Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780250 | A0A2K3P7W4 | 47.876 | 612 | 193 | 15 | 1 | 599 | 1 | 499 | 4.44e-134 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0780250 | 0.847394 | 1.189270e-59 | -8.615850e-47 |
| Msa0016670 | Msa0780250 | 0.821765 | 3.393222e-53 | -8.615850e-47 |
| Msa0017510 | Msa0780250 | 0.817898 | 2.596323e-52 | -8.615850e-47 |
| Msa0027230 | Msa0780250 | 0.804194 | 2.427982e-49 | -8.615850e-47 |
| Msa0040240 | Msa0780250 | 0.839262 | 1.760369e-57 | -8.615850e-47 |
| Msa0047070 | Msa0780250 | 0.804263 | 2.349338e-49 | -8.615850e-47 |
| Msa0072370 | Msa0780250 | 0.806136 | 9.522043e-50 | -8.615850e-47 |
| Msa0075220 | Msa0780250 | 0.809151 | 2.180590e-50 | -8.615850e-47 |
| Msa0078650 | Msa0780250 | 0.811483 | 6.845635e-51 | -8.615850e-47 |
| Msa0081520 | Msa0780250 | 0.801625 | 8.244700e-49 | -8.615850e-47 |
| Msa0087940 | Msa0780250 | 0.800187 | 1.621283e-48 | -8.615850e-47 |
| Msa0094120 | Msa0780250 | 0.806853 | 6.721483e-50 | -8.615850e-47 |
| Msa0094850 | Msa0780250 | 0.801779 | 7.666286e-49 | -8.615850e-47 |
| Msa0097810 | Msa0780250 | 0.805856 | 1.090747e-49 | -8.615850e-47 |
| Msa0110970 | Msa0780250 | 0.844010 | 9.848485e-59 | -8.615850e-47 |
| Msa0115160 | Msa0780250 | 0.811058 | 8.463413e-51 | -8.615850e-47 |
| Msa0118570 | Msa0780250 | 0.818139 | 2.290176e-52 | -8.615850e-47 |
| Msa0620240 | Msa0780250 | 0.819843 | 9.385093e-53 | -8.615850e-47 |
| Msa0620990 | Msa0780250 | 0.809336 | 1.989784e-50 | -8.615850e-47 |
| Msa0626450 | Msa0780250 | 0.804322 | 2.283791e-49 | -8.615850e-47 |
| Msa0626490 | Msa0780250 | 0.807631 | 4.599080e-50 | -8.615850e-47 |
| Msa0627450 | Msa0780250 | 0.813937 | 1.988026e-51 | -8.615850e-47 |
| Msa0650020 | Msa0780250 | 0.817772 | 2.773094e-52 | -8.615850e-47 |
| Msa0664600 | Msa0780250 | 0.805416 | 1.348858e-49 | -8.615850e-47 |
| Msa0669320 | Msa0780250 | 0.803766 | 2.979839e-49 | -8.615850e-47 |
| Msa0682330 | Msa0780250 | 0.809333 | 1.993053e-50 | -8.615850e-47 |
| Msa0683510 | Msa0780250 | 0.824857 | 6.430334e-54 | -8.615850e-47 |
| Msa0683570 | Msa0780250 | 0.813377 | 2.639818e-51 | -8.615850e-47 |
| Msa0702340 | Msa0780250 | 0.808979 | 2.373652e-50 | -8.615850e-47 |
| Msa0702590 | Msa0780250 | 0.812071 | 5.098949e-51 | -8.615850e-47 |
| Msa0702660 | Msa0780250 | 0.808055 | 3.737021e-50 | -8.615850e-47 |
| Msa0724910 | Msa0780250 | 0.806809 | 6.869869e-50 | -8.615850e-47 |
| Msa0741240 | Msa0780250 | 0.840704 | 7.406308e-58 | -8.615850e-47 |
| Msa0749760 | Msa0780250 | 0.810662 | 1.031008e-50 | -8.615850e-47 |
| Msa0754520 | Msa0780250 | 0.803292 | 3.738164e-49 | -8.615850e-47 |
| Msa0770720 | Msa0780250 | 0.806449 | 8.180043e-50 | -8.615850e-47 |
| Msa0780250 | Msa0821760 | 0.874596 | 5.969559e-68 | -8.615850e-47 |
| Msa0780250 | Msa0823820 | 0.809193 | 2.135438e-50 | -8.615850e-47 |
| Msa0780250 | Msa0824660 | 0.810125 | 1.346360e-50 | -8.615850e-47 |
| Msa0780250 | Msa0826130 | 0.814572 | 1.438685e-51 | -8.615850e-47 |
| Msa0780250 | Msa0828560 | 0.821202 | 4.577612e-53 | -8.615850e-47 |
| Msa0780250 | Msa0833220 | 0.803605 | 3.218834e-49 | -8.615850e-47 |
| Msa0780250 | Msa0856050 | 0.805698 | 1.177386e-49 | -8.615850e-47 |
| Msa0780250 | Msa0861510 | 0.828446 | 8.950430e-55 | -8.615850e-47 |
| Msa0780250 | Msa0861530 | 0.809278 | 2.047764e-50 | -8.615850e-47 |
| Msa0780250 | Msa0861600 | 0.823804 | 1.136977e-53 | -8.615850e-47 |
| Msa0780250 | Msa0861870 | 0.821435 | 4.043596e-53 | -8.615850e-47 |
| Msa0780250 | Msa0863010 | 0.814038 | 1.888119e-51 | -8.615850e-47 |
| Msa0780250 | Msa0866520 | 0.805580 | 1.246305e-49 | -8.615850e-47 |
| Msa0780250 | Msa0880140 | 0.816703 | 4.824126e-52 | -8.615850e-47 |
| Msa0780250 | Msa0880440 | 0.816090 | 6.614140e-52 | -8.615850e-47 |
| Msa0780250 | Msa0906130 | 0.802557 | 5.302155e-49 | -8.615850e-47 |
| Msa0780250 | Msa0930780 | 0.824411 | 8.190519e-54 | -8.615850e-47 |
| Msa0780250 | Msa0936410 | 0.802550 | 5.320551e-49 | -8.615850e-47 |
| Msa0780250 | Msa0945110 | 0.806458 | 8.145690e-50 | -8.615850e-47 |
| Msa0780250 | Msa0961690 | 0.810727 | 9.980372e-51 | -8.615850e-47 |
| Msa0780250 | Msa1004600 | 0.802007 | 6.879929e-49 | -8.615850e-47 |
| Msa0780250 | Msa1020670 | 0.802577 | 5.251821e-49 | -8.615850e-47 |
| Msa0780250 | Msa1041670 | 0.802550 | 5.319664e-49 | -8.615850e-47 |
| Msa0780250 | Msa1047980 | 0.801461 | 8.907540e-49 | -8.615850e-47 |
| Msa0780250 | Msa1050910 | 0.802166 | 6.381203e-49 | -8.615850e-47 |
| Msa0780250 | Msa1051830 | 0.824053 | 9.938628e-54 | -8.615850e-47 |
| Msa0780250 | Msa1059960 | 0.810342 | 1.209213e-50 | -8.615850e-47 |
| Msa0780250 | Msa1063950 | 0.807389 | 5.177751e-50 | -8.615850e-47 |
| Msa0780250 | Msa1085200 | 0.813750 | 2.184962e-51 | -8.615850e-47 |
| Msa0780250 | Msa1105160 | 0.807019 | 6.201783e-50 | -8.615850e-47 |
| Msa0780250 | Msa1108160 | 0.806443 | 8.205066e-50 | -8.615850e-47 |
| Msa0780250 | Msa1111130 | 0.800806 | 1.212325e-48 | -8.615850e-47 |
| Msa0780250 | Msa1123380 | 0.810474 | 1.132134e-50 | -8.615850e-47 |
| Msa0780250 | Msa1124110 | 0.811657 | 6.274463e-51 | -8.615850e-47 |
| Msa0780250 | Msa1125940 | 0.805931 | 1.051583e-49 | -8.615850e-47 |
| Msa0780250 | Msa1133000 | 0.818137 | 2.292997e-52 | -8.615850e-47 |
| Msa0780250 | Msa1139810 | 0.802979 | 4.337950e-49 | -8.615850e-47 |
| Msa0780250 | Msa1147900 | 0.800908 | 1.155889e-48 | -8.615850e-47 |
| Msa0780250 | Msa1151910 | 0.819217 | 1.304019e-52 | -8.615850e-47 |
| Msa0780250 | Msa1157870 | 0.806522 | 7.896940e-50 | -8.615850e-47 |
| Msa0780250 | Msa1166560 | 0.800976 | 1.119505e-48 | -8.615850e-47 |
| Msa0780250 | Msa1189070 | 0.808281 | 3.345048e-50 | -8.615850e-47 |
| Msa0780250 | Msa1199570 | 0.816887 | 4.386940e-52 | -8.615850e-47 |
| Msa0780250 | Msa1203710 | 0.801592 | 8.372177e-49 | -8.615850e-47 |
| Msa0780250 | Msa1209460 | 0.818885 | 1.551865e-52 | -8.615850e-47 |
| Msa0780250 | Msa1221060 | 0.807106 | 5.943061e-50 | -8.615850e-47 |
| Msa0780250 | Msa1224840 | 0.811222 | 7.798645e-51 | -8.615850e-47 |
| Msa0780250 | Msa1252190 | 0.818630 | 1.773231e-52 | -8.615850e-47 |
| Msa0780250 | Msa1272900 | 0.824684 | 7.063291e-54 | -8.615850e-47 |
| Msa0780250 | Msa1276660 | 0.831732 | 1.412982e-55 | -8.615850e-47 |
| Msa0780250 | Msa1292830 | 0.815858 | 7.450995e-52 | -8.615850e-47 |
| Msa0780250 | Msa1303240 | 0.807664 | 4.526306e-50 | -8.615850e-47 |
| Msa0780250 | Msa1303250 | 0.826148 | 3.179460e-54 | -8.615850e-47 |
| Msa0780250 | Msa1328710 | 0.819139 | 1.358925e-52 | -8.615850e-47 |
| Msa0780250 | Msa1361410 | 0.804183 | 2.441234e-49 | -8.615850e-47 |
| Msa0780250 | Msa1374040 | 0.847779 | 9.319863e-60 | -8.615850e-47 |
| Msa0780250 | Msa1374550 | 0.815382 | 9.515950e-52 | -8.615850e-47 |
| Msa0780250 | Msa1382540 | 0.800201 | 1.610883e-48 | -8.615850e-47 |
| Msa0780250 | Msa1422580 | 0.812170 | 4.852054e-51 | -8.615850e-47 |
| Msa0780250 | Msa1423350 | 0.825301 | 5.050101e-54 | -8.615850e-47 |
| Msa0780250 | Msa1446810 | 0.809680 | 1.678548e-50 | -8.615850e-47 |
| Msa0780250 | Msa1459380 | 0.811203 | 7.875052e-51 | -8.615850e-47 |
| Msa0126370 | Msa0780250 | 0.802222 | 6.216262e-49 | -8.615850e-47 |
| Msa0134610 | Msa0780250 | 0.805996 | 1.019339e-49 | -8.615850e-47 |
| Msa0146260 | Msa0780250 | 0.841007 | 6.167288e-58 | -8.615850e-47 |
| Msa0157290 | Msa0780250 | 0.817971 | 2.499514e-52 | -8.615850e-47 |
| Msa0168500 | Msa0780250 | 0.804057 | 2.593139e-49 | -8.615850e-47 |
| Msa0171290 | Msa0780250 | 0.803943 | 2.738663e-49 | -8.615850e-47 |
| Msa0173890 | Msa0780250 | 0.809641 | 1.711709e-50 | -8.615850e-47 |
| Msa0195630 | Msa0780250 | 0.808211 | 3.462350e-50 | -8.615850e-47 |
| Msa0197420 | Msa0780250 | 0.815675 | 8.188091e-52 | -8.615850e-47 |
| Msa0200260 | Msa0780250 | 0.803375 | 3.591558e-49 | -8.615850e-47 |
| Msa0225740 | Msa0780250 | 0.807939 | 3.956482e-50 | -8.615850e-47 |
| Msa0237410 | Msa0780250 | 0.802341 | 5.875313e-49 | -8.615850e-47 |
| Msa0369850 | Msa0780250 | 0.802003 | 6.893920e-49 | -8.615850e-47 |
| Msa0376350 | Msa0780250 | 0.805227 | 1.478250e-49 | -8.615850e-47 |
| Msa0378720 | Msa0780250 | 0.815693 | 8.112478e-52 | -8.615850e-47 |
| Msa0392510 | Msa0780250 | 0.823267 | 1.518211e-53 | -8.615850e-47 |
| Msa0410500 | Msa0780250 | 0.834711 | 2.558701e-56 | -8.615850e-47 |
| Msa0410650 | Msa0780250 | 0.822671 | 2.090469e-53 | -8.615850e-47 |
| Msa0417270 | Msa0780250 | 0.821480 | 3.947987e-53 | -8.615850e-47 |
| Msa0417880 | Msa0780250 | 0.835298 | 1.820479e-56 | -8.615850e-47 |
| Msa0422850 | Msa0780250 | 0.810724 | 9.997793e-51 | -8.615850e-47 |
| Msa0422930 | Msa0780250 | 0.810295 | 1.237667e-50 | -8.615850e-47 |
| Msa0423900 | Msa0780250 | 0.810965 | 8.864136e-51 | -8.615850e-47 |
| Msa0430260 | Msa0780250 | 0.803318 | 3.691387e-49 | -8.615850e-47 |
| Msa0467430 | Msa0780250 | 0.811076 | 8.390677e-51 | -8.615850e-47 |
| Msa0475790 | Msa0780250 | 0.844587 | 6.893928e-59 | -8.615850e-47 |
| Msa0479170 | Msa0780250 | 0.800347 | 1.504134e-48 | -8.615850e-47 |
| Msa0255090 | Msa0780250 | 0.822015 | 2.970085e-53 | -8.615850e-47 |
| Msa0259380 | Msa0780250 | 0.821905 | 3.148092e-53 | -8.615850e-47 |
| Msa0263080 | Msa0780250 | 0.800729 | 1.257051e-48 | -8.615850e-47 |
| Msa0277180 | Msa0780250 | 0.823829 | 1.121739e-53 | -8.615850e-47 |
| Msa0284410 | Msa0780250 | 0.805835 | 1.101982e-49 | -8.615850e-47 |
| Msa0287650 | Msa0780250 | 0.820726 | 5.888900e-53 | -8.615850e-47 |
| Msa0292400 | Msa0780250 | 0.820271 | 7.491001e-53 | -8.615850e-47 |
| Msa0294160 | Msa0780250 | 0.817336 | 3.476603e-52 | -8.615850e-47 |
| Msa0300690 | Msa0780250 | 0.822958 | 1.792890e-53 | -8.615850e-47 |
| Msa0316810 | Msa0780250 | 0.818048 | 2.401339e-52 | -8.615850e-47 |
| Msa0318700 | Msa0780250 | 0.802539 | 5.347655e-49 | -8.615850e-47 |
| Msa0363070 | Msa0780250 | 0.810246 | 1.268238e-50 | -8.615850e-47 |
| Msa0363200 | Msa0780250 | 0.808708 | 2.712497e-50 | -8.615850e-47 |
| Msa0498060 | Msa0780250 | 0.818500 | 1.897615e-52 | -8.615850e-47 |
| Msa0507680 | Msa0780250 | 0.822520 | 2.267138e-53 | -8.615850e-47 |
| Msa0532070 | Msa0780250 | 0.819472 | 1.140764e-52 | -8.615850e-47 |
| Msa0546680 | Msa0780250 | 0.811278 | 7.582648e-51 | -8.615850e-47 |
| Msa0547720 | Msa0780250 | 0.803672 | 3.118135e-49 | -8.615850e-47 |
| Msa0569200 | Msa0780250 | 0.810251 | 1.264771e-50 | -8.615850e-47 |
| Msa0574890 | Msa0780250 | 0.830659 | 2.592722e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780250 | MtrunA17_Chr5g0445861 | 49.133 | 519 | 153 | 10 | 1 | 504 | 1 | 423 | 9.77e-118 | 356 |
| Msa0780250 | MtrunA17_Chr5g0445961 | 43.191 | 470 | 182 | 10 | 4 | 456 | 4 | 405 | 7.33e-90 | 288 |
| Msa0780250 | MtrunA17_Chr5g0445881 | 44.282 | 341 | 154 | 4 | 289 | 598 | 133 | 468 | 3.36e-57 | 199 |
| Msa0780250 | MtrunA17_Chr5g0445881 | 38.723 | 235 | 86 | 7 | 1 | 211 | 1 | 201 | 4.27e-23 | 102 |
| Msa0780250 | MtrunA17_Chr5g0445831 | 37.753 | 445 | 170 | 12 | 1 | 431 | 1 | 352 | 7.65e-51 | 181 |
| Msa0780250 | MtrunA17_Chr5g0445771 | 38.298 | 423 | 153 | 10 | 253 | 599 | 114 | 504 | 1.41e-45 | 168 |
| Msa0780250 | MtrunA17_Chr5g0445771 | 41.844 | 282 | 96 | 6 | 3 | 271 | 1 | 227 | 4.30e-36 | 141 |
| Msa0780250 | MtrunA17_Chr5g0445811 | 51.190 | 168 | 77 | 1 | 264 | 431 | 79 | 241 | 1.96e-36 | 137 |
| Msa0780250 | MtrunA17_Chr5g0445811 | 31.136 | 273 | 81 | 8 | 1 | 267 | 1 | 172 | 8.81e-13 | 69.3 |
| Msa0780250 | MtrunA17_Chr5g0445871 | 42.788 | 208 | 88 | 5 | 416 | 598 | 4 | 205 | 3.37e-25 | 103 |
| Msa0780250 | MtrunA17_Chr5g0446171 | 37.273 | 220 | 76 | 6 | 4 | 191 | 4 | 193 | 1.11e-24 | 103 |
| Msa0780250 | MtrunA17_Chr5g0446181 | 41.262 | 206 | 95 | 6 | 1 | 198 | 1 | 188 | 1.53e-23 | 102 |
| Msa0780250 | MtrunA17_Chr5g0446181 | 36.237 | 287 | 103 | 13 | 348 | 599 | 130 | 371 | 4.38e-21 | 95.5 |
| Msa0780250 | MtrunA17_Chr5g0434161 | 64.179 | 67 | 24 | 0 | 254 | 320 | 18 | 84 | 1.00e-18 | 81.6 |
| Msa0780250 | MtrunA17_Chr5g0434161 | 51.220 | 82 | 37 | 1 | 226 | 304 | 18 | 99 | 1.92e-13 | 66.6 |
| Msa0780250 | MtrunA17_Chr5g0434161 | 58.182 | 55 | 23 | 0 | 200 | 254 | 20 | 74 | 7.28e-11 | 59.3 |
| Msa0780250 | MtrunA17_Chr5g0434161 | 50.685 | 73 | 33 | 1 | 282 | 354 | 18 | 87 | 7.72e-11 | 59.3 |
| Msa0780250 | MtrunA17_Chr1g0185261 | 40.881 | 159 | 53 | 4 | 323 | 477 | 71 | 192 | 1.37e-17 | 82.0 |
| Msa0780250 | MtrunA17_Chr5g0446231 | 44.167 | 120 | 54 | 3 | 36 | 154 | 2 | 109 | 2.83e-16 | 82.0 |
| Msa0780250 | MtrunA17_Chr5g0446191 | 45.299 | 117 | 51 | 3 | 39 | 154 | 20 | 124 | 3.53e-15 | 78.6 |
| Msa0780250 | MtrunA17_Chr5g0445821 | 59.140 | 93 | 33 | 3 | 508 | 599 | 19 | 107 | 4.20e-15 | 71.6 |
| Msa0780250 | MtrunA17_Chr5g0445801 | 54.737 | 95 | 38 | 2 | 505 | 599 | 21 | 110 | 1.13e-11 | 62.0 |
| Msa0780250 | MtrunA17_Chr5g0413371 | 40.336 | 119 | 51 | 3 | 31 | 149 | 2 | 100 | 3.04e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 107 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGACCCAGGTTCGATTT+TGG | 0.197878 | 5_2:+61954440 | None:intergenic |
| CATGAAAAGAAGGCCATTTC+TGG | 0.199522 | 5_2:-61951372 | Msa0780250:CDS |
| GAATTAGAGTTGGAAGTTTC+GGG | 0.232160 | 5_2:-61953469 | Msa0780250:CDS |
| GGAGAAACTTGCTAGGTTAC+AGG | 0.287685 | 5_2:-61954181 | Msa0780250:CDS |
| CGGTGTGTGGAAGATGAAAA+TGG | 0.304803 | 5_2:+61954578 | None:intergenic |
| TGAATTAGAGTTGGAAGTTT+CGG | 0.309252 | 5_2:-61953470 | Msa0780250:CDS |
| GGAAACGTTGAACAACAATT+TGG | 0.315230 | 5_2:-61953317 | Msa0780250:CDS |
| TGAGTTAGAATCTGAGGTTT+TGG | 0.346512 | 5_2:-61953563 | Msa0780250:CDS |
| GTTTCAAGAGGAGCTTGAAT+TGG | 0.356825 | 5_2:-61954202 | Msa0780250:CDS |
| TGAACTAGAGCATCAAGTTT+TGG | 0.357575 | 5_2:-61953731 | Msa0780250:CDS |
| CGAGCCTCCTGCTGATACTA+TGG | 0.369008 | 5_2:-61953113 | Msa0780250:CDS |
| TGAGTTAGAGCTTCAAGTTT+TGG | 0.375044 | 5_2:-61953815 | Msa0780250:CDS |
| TGACAATGTTGAACGTGTTT+TGG | 0.375700 | 5_2:-61954295 | Msa0780250:CDS |
| AGTAACACTTCAACGAGATC+TGG | 0.378949 | 5_2:+61954342 | None:intergenic |
| GTCTCGATAATCTTACTATA+AGG | 0.383145 | 5_2:-61951182 | Msa0780250:CDS |
| TGAGGAAGTTGAAGGATAAG+TGG | 0.396275 | 5_2:-61953537 | Msa0780250:CDS |
| CTTCATGGCAATTCCAGAAA+TGG | 0.400165 | 5_2:+61951359 | None:intergenic |
| TTTACAGCACAATGTTGAAA+TGG | 0.412766 | 5_2:-61954235 | Msa0780250:CDS |
| GGAGAATGATAAAACTGCTT+TGG | 0.414411 | 5_2:-61953371 | Msa0780250:CDS |
| ATGATCATGATCATTCTTCA+TGG | 0.416992 | 5_2:+61951344 | None:intergenic |
| TCGAAGCAAGGTTCGAGTAT+TGG | 0.418664 | 5_2:-61953392 | Msa0780250:CDS |
| TTGAAGAAAGTGAAAGTAGC+TGG | 0.420289 | 5_2:-61954084 | Msa0780250:CDS |
| AAAGAGGAACATTGAGTTGA+GGG | 0.429427 | 5_2:-61954025 | Msa0780250:CDS |
| GAGTCTTTAAACACAAAGTT+CGG | 0.431070 | 5_2:-61953223 | Msa0780250:CDS |
| TTTGGAGTTGAGGAAGTTGA+AGG | 0.434593 | 5_2:-61953545 | Msa0780250:CDS |
| AATAGCCAAGTTTGAAAATG+AGG | 0.436374 | 5_2:-61951289 | Msa0780250:CDS |
| GATTGAAAATGTCAAATTGA+AGG | 0.436713 | 5_2:-61953338 | Msa0780250:CDS |
| TTAGCTGATAGAGACACTAT+TGG | 0.438282 | 5_2:-61953931 | Msa0780250:CDS |
| TGGGTTGAATGATCATGATA+AGG | 0.441407 | 5_2:+61954460 | None:intergenic |
| TGAAGAAGTTGAAGGGGAAG+TGG | 0.443788 | 5_2:-61953444 | Msa0780250:CDS |
| GTCCTCAGGTGCAAAACAAC+GGG | 0.448627 | 5_2:-61953009 | Msa0780250:CDS |
| AATGATAAAACTGCTTTGGC+TGG | 0.449815 | 5_2:-61953367 | Msa0780250:CDS |
| AAAATGGGTTGATGCTGTTA+AGG | 0.456479 | 5_2:+61954545 | None:intergenic |
| TTCTGTAGAGAAAGATAAAG+AGG | 0.476033 | 5_2:-61953083 | Msa0780250:CDS |
| TCATCTCTAACAAGAATCAC+AGG | 0.478957 | 5_2:+61954405 | None:intergenic |
| CTTCCTTCGACTTCTTAACT+TGG | 0.479496 | 5_2:+61953875 | None:intergenic |
| GAAGCTAAAGGTGCACCATC+AGG | 0.484062 | 5_2:-61952962 | Msa0780250:intron |
| TGTGCTGTAAATGTAGAATC+TGG | 0.488371 | 5_2:+61954247 | None:intergenic |
| CAAGCTAGCTGCCAGTCCTC+AGG | 0.495740 | 5_2:-61953023 | Msa0780250:CDS |
| AACAAGAATCACAGGGTTGG+TGG | 0.496938 | 5_2:+61954413 | None:intergenic |
| ATCAGCTAAACTAGTTATCT+CGG | 0.497069 | 5_2:+61953945 | None:intergenic |
| GAAGAAGTTGAAGGGGAAGT+GGG | 0.503194 | 5_2:-61953443 | Msa0780250:CDS |
| TCGGGATTGAAGAAGTTGAA+GGG | 0.511191 | 5_2:-61953451 | Msa0780250:CDS |
| GCCAAGTTTGAAAATGAGGT+TGG | 0.511460 | 5_2:-61951285 | Msa0780250:CDS |
| TCTTTGCTTAAAATCTTCCT+CGG | 0.513634 | 5_2:+61954158 | None:intergenic |
| TTCGGGATTGAAGAAGTTGA+AGG | 0.514395 | 5_2:-61953452 | Msa0780250:CDS |
| CTGTTGATGTTCTGAGAAAG+AGG | 0.517153 | 5_2:-61954041 | Msa0780250:CDS |
| AGACGAGAAGCTCAAGGTTG+AGG | 0.521486 | 5_2:-61953254 | Msa0780250:CDS |
| GCATGAAAGAGTTGCAAGGT+TGG | 0.521848 | 5_2:-61953194 | Msa0780250:CDS |
| ACTTGCTAGGTTACAGGCCG+AGG | 0.523236 | 5_2:-61954175 | Msa0780250:CDS |
| AACGAATGGTGAATTAGAGT+TGG | 0.523751 | 5_2:-61953479 | Msa0780250:CDS |
| AGAGGACGAAGAAGAAGAAG+TGG | 0.525469 | 5_2:+61951221 | None:intergenic |
| AAAGTGAAAGTAGCTGGGTT+AGG | 0.525794 | 5_2:-61954078 | Msa0780250:CDS |
| ATTCAACCCAAAATCGAACC+TGG | 0.527062 | 5_2:-61954447 | Msa0780250:CDS |
| GAATTATGAGTTAGAATCTG+AGG | 0.528199 | 5_2:-61953569 | Msa0780250:CDS |
| TGTTGATGTGCTTCGAAGCA+AGG | 0.528265 | 5_2:-61953404 | Msa0780250:CDS |
| GGACGAAGAAGAAGAAGTGG+AGG | 0.530441 | 5_2:+61951224 | None:intergenic |
| GTTAAGAAGTCGAAGGAAGA+TGG | 0.531772 | 5_2:-61953871 | Msa0780250:CDS |
| TTAATGAGTGTAGATACCTC+TGG | 0.537571 | 5_2:-61953154 | Msa0780250:CDS |
| ACACACACTGATCAACATCT+TGG | 0.542653 | 5_2:+61951406 | None:intergenic |
| ATCTACACTCATTAAAACTT+CGG | 0.544129 | 5_2:+61953162 | None:intergenic |
| TTGAATTGGAGAAACTTGCT+AGG | 0.544441 | 5_2:-61954188 | Msa0780250:CDS |
| AAGTTGTGAAGCTCGGTTGA+AGG | 0.545324 | 5_2:-61953971 | Msa0780250:CDS |
| AGTGTCCTGAAGCTGAAAGA+AGG | 0.546843 | 5_2:+61954621 | None:intergenic |
| GCTGGGTTAGGTGCTGATAG+TGG | 0.547907 | 5_2:-61954066 | Msa0780250:CDS |
| GTAACACTTCAACGAGATCT+GGG | 0.548255 | 5_2:+61954343 | None:intergenic |
| TGAGGAAGGTAAAAGAGAGA+AGG | 0.548951 | 5_2:-61953995 | Msa0780250:CDS |
| GCAGTTGACGAGCATGGAGT+TGG | 0.554671 | 5_2:+61951321 | None:intergenic |
| TCGAGAGGTCCATGAAAAGA+AGG | 0.555169 | 5_2:-61951382 | Msa0780250:CDS |
| TCAACAACCATAGTATCAGC+AGG | 0.558053 | 5_2:+61953106 | None:intergenic |
| CGGGATTGAAGAAGTTGAAG+GGG | 0.558106 | 5_2:-61953450 | Msa0780250:CDS |
| GGTGTGTGGAAGATGAAAAT+GGG | 0.559834 | 5_2:+61954579 | None:intergenic |
| TGATGCTGTTAAGGAAAAGA+TGG | 0.565414 | 5_2:+61954554 | None:intergenic |
| ACACGATAAATCAACGGAAG+AGG | 0.568105 | 5_2:+61951203 | None:intergenic |
| TTGTTAGAGTCTGAAGCTAA+AGG | 0.569033 | 5_2:-61952974 | Msa0780250:CDS |
| GTTTGAAAATGAGGTTGGCA+TGG | 0.573659 | 5_2:-61951280 | Msa0780250:CDS |
| AGAAGGAAAGTTGTGAAGCT+CGG | 0.573889 | 5_2:-61953978 | Msa0780250:CDS |
| TTGAGGGAAATGTGTGAGGA+AGG | 0.576476 | 5_2:-61954009 | Msa0780250:CDS |
| TGTTAGAGATGAAGAAGCTG+TGG | 0.578329 | 5_2:-61954394 | Msa0780250:CDS |
| TGAACTGCAGTTGACGAGCA+TGG | 0.589481 | 5_2:+61951315 | None:intergenic |
| AGGAAAAGATGGTCGGTGTG+TGG | 0.591085 | 5_2:+61954565 | None:intergenic |
| TGAAGAAAGTGAAAGTAGCT+GGG | 0.598840 | 5_2:-61954083 | Msa0780250:CDS |
| CTCTGGTGGTGGAAACGATG+AGG | 0.601316 | 5_2:-61953137 | Msa0780250:CDS |
| AGTGTAGATACCTCTGGTGG+TGG | 0.602833 | 5_2:-61953148 | Msa0780250:CDS |
| GGAGAAACAAAAGTTTCAAG+AGG | 0.606040 | 5_2:-61954214 | Msa0780250:CDS |
| TGGCAACTATAAGTGAGTTG+AGG | 0.607774 | 5_2:-61953297 | Msa0780250:CDS |
| GTGCCAAGTTAAGAAGTCGA+AGG | 0.610870 | 5_2:-61953878 | Msa0780250:CDS |
| TCTGGTGGTGGAAACGATGA+GGG | 0.614819 | 5_2:-61953136 | Msa0780250:CDS |
| AGTCCTCAGGTGCAAAACAA+CGG | 0.617401 | 5_2:-61953010 | Msa0780250:CDS |
| GAAAGAGGAACATTGAGTTG+AGG | 0.620134 | 5_2:-61954026 | Msa0780250:CDS |
| TCTAACAAGAATCACAGGGT+TGG | 0.623457 | 5_2:+61954410 | None:intergenic |
| ATTGGCAGACGAGAAGCTCA+AGG | 0.630706 | 5_2:-61953260 | Msa0780250:CDS |
| TGAAAGAGTTGCAAGGTTGG+AGG | 0.631396 | 5_2:-61953191 | Msa0780250:CDS |
| AGATGACAACACACTTAATG+TGG | 0.632788 | 5_2:-61953602 | Msa0780250:CDS |
| TTCAACCCAAAATCGAACCT+GGG | 0.633225 | 5_2:-61954446 | Msa0780250:CDS |
| AATTGCATGAAAGAGTTGCA+AGG | 0.633271 | 5_2:-61953198 | Msa0780250:CDS |
| CATCTCTAACAAGAATCACA+GGG | 0.641894 | 5_2:+61954406 | None:intergenic |
| ATCGAGACACGATAAATCAA+CGG | 0.643640 | 5_2:+61951197 | None:intergenic |
| CTCATCGTTTCCACCACCAG+AGG | 0.650565 | 5_2:+61953138 | None:intergenic |
| GTTGCGCTAAACAAAACGAA+TGG | 0.654742 | 5_2:-61953493 | Msa0780250:CDS |
| TTGGTGGAAGATGATGACCC+AGG | 0.663433 | 5_2:+61954429 | None:intergenic |
| GCAAAACAACGGGAGCAAAG+AGG | 0.667911 | 5_2:-61952999 | Msa0780250:CDS |
| TGAGTTGAGGGAAATGTGTG+AGG | 0.685982 | 5_2:-61954013 | Msa0780250:CDS |
| TGATCAGTGTGTGTCTCGAG+AGG | 0.696182 | 5_2:-61951397 | Msa0780250:CDS |
| GCTGTTAAGGAAAAGATGGT+CGG | 0.720324 | 5_2:+61954558 | None:intergenic |
| ACAACCATAGTATCAGCAGG+AGG | 0.723572 | 5_2:+61953109 | None:intergenic |
| ATGAGTGTAGATACCTCTGG+TGG | 0.724549 | 5_2:-61953151 | Msa0780250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAAAAAGAGTTTTTTTT+AGG | + | chr5_2:61951279-61951298 | None:intergenic | 15.0% |
| !!! | TTATCTATTTTATTAAAGCA+AGG | - | chr5_2:61952985-61953004 | Msa0780250:CDS | 15.0% |
| !!! | AAAATGAGTTTTGAGAAAAT+GGG | + | chr5_2:61951254-61951273 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAACTTCATCA+AGG | + | chr5_2:61953624-61953643 | None:intergenic | 20.0% |
| !!! | TTTGTTTGTTTTTTGTTTTC+TGG | + | chr5_2:61953647-61953666 | None:intergenic | 20.0% |
| !! | AAAATTGATGAAAAATGTAG+TGG | + | chr5_2:61953823-61953842 | None:intergenic | 20.0% |
| !! | CTTATAATCATGTTTATCTA+TGG | + | chr5_2:61954125-61954144 | None:intergenic | 20.0% |
| !!! | GAAAATGAGTTTTGAGAAAA+TGG | + | chr5_2:61951255-61951274 | None:intergenic | 25.0% |
| ! | ATCATGATAAGGCTTAAAAA+TGG | + | chr5_2:61951313-61951332 | None:intergenic | 25.0% |
| ! | TAAGAAAGTGAAAAAACTAG+AGG | - | chr5_2:61951657-61951676 | Msa0780250:intron | 25.0% |
| !! | TTTGGAGTTGAACAAAAAAA+AGG | - | chr5_2:61952068-61952087 | Msa0780250:intron | 25.0% |
| !!! | TTTTAGAGTTGAAGGAAAAA+AGG | - | chr5_2:61952151-61952170 | Msa0780250:intron | 25.0% |
| !! | TTTAGAGTTGAAGGAAAAAA+GGG | - | chr5_2:61952152-61952171 | Msa0780250:intron | 25.0% |
| ! | GATTGAAAATGTCAAATTGA+AGG | - | chr5_2:61952443-61952462 | Msa0780250:intron | 25.0% |
| ! | ATCTACACTCATTAAAACTT+CGG | + | chr5_2:61952622-61952641 | None:intergenic | 25.0% |
| ! | TAATATTCAATATGCGTGAT+CGG | - | chr5_2:61952912-61952931 | Msa0780250:intron | 25.0% |
| ! | ATAGATAAATCACTGTTGTA+GGG | + | chr5_2:61952973-61952992 | None:intergenic | 25.0% |
| ! | AATAGATAAATCACTGTTGT+AGG | + | chr5_2:61952974-61952993 | None:intergenic | 25.0% |
| !! | GTTTTATAACTTCTTTGAAC+TGG | - | chr5_2:61953018-61953037 | Msa0780250:CDS | 25.0% |
| ! | TAATCGATTGTATTTCAATG+CGG | + | chr5_2:61953069-61953088 | None:intergenic | 25.0% |
| ! | TATGTAACATGGAATAAAGA+TGG | + | chr5_2:61953219-61953238 | None:intergenic | 25.0% |
| !! | GAAGTGGATAAAATTGTTTT+AGG | - | chr5_2:61953293-61953312 | Msa0780250:CDS | 25.0% |
| !!! | TTTTTTACCTATAACTTCTG+AGG | - | chr5_2:61953507-61953526 | Msa0780250:CDS | 25.0% |
| !! | TTTTTACCTATAACTTCTGA+GGG | - | chr5_2:61953508-61953527 | Msa0780250:CDS | 25.0% |
| ! | AAAAACTTCATCAAGGTATA+AGG | + | chr5_2:61953617-61953636 | None:intergenic | 25.0% |
| !!! | GGTATCAACATATTTTTTCA+TGG | + | chr5_2:61953802-61953821 | None:intergenic | 25.0% |
| ! | ATATGATGTTTAGACTTAAC+AGG | - | chr5_2:61953893-61953912 | Msa0780250:CDS | 25.0% |
| ! | AAACATGATTATAAGATGTG+TGG | - | chr5_2:61954130-61954149 | Msa0780250:CDS | 25.0% |
| GAAAGAAGGAAAAATGAATG+AGG | + | chr5_2:61951149-61951168 | None:intergenic | 30.0% | |
| AGGCTTAAAAATGGAAACTT+TGG | + | chr5_2:61951304-61951323 | None:intergenic | 30.0% | |
| TTTACAGCACAATGTTGAAA+TGG | - | chr5_2:61951546-61951565 | Msa0780250:intron | 30.0% | |
| TCTTTGCTTAAAATCTTCCT+CGG | + | chr5_2:61951626-61951645 | None:intergenic | 30.0% | |
| AAGTGAAAAAACTAGAGGAA+CGG | - | chr5_2:61951662-61951681 | Msa0780250:intron | 30.0% | |
| ATCAGCTAAACTAGTTATCT+CGG | + | chr5_2:61951839-61951858 | None:intergenic | 30.0% | |
| !!! | TTTTGGTGTTGAAGGAAAAA+AGG | - | chr5_2:61951983-61952002 | Msa0780250:intron | 30.0% |
| !! | TTTGGTGTTGAAGGAAAAAA+GGG | - | chr5_2:61951984-61952003 | Msa0780250:intron | 30.0% |
| ! | ACAATTTTGTTGATGTGCTA+AGG | - | chr5_2:61952016-61952035 | Msa0780250:intron | 30.0% |
| GAATTATGAGTTAGAATCTG+AGG | - | chr5_2:61952212-61952231 | Msa0780250:intron | 30.0% | |
| TGAATTAGAGTTGGAAGTTT+CGG | - | chr5_2:61952311-61952330 | Msa0780250:intron | 30.0% | |
| GAGGAGCAAAAAGATAAAAT+TGG | - | chr5_2:61952503-61952522 | Msa0780250:intron | 30.0% | |
| GAGTCTTTAAACACAAAGTT+CGG | - | chr5_2:61952558-61952577 | Msa0780250:intron | 30.0% | |
| TTCTGTAGAGAAAGATAAAG+AGG | - | chr5_2:61952698-61952717 | Msa0780250:intron | 30.0% | |
| TACATAATTTCCAAACCTGA+TGG | + | chr5_2:61952837-61952856 | None:intergenic | 30.0% | |
| CAGAAAATGCATATCTCTAT+AGG | + | chr5_2:61952874-61952893 | None:intergenic | 30.0% | |
| TAATTGGTTAGAAGATTGCT+AGG | - | chr5_2:61952940-61952959 | Msa0780250:intron | 30.0% | |
| ! | ATACAATCGATTAGTCATCA+TGG | - | chr5_2:61953076-61953095 | Msa0780250:CDS | 30.0% |
| AAGATAAACTCAATTAGCAC+CGG | - | chr5_2:61953124-61953143 | Msa0780250:CDS | 30.0% | |
| ATTCCTATGGAAATAAGAAG+TGG | - | chr5_2:61953277-61953296 | Msa0780250:CDS | 30.0% | |
| ! | TATCCACTTCTTATTTCCAT+AGG | + | chr5_2:61953283-61953302 | None:intergenic | 30.0% |
| TTTGCAAGAATAGAGAGTTT+AGG | + | chr5_2:61953352-61953371 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCCGAATTTTAGC+AGG | - | chr5_2:61953393-61953412 | Msa0780250:CDS | 30.0% |
| !! | TTGTTTTCCGAATTTTAGCA+GGG | - | chr5_2:61953394-61953413 | Msa0780250:CDS | 30.0% |
| TGTATTCTGTTCAGATTTGT+AGG | - | chr5_2:61953478-61953497 | Msa0780250:CDS | 30.0% | |
| GTATTCTGTTCAGATTTGTA+GGG | - | chr5_2:61953479-61953498 | Msa0780250:CDS | 30.0% | |
| ! | TTTTACCTATAACTTCTGAG+GGG | - | chr5_2:61953509-61953528 | Msa0780250:CDS | 30.0% |
| TATAGCCATAGAAACTGATT+AGG | - | chr5_2:61953710-61953729 | Msa0780250:CDS | 30.0% | |
| ! | GGCTATCATTTTCTAACTAA+TGG | + | chr5_2:61953781-61953800 | None:intergenic | 30.0% |
| ! | TTTGAAATTATTGCACTGGA+TGG | + | chr5_2:61953846-61953865 | None:intergenic | 30.0% |
| ! | CTTGTTTGAAATTATTGCAC+TGG | + | chr5_2:61953850-61953869 | None:intergenic | 30.0% |
| TGATATGACATTAACGATGT+TGG | - | chr5_2:61954042-61954061 | Msa0780250:CDS | 30.0% | |
| GATATGACATTAACGATGTT+GGG | - | chr5_2:61954043-61954062 | Msa0780250:CDS | 30.0% | |
| AAGCAAACACTTGGAATATA+AGG | + | chr5_2:61954287-61954306 | None:intergenic | 30.0% | |
| ATAATACTCAAGCAAACACT+TGG | + | chr5_2:61954296-61954315 | None:intergenic | 30.0% | |
| ATGATCATGATCATTCTTCA+TGG | + | chr5_2:61954440-61954459 | None:intergenic | 30.0% | |
| AATAGCCAAGTTTGAAAATG+AGG | - | chr5_2:61954492-61954511 | Msa0780250:five_prime_UTR | 30.0% | |
| GTCTCGATAATCTTACTATA+AGG | - | chr5_2:61954599-61954618 | Msa0780250:five_prime_UTR | 30.0% | |
| ! | TTTTTCCTTCTTTCAGCTTC+AGG | - | chr5_2:61951155-61951174 | Msa0780250:CDS | 35.0% |
| TGATGCTGTTAAGGAAAAGA+TGG | + | chr5_2:61951230-61951249 | None:intergenic | 35.0% | |
| !! | AAAATGGGTTGATGCTGTTA+AGG | + | chr5_2:61951239-61951258 | None:intergenic | 35.0% |
| ! | TGGGTTGAATGATCATGATA+AGG | + | chr5_2:61951324-61951343 | None:intergenic | 35.0% |
| CATCTCTAACAAGAATCACA+GGG | + | chr5_2:61951378-61951397 | None:intergenic | 35.0% | |
| TCATCTCTAACAAGAATCAC+AGG | + | chr5_2:61951379-61951398 | None:intergenic | 35.0% | |
| ! | TGACAATGTTGAACGTGTTT+TGG | - | chr5_2:61951486-61951505 | Msa0780250:intron | 35.0% |
| TGTGCTGTAAATGTAGAATC+TGG | + | chr5_2:61951537-61951556 | None:intergenic | 35.0% | |
| GGAGAAACAAAAGTTTCAAG+AGG | - | chr5_2:61951567-61951586 | Msa0780250:intron | 35.0% | |
| ! | TTGAATTGGAGAAACTTGCT+AGG | - | chr5_2:61951593-61951612 | Msa0780250:intron | 35.0% |
| TTGAAGAAAGTGAAAGTAGC+TGG | - | chr5_2:61951697-61951716 | Msa0780250:intron | 35.0% | |
| TGAAGAAAGTGAAAGTAGCT+GGG | - | chr5_2:61951698-61951717 | Msa0780250:intron | 35.0% | |
| !! | AAAGAGGAACATTGAGTTGA+GGG | - | chr5_2:61951756-61951775 | Msa0780250:intron | 35.0% |
| TTAGCTGATAGAGACACTAT+TGG | - | chr5_2:61951850-61951869 | Msa0780250:intron | 35.0% | |
| CTATTGGAGAGCTTAAAAAG+AGG | - | chr5_2:61951866-61951885 | Msa0780250:intron | 35.0% | |
| !! | TGAGTTAGAGCTTCAAGTTT+TGG | - | chr5_2:61951966-61951985 | Msa0780250:intron | 35.0% |
| !! | TGAACTAGAGCATCAAGTTT+TGG | - | chr5_2:61952050-61952069 | Msa0780250:intron | 35.0% |
| GGAGTTGAACAAAAAAAAGG+TGG | - | chr5_2:61952071-61952090 | Msa0780250:intron | 35.0% | |
| !!! | GCATGAAGTTTTAGAGTTGA+AGG | - | chr5_2:61952143-61952162 | Msa0780250:intron | 35.0% |
| AGATGACAACACACTTAATG+TGG | - | chr5_2:61952179-61952198 | Msa0780250:intron | 35.0% | |
| !! | TGAGTTAGAATCTGAGGTTT+TGG | - | chr5_2:61952218-61952237 | Msa0780250:intron | 35.0% |
| AACGAATGGTGAATTAGAGT+TGG | - | chr5_2:61952302-61952321 | Msa0780250:intron | 35.0% | |
| GAATTAGAGTTGGAAGTTTC+GGG | - | chr5_2:61952312-61952331 | Msa0780250:intron | 35.0% | |
| GGAGAATGATAAAACTGCTT+TGG | - | chr5_2:61952410-61952429 | Msa0780250:intron | 35.0% | |
| AATGATAAAACTGCTTTGGC+TGG | - | chr5_2:61952414-61952433 | Msa0780250:intron | 35.0% | |
| GGAAACGTTGAACAACAATT+TGG | - | chr5_2:61952464-61952483 | Msa0780250:intron | 35.0% | |
| AATTGCATGAAAGAGTTGCA+AGG | - | chr5_2:61952583-61952602 | Msa0780250:intron | 35.0% | |
| TTAATGAGTGTAGATACCTC+TGG | - | chr5_2:61952627-61952646 | Msa0780250:intron | 35.0% | |
| ! | TTGTTAGAGTCTGAAGCTAA+AGG | - | chr5_2:61952807-61952826 | Msa0780250:intron | 35.0% |
| TGCGTGATCGGATAAATAAT+TGG | - | chr5_2:61952924-61952943 | Msa0780250:intron | 35.0% | |
| ATAACTTCTTTGAACTGGTG+AGG | - | chr5_2:61953023-61953042 | Msa0780250:CDS | 35.0% | |
| AGATAAACTCAATTAGCACC+GGG | - | chr5_2:61953125-61953144 | Msa0780250:CDS | 35.0% | |
| ATATTATGGTCCTCTCTGTA+TGG | - | chr5_2:61953148-61953167 | Msa0780250:CDS | 35.0% | |
| AATTCACTTTCCATACAGAG+AGG | + | chr5_2:61953161-61953180 | None:intergenic | 35.0% | |
| ! | AAGATGGACTCAAGAAAAGA+AGG | + | chr5_2:61953203-61953222 | None:intergenic | 35.0% |
| TTAGCTGGATTTGATTCCTA+TGG | - | chr5_2:61953264-61953283 | Msa0780250:CDS | 35.0% | |
| TCTATTCTTGCAAAGATGCA+TGG | - | chr5_2:61953358-61953377 | Msa0780250:CDS | 35.0% | |
| CTATTCTTGCAAAGATGCAT+GGG | - | chr5_2:61953359-61953378 | Msa0780250:CDS | 35.0% | |
| AATAGTGCCCTGCTAAAATT+CGG | + | chr5_2:61953404-61953423 | None:intergenic | 35.0% | |
| !! | AGTTCAGCTCTTTTATTTCG+AGG | - | chr5_2:61953443-61953462 | Msa0780250:CDS | 35.0% |
| ! | TGGTTTGTCTGAAACTGATT+AGG | - | chr5_2:61953687-61953706 | Msa0780250:CDS | 35.0% |
| TGCTACCTAATCAGTTTCTA+TGG | + | chr5_2:61953718-61953737 | None:intergenic | 35.0% | |
| CTAAATGTAGGCTATTTGCT+TGG | + | chr5_2:61953922-61953941 | None:intergenic | 35.0% | |
| CACATCGTATAGCTAAATGT+AGG | + | chr5_2:61953934-61953953 | None:intergenic | 35.0% | |
| ACATTTAGCTATACGATGTG+TGG | - | chr5_2:61953934-61953953 | Msa0780250:CDS | 35.0% | |
| GAAATGTGTGAAAAAGGTAG+TGG | + | chr5_2:61953989-61954008 | None:intergenic | 35.0% | |
| TGTGACGAAATGTGTGAAAA+AGG | + | chr5_2:61953995-61954014 | None:intergenic | 35.0% | |
| ! | TGTTAGGACTGTTTTCTCTT+TGG | - | chr5_2:61954079-61954098 | Msa0780250:CDS | 35.0% |
| CCAATGAATATACTGCTAGT+AGG | + | chr5_2:61954248-61954267 | None:intergenic | 35.0% | |
| CCTACTAGCAGTATATTCAT+TGG | - | chr5_2:61954245-61954264 | Msa0780250:CDS | 35.0% | |
| ATCGAGACACGATAAATCAA+CGG | + | chr5_2:61954587-61954606 | None:intergenic | 35.0% | |
| !!! | CTTTTTTGCTTGTGATGTCA+TGG | + | chr5_2:61954626-61954645 | None:intergenic | 35.0% |
| GGTGTGTGGAAGATGAAAAT+GGG | + | chr5_2:61951205-61951224 | None:intergenic | 40.0% | |
| GCTGTTAAGGAAAAGATGGT+CGG | + | chr5_2:61951226-61951245 | None:intergenic | 40.0% | |
| ATTCAACCCAAAATCGAACC+TGG | - | chr5_2:61951334-61951353 | Msa0780250:CDS | 40.0% | |
| TTCAACCCAAAATCGAACCT+GGG | - | chr5_2:61951335-61951354 | Msa0780250:CDS | 40.0% | |
| TCTAACAAGAATCACAGGGT+TGG | + | chr5_2:61951374-61951393 | None:intergenic | 40.0% | |
| TGTTAGAGATGAAGAAGCTG+TGG | - | chr5_2:61951387-61951406 | Msa0780250:CDS | 40.0% | |
| GTAACACTTCAACGAGATCT+GGG | + | chr5_2:61951441-61951460 | None:intergenic | 40.0% | |
| AGTAACACTTCAACGAGATC+TGG | + | chr5_2:61951442-61951461 | None:intergenic | 40.0% | |
| GTTTCAAGAGGAGCTTGAAT+TGG | - | chr5_2:61951579-61951598 | Msa0780250:intron | 40.0% | |
| AAAGTGAAAGTAGCTGGGTT+AGG | - | chr5_2:61951703-61951722 | Msa0780250:intron | 40.0% | |
| !! | CTGTTGATGTTCTGAGAAAG+AGG | - | chr5_2:61951740-61951759 | Msa0780250:intron | 40.0% |
| ! | GAAAGAGGAACATTGAGTTG+AGG | - | chr5_2:61951755-61951774 | Msa0780250:intron | 40.0% |
| TGAGGAAGGTAAAAGAGAGA+AGG | - | chr5_2:61951786-61951805 | Msa0780250:intron | 40.0% | |
| AGAAGGAAAGTTGTGAAGCT+CGG | - | chr5_2:61951803-61951822 | Msa0780250:intron | 40.0% | |
| CTTCCTTCGACTTCTTAACT+TGG | + | chr5_2:61951909-61951928 | None:intergenic | 40.0% | |
| GTTAAGAAGTCGAAGGAAGA+TGG | - | chr5_2:61951910-61951929 | Msa0780250:intron | 40.0% | |
| !!! | GCTTCAAGTTTTGGTGTTGA+AGG | - | chr5_2:61951975-61951994 | Msa0780250:intron | 40.0% |
| AGAGTTGAAGGAAAAAAGGG+TGG | - | chr5_2:61952155-61952174 | Msa0780250:intron | 40.0% | |
| GAGTTGAAGGAAAAAAGGGT+GGG | - | chr5_2:61952156-61952175 | Msa0780250:intron | 40.0% | |
| !!! | AATCTGAGGTTTTGGAGTTG+AGG | - | chr5_2:61952226-61952245 | Msa0780250:intron | 40.0% |
| ! | TTTGGAGTTGAGGAAGTTGA+AGG | - | chr5_2:61952236-61952255 | Msa0780250:intron | 40.0% |
| TGAGGAAGTTGAAGGATAAG+TGG | - | chr5_2:61952244-61952263 | Msa0780250:intron | 40.0% | |
| GTTGCGCTAAACAAAACGAA+TGG | - | chr5_2:61952288-61952307 | Msa0780250:intron | 40.0% | |
| TTCGGGATTGAAGAAGTTGA+AGG | - | chr5_2:61952329-61952348 | Msa0780250:intron | 40.0% | |
| TCGGGATTGAAGAAGTTGAA+GGG | - | chr5_2:61952330-61952349 | Msa0780250:intron | 40.0% | |
| TGGCAACTATAAGTGAGTTG+AGG | - | chr5_2:61952484-61952503 | Msa0780250:intron | 40.0% | |
| TCAACAACCATAGTATCAGC+AGG | + | chr5_2:61952678-61952697 | None:intergenic | 40.0% | |
| GATTGTATTTCAATGCGGTC+TGG | + | chr5_2:61953064-61953083 | None:intergenic | 40.0% | |
| ! | CAATTAGCACCGGGATATTA+TGG | - | chr5_2:61953134-61953153 | Msa0780250:CDS | 40.0% |
| AAGAACCCCTCAGAAGTTAT+AGG | + | chr5_2:61953517-61953536 | None:intergenic | 40.0% | |
| TGAGTGGTGAAATTTGGCAT+TGG | + | chr5_2:61953747-61953766 | None:intergenic | 40.0% | |
| CTTCAGTGAGTGGTGAAATT+TGG | + | chr5_2:61953753-61953772 | None:intergenic | 40.0% | |
| AATTTCACCACTCACTGAAG+AGG | - | chr5_2:61953753-61953772 | Msa0780250:CDS | 40.0% | |
| ! | GGTAGTGGTTTACATGCAAT+GGG | + | chr5_2:61953974-61953993 | None:intergenic | 40.0% |
| ! | AGGTAGTGGTTTACATGCAA+TGG | + | chr5_2:61953975-61953994 | None:intergenic | 40.0% |
| ! | TTACTTTAAGAGCCAGAAGC+TGG | - | chr5_2:61954202-61954221 | Msa0780250:CDS | 40.0% |
| TTCAAGGAAAATCCAGCTTC+TGG | + | chr5_2:61954217-61954236 | None:intergenic | 40.0% | |
| AATATACTGCTAGTAGGCTC+AGG | + | chr5_2:61954242-61954261 | None:intergenic | 40.0% | |
| ACACACACTGATCAACATCT+TGG | + | chr5_2:61954378-61954397 | None:intergenic | 40.0% | |
| ! | CAGAAATGGCCTTCTTTTCA+TGG | + | chr5_2:61954411-61954430 | None:intergenic | 40.0% |
| CATGAAAAGAAGGCCATTTC+TGG | - | chr5_2:61954409-61954428 | Msa0780250:CDS | 40.0% | |
| CTTCATGGCAATTCCAGAAA+TGG | + | chr5_2:61954425-61954444 | None:intergenic | 40.0% | |
| GCCAAGTTTGAAAATGAGGT+TGG | - | chr5_2:61954496-61954515 | Msa0780250:five_prime_UTR | 40.0% | |
| ! | GCCAACCTCATTTTCAAACT+TGG | + | chr5_2:61954500-61954519 | None:intergenic | 40.0% |
| GTTTGAAAATGAGGTTGGCA+TGG | - | chr5_2:61954501-61954520 | Msa0780250:five_prime_UTR | 40.0% | |
| ACACGATAAATCAACGGAAG+AGG | + | chr5_2:61954581-61954600 | None:intergenic | 40.0% | |
| AGTGTCCTGAAGCTGAAAGA+AGG | + | chr5_2:61951163-61951182 | None:intergenic | 45.0% | |
| CGGTGTGTGGAAGATGAAAA+TGG | + | chr5_2:61951206-61951225 | None:intergenic | 45.0% | |
| ! | GATGACCCAGGTTCGATTTT+GGG | + | chr5_2:61951343-61951362 | None:intergenic | 45.0% |
| ! | TGATGACCCAGGTTCGATTT+TGG | + | chr5_2:61951344-61951363 | None:intergenic | 45.0% |
| AACAAGAATCACAGGGTTGG+TGG | + | chr5_2:61951371-61951390 | None:intergenic | 45.0% | |
| !! | GGAGAAACTTGCTAGGTTAC+AGG | - | chr5_2:61951600-61951619 | Msa0780250:intron | 45.0% |
| ! | TGAGTTGAGGGAAATGTGTG+AGG | - | chr5_2:61951768-61951787 | Msa0780250:intron | 45.0% |
| TTGAGGGAAATGTGTGAGGA+AGG | - | chr5_2:61951772-61951791 | Msa0780250:intron | 45.0% | |
| AAGTTGTGAAGCTCGGTTGA+AGG | - | chr5_2:61951810-61951829 | Msa0780250:intron | 45.0% | |
| GTGCCAAGTTAAGAAGTCGA+AGG | - | chr5_2:61951903-61951922 | Msa0780250:intron | 45.0% | |
| ! | GGTGTTGAAGGAAAAAAGGG+TGG | - | chr5_2:61951987-61952006 | Msa0780250:intron | 45.0% |
| CGGGATTGAAGAAGTTGAAG+GGG | - | chr5_2:61952331-61952350 | Msa0780250:intron | 45.0% | |
| TGAAGAAGTTGAAGGGGAAG+TGG | - | chr5_2:61952337-61952356 | Msa0780250:intron | 45.0% | |
| GAAGAAGTTGAAGGGGAAGT+GGG | - | chr5_2:61952338-61952357 | Msa0780250:intron | 45.0% | |
| TGTTGATGTGCTTCGAAGCA+AGG | - | chr5_2:61952377-61952396 | Msa0780250:intron | 45.0% | |
| TCGAAGCAAGGTTCGAGTAT+TGG | - | chr5_2:61952389-61952408 | Msa0780250:intron | 45.0% | |
| GCATGAAAGAGTTGCAAGGT+TGG | - | chr5_2:61952587-61952606 | Msa0780250:intron | 45.0% | |
| TGAAAGAGTTGCAAGGTTGG+AGG | - | chr5_2:61952590-61952609 | Msa0780250:intron | 45.0% | |
| ATGAGTGTAGATACCTCTGG+TGG | - | chr5_2:61952630-61952649 | Msa0780250:intron | 45.0% | |
| ACAACCATAGTATCAGCAGG+AGG | + | chr5_2:61952675-61952694 | None:intergenic | 45.0% | |
| AGTCCTCAGGTGCAAAACAA+CGG | - | chr5_2:61952771-61952790 | Msa0780250:intron | 45.0% | |
| ! | TAAAGGTGCACCATCAGGTT+TGG | - | chr5_2:61952824-61952843 | Msa0780250:intron | 45.0% |
| CAGAGAGGACCATAATATCC+CGG | + | chr5_2:61953146-61953165 | None:intergenic | 45.0% | |
| CTTGGTTGGGCTATGTAACA+TGG | + | chr5_2:61953230-61953249 | None:intergenic | 45.0% | |
| TACATAGCCCAACCAAGCTA+TGG | - | chr5_2:61953233-61953252 | Msa0780250:CDS | 45.0% | |
| ACATAGCCCAACCAAGCTAT+GGG | - | chr5_2:61953234-61953253 | Msa0780250:CDS | 45.0% | |
| CTAAAAGAGAGCCCATAGCT+TGG | + | chr5_2:61953248-61953267 | None:intergenic | 45.0% | |
| AGCAGCTAAGAACACTCGTT+TGG | - | chr5_2:61953667-61953686 | Msa0780250:CDS | 45.0% | |
| GGGCACTTATCTTACGTGTT+AGG | - | chr5_2:61954063-61954082 | Msa0780250:CDS | 45.0% | |
| CTAGTAGGCTCAGGATTTCA+AGG | + | chr5_2:61954233-61954252 | None:intergenic | 45.0% | |
| TCGAGAGGTCCATGAAAAGA+AGG | - | chr5_2:61954399-61954418 | Msa0780250:CDS | 45.0% | |
| AGAGGACGAAGAAGAAGAAG+TGG | + | chr5_2:61954563-61954582 | None:intergenic | 45.0% | |
| AGGAAAAGATGGTCGGTGTG+TGG | + | chr5_2:61951219-61951238 | None:intergenic | 50.0% | |
| TTGGTGGAAGATGATGACCC+AGG | + | chr5_2:61951355-61951374 | None:intergenic | 50.0% | |
| ATTGGCAGACGAGAAGCTCA+AGG | - | chr5_2:61952521-61952540 | Msa0780250:intron | 50.0% | |
| AGACGAGAAGCTCAAGGTTG+AGG | - | chr5_2:61952527-61952546 | Msa0780250:intron | 50.0% | |
| AGTGTAGATACCTCTGGTGG+TGG | - | chr5_2:61952633-61952652 | Msa0780250:intron | 50.0% | |
| !! | TCTGGTGGTGGAAACGATGA+GGG | - | chr5_2:61952645-61952664 | Msa0780250:intron | 50.0% |
| !! | GTTGTTTTGCACCTGAGGAC+TGG | + | chr5_2:61952772-61952791 | None:intergenic | 50.0% |
| GTCCTCAGGTGCAAAACAAC+GGG | - | chr5_2:61952772-61952791 | Msa0780250:intron | 50.0% | |
| GCAAAACAACGGGAGCAAAG+AGG | - | chr5_2:61952782-61952801 | Msa0780250:intron | 50.0% | |
| ! | GAAGCTAAAGGTGCACCATC+AGG | - | chr5_2:61952819-61952838 | Msa0780250:intron | 50.0% |
| AGAGAGCCCATAGCTTGGTT+GGG | + | chr5_2:61953243-61953262 | None:intergenic | 50.0% | |
| AAGAGAGCCCATAGCTTGGT+TGG | + | chr5_2:61953244-61953263 | None:intergenic | 50.0% | |
| ! | GCTATGGGCTCTCTTTTAGC+TGG | - | chr5_2:61953249-61953268 | Msa0780250:CDS | 50.0% |
| AATGGTGCCTCTTCAGTGAG+TGG | + | chr5_2:61953763-61953782 | None:intergenic | 50.0% | |
| TGATCAGTGTGTGTCTCGAG+AGG | - | chr5_2:61954384-61954403 | Msa0780250:CDS | 50.0% | |
| TGAACTGCAGTTGACGAGCA+TGG | + | chr5_2:61954469-61954488 | None:intergenic | 50.0% | |
| GGACGAAGAAGAAGAAGTGG+AGG | + | chr5_2:61954560-61954579 | None:intergenic | 50.0% | |
| ! | ACTTGCTAGGTTACAGGCCG+AGG | - | chr5_2:61951606-61951625 | Msa0780250:intron | 55.0% |
| !! | GCTGGGTTAGGTGCTGATAG+TGG | - | chr5_2:61951715-61951734 | Msa0780250:intron | 55.0% |
| CTCATCGTTTCCACCACCAG+AGG | + | chr5_2:61952646-61952665 | None:intergenic | 55.0% | |
| !! | CTCTGGTGGTGGAAACGATG+AGG | - | chr5_2:61952644-61952663 | Msa0780250:intron | 55.0% |
| CGAGCCTCCTGCTGATACTA+TGG | - | chr5_2:61952668-61952687 | Msa0780250:intron | 55.0% | |
| !! | CTCCCGTTGTTTTGCACCTG+AGG | + | chr5_2:61952777-61952796 | None:intergenic | 55.0% |
| GCAGTTGACGAGCATGGAGT+TGG | + | chr5_2:61954463-61954482 | None:intergenic | 55.0% | |
| CAAGCTAGCTGCCAGTCCTC+AGG | - | chr5_2:61952758-61952777 | Msa0780250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 61951146 | 61954657 | 61951146 | ID=Msa0780250;Name=Msa0780250 |
| chr5_2 | mRNA | 61951146 | 61954657 | 61951146 | ID=Msa0780250-mRNA-1;Parent=Msa0780250;Name=Msa0780250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=182|1|0.5|1|1|1|2|0|599 |
| chr5_2 | exon | 61951146 | 61951432 | 61951146 | ID=Msa0780250-mRNA-1:exon:18288;Parent=Msa0780250-mRNA-1 |
| chr5_2 | exon | 61952963 | 61954657 | 61952963 | ID=Msa0780250-mRNA-1:exon:18287;Parent=Msa0780250-mRNA-1 |
| chr5_2 | five_prime_UTR | 61954476 | 61954657 | 61954476 | ID=Msa0780250-mRNA-1:five_prime_utr;Parent=Msa0780250-mRNA-1 |
| chr5_2 | CDS | 61952963 | 61954475 | 61952963 | ID=Msa0780250-mRNA-1:cds;Parent=Msa0780250-mRNA-1 |
| chr5_2 | CDS | 61951146 | 61951432 | 61951146 | ID=Msa0780250-mRNA-1:cds;Parent=Msa0780250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
