msa0070180:CDS | 45.0% | |
| CCTGAAAGAGTTTGACAAGG+AGG | + | chr1_2:39924266-39924285 | None:intergenic | 45.0% | |
| CCTCCTTGTCAAACTCTTTC+AGG | - | chr1_2:39924263-39924282 | Msa0070180:intron | 45.0% | |
| AAAATGCAGCTCAAGTGGTG+TGG | + | chr1_2:39924302-39924321 | None:intergenic | 45.0% | |
| ! | ACCACTTGAGCTGCATTTTG+TGG | - | chr1_2:39924303-39924322 | Msa0070180:CDS | 45.0% |
| ACCACAAAATGCAGCTCAAG+TGG | + | chr1_2:39924307-39924326 | None:intergenic | 45.0% | |
| ! | ACTTGAGCTGCATTTTGTGG+TGG | - | chr1_2:39924306-39924325 | Msa0070180:CDS | 45.0% |
| TCTCGGGGATGAAGAAAAAC+GGG | - | chr1_2:39924412-39924431 | Msa0070180:intron | 45.0% | |
| CGGGCACTTTATGATGAAAC+TGG | - | chr1_2:39924431-39924450 | Msa0070180:intron | 45.0% | |
| TCAAAGGCAAGGTAGGGAAA+AGG | - | chr1_2:39924995-39925014 | Msa0070180:intron | 45.0% | |
| GGTCACTGAAGCTGATATTG+AGG | - | chr1_2:39925551-39925570 | Msa0070180:CDS | 45.0% | |
| CATGTGACTGTTAAGGTCAC+GGG | - | chr1_2:39925854-39925873 | Msa0070180:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_2:39925887-39925906 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_2:39925919-39925938 | Msa0070180:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_2:39925922-39925941 | Msa0070180:intron | 45.0% | |
| ACCAACAAAAAAGGGCAACC+CGG | + | chr1_2:39925989-39926008 | None:intergenic | 45.0% | |
| !! | CTTCGTAAAGGACTAGTTGG+CGG | + | chr1_2:39926283-39926302 | None:intergenic | 45.0% |
| AATTCCTCTTCAGAGGGTTC+GGG | + | chr1_2:39926518-39926537 | None:intergenic | 45.0% | |
| GAATTCCTCTTCAGAGGGTT+CGG | + | chr1_2:39926519-39926538 | None:intergenic | 45.0% | |
| GCTTCGAATTCCTCTTCAGA+GGG | + | chr1_2:39926524-39926543 | None:intergenic | 45.0% | |
| AGCTTCGAATTCCTCTTCAG+AGG | + | chr1_2:39926525-39926544 | None:intergenic | 45.0% | |
| !!! | CTTTCGCCTAGGCTTTTTTG+AGG | + | chr1_2:39926576-39926595 | None:intergenic | 45.0% |
| !! | CAAGTTGGTTACTTTCGCCT+AGG | + | chr1_2:39926587-39926606 | None:intergenic | 45.0% |
| TACTCATTCTGCCATCATGG+AGG | - | chr1_2:39926825-39926844 | Msa0070180:five_prime_UTR | 45.0% | |
| !! | TTAAATTTAAATTAATAACA+AGG | + | chr1_2:39923012-39923031 | None:intergenic | 5.0% |
| !!! | TATTTATTTTTTTATATCAA+AGG | - | chr1_2:39924979-39924998 | Msa0070180:intron | 5.0% |
| AGAGTGATGGCAGAAGCGAA+AGG | - | chr1_2:39922967-39922986 | Msa0070180:three_prime_UTR | 50.0% | |
| GAGAAACTGACCTGATCACC+AGG | + | chr1_2:39923458-39923477 | None:intergenic | 50.0% | |
| TGAAGTACGGATACGGACAC+GGG | + | chr1_2:39923595-39923614 | None:intergenic | 50.0% | |
| ACTCATACCGGGTACGAGTA+CGG | + | chr1_2:39923864-39923883 | None:intergenic | 50.0% | |
| ! | AAAGGTTCTGACAAGTGGGC+AGG | - | chr1_2:39923931-39923950 | Msa0070180:intron | 50.0% |
| ! | AAGGTTCTGACAAGTGGGCA+GGG | - | chr1_2:39923932-39923951 | Msa0070180:intron | 50.0% |
| !!! | GTTTGTTTTTGGGGCGAGTG+GGG | - | chr1_2:39923990-39924009 | Msa0070180:intron | 50.0% |
| AACCCTTGAACCGTACCATG+GGG | + | chr1_2:39924031-39924050 | None:intergenic | 50.0% | |
| AGGCATACTTGGCCGCAATT+CGG | - | chr1_2:39924160-39924179 | Msa0070180:CDS | 50.0% | |
| !! | AACACTTCGGTGCCGAATTG+CGG | + | chr1_2:39924175-39924194 | None:intergenic | 50.0% |
| CATAGGATCAGCACCTAGCA+AGG | + | chr1_2:39925078-39925097 | None:intergenic | 50.0% | |
| !! | CTTGCTAGGTGCTGATCCTA+TGG | - | chr1_2:39925076-39925095 | Msa0070180:intron | 50.0% |
| !! | CTAGGTGCTGATCCTATGGA+GGG | - | chr1_2:39925080-39925099 | Msa0070180:intron | 50.0% |
| CTGAGCTGTCAACAATGTCC+AGG | + | chr1_2:39925353-39925372 | None:intergenic | 50.0% | |
| TCTGAAAACCAGGACCTTGC+AGG | - | chr1_2:39925390-39925409 | Msa0070180:intron | 50.0% | |
| CCTGAACTACATCTCCTGCA+AGG | + | chr1_2:39925407-39925426 | None:intergenic | 50.0% | |
| CCTTGCAGGAGATGTAGTTC+AGG | - | chr1_2:39925404-39925423 | Msa0070180:intron | 50.0% | |
| AATCGGTGCGAGTCGAGTTT+AGG | + | chr1_2:39925765-39925784 | None:intergenic | 50.0% | |
| !!! | ACCGGGTTGCCCTTTTTTGT+TGG | - | chr1_2:39925985-39926004 | Msa0070180:intron | 50.0% |
| !! | TAAAGGACTAGTTGGCGGCT+TGG | + | chr1_2:39926278-39926297 | None:intergenic | 50.0% |
| CGCCAACTAGTCCTTTACGA+AGG | - | chr1_2:39926281-39926300 | Msa0070180:intron | 50.0% | |
| GACGAGATGAGAGGAAAGAC+CGG | - | chr1_2:39926441-39926460 | Msa0070180:intron | 50.0% | |
| GTGATGGCAGAAGCGAAAGG+CGG | - | chr1_2:39922970-39922989 | Msa0070180:three_prime_UTR | 55.0% | |
| TGATGGCAGAAGCGAAAGGC+GGG | - | chr1_2:39922971-39922990 | Msa0070180:three_prime_UTR | 55.0% | |
| TACGAGTACGGTACTCGCAG+TGG | + | chr1_2:39923852-39923871 | None:intergenic | 55.0% | |
| GGGACAAAACCCCCATGGTA+CGG | - | chr1_2:39924018-39924037 | Msa0070180:intron | 55.0% | |
| AACCCCCATGGTACGGTTCA+AGG | - | chr1_2:39924025-39924044 | Msa0070180:intron | 55.0% | |
| ACCCCCATGGTACGGTTCAA+GGG | - | chr1_2:39924026-39924045 | Msa0070180:intron | 55.0% | |
| ACCCTTGAACCGTACCATGG+GGG | + | chr1_2:39924030-39924049 | None:intergenic | 55.0% | |
| GGTTGTGAAAGGGCCTTGCT+AGG | - | chr1_2:39925062-39925081 | Msa0070180:intron | 55.0% | |
| !! | GCTAGGTGCTGATCCTATGG+AGG | - | chr1_2:39925079-39925098 | Msa0070180:intron | 55.0% |
| CCACACAGATGACCCTCCAT+AGG | + | chr1_2:39925095-39925114 | None:intergenic | 55.0% | |
| CCTATGGAGGGTCATCTGTG+TGG | - | chr1_2:39925092-39925111 | Msa0070180:intron | 55.0% | |
| GGGTCATCTGTGTGGTTCCA+TGG | - | chr1_2:39925100-39925119 | Msa0070180:intron | 55.0% | |
| CTACATCTCCTGCAAGGTCC+TGG | + | chr1_2:39925401-39925420 | None:intergenic | 55.0% | |
| !! | ACTCGACTCGCACCGATTCA+AGG | - | chr1_2:39925767-39925786 | Msa0070180:intron | 55.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1_2:39925866-39925885 | Msa0070180:intron | 55.0% | |
| ACGGATACGGACACGGGATG+CGG | + | chr1_2:39923589-39923608 | None:intergenic | 60.0% | |
| ! | GCGAGTACCGTACTCGTACC+CGG | - | chr1_2:39923854-39923873 | Msa0070180:intron | 60.0% |
| !!! | TTTTTGGGGCGAGTGGGGTG+TGG | - | chr1_2:39923995-39924014 | Msa0070180:intron | 60.0% |
| !!! | TTTTGGGGCGAGTGGGGTGT+GGG | - | chr1_2:39923996-39924015 | Msa0070180:intron | 60.0% |
| TGTGGGGGACAAAACCCCCA+TGG | - | chr1_2:39924013-39924032 | Msa0070180:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_2:39925935-39925954 | Msa0070180:intron | 60.0% |
| CTTCAGAGGGTTCGGGCACA+TGG | + | chr1_2:39926511-39926530 | None:intergenic | 60.0% | |
| ! | TGTGCCCGAACCCTCTGAAG+AGG | - | chr1_2:39926511-39926530 | Msa0070180:CDS | 60.0% |
| ! | TTTGGGGCGAGTGGGGTGTG+GGG | - | chr1_2:39923997-39924016 | Msa0070180:intron | 65.0% |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_2:39925937-39925956 | None:intergenic | 65.0% | |
| CTGAAGCTCCCGCGTACGCA+GGG | + | chr1_2:39925962-39925981 | None:intergenic | 65.0% | |
| ACTGAAGCTCCCGCGTACGC+AGG | + | chr1_2:39925963-39925982 | None:intergenic | 65.0% | |
| ACGCGGGAGCTTCAGTGCAC+CGG | - | chr1_2:39925967-39925986 | Msa0070180:intron | 65.0% | |
| TTGGGGCGAGTGGGGTGTGG+GGG | - | chr1_2:39923998-39924017 | Msa0070180:intron | 70.0% | |
| CGTACGCAGGGTCCGGGAAG+GGG | + | chr1_2:39925950-39925969 | None:intergenic | 70.0% | |
| GCGTACGCAGGGTCCGGGAA+GGG | + | chr1_2:39925951-39925970 | None:intergenic | 70.0% | |
| CTTCCCGGACCCTGCGTACG+CGG | - | chr1_2:39925950-39925969 | Msa0070180:intron | 70.0% | |
| TTCCCGGACCCTGCGTACGC+GGG | - | chr1_2:39925951-39925970 | Msa0070180:intron | 70.0% | |
| CGCGGGAGCTTCAGTGCACC+GGG | - | chr1_2:39925968-39925987 | Msa0070180:intron | 70.0% | |
| CGCGTACGCAGGGTCCGGGA+AGG | + | chr1_2:39925952-39925971 | None:intergenic | 75.0% | |
| CTCCCGCGTACGCAGGGTCC+GGG | + | chr1_2:39925956-39925975 | None:intergenic | 75.0% | |
| GCTCCCGCGTACGCAGGGTC+CGG | + | chr1_2:39925957-39925976 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 39922961 | 39926982 | 39922961 | ID=Msa0070180;Name=Msa0070180 |
| chr1_2 | mRNA | 39922961 | 39926982 | 39922961 | ID=Msa0070180-mRNA-1;Parent=Msa0070180;Name=Msa0070180-mRNA-1;_AED=0.13;_eAED=0.13;_QI=186|1|1|1|1|1|8|384|292 |
| chr1_2 | exon | 39922961 | 39923549 | 39922961 | ID=Msa0070180-mRNA-1:exon:12290;Parent=Msa0070180-mRNA-1 |
| chr1_2 | exon | 39923632 | 39923722 | 39923632 | ID=Msa0070180-mRNA-1:exon:12289;Parent=Msa0070180-mRNA-1 |
| chr1_2 | exon | 39924127 | 39924209 | 39924127 | ID=Msa0070180-mRNA-1:exon:12288;Parent=Msa0070180-mRNA-1 |
| chr1_2 | exon | 39924285 | 39924391 | 39924285 | ID=Msa0070180-mRNA-1:exon:12287;Parent=Msa0070180-mRNA-1 |
| chr1_2 | exon | 39924482 | 39924541 | 39924482 | ID=Msa0070180-mRNA-1:exon:12286;Parent=Msa0070180-mRNA-1 |
| chr1_2 | exon | 39925474 | 39925575 | 39925474 | ID=Msa0070180-mRNA-1:exon:12285;Parent=Msa0070180-mRNA-1 |
| chr1_2 | exon | 39926477 | 39926575 | 39926477 | ID=Msa0070180-mRNA-1:exon:12284;Parent=Msa0070180-mRNA-1 |
| chr1_2 | exon | 39926665 | 39926982 | 39926665 | ID=Msa0070180-mRNA-1:exon:12283;Parent=Msa0070180-mRNA-1 |
| chr1_2 | five_prime_UTR | 39926797 | 39926982 | 39926797 | ID=Msa0070180-mRNA-1:five_prime_utr;Parent=Msa0070180-mRNA-1 |
| chr1_2 | CDS | 39926665 | 39926796 | 39926665 | ID=Msa0070180-mRNA-1:cds;Parent=Msa0070180-mRNA-1 |
| chr1_2 | CDS | 39926477 | 39926575 | 39926477 | ID=Msa0070180-mRNA-1:cds;Parent=Msa0070180-mRNA-1 |
| chr1_2 | CDS | 39925474 | 39925575 | 39925474 | ID=Msa0070180-mRNA-1:cds;Parent=Msa0070180-mRNA-1 |
| chr1_2 | CDS | 39924482 | 39924541 | 39924482 | ID=Msa0070180-mRNA-1:cds;Parent=Msa0070180-mRNA-1 |
| chr1_2 | CDS | 39924285 | 39924391 | 39924285 | ID=Msa0070180-mRNA-1:cds;Parent=Msa0070180-mRNA-1 |
| chr1_2 | CDS | 39924127 | 39924209 | 39924127 | ID=Msa0070180-mRNA-1:cds;Parent=Msa0070180-mRNA-1 |
| chr1_2 | CDS | 39923632 | 39923722 | 39923632 | ID=Msa0070180-mRNA-1:cds;Parent=Msa0070180-mRNA-1 |
| chr1_2 | CDS | 39923345 | 39923549 | 39923345 | ID=Msa0070180-mRNA-1:cds;Parent=Msa0070180-mRNA-1 |
| chr1_2 | three_prime_UTR | 39922961 | 39923344 | 39922961 | ID=Msa0070180-mRNA-1:three_prime_utr;Parent=Msa0070180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
