AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183650 MtrunA17_Chr1g0210861 86.765 136 15 3 4 139 5 137 8.69e-66 205
Msa0183650 MtrunA17_Chr1g0210861 96.667 90 3 0 137 226 207 296 2.52e-56 181
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183650 AT4G24175.1 49.412 85 42 1 143 226 217 301 1.11e-20 88.6
Msa0183650 AT4G24175.1 51.429 70 27 2 72 135 67 135 1.51e-12 65.9
Msa0183650 AT4G24175.2 53.125 64 25 2 76 135 73 135 1.28e-12 65.5

Find 57 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACCATGCATTGTTTAAT+TGG 0.131679 1_4:-72617333 Msa0183650:three_prime_UTR
AAGCAAAACGTGCTGTTAAA+TGG 0.180888 1_4:-72620383 Msa0183650:CDS
CTTAAGTATGCGTTTGATTT+GGG 0.220486 1_4:+72620332 None:intergenic
GGGTTGCAGGGTGGTTTCTT+TGG 0.241314 1_4:-72620232 Msa0183650:intron
TTAATAACTAGAATAGTTAA+TGG 0.246308 1_4:-72617283 Msa0183650:three_prime_UTR
TTTAATTGGGATACATGATA+TGG 0.250940 1_4:-72617319 Msa0183650:three_prime_UTR
ACTTAAGTATGCGTTTGATT+TGG 0.270394 1_4:+72620331 None:intergenic
TAAGAGCTTCAAAGACAATT+TGG 0.326397 1_4:+72620208 None:intergenic
TGAAGCTCTTATGTTGGTTA+AGG 0.347145 1_4:-72620196 Msa0183650:intron
TTGAACTGAATAAACTTCAT+TGG 0.358907 1_4:+72618056 None:intergenic
CGTATCTTTGTGGATTGTTC+TGG 0.359479 1_4:+72620528 None:intergenic
AATGAAGTTTATTCAGTTCA+AGG 0.362430 1_4:-72618054 Msa0183650:CDS
CAAGTAACAAGGTGGTTTGA+TGG 0.384351 1_4:-72618105 Msa0183650:CDS
AAGTCGAGAAAGCAGAGATT+AGG 0.387346 1_4:-72617426 Msa0183650:CDS
AGCAAAACGTGCTGTTAAAT+GGG 0.390825 1_4:-72620382 Msa0183650:CDS
TAACCATGCATTGTTTAATT+GGG 0.393245 1_4:-72617332 Msa0183650:three_prime_UTR
AGTCGAGAAAGCAGAGATTA+GGG 0.396363 1_4:-72617425 Msa0183650:CDS
GTTACTTGACTATCATCATA+AGG 0.403754 1_4:+72618120 None:intergenic
AATTTAGTAGTGGAAGAAGT+AGG 0.427733 1_4:+72620594 None:intergenic
TTCTTCTTCTTCCTCGGGAG+CGG 0.442048 1_4:+72620446 None:intergenic
TTCTTCTTCCTCGGGAGCGG+TGG 0.451245 1_4:+72620449 None:intergenic
CTTCACGCTTCAATTGGTTG+CGG 0.456802 1_4:+72620403 None:intergenic
GATTGTTCTGGTGATGATGT+TGG 0.469722 1_4:+72620540 None:intergenic
TGAGCCAACAAGTAGTATTA+CGG 0.477051 1_4:-72620662 Msa0183650:CDS
TTTGATTTGGGGAGGAGAGA+AGG 0.481642 1_4:+72620344 None:intergenic
AGCAGAGATTAGGGCTAAGA+AGG 0.485364 1_4:-72617416 Msa0183650:CDS
TGGAAGAAGTAGGGTGGTGG+TGG 0.488930 1_4:+72620604 None:intergenic
AGAGAAACGACGTATCTTTG+TGG 0.489110 1_4:+72620518 None:intergenic
AGCCATGGCCAATGTCTTAG+AGG 0.494965 1_4:+72620639 None:intergenic
TATTACGGCCTCTAAGACAT+TGG 0.496331 1_4:-72620647 Msa0183650:CDS
GAGGCCGTAATACTACTTGT+TGG 0.504889 1_4:+72620658 None:intergenic
ATTTAGTAGTGGAAGAAGTA+GGG 0.513954 1_4:+72620595 None:intergenic
TCTTCTTCCTCGGGAGCGGT+GGG 0.518718 1_4:+72620450 None:intergenic
TTTGCAGGAGTTGAGAAAGC+TGG 0.520673 1_4:-72617506 Msa0183650:intron
TGTCTTTGAAGCTCTTATGT+TGG 0.520855 1_4:-72620202 Msa0183650:CDS
AGGTGTCGAGTATGATCGCC+AGG 0.526328 1_4:-72618034 Msa0183650:intron
ACGTGCTGTTAAATGGGGAA+TGG 0.548665 1_4:-72620376 Msa0183650:CDS
TGGTGAAAGCGCAACAGCCA+TGG 0.562393 1_4:+72620624 None:intergenic
TATCCCAATTAAACAATGCA+TGG 0.568035 1_4:+72617329 None:intergenic
TAGTGGAAGAAGTAGGGTGG+TGG 0.576323 1_4:+72620601 None:intergenic
TTAAGTATGCGTTTGATTTG+GGG 0.578299 1_4:+72620333 None:intergenic
TAGTGCAGAAAATTTAGTAG+TGG 0.582006 1_4:+72620584 None:intergenic
TTCATTACCCACCGCTCCCG+AGG 0.585183 1_4:-72620457 Msa0183650:CDS
CAATATTCTCTGAAAGACTA+CGG 0.592264 1_4:+72617377 None:intergenic
TGCTCAAGAAACGAAGGCTA+CGG 0.598891 1_4:-72617467 Msa0183650:CDS
TAGTAGTGGAAGAAGTAGGG+TGG 0.602128 1_4:+72620598 None:intergenic
GGCCTCTAAGACATTGGCCA+TGG 0.604231 1_4:-72620641 Msa0183650:CDS
AGTATGCGTTTGATTTGGGG+AGG 0.608860 1_4:+72620336 None:intergenic
TTCTCTTTATCTGCATCTCG+CGG 0.612272 1_4:-72620501 Msa0183650:CDS
GAAGGCTACGGATGAAGAAG+AGG 0.613694 1_4:-72617455 Msa0183650:CDS
GTTTGATGGTTTGATCAACA+AGG 0.631366 1_4:-72618091 Msa0183650:CDS
GCAAAACGTGCTGTTAAATG+GGG 0.636327 1_4:-72620381 Msa0183650:CDS
ACTACGGAGAAAACGAGTGA+GGG 0.650965 1_4:+72617393 None:intergenic
GCACTTTGCTCAAGAAACGA+AGG 0.664552 1_4:-72617473 Msa0183650:CDS
GACTACGGAGAAAACGAGTG+AGG 0.672547 1_4:+72617392 None:intergenic
ATGATGATAGTCAAGTAACA+AGG 0.710187 1_4:-72618116 Msa0183650:CDS
ATGATAGTCAAGTAACAAGG+TGG 0.715164 1_4:-72618113 Msa0183650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTTATAATAAAACATTA+TGG + chr1_4:72618690-72618709 None:intergenic 10.0%
!! TTAACACAATAATAAATATT+AGG - chr1_4:72619008-72619027 Msa0183650:intron 10.0%
!! TAACACAATAATAAATATTA+GGG - chr1_4:72619009-72619028 Msa0183650:intron 10.0%
!!! AACAATTTTATTGAAATATT+GGG + chr1_4:72619257-72619276 None:intergenic 10.0%
!! AAATATTAGATTATATTGTA+TGG + chr1_4:72619983-72620002 None:intergenic 10.0%
!! AAAAAATCATATATATTTAG+AGG - chr1_4:72620313-72620332 Msa0183650:intron 10.0%
!!! TTTTTGCTAAATTTTGTTTT+TGG - chr1_4:72617656-72617675 Msa0183650:intron 15.0%
!!! TTTTGCTAAATTTTGTTTTT+GGG - chr1_4:72617657-72617676 Msa0183650:intron 15.0%
!!! TGATGGTTAAAAATTTTATA+GGG - chr1_4:72618914-72618933 Msa0183650:intron 15.0%
!!! TATTGTGTTAAATATGTTTT+AGG + chr1_4:72618999-72619018 None:intergenic 15.0%
!! AACACAATAATAAATATTAG+GGG - chr1_4:72619010-72619029 Msa0183650:intron 15.0%
!!! GAACAATTTTATTGAAATAT+TGG + chr1_4:72619258-72619277 None:intergenic 15.0%
!! TTAATAACTAGAATAGTTAA+TGG - chr1_4:72620626-72620645 Msa0183650:CDS 15.0%
!!! AAGTTGAAACTTTTCAAAAT+GGG + chr1_4:72617638-72617657 None:intergenic 20.0%
!!! AAAGTTGAAACTTTTCAAAA+TGG + chr1_4:72617639-72617658 None:intergenic 20.0%
!! ATTTCAAGATGAAAAAGAAA+AGG + chr1_4:72617745-72617764 None:intergenic 20.0%
!!! AAACAACTATTTTATGCAAT+TGG - chr1_4:72618212-72618231 Msa0183650:intron 20.0%
!! ATAATTAATGCAACACAAAT+TGG + chr1_4:72618276-72618295 None:intergenic 20.0%
!!! TAAGTTGATTAGAATTATTG+TGG - chr1_4:72618359-72618378 Msa0183650:intron 20.0%
!!! ACATGAATTGACTTAAAAAT+AGG - chr1_4:72618882-72618901 Msa0183650:intron 20.0%
!!! CATGAATTGACTTAAAAATA+GGG - chr1_4:72618883-72618902 Msa0183650:intron 20.0%
!!! AAATTTTTAACCATCACTTT+TGG + chr1_4:72618910-72618929 None:intergenic 20.0%
!!! GTGATGGTTAAAAATTTTAT+AGG - chr1_4:72618913-72618932 Msa0183650:intron 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG - chr1_4:72618971-72618990 Msa0183650:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr1_4:72618972-72618991 Msa0183650:intron 20.0%
!!! AAGTTAGTTTGTTTGTTATT+TGG - chr1_4:72619047-72619066 Msa0183650:intron 20.0%
!!! AGTTAGTTTGTTTGTTATTT+GGG - chr1_4:72619048-72619067 Msa0183650:intron 20.0%
!!! TTTTATTGAAATATTGGGAA+AGG + chr1_4:72619252-72619271 None:intergenic 20.0%
!! AAAAGATAAGATACATCATA+AGG + chr1_4:72619746-72619765 None:intergenic 20.0%
!! AAATTTCTTTCTCATTATGA+AGG - chr1_4:72620216-72620235 Msa0183650:CDS 20.0%
! ACACATTTAAATCAGTAAAG+CGG - chr1_4:72617969-72617988 Msa0183650:intron 25.0%
! AAAAATGGTACTATAAGCTA+AGG + chr1_4:72618314-72618333 None:intergenic 25.0%
! TGAATGACTATCAACAAAAA+TGG + chr1_4:72618329-72618348 None:intergenic 25.0%
! ATATAATTTGATCCATGTAG+CGG + chr1_4:72618666-72618685 None:intergenic 25.0%
! AAAACTATCAGAGAAAGATT+TGG + chr1_4:72618737-72618756 None:intergenic 25.0%
!!! ATTGGTCTTCTAATCTTTTT+TGG - chr1_4:72618807-72618826 Msa0183650:intron 25.0%
!!! TTGGTCTTCTAATCTTTTTT+GGG - chr1_4:72618808-72618827 Msa0183650:intron 25.0%
! TAGAGAGTAAAATGAAAAGT+TGG - chr1_4:72618959-72618978 Msa0183650:intron 25.0%
!! TATGTTAGGAACATTTCTTT+TGG + chr1_4:72619326-72619345 None:intergenic 25.0%
! GTGTTTGATTGTATAGTTAA+AGG - chr1_4:72619365-72619384 Msa0183650:intron 25.0%
! TATAGTTAAAGGTGAGTTAA+AGG - chr1_4:72619376-72619395 Msa0183650:intron 25.0%
! GTTAAAGGCAAAATGATTTA+TGG - chr1_4:72619391-72619410 Msa0183650:intron 25.0%
! TTGAGTATAAAAGTTACCTT+TGG - chr1_4:72619452-72619471 Msa0183650:intron 25.0%
!!! TGAAGAATTGAAGTTGATTT+TGG + chr1_4:72619559-72619578 None:intergenic 25.0%
! TAGGAAATTTAGTGCATATT+TGG + chr1_4:72619612-72619631 None:intergenic 25.0%
!! TATCTTTTGAGCATTTTATC+AGG - chr1_4:72619758-72619777 Msa0183650:intron 25.0%
! TTGAACTGAATAAACTTCAT+TGG + chr1_4:72619856-72619875 None:intergenic 25.0%
! AATGAAGTTTATTCAGTTCA+AGG - chr1_4:72619855-72619874 Msa0183650:intron 25.0%
! TCAACCAAGTTTATATTACT+TGG - chr1_4:72620003-72620022 Msa0183650:intron 25.0%
! TTCACCAAGTAATATAAACT+TGG + chr1_4:72620010-72620029 None:intergenic 25.0%
! TCAACCAAGTTTATATTAAC+TGG - chr1_4:72620132-72620151 Msa0183650:intron 25.0%
! TTCACCAGTTAATATAAACT+TGG + chr1_4:72620139-72620158 None:intergenic 25.0%
! TTTATGTGATTCCTATCAAA+TGG - chr1_4:72620160-72620179 Msa0183650:intron 25.0%
!! AAAATATCTTCATCTTTTGC+AGG - chr1_4:72620388-72620407 Msa0183650:CDS 25.0%
! TTAACCATGCATTGTTTAAT+TGG - chr1_4:72620576-72620595 Msa0183650:CDS 25.0%
! TAACCATGCATTGTTTAATT+GGG - chr1_4:72620577-72620596 Msa0183650:CDS 25.0%
! TTTAATTGGGATACATGATA+TGG - chr1_4:72620590-72620609 Msa0183650:CDS 25.0%
! ATTTAGTAGTGGAAGAAGTA+GGG + chr1_4:72617317-72617336 None:intergenic 30.0%
! AATTTAGTAGTGGAAGAAGT+AGG + chr1_4:72617318-72617337 None:intergenic 30.0%
TAGTGCAGAAAATTTAGTAG+TGG + chr1_4:72617328-72617347 None:intergenic 30.0%
!! TTAAGTATGCGTTTGATTTG+GGG + chr1_4:72617579-72617598 None:intergenic 30.0%
! CTTAAGTATGCGTTTGATTT+GGG + chr1_4:72617580-72617599 None:intergenic 30.0%
ACTTAAGTATGCGTTTGATT+TGG + chr1_4:72617581-72617600 None:intergenic 30.0%
!!! AAATTTTGTTTTTGGGTTGC+AGG - chr1_4:72617664-72617683 Msa0183650:intron 30.0%
!!! AATTTTGTTTTTGGGTTGCA+GGG - chr1_4:72617665-72617684 Msa0183650:intron 30.0%
TAAGAGCTTCAAAGACAATT+TGG + chr1_4:72617704-72617723 None:intergenic 30.0%
AATTGTTCTATTTGTGCTTG+TGG - chr1_4:72617768-72617787 Msa0183650:intron 30.0%
GTGAAAGTTTAATGAAGAGA+AGG - chr1_4:72617811-72617830 Msa0183650:intron 30.0%
ATGTACTAAATATCGTCTTG+TGG + chr1_4:72618128-72618147 None:intergenic 30.0%
GTGTTGCATTAATTATGAGT+TGG - chr1_4:72618280-72618299 Msa0183650:intron 30.0%
TGATAGTCATTCAATAGATG+TGG - chr1_4:72618336-72618355 Msa0183650:intron 30.0%
CATACATAAATTGTTGTCTC+AGG - chr1_4:72618423-72618442 Msa0183650:intron 30.0%
ATTAATCCGTCCATTAATTC+CGG + chr1_4:72618471-72618490 None:intergenic 30.0%
CGGATTAATAAAAGCAACAA+AGG - chr1_4:72618482-72618501 Msa0183650:intron 30.0%
CTCCTTACTACATAATCTAT+TGG - chr1_4:72618789-72618808 Msa0183650:intron 30.0%
GACCAATAGATTATGTAGTA+AGG + chr1_4:72618794-72618813 None:intergenic 30.0%
! GTTGTTGTTATGAGTTGTTA+GGG - chr1_4:72619070-72619089 Msa0183650:intron 30.0%
AGGGAAGTTAGTTAGTTATT+TGG - chr1_4:72619089-72619108 Msa0183650:intron 30.0%
GTGCAGAATTGAATAAACAA+AGG + chr1_4:72619280-72619299 None:intergenic 30.0%
TAGACATGAACTCATATGTT+AGG + chr1_4:72619340-72619359 None:intergenic 30.0%
AAGGCAAAATGATTTATGGT+TGG - chr1_4:72619395-72619414 Msa0183650:intron 30.0%
AGTATAAAAGTTACCTTTGG+AGG - chr1_4:72619455-72619474 Msa0183650:intron 30.0%
CAAGTTAGAATCAGTTATAG+AGG - chr1_4:72619500-72619519 Msa0183650:intron 30.0%
! AGGCTAAATCAATTTTTGTC+AGG - chr1_4:72619520-72619539 Msa0183650:intron 30.0%
!! AGGAGATAAAGGTATTTATG+CGG + chr1_4:72619651-72619670 None:intergenic 30.0%
CTTTATCTCCTGTCATATTA+GGG - chr1_4:72619660-72619679 Msa0183650:intron 30.0%
TTTATCTCCTGTCATATTAG+GGG - chr1_4:72619661-72619680 Msa0183650:intron 30.0%
GTTACTTGACTATCATCATA+AGG + chr1_4:72619792-72619811 None:intergenic 30.0%
ATGATGATAGTCAAGTAACA+AGG - chr1_4:72619793-72619812 Msa0183650:intron 30.0%
TTCTGAACAAGACTAATTAC+TGG - chr1_4:72619953-72619972 Msa0183650:intron 30.0%
! CAATATTCTCTGAAAGACTA+CGG + chr1_4:72620535-72620554 None:intergenic 30.0%
TATCCCAATTAAACAATGCA+TGG + chr1_4:72620583-72620602 None:intergenic 30.0%
!!! CCTAGCACAAATATTTTTAG+AGG + chr1_4:72620696-72620715 None:intergenic 30.0%
TGAGCCAACAAGTAGTATTA+CGG - chr1_4:72617247-72617266 Msa0183650:three_prime_UTR 35.0%
ATCTTCTTCTTCTTCTTCCT+CGG + chr1_4:72617472-72617491 None:intergenic 35.0%
! AAGCAAAACGTGCTGTTAAA+TGG - chr1_4:72617526-72617545 Msa0183650:intron 35.0%
! AGCAAAACGTGCTGTTAAAT+GGG - chr1_4:72617527-72617546 Msa0183650:intron 35.0%
!! TGTCTTTGAAGCTCTTATGT+TGG - chr1_4:72617707-72617726 Msa0183650:intron 35.0%
! TGAAGCTCTTATGTTGGTTA+AGG - chr1_4:72617713-72617732 Msa0183650:intron 35.0%
CATTTAAATCAGTAAAGCGG+AGG - chr1_4:72617972-72617991 Msa0183650:intron 35.0%
TAATGCAACATGCATACATG+AGG - chr1_4:72618011-72618030 Msa0183650:intron 35.0%
AAATCAGTGTTGTCAAACAG+CGG - chr1_4:72618060-72618079 Msa0183650:CDS 35.0%
TTGTCTCAGGAAAGTTGTTA+CGG - chr1_4:72618436-72618455 Msa0183650:intron 35.0%
AACAAAGGATTCTGACCATA+AGG - chr1_4:72618497-72618516 Msa0183650:intron 35.0%
AAAATAGGGACCAAAAGTGA+TGG - chr1_4:72618897-72618916 Msa0183650:intron 35.0%
TTATAGGGACTAAAAGTCGA+AGG - chr1_4:72618929-72618948 Msa0183650:intron 35.0%
! GGTTGTTGTTATGAGTTGTT+AGG - chr1_4:72619069-72619088 Msa0183650:intron 35.0%
! TTTGTAGTTTTTGCCTCCAA+AGG + chr1_4:72619471-72619490 None:intergenic 35.0%
!! GGAGATAAAGGTATTTATGC+GGG + chr1_4:72619650-72619669 None:intergenic 35.0%
CCTAATATGACAGGAGATAA+AGG + chr1_4:72619662-72619681 None:intergenic 35.0%
CCTTTATCTCCTGTCATATT+AGG - chr1_4:72619659-72619678 Msa0183650:intron 35.0%
TTATCTCCTGTCATATTAGG+GGG - chr1_4:72619662-72619681 Msa0183650:intron 35.0%
ATGATAGTCAAGTAACAAGG+TGG - chr1_4:72619796-72619815 Msa0183650:intron 35.0%
! GTTTGATGGTTTGATCAACA+AGG - chr1_4:72619818-72619837 Msa0183650:intron 35.0%
GCATAGTGCAAAATATTACC+TGG + chr1_4:72619896-72619915 None:intergenic 35.0%
GTGAAACTCACTAAAAACGT+AGG + chr1_4:72620064-72620083 None:intergenic 35.0%
AGGCTTATTCTCCATTTGAT+AGG + chr1_4:72620174-72620193 None:intergenic 35.0%
GTGAATCTCACTAAAAACGT+AGG + chr1_4:72620194-72620213 None:intergenic 35.0%
!! TATTACGGCCTCTAAGACAT+TGG - chr1_4:72617262-72617281 Msa0183650:three_prime_UTR 40.0%
! GATTGTTCTGGTGATGATGT+TGG + chr1_4:72617372-72617391 None:intergenic 40.0%
! CGTATCTTTGTGGATTGTTC+TGG + chr1_4:72617384-72617403 None:intergenic 40.0%
AGAGAAACGACGTATCTTTG+TGG + chr1_4:72617394-72617413 None:intergenic 40.0%
TTCTCTTTATCTGCATCTCG+CGG - chr1_4:72617408-72617427 Msa0183650:CDS 40.0%
TCTTCTTCTTCTTCTTCCTC+GGG + chr1_4:72617471-72617490 None:intergenic 40.0%
! CAATTGGTTGCGGCTTTTAA+TGG + chr1_4:72617499-72617518 None:intergenic 40.0%
! GTTTTGCTTCACGCTTCAAT+TGG + chr1_4:72617515-72617534 None:intergenic 40.0%
! GCAAAACGTGCTGTTAAATG+GGG - chr1_4:72617528-72617547 Msa0183650:intron 40.0%
!!! TGTTGTTTTGCCACAGAGAA+TGG - chr1_4:72617838-72617857 Msa0183650:intron 40.0%
!! GTTGTTTTGCCACAGAGAAT+GGG - chr1_4:72617839-72617858 Msa0183650:intron 40.0%
!! TTGTTTTGCCACAGAGAATG+GGG - chr1_4:72617840-72617859 Msa0183650:intron 40.0%
CGGCGTCAGTTCAATTATAT+AGG - chr1_4:72617884-72617903 Msa0183650:intron 40.0%
AGGAAAGTTGTTACGGAATG+TGG - chr1_4:72618443-72618462 Msa0183650:intron 40.0%
GAATGTGGAACCGGAATTAA+TGG - chr1_4:72618458-72618477 Msa0183650:intron 40.0%
TTAAAGCTTGCAGCTCCTTA+TGG + chr1_4:72618515-72618534 None:intergenic 40.0%
AAGTTCTCATCATCATCCTC+AGG + chr1_4:72618558-72618577 None:intergenic 40.0%
GATAGAAACTGAAGACGAGA+AGG - chr1_4:72618578-72618597 Msa0183650:intron 40.0%
GGATGATGAGGTATGATGTT+AGG - chr1_4:72618599-72618618 Msa0183650:intron 40.0%
TAGAGTACACTCTGTTGTGA+AGG - chr1_4:72619186-72619205 Msa0183650:intron 40.0%
AGAGTACACTCTGTTGTGAA+GGG - chr1_4:72619187-72619206 Msa0183650:intron 40.0%
GGGAAAGGATAAAAGAGAAC+AGG + chr1_4:72619237-72619256 None:intergenic 40.0%
ATTACACCCCCTAATATGAC+AGG + chr1_4:72619671-72619690 None:intergenic 40.0%
CAAGTAACAAGGTGGTTTGA+TGG - chr1_4:72619804-72619823 Msa0183650:intron 40.0%
AGGCTTACTCTCTACTTTGT+AGG + chr1_4:72620044-72620063 None:intergenic 40.0%
AAGTCGAGAAAGCAGAGATT+AGG - chr1_4:72620483-72620502 Msa0183650:CDS 40.0%
AGTCGAGAAAGCAGAGATTA+GGG - chr1_4:72620484-72620503 Msa0183650:CDS 40.0%
GAGGCCGTAATACTACTTGT+TGG + chr1_4:72617254-72617273 None:intergenic 45.0%
! TAGTAGTGGAAGAAGTAGGG+TGG + chr1_4:72617314-72617333 None:intergenic 45.0%
CTTCACGCTTCAATTGGTTG+CGG + chr1_4:72617509-72617528 None:intergenic 45.0%
! ACGTGCTGTTAAATGGGGAA+TGG - chr1_4:72617533-72617552 Msa0183650:intron 45.0%
!! TTTGATTTGGGGAGGAGAGA+AGG + chr1_4:72617568-72617587 None:intergenic 45.0%
!! AGTATGCGTTTGATTTGGGG+AGG + chr1_4:72617576-72617595 None:intergenic 45.0%
!!! TTTGTTTTTGGGTTGCAGGG+TGG - chr1_4:72617668-72617687 Msa0183650:intron 45.0%
GTTGTTACGGAATGTGGAAC+CGG - chr1_4:72618449-72618468 Msa0183650:intron 45.0%
GTGGAACCGGAATTAATGGA+CGG - chr1_4:72618462-72618481 Msa0183650:intron 45.0%
! AAGGAGCTGCAAGCTTTAAC+TGG - chr1_4:72618516-72618535 Msa0183650:intron 45.0%
! CTGCAAGCTTTAACTGGCTT+GGG - chr1_4:72618522-72618541 Msa0183650:intron 45.0%
!! TGCAAGCTTTAACTGGCTTG+GGG - chr1_4:72618523-72618542 Msa0183650:intron 45.0%
TCATCATCCTCAGGATCATC+AGG + chr1_4:72618549-72618568 None:intergenic 45.0%
TGAAGACGAGAAGGATGATG+AGG - chr1_4:72618587-72618606 Msa0183650:intron 45.0%
GAGTAGATCACTAGAGACAG+AGG + chr1_4:72618770-72618789 None:intergenic 45.0%
GAGTACACTCTGTTGTGAAG+GGG - chr1_4:72619188-72619207 Msa0183650:intron 45.0%
AGGAGAGAAACTCTCCTCAA+GGG + chr1_4:72619217-72619236 None:intergenic 45.0%
! CTTGTTCAGAAAGCACAAGC+AGG + chr1_4:72619944-72619963 None:intergenic 45.0%
TTTGCAGGAGTTGAGAAAGC+TGG - chr1_4:72620403-72620422 Msa0183650:CDS 45.0%
GCACTTTGCTCAAGAAACGA+AGG - chr1_4:72620436-72620455 Msa0183650:CDS 45.0%
TGCTCAAGAAACGAAGGCTA+CGG - chr1_4:72620442-72620461 Msa0183650:CDS 45.0%
AGCAGAGATTAGGGCTAAGA+AGG - chr1_4:72620493-72620512 Msa0183650:CDS 45.0%
ACTACGGAGAAAACGAGTGA+GGG + chr1_4:72620519-72620538 None:intergenic 45.0%
!!! TTTTATTATAAACTATATTT+TGG - chr1_4:72618695-72618714 Msa0183650:intron 5.0%
AGCCATGGCCAATGTCTTAG+AGG + chr1_4:72617273-72617292 None:intergenic 50.0%
TAGTGGAAGAAGTAGGGTGG+TGG + chr1_4:72617311-72617330 None:intergenic 50.0%
TTCTTCTTCTTCCTCGGGAG+CGG + chr1_4:72617466-72617485 None:intergenic 50.0%
! GCTGCAAGCTTTAACTGGCT+TGG - chr1_4:72618521-72618540 Msa0183650:intron 50.0%
CCACTTAGTGGGAAAAGGCT+TGG + chr1_4:72618640-72618659 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG - chr1_4:72618637-72618656 Msa0183650:intron 50.0%
GGACACCACTTAGTGGGAAA+AGG + chr1_4:72618645-72618664 None:intergenic 50.0%
!! TGTAGCGGACACCACTTAGT+GGG + chr1_4:72618651-72618670 None:intergenic 50.0%
!! ATGTAGCGGACACCACTTAG+TGG + chr1_4:72618652-72618671 None:intergenic 50.0%
ACTAAGTGGTGTCCGCTACA+TGG - chr1_4:72618651-72618670 Msa0183650:intron 50.0%
TTGTGAAGGGGAAACCCTTG+AGG - chr1_4:72619200-72619219 Msa0183650:intron 50.0%
CAGGAGAGAAACTCTCCTCA+AGG + chr1_4:72619218-72619237 None:intergenic 50.0%
CGGGCTCATGTCTAGTCAAT+AGG + chr1_4:72619631-72619650 None:intergenic 50.0%
! CTGAGCAGCGAACTTGTTTG+TGG + chr1_4:72620344-72620363 None:intergenic 50.0%
GAAGGCTACGGATGAAGAAG+AGG - chr1_4:72620454-72620473 Msa0183650:CDS 50.0%
GACTACGGAGAAAACGAGTG+AGG + chr1_4:72620520-72620539 None:intergenic 50.0%
!! GGCCTCTAAGACATTGGCCA+TGG - chr1_4:72617268-72617287 Msa0183650:three_prime_UTR 55.0%
! TGGTGAAAGCGCAACAGCCA+TGG + chr1_4:72617288-72617307 None:intergenic 55.0%
! TGGAAGAAGTAGGGTGGTGG+TGG + chr1_4:72617308-72617327 None:intergenic 55.0%
GGGTTGCAGGGTGGTTTCTT+TGG - chr1_4:72617677-72617696 Msa0183650:intron 55.0%
TTTGCCACAGAGAATGGGGC+CGG - chr1_4:72617844-72617863 Msa0183650:intron 55.0%
!! AGGTGTCGAGTATGATCGCC+AGG - chr1_4:72619875-72619894 Msa0183650:intron 55.0%
TTCATTACCCACCGCTCCCG+AGG - chr1_4:72617452-72617471 Msa0183650:CDS 60.0%
TCTTCTTCCTCGGGAGCGGT+GGG + chr1_4:72617462-72617481 None:intergenic 60.0%
TTCTTCTTCCTCGGGAGCGG+TGG + chr1_4:72617463-72617482 None:intergenic 60.0%
ACATCCGGCCCCATTCTCTG+TGG + chr1_4:72617851-72617870 None:intergenic 60.0%
ATGGGGCCGGATGTTCGTGA+AGG - chr1_4:72617857-72617876 Msa0183650:intron 60.0%
TGGGGCCGGATGTTCGTGAA+GGG - chr1_4:72617858-72617877 Msa0183650:intron 60.0%
CGCCTCCCTTCACGAACATC+CGG + chr1_4:72617866-72617885 None:intergenic 60.0%
CGGATGTTCGTGAAGGGAGG+CGG - chr1_4:72617864-72617883 Msa0183650:intron 60.0%
CTTGGGGCCTGATGATCCTG+AGG - chr1_4:72618539-72618558 Msa0183650:intron 60.0%
GGCCGGATGTTCGTGAAGGG+AGG - chr1_4:72617861-72617880 Msa0183650:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72617216 72620715 72617216 ID=Msa0183650;Name=Msa0183650
chr1_4 mRNA 72617216 72620715 72617216 ID=Msa0183650-mRNA-1;Parent=Msa0183650;Name=Msa0183650-mRNA-1;_AED=0.17;_eAED=0.17;_QI=30|0.33|0.75|1|0.66|0.75|4|147|226
chr1_4 exon 72617216 72617521 72617216 ID=Msa0183650-mRNA-1:exon:24622;Parent=Msa0183650-mRNA-1
chr1_4 exon 72618035 72618151 72618035 ID=Msa0183650-mRNA-1:exon:24621;Parent=Msa0183650-mRNA-1
chr1_4 exon 72620197 72620245 72620197 ID=Msa0183650-mRNA-1:exon:24620;Parent=Msa0183650-mRNA-1
chr1_4 exon 72620330 72620715 72620330 ID=Msa0183650-mRNA-1:exon:24619;Parent=Msa0183650-mRNA-1
chr1_4 five_prime_UTR 72620686 72620715 72620686 ID=Msa0183650-mRNA-1:five_prime_utr;Parent=Msa0183650-mRNA-1
chr1_4 CDS 72620330 72620685 72620330 ID=Msa0183650-mRNA-1:cds;Parent=Msa0183650-mRNA-1
chr1_4 CDS 72620197 72620245 72620197 ID=Msa0183650-mRNA-1:cds;Parent=Msa0183650-mRNA-1
chr1_4 CDS 72618035 72618151 72618035 ID=Msa0183650-mRNA-1:cds;Parent=Msa0183650-mRNA-1
chr1_4 CDS 72617363 72617521 72617363 ID=Msa0183650-mRNA-1:cds;Parent=Msa0183650-mRNA-1
chr1_4 three_prime_UTR 72617216 72617362 72617216 ID=Msa0183650-mRNA-1:three_prime_utr;Parent=Msa0183650-mRNA-1
Gene Sequence

>Msa0183650

ATGAGCCAACAAGTAGTATTACGGCCTCTAAGACATTGGCCATGGCTGTTGCGCTTTCACCACCACCACCCTACTTCTTCCACTACTAAATTTTCTGCACTATATCATCATCTTCTTCTTCTTCCAACATCATCACCAGAACAATCCACAAAGATACGTCGTTTCTCTTTATCTGCATCTCGCGGAAAACTTCGAAGAGCTGATTCTTCATTACCCACCGCTCCCGAGGAAGAAGAAGAAGAAGATGCTGCCATTAAAAGCCGCAACCAATTGAAGCGTGAAGCAAAACGTGCTGTTAAATGGGGAATGGATTTGTCTTCCTTCTCTCCTCCCCAAATCAAACGCATACTTAAGTTGGTGGTTTCTTTGGACCAAATTGTCTTTGAAGCTCTTATGTTGGTTAAGGAATCTAAGCCTTATGATGATAGTCAAGTAACAAGGTGGTTTGATGGTTTGATCAACAAGGACATTCAAATCACCAATGAAGTTTATTCAGTTCAAGGTGTCGAGTATGATCGCCAGGAGTTGAGAAAGCTGGTACGTAAAGTGCACTTTGCTCAAGAAACGAAGGCTACGGATGAAGAAGAGGAGAAAAAAGTCGAGAAAGCAGAGATTAGGGCTAAGAAGGCCCTCACTCGTTTTCTCCGTAGTCTTTCAGAGAATATTGTCAATGAACATTAG

Protein sequence

>Msa0183650

MSQQVVLRPLRHWPWLLRFHHHHPTSSTTKFSALYHHLLLLPTSSPEQSTKIRRFSLSASRGKLRRADSSLPTAPEEEEEEDAAIKSRNQLKREAKRAVKWGMDLSSFSPPQIKRILKLVVSLDQIVFEALMLVKESKPYDDSQVTRWFDGLINKDIQITNEVYSVQGVEYDRQELRKLVRKVHFAQETKATDEEEEKKVEKAEIRAKKALTRFLRSLSENIVNEH*