AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598810 MtrunA17_Chr4g0022511 97.403 154 4 0 1 154 1 154 1.55e-111 313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598810 AT1G03650.1 69.079 152 44 1 6 154 6 157 1.10e-74 220

Find 41 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAACGGTGACAATATTT+AGG 0.161108 4_2:-36553146 None:intergenic
CAGGTTATGTCATGTATTCT+TGG 0.193464 4_2:+36553396 Msa0598810:CDS
AGTGGAAGAGATAGTGAAAT+TGG 0.247431 4_2:+36553268 Msa0598810:CDS
CACGTTGATGCCCAACTTGC+AGG 0.261704 4_2:+36553377 Msa0598810:CDS
TTAAACAAACACAATATTAC+AGG 0.325566 4_2:-36554704 None:intergenic
CATGTTGACTGTTTGGTTGA+AGG 0.355783 4_2:+36554523 Msa0598810:CDS
GAAGCGAGTGATTCGTGTTT+GGG 0.367842 4_2:-36553305 None:intergenic
GGAAGCGAGTGATTCGTGTT+TGG 0.373847 4_2:-36553306 None:intergenic
TGGCTTTCATGTTGACTGTT+TGG 0.383570 4_2:+36554516 Msa0598810:CDS
TGCAACGGTGACAATATTTA+GGG 0.394824 4_2:-36553145 None:intergenic
CATGACATAACCTGCAAGTT+GGG 0.434152 4_2:-36553387 None:intergenic
TGGACTTCGATTCAAATTGA+AGG 0.474763 4_2:+36554584 Msa0598810:CDS
TATTTGATGGACTAAATTGA+CGG 0.491712 4_2:-36553100 None:intergenic
AGGGCATGGAGAGGTTCTAC+TGG 0.510423 4_2:+36554396 Msa0598810:CDS
AAATGCTTATAGAATGTACT+TGG 0.517363 4_2:+36554564 Msa0598810:CDS
CAATGGAGGAGGCAAGGGCA+TGG 0.517572 4_2:+36554382 Msa0598810:CDS
TTGATTCTATTTCTCTGCAA+CGG 0.519902 4_2:-36553160 None:intergenic
TCTTGTACAGATTCAGCGCA+GGG 0.523854 4_2:-36554489 None:intergenic
AAGGAGCAATGGAGGAGGCA+AGG 0.528602 4_2:+36554376 Msa0598810:CDS
ACATGACATAACCTGCAAGT+TGG 0.533996 4_2:-36553388 None:intergenic
GGAGTTGGAACCTGCGAGCT+TGG 0.538376 4_2:-36553444 None:intergenic
GCAGAACAAGAAAAGTTTCG+CGG 0.541873 4_2:+36554437 Msa0598810:CDS
TGGAGAGGTTCTACTGGAAG+CGG 0.545320 4_2:+36554402 Msa0598810:CDS
GCTTCTATCACCAAGCTCGC+AGG 0.549548 4_2:+36553434 Msa0598810:CDS
TTCTTGTACAGATTCAGCGC+AGG 0.552919 4_2:-36554490 None:intergenic
TGCTTCACGTCGATCCGTTG+AGG 0.562820 4_2:+36554464 Msa0598810:CDS
ATAGAAGCATACAATGAAGA+AGG 0.562971 4_2:-36553419 None:intergenic
TCACGCTCACGCACGAGTGA+TGG 0.564291 4_2:+36553202 Msa0598810:exon
AGGAGCAATGGAGGAGGCAA+GGG 0.571699 4_2:+36554377 Msa0598810:CDS
CAGAAACAGTGGTAAAGTAG+TGG 0.572015 4_2:+36553250 Msa0598810:CDS
CTTCTGTAGTGAAGGAGCAA+TGG 0.596774 4_2:+36554365 Msa0598810:intron
CTGAATCTGTACAAGAAGCA+TGG 0.599242 4_2:+36554496 Msa0598810:CDS
CTGTAGTGAAGGAGCAATGG+AGG 0.602271 4_2:+36554368 Msa0598810:intron
TAGTGAAGGAGCAATGGAGG+AGG 0.603189 4_2:+36554371 Msa0598810:intron
GGAACATTGTGTTTGTAACA+TGG 0.606394 4_2:+36554664 Msa0598810:three_prime_UTR
CGCACGAGTGATGGCAACTG+TGG 0.609912 4_2:+36553211 Msa0598810:exon
TTCAGCGCAGGGGTCCTCAA+CGG 0.614591 4_2:-36554478 None:intergenic
GGAACATTGTGTTTGTGACA+TGG 0.627922 4_2:+36554744 Msa0598810:three_prime_UTR
TTAGAACTTGACAGAAACAG+TGG 0.638839 4_2:+36553239 Msa0598810:CDS
GAGGAGGCAAGGGCATGGAG+AGG 0.640974 4_2:+36554387 Msa0598810:CDS
CTTGTACAGATTCAGCGCAG+GGG 0.671497 4_2:-36554488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAACTATCTTTAATATA+AGG + chr4_2:36554226-36554245 Msa0598810:intron 10.0%
!! ATTAACTATCTTTAATATAA+GGG + chr4_2:36554227-36554246 Msa0598810:intron 10.0%
!! AATTAACTATCTTTAATATA+AGG + chr4_2:36554226-36554245 Msa0598810:intron 10.0%
!! ATTAACTATCTTTAATATAA+GGG + chr4_2:36554227-36554246 Msa0598810:intron 10.0%
!!! ATAGATTTTCATATATTTGA+TGG - chr4_2:36553116-36553135 None:intergenic 15.0%
!! AAAGAAATTATCCAATTTAT+AGG + chr4_2:36553838-36553857 Msa0598810:intron 15.0%
!! AAGAAATTATCCAATTTATA+GGG + chr4_2:36553839-36553858 Msa0598810:intron 15.0%
!!! ATAGATTTTCATATATTTGA+TGG - chr4_2:36553116-36553135 None:intergenic 15.0%
!! AAAGAAATTATCCAATTTAT+AGG + chr4_2:36553838-36553857 Msa0598810:intron 15.0%
!! AAGAAATTATCCAATTTATA+GGG + chr4_2:36553839-36553858 Msa0598810:intron 15.0%
!! AGAAATTATCCAATTTATAG+GGG + chr4_2:36553840-36553859 Msa0598810:intron 20.0%
!! TTATATTAACCCCTATAAAT+TGG - chr4_2:36553852-36553871 None:intergenic 20.0%
!! TTAAACAAACACAATATTAC+AGG - chr4_2:36554707-36554726 None:intergenic 20.0%
!! AGAAATTATCCAATTTATAG+GGG + chr4_2:36553840-36553859 Msa0598810:intron 20.0%
!! TTATATTAACCCCTATAAAT+TGG - chr4_2:36553852-36553871 None:intergenic 20.0%
!! TTAAACAAACACAATATTAC+AGG - chr4_2:36554707-36554726 None:intergenic 20.0%
!!! TATTTGATGGACTAAATTGA+CGG - chr4_2:36553103-36553122 None:intergenic 25.0%
!!! TTTGAGTTCATTTTCAAAGA+AGG - chr4_2:36553330-36553349 None:intergenic 25.0%
!!! CAATTTTTCAAACAGCTTAT+AGG - chr4_2:36553496-36553515 None:intergenic 25.0%
! CCAGAATTATTATAAAACCT+GGG + chr4_2:36553747-36553766 Msa0598810:intron 25.0%
! AAAATTTGCAACCCATTTAT+AGG + chr4_2:36553775-36553794 Msa0598810:intron 25.0%
! AAATTTGCAACCCATTTATA+GGG + chr4_2:36553776-36553795 Msa0598810:intron 25.0%
! TTATGTAAACCCCTATAAAT+GGG - chr4_2:36553789-36553808 None:intergenic 25.0%
! CTAAACTATTGAAAGATAGT+AGG - chr4_2:36554022-36554041 None:intergenic 25.0%
! ATACAAGCATTTCATTAGTT+GGG - chr4_2:36554284-36554303 None:intergenic 25.0%
! ACAATATGGGTATGTAATAT+GGG + chr4_2:36554331-36554350 Msa0598810:intron 25.0%
! AAATGCTTATAGAATGTACT+TGG + chr4_2:36554564-36554583 Msa0598810:CDS 25.0%
!! CACTTTTATATACGTTATCA+TGG + chr4_2:36554621-36554640 Msa0598810:three_prime_UTR 25.0%
! GTCAATTCAAAAAACAGATT+TGG + chr4_2:36554643-36554662 Msa0598810:three_prime_UTR 25.0%
! TTAAGCACTAAAAACAAATC+TGG + chr4_2:36554723-36554742 Msa0598810:three_prime_UTR 25.0%
!!! TATTTGATGGACTAAATTGA+CGG - chr4_2:36553103-36553122 None:intergenic 25.0%
!!! TTTGAGTTCATTTTCAAAGA+AGG - chr4_2:36553330-36553349 None:intergenic 25.0%
!!! CAATTTTTCAAACAGCTTAT+AGG - chr4_2:36553496-36553515 None:intergenic 25.0%
! CCAGAATTATTATAAAACCT+GGG + chr4_2:36553747-36553766 Msa0598810:intron 25.0%
! AAAATTTGCAACCCATTTAT+AGG + chr4_2:36553775-36553794 Msa0598810:intron 25.0%
! AAATTTGCAACCCATTTATA+GGG + chr4_2:36553776-36553795 Msa0598810:intron 25.0%
! TTATGTAAACCCCTATAAAT+GGG - chr4_2:36553789-36553808 None:intergenic 25.0%
! CTAAACTATTGAAAGATAGT+AGG - chr4_2:36554022-36554041 None:intergenic 25.0%
! ATACAAGCATTTCATTAGTT+GGG - chr4_2:36554284-36554303 None:intergenic 25.0%
! ACAATATGGGTATGTAATAT+GGG + chr4_2:36554331-36554350 Msa0598810:intron 25.0%
! AAATGCTTATAGAATGTACT+TGG + chr4_2:36554564-36554583 Msa0598810:CDS 25.0%
!! CACTTTTATATACGTTATCA+TGG + chr4_2:36554621-36554640 Msa0598810:three_prime_UTR 25.0%
! GTCAATTCAAAAAACAGATT+TGG + chr4_2:36554643-36554662 Msa0598810:three_prime_UTR 25.0%
! TTAAGCACTAAAAACAAATC+TGG + chr4_2:36554723-36554742 Msa0598810:three_prime_UTR 25.0%
! TTGATTCTATTTCTCTGCAA+CGG - chr4_2:36553163-36553182 None:intergenic 30.0%
! ATAGAAGCATACAATGAAGA+AGG - chr4_2:36553422-36553441 None:intergenic 30.0%
GCCAGAATTATTATAAAACC+TGG + chr4_2:36553746-36553765 Msa0598810:intron 30.0%
!! CCCAGGTTTTATAATAATTC+TGG - chr4_2:36553750-36553769 None:intergenic 30.0%
AATTTGCAACCCATTTATAG+GGG + chr4_2:36553777-36553796 Msa0598810:intron 30.0%
CTTATGTAAACCCCTATAAA+TGG - chr4_2:36553790-36553809 None:intergenic 30.0%
AAATTGCAAAAACATTCAGC+CGG + chr4_2:36553896-36553915 Msa0598810:intron 30.0%
!! ACTAAGTTGATGTATTAAGG+GGG - chr4_2:36553982-36554001 None:intergenic 30.0%
!! GACTAAGTTGATGTATTAAG+GGG - chr4_2:36553983-36554002 None:intergenic 30.0%
!! CGACTAAGTTGATGTATTAA+GGG - chr4_2:36553984-36554003 None:intergenic 30.0%
!! ACGACTAAGTTGATGTATTA+AGG - chr4_2:36553985-36554004 None:intergenic 30.0%
TAATACATCAACTTAGTCGT+TGG + chr4_2:36553985-36554004 Msa0598810:intron 30.0%
CATACAAGCATTTCATTAGT+TGG - chr4_2:36554285-36554304 None:intergenic 30.0%
! TTTGTTGGTTACTCACAATA+TGG + chr4_2:36554317-36554336 Msa0598810:intron 30.0%
! TTGTTGGTTACTCACAATAT+GGG + chr4_2:36554318-36554337 Msa0598810:intron 30.0%
CACAATATGGGTATGTAATA+TGG + chr4_2:36554330-36554349 Msa0598810:intron 30.0%
! GTATGTAATATGGGATGTTT+TGG + chr4_2:36554340-36554359 Msa0598810:intron 30.0%
! TTGATTCTATTTCTCTGCAA+CGG - chr4_2:36553163-36553182 None:intergenic 30.0%
! ATAGAAGCATACAATGAAGA+AGG - chr4_2:36553422-36553441 None:intergenic 30.0%
GCCAGAATTATTATAAAACC+TGG + chr4_2:36553746-36553765 Msa0598810:intron 30.0%
!! CCCAGGTTTTATAATAATTC+TGG - chr4_2:36553750-36553769 None:intergenic 30.0%
AATTTGCAACCCATTTATAG+GGG + chr4_2:36553777-36553796 Msa0598810:intron 30.0%
CTTATGTAAACCCCTATAAA+TGG - chr4_2:36553790-36553809 None:intergenic 30.0%
AAATTGCAAAAACATTCAGC+CGG + chr4_2:36553896-36553915 Msa0598810:intron 30.0%
!! ACTAAGTTGATGTATTAAGG+GGG - chr4_2:36553982-36554001 None:intergenic 30.0%
!! GACTAAGTTGATGTATTAAG+GGG - chr4_2:36553983-36554002 None:intergenic 30.0%
!! CGACTAAGTTGATGTATTAA+GGG - chr4_2:36553984-36554003 None:intergenic 30.0%
!! ACGACTAAGTTGATGTATTA+AGG - chr4_2:36553985-36554004 None:intergenic 30.0%
TAATACATCAACTTAGTCGT+TGG + chr4_2:36553985-36554004 Msa0598810:intron 30.0%
CATACAAGCATTTCATTAGT+TGG - chr4_2:36554285-36554304 None:intergenic 30.0%
! TTTGTTGGTTACTCACAATA+TGG + chr4_2:36554317-36554336 Msa0598810:intron 30.0%
! TTGTTGGTTACTCACAATAT+GGG + chr4_2:36554318-36554337 Msa0598810:intron 30.0%
CACAATATGGGTATGTAATA+TGG + chr4_2:36554330-36554349 Msa0598810:intron 30.0%
! GTATGTAATATGGGATGTTT+TGG + chr4_2:36554340-36554359 Msa0598810:intron 30.0%
TGCAACGGTGACAATATTTA+GGG - chr4_2:36553148-36553167 None:intergenic 35.0%
TTAGAACTTGACAGAAACAG+TGG + chr4_2:36553239-36553258 Msa0598810:CDS 35.0%
AGTGGAAGAGATAGTGAAAT+TGG + chr4_2:36553268-36553287 Msa0598810:CDS 35.0%
GAACTCAAAAAGAAGAACAG+TGG + chr4_2:36553341-36553360 Msa0598810:CDS 35.0%
CAGGTTATGTCATGTATTCT+TGG + chr4_2:36553396-36553415 Msa0598810:CDS 35.0%
AGCATAAAAAAGAGTGGAGT+TGG - chr4_2:36553462-36553481 None:intergenic 35.0%
CTTGACAGCATAAAAAAGAG+TGG - chr4_2:36553468-36553487 None:intergenic 35.0%
! TTTTGTAAGTGTGACTCAGT+TGG + chr4_2:36553659-36553678 Msa0598810:intron 35.0%
!!! GTTGCAAATTTTTTTTGCCC+AGG - chr4_2:36553767-36553786 None:intergenic 35.0%
TGATTTGAGCAAAAGGCTAA+AGG - chr4_2:36553949-36553968 None:intergenic 35.0%
!! ACTCAACTGATTTGAGCAAA+AGG - chr4_2:36553956-36553975 None:intergenic 35.0%
TTGTGTGTGTGAATTTCATG+TGG - chr4_2:36554136-36554155 None:intergenic 35.0%
CATTGTCGATATAGTTAGGT+TGG - chr4_2:36554193-36554212 None:intergenic 35.0%
CTGACATTGTCGATATAGTT+AGG - chr4_2:36554197-36554216 None:intergenic 35.0%
CTATATCGACAATGTCAGTT+AGG + chr4_2:36554199-36554218 Msa0598810:intron 35.0%
!! ATGCGAATCCTTTGATTTGT+TGG + chr4_2:36554302-36554321 Msa0598810:intron 35.0%
GTGAGTAACCAACAAATCAA+AGG - chr4_2:36554313-36554332 None:intergenic 35.0%
!!! TTTTGGTTCTTCTGTAGTGA+AGG + chr4_2:36554357-36554376 Msa0598810:intron 35.0%
TGGACTTCGATTCAAATTGA+AGG + chr4_2:36554584-36554603 Msa0598810:CDS 35.0%
GGAACATTGTGTTTGTAACA+TGG + chr4_2:36554664-36554683 Msa0598810:three_prime_UTR 35.0%
TGCAACGGTGACAATATTTA+GGG - chr4_2:36553148-36553167 None:intergenic 35.0%
TTAGAACTTGACAGAAACAG+TGG + chr4_2:36553239-36553258 Msa0598810:CDS 35.0%
AGTGGAAGAGATAGTGAAAT+TGG + chr4_2:36553268-36553287 Msa0598810:CDS 35.0%
GAACTCAAAAAGAAGAACAG+TGG + chr4_2:36553341-36553360 Msa0598810:CDS 35.0%
CAGGTTATGTCATGTATTCT+TGG + chr4_2:36553396-36553415 Msa0598810:CDS 35.0%
AGCATAAAAAAGAGTGGAGT+TGG - chr4_2:36553462-36553481 None:intergenic 35.0%
CTTGACAGCATAAAAAAGAG+TGG - chr4_2:36553468-36553487 None:intergenic 35.0%
! TTTTGTAAGTGTGACTCAGT+TGG + chr4_2:36553659-36553678 Msa0598810:intron 35.0%
!!! GTTGCAAATTTTTTTTGCCC+AGG - chr4_2:36553767-36553786 None:intergenic 35.0%
TGATTTGAGCAAAAGGCTAA+AGG - chr4_2:36553949-36553968 None:intergenic 35.0%
!! ACTCAACTGATTTGAGCAAA+AGG - chr4_2:36553956-36553975 None:intergenic 35.0%
TTGTGTGTGTGAATTTCATG+TGG - chr4_2:36554136-36554155 None:intergenic 35.0%
CATTGTCGATATAGTTAGGT+TGG - chr4_2:36554193-36554212 None:intergenic 35.0%
CTGACATTGTCGATATAGTT+AGG - chr4_2:36554197-36554216 None:intergenic 35.0%
CTATATCGACAATGTCAGTT+AGG + chr4_2:36554199-36554218 Msa0598810:intron 35.0%
!! ATGCGAATCCTTTGATTTGT+TGG + chr4_2:36554302-36554321 Msa0598810:intron 35.0%
GTGAGTAACCAACAAATCAA+AGG - chr4_2:36554313-36554332 None:intergenic 35.0%
!!! TTTTGGTTCTTCTGTAGTGA+AGG + chr4_2:36554357-36554376 Msa0598810:intron 35.0%
TGGACTTCGATTCAAATTGA+AGG + chr4_2:36554584-36554603 Msa0598810:CDS 35.0%
GGAACATTGTGTTTGTAACA+TGG + chr4_2:36554664-36554683 Msa0598810:three_prime_UTR 35.0%
CTGCAACGGTGACAATATTT+AGG - chr4_2:36553149-36553168 None:intergenic 40.0%
CAGAAACAGTGGTAAAGTAG+TGG + chr4_2:36553250-36553269 Msa0598810:CDS 40.0%
CATGACATAACCTGCAAGTT+GGG - chr4_2:36553390-36553409 None:intergenic 40.0%
ACATGACATAACCTGCAAGT+TGG - chr4_2:36553391-36553410 None:intergenic 40.0%
!! CAGTTGGTAAGCTTGGATAT+TGG + chr4_2:36553675-36553694 Msa0598810:intron 40.0%
AAGCTTGGATATTGGTATGC+AGG + chr4_2:36553683-36553702 Msa0598810:intron 40.0%
AGCTTGGATATTGGTATGCA+GGG + chr4_2:36553684-36553703 Msa0598810:intron 40.0%
TGAGCAAAAGGCTAAAGGTA+GGG - chr4_2:36553944-36553963 None:intergenic 40.0%
TTGAGCAAAAGGCTAAAGGT+AGG - chr4_2:36553945-36553964 None:intergenic 40.0%
AATTCACACACACAACTGCA+AGG + chr4_2:36554141-36554160 Msa0598810:intron 40.0%
GCAGAACAAGAAAAGTTTCG+CGG + chr4_2:36554437-36554456 Msa0598810:CDS 40.0%
CTGAATCTGTACAAGAAGCA+TGG + chr4_2:36554496-36554515 Msa0598810:CDS 40.0%
! TGGCTTTCATGTTGACTGTT+TGG + chr4_2:36554516-36554535 Msa0598810:CDS 40.0%
! CATGTTGACTGTTTGGTTGA+AGG + chr4_2:36554523-36554542 Msa0598810:CDS 40.0%
GGAACATTGTGTTTGTGACA+TGG + chr4_2:36554744-36554763 Msa0598810:three_prime_UTR 40.0%
CTGCAACGGTGACAATATTT+AGG - chr4_2:36553149-36553168 None:intergenic 40.0%
CAGAAACAGTGGTAAAGTAG+TGG + chr4_2:36553250-36553269 Msa0598810:CDS 40.0%
CATGACATAACCTGCAAGTT+GGG - chr4_2:36553390-36553409 None:intergenic 40.0%
ACATGACATAACCTGCAAGT+TGG - chr4_2:36553391-36553410 None:intergenic 40.0%
!! CAGTTGGTAAGCTTGGATAT+TGG + chr4_2:36553675-36553694 Msa0598810:intron 40.0%
AAGCTTGGATATTGGTATGC+AGG + chr4_2:36553683-36553702 Msa0598810:intron 40.0%
AGCTTGGATATTGGTATGCA+GGG + chr4_2:36553684-36553703 Msa0598810:intron 40.0%
TGAGCAAAAGGCTAAAGGTA+GGG - chr4_2:36553944-36553963 None:intergenic 40.0%
TTGAGCAAAAGGCTAAAGGT+AGG - chr4_2:36553945-36553964 None:intergenic 40.0%
AATTCACACACACAACTGCA+AGG + chr4_2:36554141-36554160 Msa0598810:intron 40.0%
GCAGAACAAGAAAAGTTTCG+CGG + chr4_2:36554437-36554456 Msa0598810:CDS 40.0%
CTGAATCTGTACAAGAAGCA+TGG + chr4_2:36554496-36554515 Msa0598810:CDS 40.0%
! TGGCTTTCATGTTGACTGTT+TGG + chr4_2:36554516-36554535 Msa0598810:CDS 40.0%
! CATGTTGACTGTTTGGTTGA+AGG + chr4_2:36554523-36554542 Msa0598810:CDS 40.0%
GGAACATTGTGTTTGTGACA+TGG + chr4_2:36554744-36554763 Msa0598810:three_prime_UTR 40.0%
GAAGCGAGTGATTCGTGTTT+GGG - chr4_2:36553308-36553327 None:intergenic 45.0%
!! TGTGACTCAGTTGGTAAGCT+TGG + chr4_2:36553668-36553687 Msa0598810:intron 45.0%
!! AATAATTCTGGCTCTGCCAC+TGG - chr4_2:36553738-36553757 None:intergenic 45.0%
GAGCAAAAGGCTAAAGGTAG+GGG - chr4_2:36553943-36553962 None:intergenic 45.0%
ACACACAACTGCAAGGTCTT+GGG + chr4_2:36554148-36554167 Msa0598810:intron 45.0%
CTTCTGTAGTGAAGGAGCAA+TGG + chr4_2:36554365-36554384 Msa0598810:intron 45.0%
TCTTGTACAGATTCAGCGCA+GGG - chr4_2:36554492-36554511 None:intergenic 45.0%
TTCTTGTACAGATTCAGCGC+AGG - chr4_2:36554493-36554512 None:intergenic 45.0%
GAAGCGAGTGATTCGTGTTT+GGG - chr4_2:36553308-36553327 None:intergenic 45.0%
!! TGTGACTCAGTTGGTAAGCT+TGG + chr4_2:36553668-36553687 Msa0598810:intron 45.0%
!! AATAATTCTGGCTCTGCCAC+TGG - chr4_2:36553738-36553757 None:intergenic 45.0%
GAGCAAAAGGCTAAAGGTAG+GGG - chr4_2:36553943-36553962 None:intergenic 45.0%
ACACACAACTGCAAGGTCTT+GGG + chr4_2:36554148-36554167 Msa0598810:intron 45.0%
CTTCTGTAGTGAAGGAGCAA+TGG + chr4_2:36554365-36554384 Msa0598810:intron 45.0%
TCTTGTACAGATTCAGCGCA+GGG - chr4_2:36554492-36554511 None:intergenic 45.0%
TTCTTGTACAGATTCAGCGC+AGG - chr4_2:36554493-36554512 None:intergenic 45.0%
GGAAGCGAGTGATTCGTGTT+TGG - chr4_2:36553309-36553328 None:intergenic 50.0%
GGTATGCAGGGTTCGAGATT+CGG + chr4_2:36553696-36553715 Msa0598810:intron 50.0%
GTATGCAGGGTTCGAGATTC+GGG + chr4_2:36553697-36553716 Msa0598810:intron 50.0%
TATGCAGGGTTCGAGATTCG+GGG + chr4_2:36553698-36553717 Msa0598810:intron 50.0%
GGTTCGAACCATTTAGCCAG+TGG + chr4_2:36553719-36553738 Msa0598810:intron 50.0%
TAAAGGTAGGGGCGGTTCTA+AGG - chr4_2:36553932-36553951 None:intergenic 50.0%
CAAAAGGCTAAAGGTAGGGG+CGG - chr4_2:36553940-36553959 None:intergenic 50.0%
CACACACAACTGCAAGGTCT+TGG + chr4_2:36554147-36554166 Msa0598810:intron 50.0%
CTGTAGTGAAGGAGCAATGG+AGG + chr4_2:36554368-36554387 Msa0598810:intron 50.0%
TAGTGAAGGAGCAATGGAGG+AGG + chr4_2:36554371-36554390 Msa0598810:intron 50.0%
TGGAGAGGTTCTACTGGAAG+CGG + chr4_2:36554402-36554421 Msa0598810:CDS 50.0%
CTTGTACAGATTCAGCGCAG+GGG - chr4_2:36554491-36554510 None:intergenic 50.0%
GGAAGCGAGTGATTCGTGTT+TGG - chr4_2:36553309-36553328 None:intergenic 50.0%
GGTATGCAGGGTTCGAGATT+CGG + chr4_2:36553696-36553715 Msa0598810:intron 50.0%
GTATGCAGGGTTCGAGATTC+GGG + chr4_2:36553697-36553716 Msa0598810:intron 50.0%
TATGCAGGGTTCGAGATTCG+GGG + chr4_2:36553698-36553717 Msa0598810:intron 50.0%
GGTTCGAACCATTTAGCCAG+TGG + chr4_2:36553719-36553738 Msa0598810:intron 50.0%
TAAAGGTAGGGGCGGTTCTA+AGG - chr4_2:36553932-36553951 None:intergenic 50.0%
CAAAAGGCTAAAGGTAGGGG+CGG - chr4_2:36553940-36553959 None:intergenic 50.0%
CACACACAACTGCAAGGTCT+TGG + chr4_2:36554147-36554166 Msa0598810:intron 50.0%
CTGTAGTGAAGGAGCAATGG+AGG + chr4_2:36554368-36554387 Msa0598810:intron 50.0%
TAGTGAAGGAGCAATGGAGG+AGG + chr4_2:36554371-36554390 Msa0598810:intron 50.0%
TGGAGAGGTTCTACTGGAAG+CGG + chr4_2:36554402-36554421 Msa0598810:CDS 50.0%
CTTGTACAGATTCAGCGCAG+GGG - chr4_2:36554491-36554510 None:intergenic 50.0%
CACGTTGATGCCCAACTTGC+AGG + chr4_2:36553377-36553396 Msa0598810:CDS 55.0%
GCTTCTATCACCAAGCTCGC+AGG + chr4_2:36553434-36553453 Msa0598810:CDS 55.0%
! TGGCTCTGCCACTGGCTAAA+TGG - chr4_2:36553730-36553749 None:intergenic 55.0%
AAAACATTCAGCCGGAGCCC+AGG + chr4_2:36553904-36553923 Msa0598810:intron 55.0%
AAACATTCAGCCGGAGCCCA+GGG + chr4_2:36553905-36553924 Msa0598810:intron 55.0%
AAGGAGCAATGGAGGAGGCA+AGG + chr4_2:36554376-36554395 Msa0598810:CDS 55.0%
AGGAGCAATGGAGGAGGCAA+GGG + chr4_2:36554377-36554396 Msa0598810:CDS 55.0%
AGGGCATGGAGAGGTTCTAC+TGG + chr4_2:36554396-36554415 Msa0598810:CDS 55.0%
TGCTTCACGTCGATCCGTTG+AGG + chr4_2:36554464-36554483 Msa0598810:CDS 55.0%
CACGTTGATGCCCAACTTGC+AGG + chr4_2:36553377-36553396 Msa0598810:CDS 55.0%
GCTTCTATCACCAAGCTCGC+AGG + chr4_2:36553434-36553453 Msa0598810:CDS 55.0%
! TGGCTCTGCCACTGGCTAAA+TGG - chr4_2:36553730-36553749 None:intergenic 55.0%
AAAACATTCAGCCGGAGCCC+AGG + chr4_2:36553904-36553923 Msa0598810:intron 55.0%
AAACATTCAGCCGGAGCCCA+GGG + chr4_2:36553905-36553924 Msa0598810:intron 55.0%
AAGGAGCAATGGAGGAGGCA+AGG + chr4_2:36554376-36554395 Msa0598810:CDS 55.0%
AGGAGCAATGGAGGAGGCAA+GGG + chr4_2:36554377-36554396 Msa0598810:CDS 55.0%
AGGGCATGGAGAGGTTCTAC+TGG + chr4_2:36554396-36554415 Msa0598810:CDS 55.0%
TGCTTCACGTCGATCCGTTG+AGG + chr4_2:36554464-36554483 Msa0598810:CDS 55.0%
TCACGCTCACGCACGAGTGA+TGG + chr4_2:36553202-36553221 Msa0598810:exon 60.0%
CGCACGAGTGATGGCAACTG+TGG + chr4_2:36553211-36553230 Msa0598810:exon 60.0%
GGAGTTGGAACCTGCGAGCT+TGG - chr4_2:36553447-36553466 None:intergenic 60.0%
AACATTCAGCCGGAGCCCAG+GGG + chr4_2:36553906-36553925 Msa0598810:intron 60.0%
CAATGGAGGAGGCAAGGGCA+TGG + chr4_2:36554382-36554401 Msa0598810:CDS 60.0%
TTCAGCGCAGGGGTCCTCAA+CGG - chr4_2:36554481-36554500 None:intergenic 60.0%
TCACGCTCACGCACGAGTGA+TGG + chr4_2:36553202-36553221 Msa0598810:exon 60.0%
CGCACGAGTGATGGCAACTG+TGG + chr4_2:36553211-36553230 Msa0598810:exon 60.0%
GGAGTTGGAACCTGCGAGCT+TGG - chr4_2:36553447-36553466 None:intergenic 60.0%
AACATTCAGCCGGAGCCCAG+GGG + chr4_2:36553906-36553925 Msa0598810:intron 60.0%
CAATGGAGGAGGCAAGGGCA+TGG + chr4_2:36554382-36554401 Msa0598810:CDS 60.0%
TTCAGCGCAGGGGTCCTCAA+CGG - chr4_2:36554481-36554500 None:intergenic 60.0%
!! GTTCTAAGGCCCCTGGGCTC+CGG - chr4_2:36553918-36553937 None:intergenic 65.0%
! GAGGAGGCAAGGGCATGGAG+AGG + chr4_2:36554387-36554406 Msa0598810:CDS 65.0%
!! GTTCTAAGGCCCCTGGGCTC+CGG - chr4_2:36553918-36553937 None:intergenic 65.0%
! GAGGAGGCAAGGGCATGGAG+AGG + chr4_2:36554387-36554406 Msa0598810:CDS 65.0%
!! GGGGCGGTTCTAAGGCCCCT+GGG - chr4_2:36553924-36553943 None:intergenic 70.0%
!! AGGGGCGGTTCTAAGGCCCC+TGG - chr4_2:36553925-36553944 None:intergenic 70.0%
!! GGGGCGGTTCTAAGGCCCCT+GGG - chr4_2:36553924-36553943 None:intergenic 70.0%
!! AGGGGCGGTTCTAAGGCCCC+TGG - chr4_2:36553925-36553944 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 36553085 36554787 36553085 ID=Msa0598810;Name=Msa0598810
chr4_2 mRNA 36553085 36554787 36553085 ID=Msa0598810-mRNA-1;Parent=Msa0598810;Name=Msa0598810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=136|1|1|1|1|1|2|184|154
chr4_2 exon 36553085 36553455 36553085 ID=Msa0598810-mRNA-1:exon:8271;Parent=Msa0598810-mRNA-1
chr4_2 exon 36554374 36554787 36554374 ID=Msa0598810-mRNA-1:exon:8272;Parent=Msa0598810-mRNA-1
chr4_2 five_prime_UTR 36553085 36553220 36553085 ID=Msa0598810-mRNA-1:five_prime_utr;Parent=Msa0598810-mRNA-1
chr4_2 CDS 36553221 36553455 36553221 ID=Msa0598810-mRNA-1:cds;Parent=Msa0598810-mRNA-1
chr4_2 CDS 36554374 36554603 36554374 ID=Msa0598810-mRNA-1:cds;Parent=Msa0598810-mRNA-1
chr4_2 three_prime_UTR 36554604 36554787 36554604 ID=Msa0598810-mRNA-1:three_prime_utr;Parent=Msa0598810-mRNA-1
Gene Sequence

>Msa0598810

ATGGCAACTGTGGAGATTTTAGAACTTGACAGAAACAGTGGTAAAGTAGTGGAAGAGATAGTGAAATTGGAGAGAAAGATATTTCCCAAACACGAATCACTCGCTTCCTTCTTTGAAAATGAACTCAAAAAGAAGAACAGTGGATTGCTTTATCTTCACGTTGATGCCCAACTTGCAGGTTATGTCATGTATTCTTGGCCTTCTTCATTGTATGCTTCTATCACCAAGCTCGCAGTGAAGGAGCAATGGAGGAGGCAAGGGCATGGAGAGGTTCTACTGGAAGCGGCAATCGAGAAATGCAGAACAAGAAAAGTTTCGCGGATAATGCTTCACGTCGATCCGTTGAGGACCCCTGCGCTGAATCTGTACAAGAAGCATGGCTTTCATGTTGACTGTTTGGTTGAAGGCTATTACTCTTCTGATAGAAATGCTTATAGAATGTACTTGGACTTCGATTCAAATTGA

Protein sequence

>Msa0598810

MATVEILELDRNSGKVVEEIVKLERKIFPKHESLASFFENELKKKNSGLLYLHVDAQLAGYVMYSWPSSLYASITKLAVKEQWRRQGHGEVLLEAAIEKCRTRKVSRIMLHVDPLRTPALNLYKKHGFHVDCLVEGYYSSDRNAYRMYLDFDSN*