AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074910 MtrunA17_Chr1g0183021 92.421 409 21 3 1 405 64 466 0.0 741
Msa0074910 MtrunA17_Chr7g0262551 73.889 360 94 0 46 405 5 364 0.0 565
Msa0074910 MtrunA17_Chr7g0262571 62.532 395 148 0 10 404 24 418 0.0 517
Msa0074910 MtrunA17_Chr1g0183031 65.833 360 123 0 46 405 9 368 1.80e-176 496
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074910 AT4G28706.3 67.042 355 117 0 50 404 48 402 0.0 512
Msa0074910 AT4G28706.1 67.042 355 117 0 50 404 46 400 0.0 512
Msa0074910 AT4G28706.4 67.135 356 116 1 50 404 48 403 0.0 511
Msa0074910 AT4G28706.2 67.135 356 116 1 50 404 48 403 0.0 511
Msa0074910 AT5G43910.2 54.722 360 158 2 46 404 8 363 5.99e-140 404
Msa0074910 AT5G43910.4 55.031 318 138 2 46 362 8 321 1.12e-121 356
Msa0074910 AT5G43910.1 54.015 274 125 1 46 318 8 281 5.61e-104 309
Msa0074910 AT5G43910.5 54.815 270 121 1 46 314 8 277 6.30e-104 310
Msa0074910 AT5G43910.3 54.815 270 121 1 46 314 8 277 1.15e-103 308

Find 123 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCACTTCACTCACTTTA+TGG 0.132342 1_2:-49965327 Msa0074910:five_prime_UTR
TTACGTTGGGTAACCTTAAA+AGG 0.186047 1_2:+49961158 None:intergenic
ATTTACCCTCTTAGATGTTT+TGG 0.230744 1_2:-49959706 Msa0074910:three_prime_UTR
AAAATTTGTGGCTGTAACTT+TGG 0.249227 1_2:-49961137 Msa0074910:CDS
GGTGCCGGGGATGCATTTAT+TGG 0.310291 1_2:-49960348 Msa0074910:CDS
TTGACTGAATTGTTTATTGA+TGG 0.320549 1_2:-49959746 Msa0074910:three_prime_UTR
CCAGTCAGTGGCAAAATTAA+AGG 0.324818 1_2:-49960454 Msa0074910:intron
GGTGGATGTAGACAACTTAT+TGG 0.326212 1_2:-49960965 Msa0074910:CDS
CAACATAATCAGCTAATTTC+AGG 0.326463 1_2:+49961736 None:intergenic
TTAACCTGCCTTGCTCGTTT+AGG 0.328379 1_2:-49964447 Msa0074910:CDS
AAACACAAGGCTCGTTTCTA+AGG 0.332845 1_2:-49964421 Msa0074910:intron
ATCAGTCACCGTCGATTTCT+TGG 0.344948 1_2:-49964865 Msa0074910:CDS
AACTCGATTCTGAAAGATCT+TGG 0.350613 1_2:+49962598 None:intergenic
AAATTTGTGGCTGTAACTTT+GGG 0.365260 1_2:-49961136 Msa0074910:CDS
TTTATTGGATCTGTGATCTA+TGG 0.367712 1_2:-49960333 Msa0074910:intron
TCATCTAATATGCCCCTGCC+TGG 0.371108 1_2:+49963975 None:intergenic
GAAGGAATAGGAACGGTTAT+CGG 0.380834 1_2:-49960429 Msa0074910:CDS
ACTCGATTCTGAAAGATCTT+GGG 0.390681 1_2:+49962599 None:intergenic
GAAAGATCTTGGGGTATCAT+TGG 0.390891 1_2:+49962609 None:intergenic
ATCGAGTTTGTTATCTGCAT+TGG 0.395357 1_2:-49962583 Msa0074910:CDS
CCTTTCTGCATCAATTAAGA+TGG 0.396655 1_2:+49961782 None:intergenic
TTTCAATGAAGTTTCAATCA+TGG 0.397353 1_2:-49959611 Msa0074910:three_prime_UTR
AAGAAACCAAAACATCTAAG+AGG 0.398040 1_2:+49959700 None:intergenic
GGTGCCAAGTGCAGAGATCT+AGG 0.414691 1_2:-49959873 Msa0074910:CDS
AAGGCAGGTTAAAGCATTGC+CGG 0.419139 1_2:+49964458 None:intergenic
AATCAGAACAACCACTTTGA+AGG 0.420228 1_2:-49964808 Msa0074910:intron
GTGCTTATGCAGGTCGGTTG+TGG 0.429048 1_2:-49964888 Msa0074910:intron
CGCACAACGGTGGCGCTTTG+AGG 0.441473 1_2:+49964988 None:intergenic
AGCTGAGAGCATTCCGCCCT+CGG 0.443652 1_2:-49960388 Msa0074910:CDS
GGTATCATTGGAGGATATCC+AGG 0.445056 1_2:+49962621 None:intergenic
CCCTTGTATTGGCTCAATGC+TGG 0.457091 1_2:+49959787 None:intergenic
AAATTAAAGGCAGAAGGAAT+AGG 0.458558 1_2:-49960441 Msa0074910:CDS
GTTACCCAACGTAAAATTTG+TGG 0.460980 1_2:-49961149 Msa0074910:CDS
GCAGAGATTCGACATGGTTA+CGG 0.461264 1_2:+49965227 None:intergenic
AGGCGTGGGTCTGCGCGGTA+TGG 0.464792 1_2:+49959834 None:intergenic
CTTGTTGATACCACTGGTGC+CGG 0.467767 1_2:-49960363 Msa0074910:CDS
TCCACAATAATGTACGTAAA+CGG 0.467777 1_2:+49963439 None:intergenic
AAGGAATAGGAACGGTTATC+GGG 0.482979 1_2:-49960428 Msa0074910:CDS
TTGCATTACCGATGATATGC+AGG 0.482989 1_2:+49960900 None:intergenic
ACTGAAGCCATCCCTTGTAT+TGG 0.483875 1_2:+49959776 None:intergenic
TCCAGCATTGAGCCAATACA+AGG 0.484239 1_2:-49959788 Msa0074910:three_prime_UTR
TTGCGGATGACAGCCCAGGC+AGG 0.492500 1_2:-49963989 Msa0074910:CDS
TTGTTGATACCACTGGTGCC+GGG 0.498753 1_2:-49960362 Msa0074910:CDS
TGCGGATGACAGCCCAGGCA+GGG 0.505235 1_2:-49963988 Msa0074910:CDS
TAGACCTAAACGAGCAAGGC+AGG 0.509005 1_2:+49964443 None:intergenic
GTTCAAGGTGGTGGTAATGC+CGG 0.514740 1_2:-49964477 Msa0074910:CDS
AGACAACTTATTGGAATCGC+TGG 0.516469 1_2:-49960956 Msa0074910:CDS
TCGGAGCTTGTTGATACCAC+TGG 0.518281 1_2:-49960369 Msa0074910:CDS
GCGGATGACAGCCCAGGCAG+GGG 0.519058 1_2:-49963987 Msa0074910:CDS
CATCTAATATGCCCCTGCCT+GGG 0.522457 1_2:+49963976 None:intergenic
TAGATTGCGGATGACAGCCC+AGG 0.525196 1_2:-49963993 Msa0074910:CDS
GCAAAGGGTAGCATTGTCTC+TGG 0.526457 1_2:+49960155 None:intergenic
CATTTATGTAAGAGAGAGGA+TGG 0.529081 1_2:-49959658 Msa0074910:three_prime_UTR
CTTTCTGCATCAATTAAGAT+GGG 0.529991 1_2:+49961783 None:intergenic
TCATCGCAGTAGAAATTTGA+AGG 0.531166 1_2:-49965031 Msa0074910:CDS
CTCGTTTAGGTCTAAACACA+AGG 0.531596 1_2:-49964434 Msa0074910:CDS
TAATTGATGCAGAAAGGCCA+AGG 0.534906 1_2:-49961776 Msa0074910:CDS
AGATCATCTAACCCTTCCCT+TGG 0.542681 1_2:+49961759 None:intergenic
TGCTCCTAGATCTCTGCACT+TGG 0.543238 1_2:+49959869 None:intergenic
AACGGTGGCGCTTTGAGGAA+CGG 0.543705 1_2:+49964993 None:intergenic
CGAACTTGTATACATACCCC+TGG 0.546807 1_2:-49962639 Msa0074910:CDS
ACATACCACATTAGCAGCAA+AGG 0.549212 1_2:+49960139 None:intergenic
AGTTTGTTATCTGCATTGGA+TGG 0.549990 1_2:-49962579 Msa0074910:CDS
CTCGATTCTGAAAGATCTTG+GGG 0.550007 1_2:+49962600 None:intergenic
GCTGTAACTTTGGGAAAAGA+TGG 0.551573 1_2:-49961127 Msa0074910:CDS
GGAATCGCTGGAGTTAAGAA+AGG 0.553449 1_2:-49960944 Msa0074910:CDS
TTCACATTTATGTAAGAGAG+AGG 0.555722 1_2:-49959662 Msa0074910:three_prime_UTR
ACCGTTTACGTACATTATTG+TGG 0.557011 1_2:-49963440 Msa0074910:CDS
ATGAATGAATGAGTGGTCAT+TGG 0.558606 1_2:+49965304 None:intergenic
CCATCTTAATTGATGCAGAA+AGG 0.560154 1_2:-49961782 Msa0074910:CDS
AGGATAGAAACAAGCGCTCG+CGG 0.560505 1_2:+49961178 None:intergenic
CATACCACATTAGCAGCAAA+GGG 0.560550 1_2:+49960140 None:intergenic
AATACAAGGGATGGCTTCAG+TGG 0.561337 1_2:-49959774 Msa0074910:three_prime_UTR
GCTACCCTTTGCTGCTAATG+TGG 0.565502 1_2:-49960144 Msa0074910:intron
ACATCCACCTCTTCTGTGGT+AGG 0.565690 1_2:+49960979 None:intergenic
AGATCCAATAAATGCATCCC+CGG 0.570608 1_2:+49960344 None:intergenic
GTCTACATCCACCTCTTCTG+TGG 0.570769 1_2:+49960975 None:intergenic
AGAAACCAAAACATCTAAGA+GGG 0.573537 1_2:+49959701 None:intergenic
TGAATAAAGGACGCTAGGCG+TGG 0.574504 1_2:+49959819 None:intergenic
GTGGCAAAATTAAAGGCAGA+AGG 0.575500 1_2:-49960447 Msa0074910:CDS
TTGTTTAATTTCAGTTAACA+AGG 0.576890 1_2:-49965056 Msa0074910:intron
AGATCTTGGGGTATCATTGG+AGG 0.580008 1_2:+49962612 None:intergenic
ACTACTGAATAAAGGACGCT+AGG 0.582762 1_2:+49959814 None:intergenic
CATTGAGCCAATACAAGGGA+TGG 0.584831 1_2:-49959783 Msa0074910:three_prime_UTR
ATGCAGAAAGGCCAAGGGAA+GGG 0.586552 1_2:-49961770 Msa0074910:CDS
ATACAAGGGATGGCTTCAGT+GGG 0.591668 1_2:-49959773 Msa0074910:three_prime_UTR
AAATGCATCCCCGGCACCAG+TGG 0.595424 1_2:+49960353 None:intergenic
TTAGATGAGCTACGGACTGA+TGG 0.596315 1_2:-49963960 Msa0074910:CDS
AATTCCAACCTGCATATCAT+CGG 0.597038 1_2:-49960908 Msa0074910:intron
TGCTCTAGTTGTTGCCCACG+AGG 0.599306 1_2:-49962517 Msa0074910:intron
TTTATAGGTGATAACCTCGT+GGG 0.604370 1_2:+49962503 None:intergenic
GTGGTATCAACAAGCTCCGA+GGG 0.610523 1_2:+49960372 None:intergenic
TGTTTAGACCTAAACGAGCA+AGG 0.611501 1_2:+49964439 None:intergenic
GGGGCATATTAGATGAGCTA+CGG 0.611687 1_2:-49963968 Msa0074910:CDS
GAATAAAGGACGCTAGGCGT+GGG 0.613508 1_2:+49959820 None:intergenic
ATTACCGATGATATGCAGGT+TGG 0.615097 1_2:+49960904 None:intergenic
GATGCAGAAAGGCCAAGGGA+AGG 0.616991 1_2:-49961771 Msa0074910:CDS
AGCAAGTCCTACCACAGAAG+AGG 0.623266 1_2:-49960986 Msa0074910:CDS
TTGCTGACAGGCATGGACAG+AGG 0.624956 1_2:-49961212 Msa0074910:intron
AAGTCCTACCACAGAAGAGG+TGG 0.625523 1_2:-49960983 Msa0074910:CDS
ATGCTCAGCTAAGTTTCCAA+AGG 0.628024 1_2:-49961712 Msa0074910:intron
GGTTGAAATGAATGAATGAG+TGG 0.629730 1_2:+49965297 None:intergenic
TGGCCATAAAGTGAGTGAAG+TGG 0.629809 1_2:+49965324 None:intergenic
GAGAGGGAAACGCACAACGG+TGG 0.647307 1_2:+49964978 None:intergenic
AAAGGAAGCAACCTTCAAAG+TGG 0.648978 1_2:+49964797 None:intergenic
TGAGCTACGGACTGATGGCG+TGG 0.655517 1_2:-49963955 Msa0074910:CDS
GTATCATTGGAGGATATCCA+GGG 0.655895 1_2:+49962622 None:intergenic
TGTTGATACCACTGGTGCCG+GGG 0.657221 1_2:-49960361 Msa0074910:CDS
TGGCTTAGGATAAGCAGCAA+CGG 0.657813 1_2:+49964839 None:intergenic
AAAGGCAGAAGGAATAGGAA+CGG 0.658683 1_2:-49960436 Msa0074910:CDS
ACGCTAGGCGTGGGTCTGCG+CGG 0.665905 1_2:+49959829 None:intergenic
AATTGATGCAGAAAGGCCAA+GGG 0.667892 1_2:-49961775 Msa0074910:CDS
CTGCTCGAGAGAAGTGTCAG+TGG 0.668499 1_2:-49961097 Msa0074910:intron
CCAGCATTGAGCCAATACAA+GGG 0.669727 1_2:-49959787 Msa0074910:three_prime_UTR
AACGGTAGCCAAGAAATCGA+CGG 0.675256 1_2:+49964857 None:intergenic
AAAAGTGCAGAGATTCGACA+TGG 0.688208 1_2:+49965221 None:intergenic
GTATCAACAAGCTCCGAGGG+CGG 0.694955 1_2:+49960375 None:intergenic
AGTGGTATCAACAAGCTCCG+AGG 0.709683 1_2:+49960371 None:intergenic
GGTGGCGCTTTGAGGAACGG+AGG 0.717893 1_2:+49964996 None:intergenic
TACAAGGGATGGCTTCAGTG+GGG 0.728644 1_2:-49959772 Msa0074910:three_prime_UTR
GTTATCGGGAAACTATACAT+CGG 0.739368 1_2:-49960414 Msa0074910:CDS
TATCATTGGAGGATATCCAG+GGG 0.762329 1_2:+49962623 None:intergenic
AGAGATCTAGGAGCACGAAG+CGG 0.771967 1_2:-49959861 Msa0074910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTAAAATGTTTATATT+TGG - chr1_2:49960152-49960171 Msa0074910:CDS 10.0%
!!! AATTATTTAGTTTTAATTTC+TGG - chr1_2:49960490-49960509 Msa0074910:intron 10.0%
!! TTATTAGTATTAATAAAAGT+TGG + chr1_2:49962483-49962502 None:intergenic 10.0%
!!! ATCTAAAATTCAAAAAATTA+GGG + chr1_2:49963514-49963533 None:intergenic 10.0%
!!! TATCTAAAATTCAAAAAATT+AGG + chr1_2:49963515-49963534 None:intergenic 10.0%
!!! ATTTTTTTCAGTAAAAAAAA+TGG + chr1_2:49963547-49963566 None:intergenic 10.0%
!!! AAATTTGATTTTTGTGTTTT+GGG + chr1_2:49959576-49959595 None:intergenic 15.0%
!!! TAATTAATTTTAATTCTCGA+TGG + chr1_2:49961287-49961306 None:intergenic 15.0%
!! GAGAATTAAAATTAATTAGT+GGG - chr1_2:49961289-49961308 Msa0074910:intron 15.0%
!! AGAATTAAAATTAATTAGTG+GGG - chr1_2:49961290-49961309 Msa0074910:intron 15.0%
!!! TTAATGCTTTTTTTTTTTTG+TGG - chr1_2:49961344-49961363 Msa0074910:intron 15.0%
!! AATTCTGATGTTAATTATAA+GGG - chr1_2:49962379-49962398 Msa0074910:intron 15.0%
!! GTAAGAAATATATAATACTA+TGG - chr1_2:49963190-49963209 Msa0074910:intron 15.0%
!!! ATCTTACATAATTGATATTT+TGG + chr1_2:49964202-49964221 None:intergenic 15.0%
!!! TTTGTTATATTTTTCTCTTA+TGG - chr1_2:49964551-49964570 Msa0074910:intron 15.0%
!!! GAAATTTGATTTTTGTGTTT+TGG + chr1_2:49959577-49959596 None:intergenic 20.0%
!!! TTGTTTAATTTCAGTTAACA+AGG - chr1_2:49959793-49959812 Msa0074910:three_prime_UTR 20.0%
!! CATAAAAAAACCTCAAAATT+TGG + chr1_2:49959920-49959939 None:intergenic 20.0%
!!! TATTATGCATTGTAATTTTC+AGG - chr1_2:49960350-49960369 Msa0074910:CDS 20.0%
!! TTTATAAACACTTAAACAAG+TGG + chr1_2:49960554-49960573 None:intergenic 20.0%
!!! AAATTTGGTTTATTGCATTT+TGG - chr1_2:49960992-49961011 Msa0074910:intron 20.0%
!!! ATATTTAATTGATAACCCTT+GGG + chr1_2:49961209-49961228 None:intergenic 20.0%
!! AATCGAAATGTAGTTAATTA+AGG - chr1_2:49961238-49961257 Msa0074910:intron 20.0%
!! CGAGAATTAAAATTAATTAG+TGG - chr1_2:49961288-49961307 Msa0074910:intron 20.0%
!! AAGCATTAATAAAATAGTAG+AGG + chr1_2:49961333-49961352 None:intergenic 20.0%
!! GAATTGCAAGTAAAATTTAT+AGG + chr1_2:49962364-49962383 None:intergenic 20.0%
!! CAATTCTGATGTTAATTATA+AGG - chr1_2:49962378-49962397 Msa0074910:intron 20.0%
!!! TTTGATTTCTAAATATGACT+GGG + chr1_2:49962405-49962424 None:intergenic 20.0%
!! ATGTTTATTTGATAAAATCC+TGG + chr1_2:49962432-49962451 None:intergenic 20.0%
!! ATCATGTAACAATTTCTTAT+AGG + chr1_2:49962763-49962782 None:intergenic 20.0%
!!! TTTTTGCATAATAAACTCAA+GGG + chr1_2:49962903-49962922 None:intergenic 20.0%
!!! TTATTTTCTTTTGCTTGTAA+AGG - chr1_2:49962952-49962971 Msa0074910:intron 20.0%
!! GTATATTAAAACATAGAGAA+TGG + chr1_2:49964081-49964100 None:intergenic 20.0%
!!! AAAAAGCTTATGCATTTTAA+TGG - chr1_2:49964941-49964960 Msa0074910:intron 20.0%
!!! AAAAGCTTATGCATTTTAAT+GGG - chr1_2:49964942-49964961 Msa0074910:intron 20.0%
!! GAAAGTAAAAATTATAAGCA+GGG + chr1_2:49965222-49965241 None:intergenic 20.0%
!! TGAAAGTAAAAATTATAAGC+AGG + chr1_2:49965223-49965242 None:intergenic 20.0%
!! AGAGAACAAAAAAATTGAAT+AGG - chr1_2:49965310-49965329 Msa0074910:five_prime_UTR 20.0%
! AAAAAAACCTCAAAATTTGG+CGG + chr1_2:49959917-49959936 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG - chr1_2:49960677-49960696 Msa0074910:intron 25.0%
!! TACATCTTTTATTGTGGTAA+TGG - chr1_2:49960918-49960937 Msa0074910:CDS 25.0%
! AAATTATACTTCGAATCAGT+TGG + chr1_2:49961186-49961205 None:intergenic 25.0%
!! CATATTTAATTGATAACCCT+TGG + chr1_2:49961210-49961229 None:intergenic 25.0%
!!! AATGGTCATTTTCTTACATA+TGG - chr1_2:49961444-49961463 Msa0074910:intron 25.0%
! TGATCTAAATTTCAAAAGAG+AGG - chr1_2:49961502-49961521 Msa0074910:intron 25.0%
! GATCTAAATTTCAAAAGAGA+GGG - chr1_2:49961503-49961522 Msa0074910:intron 25.0%
! ATCTAAATTTCAAAAGAGAG+GGG - chr1_2:49961504-49961523 Msa0074910:intron 25.0%
! ACTTGAATCATTCTAAGTTA+AGG - chr1_2:49961779-49961798 Msa0074910:CDS 25.0%
! CTTGAATCATTCTAAGTTAA+GGG - chr1_2:49961780-49961799 Msa0074910:CDS 25.0%
! TTGAATCATTCTAAGTTAAG+GGG - chr1_2:49961781-49961800 Msa0074910:CDS 25.0%
!!! TATAAAGTGTTGTCAAACAA+AGG + chr1_2:49961929-49961948 None:intergenic 25.0%
! TTATACTAAATCGCATATCA+CGG - chr1_2:49961944-49961963 Msa0074910:intron 25.0%
! ACTCATATAGGATATATTGT+AGG + chr1_2:49962095-49962114 None:intergenic 25.0%
!! CTTTGATTTCTAAATATGAC+TGG + chr1_2:49962406-49962425 None:intergenic 25.0%
!! ATGTAATCTAAAATCCATAG+TGG - chr1_2:49962616-49962635 Msa0074910:CDS 25.0%
! AAGAAAAAGAACGAATGTTA+GGG + chr1_2:49962694-49962713 None:intergenic 25.0%
! AAAGAAAAAGAACGAATGTT+AGG + chr1_2:49962695-49962714 None:intergenic 25.0%
! AATTCTTCACCAAAAACATA+AGG + chr1_2:49962794-49962813 None:intergenic 25.0%
! GTGAAGAATTTCAAAATTCT+AGG - chr1_2:49962804-49962823 Msa0074910:intron 25.0%
!! TTCTAGGAAATTGAAATTAC+AGG - chr1_2:49962820-49962839 Msa0074910:intron 25.0%
! TCTAGGAAATTGAAATTACA+GGG - chr1_2:49962821-49962840 Msa0074910:intron 25.0%
!!! AAGGGAATGTAATTTTTTTG+AGG + chr1_2:49962885-49962904 None:intergenic 25.0%
!! GTTTTTGCATAATAAACTCA+AGG + chr1_2:49962904-49962923 None:intergenic 25.0%
! ATATGATGTCTTAAATGACT+TGG - chr1_2:49963319-49963338 Msa0074910:intron 25.0%
!!! AAGAAAAGACTAGTTTTTTG+TGG - chr1_2:49963347-49963366 Msa0074910:intron 25.0%
!! ACAACTTAACATGTATTTTG+GGG + chr1_2:49963379-49963398 None:intergenic 25.0%
!! CACAACTTAACATGTATTTT+GGG + chr1_2:49963380-49963399 None:intergenic 25.0%
!! TCACAACTTAACATGTATTT+TGG + chr1_2:49963381-49963400 None:intergenic 25.0%
!! TACATGTTAAGTTGTGAATA+TGG - chr1_2:49963384-49963403 Msa0074910:intron 25.0%
!! AAGCTATATTCTTTTTGTTG+TGG - chr1_2:49963423-49963442 Msa0074910:intron 25.0%
!!! AGCTATATTCTTTTTGTTGT+GGG - chr1_2:49963424-49963443 Msa0074910:intron 25.0%
!! ACATATCATTTTACCTTTTC+TGG - chr1_2:49963485-49963504 Msa0074910:intron 25.0%
!!! ATTATTTTTACTCTTCTCTG+TGG - chr1_2:49963565-49963584 Msa0074910:intron 25.0%
!!! TTATTTTTACTCTTCTCTGT+GGG - chr1_2:49963566-49963585 Msa0074910:intron 25.0%
!! TTTAATCATTTGACCTTTTC+TGG - chr1_2:49963839-49963858 Msa0074910:intron 25.0%
! CATCATTATACACTAACATA+TGG + chr1_2:49964781-49964800 None:intergenic 25.0%
! AATTTATGTATTGAACCTGT+TGG - chr1_2:49964898-49964917 Msa0074910:intron 25.0%
!!! AAAGCTTATGCATTTTAATG+GGG - chr1_2:49964943-49964962 Msa0074910:intron 25.0%
! TTGACTGAATTGTTTATTGA+TGG - chr1_2:49965103-49965122 Msa0074910:intron 25.0%
! TTTCAATGAAGTTTCAATCA+TGG - chr1_2:49965238-49965257 Msa0074910:exon 25.0%
AAAAAACCTCAAAATTTGGC+GGG + chr1_2:49959916-49959935 None:intergenic 30.0%
! GTTGTTCTGATTTTATCATC+TGG + chr1_2:49960033-49960052 None:intergenic 30.0%
AAGCTAGTATAGTGCATATT+TGG - chr1_2:49960093-49960112 Msa0074910:intron 30.0%
!!! CATTGTAATTTTCAGGTTCA+AGG - chr1_2:49960357-49960376 Msa0074910:CDS 30.0%
TTAAATAAGCAATGTCGAGA+GGG + chr1_2:49960472-49960491 None:intergenic 30.0%
ATTAAATAAGCAATGTCGAG+AGG + chr1_2:49960473-49960492 None:intergenic 30.0%
!! CTGGAAGTATTTAACAGTTT+AGG - chr1_2:49960509-49960528 Msa0074910:intron 30.0%
CACTTAAACAAGTGGTTTAT+CGG + chr1_2:49960546-49960565 None:intergenic 30.0%
! ACTCTTTTCATAGACTATTG+TGG - chr1_2:49960641-49960660 Msa0074910:intron 30.0%
!!! CTGAGTTTTTTGAAACCATT+GGG - chr1_2:49960798-49960817 Msa0074910:intron 30.0%
! GTGCATTTTACTAATGTGTT+TGG - chr1_2:49960826-49960845 Msa0074910:intron 30.0%
CTTCATGAAAGCTTGAAATT+TGG - chr1_2:49960977-49960996 Msa0074910:CDS 30.0%
TATTGTTGCCCATAACTAAA+AGG + chr1_2:49961051-49961070 None:intergenic 30.0%
AAAATACTGAGATTTGAGAG+TGG + chr1_2:49961149-49961168 None:intergenic 30.0%
ATTCGAAGTATAATTTCCCA+AGG - chr1_2:49961190-49961209 Msa0074910:CDS 30.0%
TTCGAAGTATAATTTCCCAA+GGG - chr1_2:49961191-49961210 Msa0074910:CDS 30.0%
! TAACTACATTTCGATTTGTC+TGG + chr1_2:49961234-49961253 None:intergenic 30.0%
AAAATTAATTAGTGGGGTTC+TGG - chr1_2:49961296-49961315 Msa0074910:intron 30.0%
AATAAAATAGTAGAGGCCAT+TGG + chr1_2:49961326-49961345 None:intergenic 30.0%
TCCACAATAATGTACGTAAA+CGG + chr1_2:49961413-49961432 None:intergenic 30.0%
TCTAAATTTCAAAAGAGAGG+GGG - chr1_2:49961505-49961524 Msa0074910:intron 30.0%
TAATTCAGTGTTGTCAATTG+TGG - chr1_2:49961841-49961860 Msa0074910:intron 30.0%
AGTAGTTAGAATGAGTCAAA+GGG + chr1_2:49962176-49962195 None:intergenic 30.0%
AAGTAGTTAGAATGAGTCAA+AGG + chr1_2:49962177-49962196 None:intergenic 30.0%
!!! CTCATTCTAACTACTTTTTC+AGG - chr1_2:49962181-49962200 Msa0074910:intron 30.0%
!! GCAAGCATTGTATATTTTGA+CGG - chr1_2:49962294-49962313 Msa0074910:intron 30.0%
!!! CAAGCATTGTATATTTTGAC+GGG - chr1_2:49962295-49962314 Msa0074910:intron 30.0%
! ATTTAGAAATCAAAGCATCC+AGG - chr1_2:49962411-49962430 Msa0074910:intron 30.0%
AATGCACTTAGCATACATAA+TGG + chr1_2:49962720-49962739 None:intergenic 30.0%
AAATGATTCATAAAACACCC+TGG + chr1_2:49962854-49962873 None:intergenic 30.0%
! TTTTCTTTTGCTTGTAAAGG+AGG - chr1_2:49962955-49962974 Msa0074910:intron 30.0%
AAAATAAAAGAGCTTCACAG+AGG - chr1_2:49962991-49963010 Msa0074910:intron 30.0%
AAATAAAAGAGCTTCACAGA+GGG - chr1_2:49962992-49963011 Msa0074910:intron 30.0%
CTTTCTGCATCAATTAAGAT+GGG + chr1_2:49963069-49963088 None:intergenic 30.0%
CAACATAATCAGCTAATTTC+AGG + chr1_2:49963116-49963135 None:intergenic 30.0%
AAAAACAATGCATTCACCTT+TGG + chr1_2:49963156-49963175 None:intergenic 30.0%
CATTTATGCACATGTAAACA+AGG + chr1_2:49963226-49963245 None:intergenic 30.0%
TAAATAGTACATTTACTGCC+TGG + chr1_2:49963288-49963307 None:intergenic 30.0%
GGTAAAATGATATGTACCAT+TGG + chr1_2:49963480-49963499 None:intergenic 30.0%
!! TATTTTTACTCTTCTCTGTG+GGG - chr1_2:49963567-49963586 Msa0074910:intron 30.0%
!! TGCATTTGATGATGCTTAAA+AGG + chr1_2:49963600-49963619 None:intergenic 30.0%
AAAATTTGTGGCTGTAACTT+TGG - chr1_2:49963712-49963731 Msa0074910:intron 30.0%
AAATTTGTGGCTGTAACTTT+GGG - chr1_2:49963713-49963732 Msa0074910:intron 30.0%
GTATGTGTAGATATGATTGT+GGG - chr1_2:49963774-49963793 Msa0074910:intron 30.0%
!! CATCTGCTTTTAATGTAAAC+AGG - chr1_2:49963815-49963834 Msa0074910:intron 30.0%
TTAAAACATAGAGAATGGCA+GGG + chr1_2:49964076-49964095 None:intergenic 30.0%
ATTAAAACATAGAGAATGGC+AGG + chr1_2:49964077-49964096 None:intergenic 30.0%
!!! CTACAATGTTTGACCTTTTT+TGG - chr1_2:49964118-49964137 Msa0074910:intron 30.0%
ACACTGTATTTGTCCAAAAA+AGG + chr1_2:49964134-49964153 None:intergenic 30.0%
ATTAACGTCTTGTAGAGATT+AGG + chr1_2:49964161-49964180 None:intergenic 30.0%
!!! CATAATTGATATTTTGGCTC+AGG + chr1_2:49964196-49964215 None:intergenic 30.0%
AAATTAAAGGCAGAAGGAAT+AGG - chr1_2:49964408-49964427 Msa0074910:intron 30.0%
TTTATTGGATCTGTGATCTA+TGG - chr1_2:49964516-49964535 Msa0074910:intron 30.0%
TTTCTCTTATGGTCTTCAAT+AGG - chr1_2:49964562-49964581 Msa0074910:intron 30.0%
! ATAAGTTTGTTTGAGGTTAG+AGG + chr1_2:49964826-49964845 None:intergenic 30.0%
CTATACACACGATACAAATT+AGG + chr1_2:49964868-49964887 None:intergenic 30.0%
CTGGAAAAACTACTGAATAA+AGG + chr1_2:49965046-49965065 None:intergenic 30.0%
! ATTTACCCTCTTAGATGTTT+TGG - chr1_2:49965143-49965162 Msa0074910:intron 30.0%
AGAAACCAAAACATCTAAGA+GGG + chr1_2:49965151-49965170 None:intergenic 30.0%
AAGAAACCAAAACATCTAAG+AGG + chr1_2:49965152-49965171 None:intergenic 30.0%
TTCACATTTATGTAAGAGAG+AGG - chr1_2:49965187-49965206 Msa0074910:CDS 30.0%
ATGAATGAATGAGTGGTCAT+TGG + chr1_2:49959548-49959567 None:intergenic 35.0%
GGTTGAAATGAATGAATGAG+TGG + chr1_2:49959555-49959574 None:intergenic 35.0%
TCATCGCAGTAGAAATTTGA+AGG - chr1_2:49959818-49959837 Msa0074910:CDS 35.0%
GAAAGAAAGAGAGAAAGAGA+GGG + chr1_2:49959890-49959909 None:intergenic 35.0%
TGAAAGAAAGAGAGAAAGAG+AGG + chr1_2:49959891-49959910 None:intergenic 35.0%
!! CTGATTTTATCATCTGGCTT+AGG + chr1_2:49960027-49960046 None:intergenic 35.0%
AATCAGAACAACCACTTTGA+AGG - chr1_2:49960041-49960060 Msa0074910:intron 35.0%
!! AAGCCACTCTTTAAAGCATT+TGG + chr1_2:49960329-49960348 None:intergenic 35.0%
!!! TGTAATTTTCAGGTTCAAGG+TGG - chr1_2:49960360-49960379 Msa0074910:CDS 35.0%
! AGATACTTGTGAGACTGTTT+TGG + chr1_2:49960734-49960753 None:intergenic 35.0%
! TCAAAAAACTCAGGCTTGTT+TGG + chr1_2:49960791-49960810 None:intergenic 35.0%
CCAATGGTTTCAAAAAACTC+AGG + chr1_2:49960800-49960819 None:intergenic 35.0%
!!! CCTGAGTTTTTTGAAACCAT+TGG - chr1_2:49960797-49960816 Msa0074910:intron 35.0%
GTTTGGTACTCATTAGATTG+CGG - chr1_2:49960843-49960862 Msa0074910:intron 35.0%
! CGTGGATACATCTTTTATTG+TGG - chr1_2:49960912-49960931 Msa0074910:CDS 35.0%
!! TTGCTCATGCCTTTTAGTTA+TGG - chr1_2:49961039-49961058 Msa0074910:intron 35.0%
!! TGCTCATGCCTTTTAGTTAT+GGG - chr1_2:49961040-49961059 Msa0074910:intron 35.0%
TATACTTCGAATCAGTTGGT+GGG + chr1_2:49961182-49961201 None:intergenic 35.0%
TTATACTTCGAATCAGTTGG+TGG + chr1_2:49961183-49961202 None:intergenic 35.0%
TTAGATACCTGCAAAACACA+GGG + chr1_2:49961377-49961396 None:intergenic 35.0%
TTTAGATACCTGCAAAACAC+AGG + chr1_2:49961378-49961397 None:intergenic 35.0%
! TGTTTTGCAGGTATCTAAAG+AGG - chr1_2:49961379-49961398 Msa0074910:intron 35.0%
! GTTTTGCAGGTATCTAAAGA+GGG - chr1_2:49961380-49961399 Msa0074910:intron 35.0%
ACCGTTTACGTACATTATTG+TGG - chr1_2:49961409-49961428 Msa0074910:intron 35.0%
TTGTGGACAATGAAACGTAA+TGG - chr1_2:49961426-49961445 Msa0074910:intron 35.0%
TACTATCTTGACTTCTTCTC+TGG - chr1_2:49961470-49961489 Msa0074910:intron 35.0%
TGTGCAAAGATGATAAAGAC+AGG + chr1_2:49961589-49961608 None:intergenic 35.0%
AATGCGATGCATAAATTGGA+AGG - chr1_2:49961641-49961660 Msa0074910:intron 35.0%
TGAAGATCTTCAAGCATTTC+TGG - chr1_2:49961727-49961746 Msa0074910:CDS 35.0%
ACATCAGTGTTGTCAAATAG+TGG + chr1_2:49962017-49962036 None:intergenic 35.0%
!! GAGACTAATTGTTCAAGTTG+TGG - chr1_2:49962043-49962062 Msa0074910:intron 35.0%
AAGAAGGGTCATACTCATAT+AGG + chr1_2:49962107-49962126 None:intergenic 35.0%
AGATCCATACTTTATAGCAC+CGG - chr1_2:49962146-49962165 Msa0074910:intron 35.0%
! ACTCGATTCTGAAAGATCTT+GGG + chr1_2:49962253-49962272 None:intergenic 35.0%
! AACTCGATTCTGAAAGATCT+TGG + chr1_2:49962254-49962273 None:intergenic 35.0%
!! ATCGAGTTTGTTATCTGCAT+TGG - chr1_2:49962266-49962285 Msa0074910:intron 35.0%
!! AGTTTGTTATCTGCATTGGA+TGG - chr1_2:49962270-49962289 Msa0074910:intron 35.0%
TTTATAGGTGATAACCTCGT+GGG + chr1_2:49962349-49962368 None:intergenic 35.0%
ATTTATAGGTGATAACCTCG+TGG + chr1_2:49962350-49962369 None:intergenic 35.0%
ACTATCTCATGTTCAACCAT+TGG + chr1_2:49962543-49962562 None:intergenic 35.0%
TCACACTTTATCGTCTAAGT+CGG + chr1_2:49962574-49962593 None:intergenic 35.0%
GGGTGAAAAAAAGAAACAAC+AGG + chr1_2:49962674-49962693 None:intergenic 35.0%
! TTTCGCTTGCCTTATGTTTT+TGG - chr1_2:49962782-49962801 Msa0074910:intron 35.0%
! TTTTGCTTGTAAAGGAGGTT+GGG - chr1_2:49962960-49962979 Msa0074910:intron 35.0%
! ATCTTGTATTTTTCCAGTGC+AGG - chr1_2:49963026-49963045 Msa0074910:intron 35.0%
CCTTTCTGCATCAATTAAGA+TGG + chr1_2:49963070-49963089 None:intergenic 35.0%
CCATCTTAATTGATGCAGAA+AGG - chr1_2:49963067-49963086 Msa0074910:intron 35.0%
!!! ACTTTTTGTTTCTATACGCC+AGG - chr1_2:49963267-49963286 Msa0074910:intron 35.0%
!!! TAACATGTATTTTGGGGCAA+GGG + chr1_2:49963373-49963392 None:intergenic 35.0%
!!! TTAACATGTATTTTGGGGCA+AGG + chr1_2:49963374-49963393 None:intergenic 35.0%
AAAATTAGGGCAACCAGAAA+AGG + chr1_2:49963501-49963520 None:intergenic 35.0%
!!! CGCTTGTTTCTATCCTTTTA+AGG - chr1_2:49963678-49963697 Msa0074910:intron 35.0%
TTACGTTGGGTAACCTTAAA+AGG + chr1_2:49963694-49963713 None:intergenic 35.0%
GTTACCCAACGTAAAATTTG+TGG - chr1_2:49963700-49963719 Msa0074910:intron 35.0%
! ACAGCCACAAATTTTACGTT+GGG + chr1_2:49963707-49963726 None:intergenic 35.0%
! TACAGCCACAAATTTTACGT+TGG + chr1_2:49963708-49963727 None:intergenic 35.0%
GGTATGTGTAGATATGATTG+TGG - chr1_2:49963773-49963792 Msa0074910:intron 35.0%
AATTCCAACCTGCATATCAT+CGG - chr1_2:49963941-49963960 Msa0074910:CDS 35.0%
CTGCTTGTAGACCATAAAAA+TGG + chr1_2:49964039-49964058 None:intergenic 35.0%
!! CTTTAATTTTGCCACTGACT+GGG + chr1_2:49964397-49964416 None:intergenic 35.0%
GTTATCGGGAAACTATACAT+CGG - chr1_2:49964435-49964454 Msa0074910:CDS 35.0%
CTGCTAATGTGGTATGTTAA+TGG - chr1_2:49964716-49964735 Msa0074910:intron 35.0%
! TGCTTGGATAAGTTTGTTTG+AGG + chr1_2:49964833-49964852 None:intergenic 35.0%
! TAGGATACATTTGAAGTGCT+TGG + chr1_2:49964849-49964868 None:intergenic 35.0%
!! TGCATTTTAATGGGGATTTC+AGG - chr1_2:49964951-49964970 Msa0074910:intron 35.0%
CATTTATGTAAGAGAGAGGA+TGG - chr1_2:49965191-49965210 Msa0074910:CDS 35.0%
GATCCACTTCACTCACTTTA+TGG - chr1_2:49959522-49959541 Msa0074910:three_prime_UTR 40.0%
! AAAAGTGCAGAGATTCGACA+TGG + chr1_2:49959631-49959650 None:intergenic 40.0%
! TTCATTCCCGCCAAATTTTG+AGG - chr1_2:49959907-49959926 Msa0074910:intron 40.0%
AAAGGAAGCAACCTTCAAAG+TGG + chr1_2:49960055-49960074 None:intergenic 40.0%
!! CATTGATTCTACTTGACGCT+AGG + chr1_2:49960238-49960257 None:intergenic 40.0%
GCTGCTAGAATTGATTATGG+AGG + chr1_2:49960305-49960324 None:intergenic 40.0%
GGAGCTGCTAGAATTGATTA+TGG + chr1_2:49960308-49960327 None:intergenic 40.0%
!! GCTCCAAATGCTTTAAAGAG+TGG - chr1_2:49960323-49960342 Msa0074910:intron 40.0%
!!! AATTTTCAGGTTCAAGGTGG+TGG - chr1_2:49960363-49960382 Msa0074910:CDS 40.0%
TGTTTAGACCTAAACGAGCA+AGG + chr1_2:49960413-49960432 None:intergenic 40.0%
CTCGTTTAGGTCTAAACACA+AGG - chr1_2:49960415-49960434 Msa0074910:CDS 40.0%
AAACACAAGGCTCGTTTCTA+AGG - chr1_2:49960428-49960447 Msa0074910:CDS 40.0%
! TTAACAGTTTAGGCGCTGTT+TGG - chr1_2:49960519-49960538 Msa0074910:intron 40.0%
TAAAATGCACGCATACCCAA+TGG + chr1_2:49960816-49960835 None:intergenic 40.0%
CAAGAAATCAGGTACAGACT+TGG + chr1_2:49961121-49961140 None:intergenic 40.0%
GAGTGGATATGCAAGAAATC+AGG + chr1_2:49961132-49961151 None:intergenic 40.0%
! ATACTTCGAATCAGTTGGTG+GGG + chr1_2:49961181-49961200 None:intergenic 40.0%
AAATTTCAAAAGAGAGGGGG+AGG - chr1_2:49961508-49961527 Msa0074910:intron 40.0%
AATTTCAAAAGAGAGGGGGA+GGG - chr1_2:49961509-49961528 Msa0074910:intron 40.0%
CAATTTATGCATCGCATTGC+TGG + chr1_2:49961639-49961658 None:intergenic 40.0%
CAGCAATGCGATGCATAAAT+TGG - chr1_2:49961637-49961656 Msa0074910:intron 40.0%
TTGTGGATCGCAAGAAATAG+CGG - chr1_2:49961858-49961877 Msa0074910:intron 40.0%
AATAGCCTCTTGCAATTGCA+AGG - chr1_2:49962066-49962085 Msa0074910:intron 40.0%
GATCCATACTTTATAGCACC+GGG - chr1_2:49962147-49962166 Msa0074910:intron 40.0%
TATCATTGGAGGATATCCAG+GGG + chr1_2:49962229-49962248 None:intergenic 40.0%
GTATCATTGGAGGATATCCA+GGG + chr1_2:49962230-49962249 None:intergenic 40.0%
! GAAAGATCTTGGGGTATCAT+TGG + chr1_2:49962243-49962262 None:intergenic 40.0%
! CTCGATTCTGAAAGATCTTG+GGG + chr1_2:49962252-49962271 None:intergenic 40.0%
CATGTTCAACCATTGGCATT+GGG + chr1_2:49962536-49962555 None:intergenic 40.0%
TCATGTTCAACCATTGGCAT+TGG + chr1_2:49962537-49962556 None:intergenic 40.0%
TGCACTTGCAATATCCACTA+TGG + chr1_2:49962633-49962652 None:intergenic 40.0%
! AAATTACAGGGTATCCAACC+AGG - chr1_2:49962833-49962852 Msa0074910:intron 40.0%
! AATTACAGGGTATCCAACCA+GGG - chr1_2:49962834-49962853 Msa0074910:intron 40.0%
GATTCATAAAACACCCTGGT+TGG + chr1_2:49962850-49962869 None:intergenic 40.0%
! CTTTTGCTTGTAAAGGAGGT+TGG - chr1_2:49962959-49962978 Msa0074910:intron 40.0%
TAATTGATGCAGAAAGGCCA+AGG - chr1_2:49963073-49963092 Msa0074910:intron 40.0%
AATTGATGCAGAAAGGCCAA+GGG - chr1_2:49963074-49963093 Msa0074910:intron 40.0%
ATGCTCAGCTAAGTTTCCAA+AGG - chr1_2:49963137-49963156 Msa0074910:intron 40.0%
TTTATGACTGCTGACACCAA+TGG - chr1_2:49963461-49963480 Msa0074910:CDS 40.0%
GATAACCTTTCTTTGCTGAC+AGG - chr1_2:49963625-49963644 Msa0074910:intron 40.0%
! GCTGTAACTTTGGGAAAAGA+TGG - chr1_2:49963722-49963741 Msa0074910:intron 40.0%
GGTGGATGTAGACAACTTAT+TGG - chr1_2:49963884-49963903 Msa0074910:intron 40.0%
AGACAACTTATTGGAATCGC+TGG - chr1_2:49963893-49963912 Msa0074910:intron 40.0%
ATTACCGATGATATGCAGGT+TGG + chr1_2:49963948-49963967 None:intergenic 40.0%
TTGCATTACCGATGATATGC+AGG + chr1_2:49963952-49963971 None:intergenic 40.0%
CTTGGCAGAAAGATTTGGAA+TGG + chr1_2:49964015-49964034 None:intergenic 40.0%
CATTCCAAATCTTTCTGCCA+AGG - chr1_2:49964013-49964032 Msa0074910:intron 40.0%
!!! TTCTGCCAAGGCCATTTTTA+TGG - chr1_2:49964025-49964044 Msa0074910:intron 40.0%
GTAGACCATAAAAATGGCCT+TGG + chr1_2:49964033-49964052 None:intergenic 40.0%
GTGACATGTACTGAATGACT+TGG - chr1_2:49964271-49964290 Msa0074910:intron 40.0%
!! ATCCCTGAAGTTCTAGAAAC+AGG - chr1_2:49964294-49964313 Msa0074910:intron 40.0%
!! TCCCTGAAGTTCTAGAAACA+GGG - chr1_2:49964295-49964314 Msa0074910:intron 40.0%
!! TCCCTGTTTCTAGAACTTCA+GGG + chr1_2:49964299-49964318 None:intergenic 40.0%
!! ATCCCTGTTTCTAGAACTTC+AGG + chr1_2:49964300-49964319 None:intergenic 40.0%
!! CCTTTAATTTTGCCACTGAC+TGG + chr1_2:49964398-49964417 None:intergenic 40.0%
CCAGTCAGTGGCAAAATTAA+AGG - chr1_2:49964395-49964414 Msa0074910:intron 40.0%
GTGGCAAAATTAAAGGCAGA+AGG - chr1_2:49964402-49964421 Msa0074910:intron 40.0%
AAAGGCAGAAGGAATAGGAA+CGG - chr1_2:49964413-49964432 Msa0074910:intron 40.0%
GAAGGAATAGGAACGGTTAT+CGG - chr1_2:49964420-49964439 Msa0074910:intron 40.0%
AAGGAATAGGAACGGTTATC+GGG - chr1_2:49964421-49964440 Msa0074910:intron 40.0%
TTGCGAAAGACACAAATTGG+TGG + chr1_2:49964588-49964607 None:intergenic 40.0%
CCTTTGCGAAAGACACAAAT+TGG + chr1_2:49964591-49964610 None:intergenic 40.0%
CCAATTTGTGTCTTTCGCAA+AGG - chr1_2:49964588-49964607 Msa0074910:intron 40.0%
CATACCACATTAGCAGCAAA+GGG + chr1_2:49964712-49964731 None:intergenic 40.0%
ACATACCACATTAGCAGCAA+AGG + chr1_2:49964713-49964732 None:intergenic 40.0%
! TGTTTGAGGTTAGAGGTTAG+AGG + chr1_2:49964819-49964838 None:intergenic 40.0%
ACGTAACTCATATCTCCAAC+AGG + chr1_2:49964916-49964935 None:intergenic 40.0%
! TTTTAATGGGGATTTCAGGC+AGG - chr1_2:49964955-49964974 Msa0074910:intron 40.0%
ACTACTGAATAAAGGACGCT+AGG + chr1_2:49965038-49965057 None:intergenic 40.0%
TGGCCATAAAGTGAGTGAAG+TGG + chr1_2:49959528-49959547 None:intergenic 45.0%
GCAGAGATTCGACATGGTTA+CGG + chr1_2:49959625-49959644 None:intergenic 45.0%
AAAGAGAGGGAAACGCACAA+CGG + chr1_2:49959877-49959896 None:intergenic 45.0%
!! ATCAGTCACCGTCGATTTCT+TGG - chr1_2:49959984-49960003 Msa0074910:intron 45.0%
AACGGTAGCCAAGAAATCGA+CGG + chr1_2:49959995-49960014 None:intergenic 45.0%
TGGCTTAGGATAAGCAGCAA+CGG + chr1_2:49960013-49960032 None:intergenic 45.0%
GCGTCAAGTAGAATCAATGC+TGG - chr1_2:49960239-49960258 Msa0074910:intron 45.0%
!! AAGGCAGGTTAAAGCATTGC+CGG + chr1_2:49960394-49960413 None:intergenic 45.0%
TTAACCTGCCTTGCTCGTTT+AGG - chr1_2:49960402-49960421 Msa0074910:CDS 45.0%
GGGGCATATTAGATGAGCTA+CGG - chr1_2:49960881-49960900 Msa0074910:intron 45.0%
! TTAGATGAGCTACGGACTGA+TGG - chr1_2:49960889-49960908 Msa0074910:intron 45.0%
GAGAAATCAGGTGCAGACTA+GGG + chr1_2:49961099-49961118 None:intergenic 45.0%
GGTACAGACTTGGAGAAATC+AGG + chr1_2:49961111-49961130 None:intergenic 45.0%
! TTATGCTCCCTGTGTTTTGC+AGG - chr1_2:49961367-49961386 Msa0074910:intron 45.0%
ATTTCAAAAGAGAGGGGGAG+GGG - chr1_2:49961510-49961529 Msa0074910:intron 45.0%
GAGTTAGGTGGATCTAGTTG+AGG - chr1_2:49961540-49961559 Msa0074910:intron 45.0%
CAACTCTGCGAGTTATGCTA+AGG + chr1_2:49961809-49961828 None:intergenic 45.0%
TGTGGATCGCAAGAAATAGC+GGG - chr1_2:49961859-49961878 Msa0074910:intron 45.0%
TATGCTGTAGTGCTAGAGTG+CGG - chr1_2:49961897-49961916 Msa0074910:intron 45.0%
GCTATAGTGCTATAGAGTGG+CGG + chr1_2:49961993-49962012 None:intergenic 45.0%
! GGTGCTATAGTGCTATAGAG+TGG + chr1_2:49961996-49962015 None:intergenic 45.0%
CCATGGCAGGATACAAAGAA+GGG + chr1_2:49962122-49962141 None:intergenic 45.0%
AAAGTATGGATCTCCTGCCA+TGG + chr1_2:49962139-49962158 None:intergenic 45.0%
!! CAACCCGGTGCTATAAAGTA+TGG + chr1_2:49962153-49962172 None:intergenic 45.0%
CGAACTTGTATACATACCCC+TGG - chr1_2:49962210-49962229 Msa0074910:intron 45.0%
GGTATCATTGGAGGATATCC+AGG + chr1_2:49962231-49962250 None:intergenic 45.0%
! AGATCTTGGGGTATCATTGG+AGG + chr1_2:49962240-49962259 None:intergenic 45.0%
TTGTAAAGGAGGTTGGGAGT+GGG - chr1_2:49962966-49962985 Msa0074910:intron 45.0%
AGATCATCTAACCCTTCCCT+TGG + chr1_2:49963093-49963112 None:intergenic 45.0%
GGAATCGCTGGAGTTAAGAA+AGG - chr1_2:49963905-49963924 Msa0074910:intron 45.0%
! ATGGCCTTGGCAGAAAGATT+TGG + chr1_2:49964020-49964039 None:intergenic 45.0%
! TCCAGCATTGAGCCAATACA+AGG - chr1_2:49965061-49965080 Msa0074910:intron 45.0%
! CCAGCATTGAGCCAATACAA+GGG - chr1_2:49965062-49965081 Msa0074910:intron 45.0%
CATTGAGCCAATACAAGGGA+TGG - chr1_2:49965066-49965085 Msa0074910:intron 45.0%
ACTGAAGCCATCCCTTGTAT+TGG + chr1_2:49965076-49965095 None:intergenic 45.0%
AATACAAGGGATGGCTTCAG+TGG - chr1_2:49965075-49965094 Msa0074910:intron 45.0%
ATACAAGGGATGGCTTCAGT+GGG - chr1_2:49965076-49965095 Msa0074910:intron 45.0%
!! AAAACTATTAAAAAAAAAAA+AGG + chr1_2:49960073-49960092 None:intergenic 5.0%
! GTTCAAGGTGGTGGTAATGC+CGG - chr1_2:49960372-49960391 Msa0074910:CDS 50.0%
TAGACCTAAACGAGCAAGGC+AGG + chr1_2:49960409-49960428 None:intergenic 50.0%
CATCTAATATGCCCCTGCCT+GGG + chr1_2:49960876-49960895 None:intergenic 50.0%
TCATCTAATATGCCCCTGCC+TGG + chr1_2:49960877-49960896 None:intergenic 50.0%
GGAGAAATCAGGTGCAGACT+AGG + chr1_2:49961100-49961119 None:intergenic 50.0%
TTTCAAAAGAGAGGGGGAGG+GGG - chr1_2:49961511-49961530 Msa0074910:intron 50.0%
GGAAGCCTTGCAATTGCAAG+AGG + chr1_2:49962074-49962093 None:intergenic 50.0%
CCCTTCTTTGTATCCTGCCA+TGG - chr1_2:49962119-49962138 Msa0074910:intron 50.0%
GCCATGGCAGGATACAAAGA+AGG + chr1_2:49962123-49962142 None:intergenic 50.0%
TCTTTGTATCCTGCCATGGC+AGG - chr1_2:49962123-49962142 Msa0074910:intron 50.0%
GAATGAGTCAAAGGGCAACC+CGG + chr1_2:49962168-49962187 None:intergenic 50.0%
! TTGGCATTGGGATGATGAGC+TGG + chr1_2:49962524-49962543 None:intergenic 50.0%
GCTCATCATCCCAATGCCAA+TGG - chr1_2:49962524-49962543 Msa0074910:CDS 50.0%
CTTGTAAAGGAGGTTGGGAG+TGG - chr1_2:49962965-49962984 Msa0074910:intron 50.0%
TGTAAAGGAGGTTGGGAGTG+GGG - chr1_2:49962967-49962986 Msa0074910:intron 50.0%
! TTTTTCCAGTGCAGGCAGCT+AGG - chr1_2:49963034-49963053 Msa0074910:intron 50.0%
ATGCAGAAAGGCCAAGGGAA+GGG - chr1_2:49963079-49963098 Msa0074910:intron 50.0%
CCATGCCTGTCAGCAAAGAA+AGG + chr1_2:49963633-49963652 None:intergenic 50.0%
CCTTTCTTTGCTGACAGGCA+TGG - chr1_2:49963630-49963649 Msa0074910:intron 50.0%
AGGATAGAAACAAGCGCTCG+CGG + chr1_2:49963674-49963693 None:intergenic 50.0%
!! GTAGGACTTGCTGCCAGAAA+AGG + chr1_2:49963855-49963874 None:intergenic 50.0%
AGCAAGTCCTACCACAGAAG+AGG - chr1_2:49963863-49963882 Msa0074910:intron 50.0%
AAGTCCTACCACAGAAGAGG+TGG - chr1_2:49963866-49963885 Msa0074910:intron 50.0%
ACATCCACCTCTTCTGTGGT+AGG + chr1_2:49963873-49963892 None:intergenic 50.0%
GTCTACATCCACCTCTTCTG+TGG + chr1_2:49963877-49963896 None:intergenic 50.0%
TGTAGACTTGTAGCGCGAAC+TGG + chr1_2:49964103-49964122 None:intergenic 50.0%
GTGGTATCAACAAGCTCCGA+GGG + chr1_2:49964480-49964499 None:intergenic 50.0%
AGTGGTATCAACAAGCTCCG+AGG + chr1_2:49964481-49964500 None:intergenic 50.0%
!! TCGGAGCTTGTTGATACCAC+TGG - chr1_2:49964480-49964499 Msa0074910:CDS 50.0%
CTTGTTGATACCACTGGTGC+CGG - chr1_2:49964486-49964505 Msa0074910:intron 50.0%
TTGTTGATACCACTGGTGCC+GGG - chr1_2:49964487-49964506 Msa0074910:intron 50.0%
GCAAAGGGTAGCATTGTCTC+TGG + chr1_2:49964697-49964716 None:intergenic 50.0%
GCTACCCTTTGCTGCTAATG+TGG - chr1_2:49964705-49964724 Msa0074910:intron 50.0%
TGCTCCTAGATCTCTGCACT+TGG + chr1_2:49964983-49965002 None:intergenic 50.0%
! AGAGATCTAGGAGCACGAAG+CGG - chr1_2:49964988-49965007 Msa0074910:intron 50.0%
GAATAAAGGACGCTAGGCGT+GGG + chr1_2:49965032-49965051 None:intergenic 50.0%
TGAATAAAGGACGCTAGGCG+TGG + chr1_2:49965033-49965052 None:intergenic 50.0%
!! CCCTTGTATTGGCTCAATGC+TGG + chr1_2:49965065-49965084 None:intergenic 50.0%
TACAAGGGATGGCTTCAGTG+GGG - chr1_2:49965077-49965096 Msa0074910:intron 50.0%
!! AACGGTGGCGCTTTGAGGAA+CGG + chr1_2:49959859-49959878 None:intergenic 55.0%
GTACACGCACGTGCTTATGC+AGG - chr1_2:49959951-49959970 Msa0074910:intron 55.0%
ACGCACGTGCTTATGCAGGT+CGG - chr1_2:49959955-49959974 Msa0074910:intron 55.0%
GTGCTTATGCAGGTCGGTTG+TGG - chr1_2:49959961-49959980 Msa0074910:intron 55.0%
TAGATTGCGGATGACAGCCC+AGG - chr1_2:49960856-49960875 Msa0074910:intron 55.0%
TTCAAAAGAGAGGGGGAGGG+GGG - chr1_2:49961512-49961531 Msa0074910:intron 55.0%
TATGGATCTCCTGCCATGGC+AGG + chr1_2:49962135-49962154 None:intergenic 55.0%
TGCTCTAGTTGTTGCCCACG+AGG - chr1_2:49962332-49962351 Msa0074910:intron 55.0%
GTAAAGGAGGTTGGGAGTGG+GGG - chr1_2:49962968-49962987 Msa0074910:intron 55.0%
TTCTTCCTAGCTGCCTGCAC+TGG + chr1_2:49963042-49963061 None:intergenic 55.0%
GATGCAGAAAGGCCAAGGGA+AGG - chr1_2:49963078-49963097 Msa0074910:intron 55.0%
TTGCTGACAGGCATGGACAG+AGG - chr1_2:49963637-49963656 Msa0074910:intron 55.0%
!! CTGCTCGAGAGAAGTGTCAG+TGG - chr1_2:49963752-49963771 Msa0074910:intron 55.0%
CTGACTGGGTGCAAGGGAAA+AGG + chr1_2:49964383-49964402 None:intergenic 55.0%
TTTCCCTTGCACCCAGTCAG+TGG - chr1_2:49964383-49964402 Msa0074910:intron 55.0%
! TTGCCACTGACTGGGTGCAA+GGG + chr1_2:49964389-49964408 None:intergenic 55.0%
! TTTGCCACTGACTGGGTGCA+AGG + chr1_2:49964390-49964409 None:intergenic 55.0%
GTATCAACAAGCTCCGAGGG+CGG + chr1_2:49964477-49964496 None:intergenic 55.0%
! TGTTGATACCACTGGTGCCG+GGG - chr1_2:49964488-49964507 Msa0074910:intron 55.0%
GGTGCCAAGTGCAGAGATCT+AGG - chr1_2:49964976-49964995 Msa0074910:intron 55.0%
GAGAGGGAAACGCACAACGG+TGG + chr1_2:49959874-49959893 None:intergenic 60.0%
! TGAGCTACGGACTGATGGCG+TGG - chr1_2:49960894-49960913 Msa0074910:intron 60.0%
!! GTGGGGTTCTGGACTGCCAA+TGG - chr1_2:49961307-49961326 Msa0074910:intron 60.0%
! AGGGGGGAGCATGAGTTAGG+TGG - chr1_2:49961528-49961547 Msa0074910:intron 60.0%
!! AGCTGAGAGCATTCCGCCCT+CGG - chr1_2:49964461-49964480 Msa0074910:CDS 60.0%
!! GGTGGCGCTTTGAGGAACGG+AGG + chr1_2:49959856-49959875 None:intergenic 65.0%
CGCACAACGGTGGCGCTTTG+AGG + chr1_2:49959864-49959883 None:intergenic 65.0%
TTGCGGATGACAGCCCAGGC+AGG - chr1_2:49960860-49960879 Msa0074910:intron 65.0%
TGCGGATGACAGCCCAGGCA+GGG - chr1_2:49960861-49960880 Msa0074910:intron 65.0%
! GGGAGGGGGGAGCATGAGTT+AGG - chr1_2:49961525-49961544 Msa0074910:intron 65.0%
GCGGATGACAGCCCAGGCAG+GGG - chr1_2:49960862-49960881 Msa0074910:intron 70.0%
AGGCGTGGGTCTGCGCGGTA+TGG + chr1_2:49965018-49965037 None:intergenic 70.0%
ACGCTAGGCGTGGGTCTGCG+CGG + chr1_2:49965023-49965042 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 49959513 49965358 49959513 ID=Msa0074910;Name=Msa0074910
chr1_2 mRNA 49959513 49965358 49959513 ID=Msa0074910-mRNA-1;Parent=Msa0074910;Name=Msa0074910-mRNA-1;_AED=0.33;_eAED=0.33;_QI=117|1|1|1|1|1|13|302|405
chr1_2 exon 49959513 49959898 49959513 ID=Msa0074910-mRNA-1:exon:15332;Parent=Msa0074910-mRNA-1
chr1_2 exon 49960145 49960197 49960145 ID=Msa0074910-mRNA-1:exon:15331;Parent=Msa0074910-mRNA-1
chr1_2 exon 49960334 49960472 49960334 ID=Msa0074910-mRNA-1:exon:15330;Parent=Msa0074910-mRNA-1
chr1_2 exon 49960909 49961006 49960909 ID=Msa0074910-mRNA-1:exon:15329;Parent=Msa0074910-mRNA-1
chr1_2 exon 49961098 49961224 49961098 ID=Msa0074910-mRNA-1:exon:15328;Parent=Msa0074910-mRNA-1
chr1_2 exon 49961713 49961823 49961713 ID=Msa0074910-mRNA-1:exon:15327;Parent=Msa0074910-mRNA-1
chr1_2 exon 49962518 49962668 49962518 ID=Msa0074910-mRNA-1:exon:15326;Parent=Msa0074910-mRNA-1
chr1_2 exon 49963430 49963482 49963430 ID=Msa0074910-mRNA-1:exon:15325;Parent=Msa0074910-mRNA-1
chr1_2 exon 49963938 49964012 49963938 ID=Msa0074910-mRNA-1:exon:15324;Parent=Msa0074910-mRNA-1
chr1_2 exon 49964422 49964499 49964422 ID=Msa0074910-mRNA-1:exon:15323;Parent=Msa0074910-mRNA-1
chr1_2 exon 49964809 49964898 49964809 ID=Msa0074910-mRNA-1:exon:15322;Parent=Msa0074910-mRNA-1
chr1_2 exon 49964993 49965064 49964993 ID=Msa0074910-mRNA-1:exon:15321;Parent=Msa0074910-mRNA-1
chr1_2 exon 49965155 49965358 49965155 ID=Msa0074910-mRNA-1:exon:15320;Parent=Msa0074910-mRNA-1
chr1_2 five_prime_UTR 49965242 49965358 49965242 ID=Msa0074910-mRNA-1:five_prime_utr;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49965155 49965241 49965155 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49964993 49965064 49964993 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49964809 49964898 49964809 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49964422 49964499 49964422 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49963938 49964012 49963938 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49963430 49963482 49963430 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49962518 49962668 49962518 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49961713 49961823 49961713 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49961098 49961224 49961098 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49960909 49961006 49960909 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49960334 49960472 49960334 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49960145 49960197 49960145 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 CDS 49959815 49959898 49959815 ID=Msa0074910-mRNA-1:cds;Parent=Msa0074910-mRNA-1
chr1_2 three_prime_UTR 49959513 49959814 49959513 ID=Msa0074910-mRNA-1:three_prime_utr;Parent=Msa0074910-mRNA-1
Gene Sequence

>Msa0074910

ATGTCGAATCTCTGCACTTTTTCTTCTAATATTTCTTCTTCTTCAACTTTCATCTTCAACAATATTCAACATCTCAAATTCTACAATTTAACAAGGAATCATCGCAGTAGAAATTTGAAGGTCAAAATGTGCTCCTCCGTTCCTCAAAGCGCCACCGTTGTCGGTTGTGGATCAGTCACCGTCGATTTCTTGGCTACCGTTGCTGCTTATCCTAAGCCAGATGATAAAATCAGAACAACCACTTTGAAGGTTCAAGGTGGTGGTAATGCCGGCAATGCTTTAACCTGCCTTGCTCGTTTAGGTCTAAACACAAGGCTCGTTTCTAAGATTGCGGATGACAGCCCAGGCAGGGGCATATTAGATGAGCTACGGACTGATGGCGTGGATACATCTTTTATTGTGGTATCTAAAGAGGGAACTTCACCGTTTACGTACATTATTGTGGACAATGAAACGAAGACTCGAACTTGTATACATACCCCTGGATATCCTCCAATGATACCCCAAGATCTTTCAGAATCGAGTTTGTTATCTGCATTGGATGGAGCAAGCATTGTATATTTTGACGGGAGATTGTATGAAACTGCTCTAGTTGTTGCCCACGAGGCAGCTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTAGATGATCTCCTGAAATTAGCTGATTATGTTGTATGCTCAGCTAAGTTTCCAAAGGCATGGACAGAGGCATCAACTGTTCCGCGAGCGCTTGTTTCTATCCTTTTAAGGTTACCCAACGTAAAATTTGTGGCTGTAACTTTGGGAAAAGATGGTTGTATACTGCTCGAGAGAAGTGTCAGTGCAAGTCCTACCACAGAAGAGGTGGATGTAGACAACTTATTGGAATCGCTGGAGTTAAGAAAGGATAAGAGTGCATCAATTCCAACCTGCATATCATCGTCAGTGGCAAAATTAAAGGCAGAAGGAATAGGAACGGTTATCGGGAAACTATACATCGGTACAGCTGAGAGCATTCCGCCCTCGGAGCTTGTTGATACCACTGGTGCCGGGGATGCATTTATTGGATCTGTGATCTATGCTATTTGTTCGAAGTTCTCACCAGAGACAATGCTACCCTTTGCTGCTAATGTGGCAGGTGCCAAGTGCAGAGATCTAGGAGCACGAAGCGGTCTTCCATACCGCGCAGACCCACGCCTAGCGTCCTTTATTCAGTAG

Protein sequence

>Msa0074910

MSNLCTFSSNISSSSTFIFNNIQHLKFYNLTRNHRSRNLKVKMCSSVPQSATVVGCGSVTVDFLATVAAYPKPDDKIRTTTLKVQGGGNAGNALTCLARLGLNTRLVSKIADDSPGRGILDELRTDGVDTSFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLSALDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPRALVSILLRLPNVKFVAVTLGKDGCILLERSVSASPTTEEVDVDNLLESLELRKDKSASIPTCISSSVAKLKAEGIGTVIGKLYIGTAESIPPSELVDTTGAGDAFIGSVIYAICSKFSPETMLPFAANVAGAKCRDLGARSGLPYRADPRLASFIQ*