AlfalfaGEDB | Msa0598810

M. sativa cultivar zhongmu-4 / Msa0598810

KEGG: -
GO: -
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598810	XP_013455584.1	97.403	154	4	0	1	154	1	154	1.68e-107	313

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598810	sp\|O05517\|RIMI_BACSU	29.600	125	87	1	17	141	15	138	1.60e-11	61.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0598810	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0025730	Msa0598810	0.806640	7.455964e-50	-8.615850e-47
Msa0029270	Msa0598810	0.810744	9.899007e-51	-8.615850e-47
Msa0032090	Msa0598810	0.804212	2.407376e-49	-8.615850e-47
Msa0032430	Msa0598810	0.805066	1.597170e-49	-8.615850e-47
Msa0032580	Msa0598810	0.839093	1.946791e-57	-8.615850e-47
Msa0040690	Msa0598810	0.801040	1.085920e-48	-8.615850e-47
Msa0058300	Msa0598810	0.800638	1.312175e-48	-8.615850e-47
Msa0076320	Msa0598810	0.802347	5.857756e-49	-8.615850e-47
Msa0080200	Msa0598810	0.835168	1.962786e-56	-8.615850e-47
Msa0091570	Msa0598810	0.802318	5.939531e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598810	MtrunA17_Chr4g0022511	97.403	154	4	0	1	154	1	154	1.55e-111	313

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598810	AT1G03650.1	69.079	152	44	1	6	154	6	157	1.10e-74	220

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Find 41 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTTATAGAATGTACT+TGG	0.517363	4_2:+36554564	Msa0598810:CDS
AAGGAGCAATGGAGGAGGCA+AGG	0.528602	4_2:+36554376	Msa0598810:CDS
ACATGACATAACCTGCAAGT+TGG	0.533996	4_2:-36553388	None:intergenic
AGGAGCAATGGAGGAGGCAA+GGG	0.571699	4_2:+36554377	Msa0598810:CDS
AGGGCATGGAGAGGTTCTAC+TGG	0.510423	4_2:+36554396	Msa0598810:CDS
AGTGGAAGAGATAGTGAAAT+TGG	0.247431	4_2:+36553268	Msa0598810:CDS
ATAGAAGCATACAATGAAGA+AGG	0.562971	4_2:-36553419	None:intergenic
CAATGGAGGAGGCAAGGGCA+TGG	0.517572	4_2:+36554382	Msa0598810:CDS
CACGTTGATGCCCAACTTGC+AGG	0.261704	4_2:+36553377	Msa0598810:CDS
CAGAAACAGTGGTAAAGTAG+TGG	0.572015	4_2:+36553250	Msa0598810:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCCAGAATTATTATAAAACC+TGG	+	chr4_2:36553746-36553765	Msa0598810:intron	30.0%
AATTTGCAACCCATTTATAG+GGG	+	chr4_2:36553777-36553796	Msa0598810:intron	30.0%
CTTATGTAAACCCCTATAAA+TGG	-	chr4_2:36553790-36553809	None:intergenic	30.0%
AAATTGCAAAAACATTCAGC+CGG	+	chr4_2:36553896-36553915	Msa0598810:intron	30.0%
TAATACATCAACTTAGTCGT+TGG	+	chr4_2:36553985-36554004	Msa0598810:intron	30.0%
CATACAAGCATTTCATTAGT+TGG	-	chr4_2:36554285-36554304	None:intergenic	30.0%
CACAATATGGGTATGTAATA+TGG	+	chr4_2:36554330-36554349	Msa0598810:intron	30.0%
GCCAGAATTATTATAAAACC+TGG	+	chr4_2:36553746-36553765	Msa0598810:intron	30.0%
AATTTGCAACCCATTTATAG+GGG	+	chr4_2:36553777-36553796	Msa0598810:intron	30.0%
CTTATGTAAACCCCTATAAA+TGG	-	chr4_2:36553790-36553809	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	36553085	36554787	36553085	ID=Msa0598810;Name=Msa0598810
chr4_2	mRNA	36553085	36554787	36553085	ID=Msa0598810-mRNA-1;Parent=Msa0598810;Name=Msa0598810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=136\|1\|1\|1\|1\|1\|2\|184\|154
chr4_2	exon	36553085	36553455	36553085	ID=Msa0598810-mRNA-1:exon:8271;Parent=Msa0598810-mRNA-1
chr4_2	exon	36554374	36554787	36554374	ID=Msa0598810-mRNA-1:exon:8272;Parent=Msa0598810-mRNA-1
chr4_2	five_prime_UTR	36553085	36553220	36553085	ID=Msa0598810-mRNA-1:five_prime_utr;Parent=Msa0598810-mRNA-1
chr4_2	CDS	36553221	36553455	36553221	ID=Msa0598810-mRNA-1:cds;Parent=Msa0598810-mRNA-1
chr4_2	CDS	36554374	36554603	36554374	ID=Msa0598810-mRNA-1:cds;Parent=Msa0598810-mRNA-1
chr4_2	three_prime_UTR	36554604	36554787	36554604	ID=Msa0598810-mRNA-1:three_prime_utr;Parent=Msa0598810-mRNA-1

Gene Sequence

>Msa0598810

ATGGCAACTGTGGAGATTTTAGAACTTGACAGAAACAGTGGTAAAGTAGTGGAAGAGATAGTGAAATTGGAGAGAAAGATATTTCCCAAACACGAATCACTCGCTTCCTTCTTTGAAAATGAACTCAAAAAGAAGAACAGTGGATTGCTTTATCTTCACGTTGATGCCCAACTTGCAGGTTATGTCATGTATTCTTGGCCTTCTTCATTGTATGCTTCTATCACCAAGCTCGCAGTGAAGGAGCAATGGAGGAGGCAAGGGCATGGAGAGGTTCTACTGGAAGCGGCAATCGAGAAATGCAGAACAAGAAAAGTTTCGCGGATAATGCTTCACGTCGATCCGTTGAGGACCCCTGCGCTGAATCTGTACAAGAAGCATGGCTTTCATGTTGACTGTTTGGTTGAAGGCTATTACTCTTCTGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAATTGA

Protein sequence

>Msa0598810

MATVEILELDRNSGKVVEEIVKLERKIFPKHESLASFFENELKKKNSGLLYLHVDAQLAGYVMYSWPSSLYASITKLAVKEQWRRQGHGEVLLEAAIEKCRTRKVSRIMLHVDPLRTPALNLYKKHGFHVDCLVEGYYSSDRNAYRMYLDFDSN*