AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1298830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298830 MtrunA17_Chr4g0058701 91.902 778 22 2 1 737 1 778 0.0 1469
Msa1298830 MtrunA17_Chr3g0117141 66.144 765 206 6 21 737 27 786 0.0 1027
Msa1298830 MtrunA17_Chr6g0449521 59.487 780 258 8 5 737 19 787 0.0 919
Msa1298830 MtrunA17_Chr4g0064311 36.328 757 382 14 20 720 102 814 4.53e-160 484
Msa1298830 MtrunA17_Chr1g0173521 36.506 767 384 16 20 727 62 784 5.60e-153 464
Msa1298830 MtrunA17_Chr5g0447201 36.933 750 376 16 22 705 7 725 1.81e-151 459
Msa1298830 MtrunA17_Chr7g0267991 47.246 472 198 8 295 724 383 845 1.11e-140 434
Msa1298830 MtrunA17_Chr7g0267991 44.025 318 156 5 1 307 1 307 1.44e-71 250
Msa1298830 MtrunA17_Chr3g0116641 32.868 788 412 20 23 737 8 751 3.26e-136 419
Msa1298830 MtrunA17_Chr7g0257731 34.831 623 311 15 175 725 2 601 2.90e-111 350
Msa1298830 MtrunA17_Chr8g0380141 48.214 336 132 3 302 597 377 710 2.45e-107 343
Msa1298830 MtrunA17_Chr8g0380141 41.509 318 163 5 1 307 1 306 1.73e-69 241
Msa1298830 MtrunA17_Chr1g0201161 56.654 263 112 2 288 550 367 627 8.18e-101 331
Msa1298830 MtrunA17_Chr1g0201161 42.453 318 165 4 1 307 1 311 2.25e-70 248
Msa1298830 MtrunA17_Chr1g0201161 34.659 176 110 4 551 724 737 909 4.10e-25 111
Msa1298830 MtrunA17_Chr7g0270181 42.061 359 156 6 408 724 2 350 1.48e-88 282
Msa1298830 MtrunA17_Chr7g0257741 39.726 146 74 4 22 161 7 144 1.14e-24 100
Msa1298830 MtrunA17_Chr8g0380131 37.255 102 60 3 624 724 5 103 2.66e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298830 AT5G40390.1 54.994 791 294 9 1 737 1 783 0.0 884
Msa1298830 AT4G01970.2 40.936 833 351 18 25 724 85 909 0.0 601
Msa1298830 AT4G01970.1 40.936 833 351 18 25 724 38 862 0.0 601
Msa1298830 AT5G20250.3 38.441 757 369 16 20 716 5 724 1.28e-160 483
Msa1298830 AT5G20250.1 38.441 757 369 16 20 716 5 724 1.28e-160 483
Msa1298830 AT5G20250.2 38.441 757 369 16 20 716 5 724 1.28e-160 483
Msa1298830 AT5G20250.4 38.441 757 369 16 20 716 100 819 1.12e-159 483
Msa1298830 AT3G57520.1 35.632 783 392 16 22 723 7 758 6.48e-157 474
Msa1298830 AT1G55740.1 36.521 753 388 14 22 714 7 729 3.05e-146 446
Msa1298830 AT3G57520.2 36.484 677 346 13 22 644 7 653 6.89e-141 429
Msa1298830 AT3G57520.3 40.884 543 279 10 22 550 7 521 2.57e-134 409

Find 188 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTTAAAGGAGGAATTT+AGG 0.117893 8_3:+59678100 Msa1298830:CDS
GGAATTTAGGGGTTTATTAA+AGG 0.167276 8_3:+59678113 Msa1298830:CDS
CCTGATATAGTTGATAAATT+TGG 0.170065 8_3:+59677796 Msa1298830:CDS
TCAACACCTTTCATGCAAAT+TGG 0.176895 8_3:-59680487 None:intergenic
GGATTTAAAGGAGGAATTTA+GGG 0.242835 8_3:+59678101 Msa1298830:CDS
TTTAATGAACGAAGCGATTA+AGG 0.244053 8_3:+59677723 Msa1298830:CDS
GCTTCGTTCATTAAAATATA+AGG 0.244616 8_3:-59677715 None:intergenic
TTGCTCCATTCAATGTCTTT+AGG 0.259060 8_3:-59680454 None:intergenic
ATAACAGTATAGTGGAGTTT+TGG 0.267213 8_3:+59680336 Msa1298830:intron
AAGGAGTATGATGAATCTTT+AGG 0.272087 8_3:+59678060 Msa1298830:CDS
GTCATTAGCTCGAAACTAAA+AGG 0.296547 8_3:-59680589 None:intergenic
CCATCAATCATACAACTTAT+CGG 0.299644 8_3:-59680787 None:intergenic
GCCGGAGTCGGTGGTGGTTC+CGG 0.313171 8_3:+59678200 Msa1298830:CDS
TTGAAATCTGTTGGTATTGA+TGG 0.321054 8_3:+59678348 Msa1298830:CDS
TCTTCAAACACCACCGTTGC+TGG 0.336587 8_3:+59677337 Msa1298830:CDS
TGAGAGGTGCATGACGGATT+TGG 0.338428 8_3:+59678242 Msa1298830:CDS
TACAACCGACATGCCTCTTC+TGG 0.339765 8_3:-59678306 None:intergenic
ATGGGACTTGAGTGAGGATT+GGG 0.346557 8_3:-59677270 None:intergenic
TGGGTTTGTGAGGGATTTAA+AGG 0.350425 8_3:+59678089 Msa1298830:CDS
CAACACCTTTCATGCAAATT+GGG 0.350937 8_3:-59680486 None:intergenic
CTCCTTGAGGGTCCACCTTA+AGG 0.352532 8_3:-59677843 None:intergenic
AGTGAGGATTGGGTGGTTAT+TGG 0.355885 8_3:-59677260 None:intergenic
CCAAATTTATCAACTATATC+AGG 0.357607 8_3:-59677796 None:intergenic
GGAGTGAAAGAAGGTGTTAA+GGG 0.361752 8_3:+59677862 Msa1298830:CDS
GCATATTTAGATTCAAACTA+TGG 0.362645 8_3:+59677443 Msa1298830:CDS
CCGATAAGTTGTATGATTGA+TGG 0.367738 8_3:+59680787 Msa1298830:CDS
GGTGTTAAGGGTTTAGTAGA+AGG 0.379904 8_3:+59677874 Msa1298830:CDS
CGGAGGTTCAATTATGTCAT+TGG 0.384333 8_3:+59680687 Msa1298830:CDS
AAGATAATGGAGATTGGAGT+TGG 0.391962 8_3:+59678273 Msa1298830:CDS
GGAGTGATGGTTATGTTTGA+TGG 0.392650 8_3:-59677289 None:intergenic
GCCGCTTCTCGTGCAATCTC+TGG 0.397589 8_3:+59679726 Msa1298830:CDS
CACCTTCTTTCACTCCTTGA+GGG 0.397852 8_3:-59677855 None:intergenic
TTGTTCTGCAAGGTTCTCAA+TGG 0.407213 8_3:+59680867 Msa1298830:CDS
GATGGGACTTGAGTGAGGAT+TGG 0.412194 8_3:-59677271 None:intergenic
CAAGTCCTAAAGACATTGAA+TGG 0.412198 8_3:+59680449 Msa1298830:CDS
TAGGTATGGGTGGGTTTGTG+AGG 0.413159 8_3:+59678079 Msa1298830:CDS
CATACAACTTATCGGCTTCT+CGG 0.415583 8_3:-59680779 None:intergenic
TCAATTCAATTTGCTCCAAT+CGG 0.425500 8_3:+59680643 Msa1298830:CDS
TCCGGCATCCCTTCAACATT+AGG 0.427596 8_3:-59678183 None:intergenic
AGGTATGGGTGGGTTTGTGA+GGG 0.427702 8_3:+59678080 Msa1298830:CDS
AGAATTGGGGTGAGAGGTCA+TGG 0.428267 8_3:+59680736 Msa1298830:CDS
GAGATGCTGTCAGAGGAATA+TGG 0.428417 8_3:+59679104 Msa1298830:CDS
TTTGGCGGTGGTGAAGATAA+TGG 0.430408 8_3:+59678260 Msa1298830:CDS
TGCAACCAATAGGTACCGTT+TGG 0.431398 8_3:-59679597 None:intergenic
TCCCTTGGCCTTGTTCTGCA+AGG 0.433474 8_3:+59680857 Msa1298830:CDS
CAAGAAGTTTGAATGTTCCT+AGG 0.437777 8_3:-59677759 None:intergenic
GTACCGTTTGGATCCCCAGC+TGG 0.439136 8_3:-59679585 None:intergenic
TGCTGCTTATAACAGTATAG+TGG 0.447051 8_3:+59680328 Msa1298830:intron
GGGATCCAAACGGTACCTAT+TGG 0.449564 8_3:+59679592 Msa1298830:CDS
CATTCTCATTTGAAATCTGT+TGG 0.452232 8_3:+59678339 Msa1298830:CDS
ACCAACTCGTCCAAGTGAAA+TGG 0.458370 8_3:-59679255 None:intergenic
GTTCCGGCGAAATTGTCACC+TGG 0.461142 8_3:+59678216 Msa1298830:CDS
ACCGTTGCTGGTTGCTTCGT+CGG 0.464810 8_3:+59677349 Msa1298830:CDS
AGGAGTGAAAGAAGGTGTTA+AGG 0.465288 8_3:+59677861 Msa1298830:CDS
TTTGGTGCACGGACCCAGCT+GGG 0.466953 8_3:+59679571 Msa1298830:CDS
ACAGAATCGCTAACATATAT+CGG 0.467807 8_3:-59679753 None:intergenic
TATGCTGGTGAATCTGATTC+CGG 0.468741 8_3:-59677425 None:intergenic
CTTCCCAACATTTGTTCACC+AGG 0.470201 8_3:-59678006 None:intergenic
CAGAACAAGGCCAAGGGACA+TGG 0.470570 8_3:-59680852 None:intergenic
TCATCAATGATTACAAAACT+TGG 0.472983 8_3:-59677907 None:intergenic
AACTATGGTGGAGCACTCAC+TGG 0.477809 8_3:+59677458 Msa1298830:CDS
GTTAAGGGTTTAGTAGAAGG+TGG 0.483094 8_3:+59677877 Msa1298830:CDS
GCCGGAACCACCACCGACTC+CGG 0.483490 8_3:-59678201 None:intergenic
CAGGGCACCACCCTCCTCCT+TGG 0.486184 8_3:-59680372 None:intergenic
GTATGATGAATCTTTAGGTA+TGG 0.486382 8_3:+59678065 Msa1298830:CDS
GTGACATCCTTGCAACCAAT+AGG 0.487759 8_3:-59679607 None:intergenic
TATGATGAATCTTTAGGTAT+GGG 0.490779 8_3:+59678066 Msa1298830:CDS
TGCAACGATTTCATGTTCCT+TGG 0.491430 8_3:+59679224 Msa1298830:CDS
AAGACATTGAATGGAGCAAA+GGG 0.491837 8_3:+59680458 Msa1298830:CDS
TATACCTGGTGAACAAATGT+TGG 0.493359 8_3:+59678002 Msa1298830:CDS
ACCATTTCACTTGGACGAGT+TGG 0.498213 8_3:+59679254 Msa1298830:CDS
TCAATTTGCTCCAATCGGAT+TGG 0.498694 8_3:+59680648 Msa1298830:CDS
ACACCTTCTTTCACTCCTTG+AGG 0.501161 8_3:-59677856 None:intergenic
TTCCGGCGAAATTGTCACCT+GGG 0.502369 8_3:+59678217 Msa1298830:CDS
ATACCTGGTGAACAAATGTT+GGG 0.502624 8_3:+59678003 Msa1298830:CDS
GAGTGATGGTTATGTTTGAT+GGG 0.503927 8_3:-59677288 None:intergenic
AATGGAGATTGGAGTTGGAT+TGG 0.504103 8_3:+59678278 Msa1298830:CDS
GGGATTAGACCTAATGTTGA+AGG 0.504892 8_3:+59678174 Msa1298830:CDS
TGCATATAACAGCTTATGGA+TGG 0.506401 8_3:+59679641 Msa1298830:CDS
ATCGTTGCACTGTTGCATAC+TGG 0.507352 8_3:-59679210 None:intergenic
TGAGAGGTCATGGAGAAATG+AGG 0.508249 8_3:+59680746 Msa1298830:CDS
TGGTGGGATGGGAATTGGCA+TGG 0.509869 8_3:-59677210 None:intergenic
GAAACTATGTGTCGGCTGCT+TGG 0.511555 8_3:-59677388 None:intergenic
ATTGTGCATATAACAGCTTA+TGG 0.511747 8_3:+59679637 Msa1298830:CDS
CTTCAAGTTACTCAAGAAGC+TGG 0.516648 8_3:+59679788 Msa1298830:CDS
AGGGATGCCGGAGTCGGTGG+TGG 0.517467 8_3:+59678194 Msa1298830:CDS
TTTGTGAGGTGGTGGAGTGA+TGG 0.518024 8_3:-59677302 None:intergenic
GTGGTGAAGATAATGGAGAT+TGG 0.519138 8_3:+59678267 Msa1298830:CDS
ATAAATTTGGATGGTGTACA+TGG 0.521845 8_3:+59677809 Msa1298830:CDS
TAGTTTGAATCTAAATATGC+TGG 0.521914 8_3:-59677440 None:intergenic
AGTTTGAATTGTTCTATACC+TGG 0.521967 8_3:+59677988 Msa1298830:CDS
ACCTAATGTTGAAGGGATGC+CGG 0.522847 8_3:+59678182 Msa1298830:CDS
TGGTGGAGCACTCACTGGAC+AGG 0.523576 8_3:+59677463 Msa1298830:CDS
CTATTCAATTGCCAAGGAGG+AGG 0.523965 8_3:+59680361 Msa1298830:CDS
GGTGGGATGGGAATTGGCAT+GGG 0.524201 8_3:-59677209 None:intergenic
CAATGACATAATTGAACCTC+CGG 0.526517 8_3:-59680686 None:intergenic
GTGTCGGCTGCTTGGTCCGT+CGG 0.526644 8_3:-59677380 None:intergenic
GAGGCATGTCGGTTGTATGA+TGG 0.527459 8_3:+59678312 Msa1298830:CDS
ATGAATCTTTAGGTATGGGT+GGG 0.527854 8_3:+59678070 Msa1298830:CDS
GATTGAAACATGTCCCAATC+TGG 0.528396 8_3:-59679678 None:intergenic
GCTTCTCGTGCAATCTCTGG+TGG 0.532644 8_3:+59679729 Msa1298830:CDS
GAGAGGTCATGGAGAAATGA+GGG 0.532941 8_3:+59680747 Msa1298830:CDS
GTTTCCATCGGCCACCTCAC+CGG 0.534807 8_3:+59677406 Msa1298830:CDS
GTCATGCACCTCTCAGCCCC+AGG 0.535544 8_3:-59678234 None:intergenic
GATGAATCTTTAGGTATGGG+TGG 0.539180 8_3:+59678069 Msa1298830:CDS
GGTGGTTAAGCTTGGCGCCA+TGG 0.539230 8_3:-59677167 None:intergenic
GTGGACATTTGCATGGAAAG+TGG 0.540244 8_3:+59677631 Msa1298830:CDS
GCCTTTGAAATGTTTCCTCA+CGG 0.541118 8_3:-59679174 None:intergenic
ATATATGTTAGCGATTCTGT+TGG 0.541338 8_3:+59679756 Msa1298830:CDS
ATTTAGGGGTTTATTAAAGG+AGG 0.543379 8_3:+59678116 Msa1298830:CDS
TGGTAATGCTCCATGTCCCT+TGG 0.545376 8_3:+59680842 Msa1298830:CDS
GGTACAGAAACCATTTCACT+TGG 0.545490 8_3:+59679245 Msa1298830:CDS
TACCGTTTGGATCCCCAGCT+GGG 0.547039 8_3:-59679584 None:intergenic
TTCAGAGCTTGTCTTCAACC+AGG 0.549536 8_3:+59677592 Msa1298830:CDS
GATTTAAAGGAGGAATTTAG+GGG 0.551825 8_3:+59678102 Msa1298830:CDS
TACCTTAAGGTGGACCCTCA+AGG 0.552311 8_3:+59677841 Msa1298830:CDS
TTAAGGGTTTAGTAGAAGGT+GGG 0.552737 8_3:+59677878 Msa1298830:CDS
ACCAGAGATTGCACGAGAAG+CGG 0.555134 8_3:-59679727 None:intergenic
AAAGACATTGAATGGAGCAA+AGG 0.557425 8_3:+59680457 Msa1298830:CDS
AGCATGTTAACCAATCCGAT+TGG 0.559198 8_3:-59680658 None:intergenic
AACGGTACCTATTGGTTGCA+AGG 0.559469 8_3:+59679600 Msa1298830:CDS
GCCGACGAAGCAACCAGCAA+CGG 0.560269 8_3:-59677350 None:intergenic
TCTTGAGTAACTTGAAGTTG+TGG 0.560897 8_3:-59679782 None:intergenic
TTGTAATCATTGATGATGGT+TGG 0.565983 8_3:+59677914 Msa1298830:CDS
GACCCAGCTGGGGATCCAAA+CGG 0.566099 8_3:+59679582 Msa1298830:CDS
TTGGGTCTATTCAATTGCCA+AGG 0.572201 8_3:+59680355 Msa1298830:CDS
AGGAAACATTTCAAAGGCAA+TGG 0.572988 8_3:+59679179 Msa1298830:CDS
GGACTTGAGTGAGGATTGGG+TGG 0.573160 8_3:-59677267 None:intergenic
GCCCCAGGTGACAATTTCGC+CGG 0.575474 8_3:-59678219 None:intergenic
GACCCTCAAGGAGTGAAAGA+AGG 0.577697 8_3:+59677853 Msa1298830:CDS
AATGACAGTTTCTCCTGTGA+TGG 0.579467 8_3:+59680606 Msa1298830:CDS
TCAATGATTACAAAACTTGG+AGG 0.580200 8_3:-59677904 None:intergenic
TGTTTGATGGGACTTGAGTG+AGG 0.584642 8_3:-59677276 None:intergenic
ATTTGATTATGATGATAGCA+TGG 0.586434 8_3:+59680822 Msa1298830:CDS
TAACAACGTGGACATTTGCA+TGG 0.587528 8_3:+59677624 Msa1298830:CDS
TGAAGGGATGCCGGAGTCGG+TGG 0.587896 8_3:+59678191 Msa1298830:CDS
CTGAAAGAACCTTCGATGAG+TGG 0.589033 8_3:-59677574 None:intergenic
GATTCCGGTGAGGTGGCCGA+TGG 0.591730 8_3:-59677410 None:intergenic
TTGGTTAACATGCTCAACTC+CGG 0.595231 8_3:+59680667 Msa1298830:CDS
GTTTGTGAGGGATTTAAAGG+AGG 0.595260 8_3:+59678092 Msa1298830:CDS
GCTTGCAAAAGCGTACTACA+AGG 0.596101 8_3:+59679139 Msa1298830:CDS
TTGGTGCACGGACCCAGCTG+GGG 0.596662 8_3:+59679572 Msa1298830:CDS
TTCGTCGGCTTCAATGCCGA+CGG 0.596754 8_3:+59677364 Msa1298830:CDS
TATTTAGATTCAAACTATGG+TGG 0.597461 8_3:+59677446 Msa1298830:CDS
GTGCATGACGGATTTGGCGG+TGG 0.598460 8_3:+59678248 Msa1298830:CDS
TGTTGAAGGGATGCCGGAGT+CGG 0.599281 8_3:+59678188 Msa1298830:CDS
ATTGAGAACCTTGCAGAACA+AGG 0.602231 8_3:-59680865 None:intergenic
CTGGTGAACAAATGTTGGGA+AGG 0.602925 8_3:+59678007 Msa1298830:CDS
GGATTGGGTGGTTATTGGCG+AGG 0.609307 8_3:-59677255 None:intergenic
TGGACATTTGCATGGAAAGT+GGG 0.609974 8_3:+59677632 Msa1298830:CDS
CTGGTGAGAATTGGGGTGAG+AGG 0.613729 8_3:+59680730 Msa1298830:CDS
GGTCTATTCAATTGCCAAGG+AGG 0.616757 8_3:+59680358 Msa1298830:CDS
TATTCAATTGCCAAGGAGGA+GGG 0.618004 8_3:+59680362 Msa1298830:CDS
GAGGTGCATGACGGATTTGG+CGG 0.618063 8_3:+59678245 Msa1298830:CDS
AGCCGACACATAGTTTCCAT+CGG 0.619026 8_3:+59677394 Msa1298830:CDS
GCATATAACAGCTTATGGAT+GGG 0.620751 8_3:+59679642 Msa1298830:CDS
TCCGTGAGGAAACATTTCAA+AGG 0.621108 8_3:+59679173 Msa1298830:CDS
TCCGGCGAAATTGTCACCTG+GGG 0.621421 8_3:+59678218 Msa1298830:CDS
GTTAACATGCTCAACTCCGG+AGG 0.626212 8_3:+59680670 Msa1298830:CDS
GGATTAGACCTAATGTTGAA+GGG 0.633952 8_3:+59678175 Msa1298830:CDS
TGGATTGGTGAAGCCAGAAG+AGG 0.637487 8_3:+59678293 Msa1298830:CDS
GTGAAATGGTTTCTGTACCA+AGG 0.638102 8_3:-59679241 None:intergenic
AGTGGTAAAAGAAGAACGTA+GGG 0.639687 8_3:-59677556 None:intergenic
GGTTCTAGAGATGCTGTCAG+AGG 0.645061 8_3:+59679097 Msa1298830:intron
TCAATTGCCAAGGAGGAGGG+TGG 0.646161 8_3:+59680365 Msa1298830:CDS
AACCTTGCAGAACAAGGCCA+AGG 0.647712 8_3:-59680859 None:intergenic
ACCTTGCAGAACAAGGCCAA+GGG 0.647834 8_3:-59680858 None:intergenic
TGAATCTGATTCCGGTGAGG+TGG 0.648526 8_3:-59677417 None:intergenic
AATTGTCACCTGGGGCTGAG+AGG 0.650965 8_3:+59678226 Msa1298830:CDS
GGTTGATTCAACAACACGTG+TGG 0.655311 8_3:-59677656 None:intergenic
ATATAGTTGATAAATTTGGA+TGG 0.656069 8_3:+59677800 Msa1298830:CDS
ACTCACTGGACAGGAACCAA+AGG 0.659950 8_3:+59677472 Msa1298830:CDS
TAAATTTGGATGGTGTACAT+GGG 0.660395 8_3:+59677810 Msa1298830:CDS
TGGGGCTGAGAGGTGCATGA+CGG 0.661779 8_3:+59678236 Msa1298830:CDS
TGAAGCCAGAAGAGGCATGT+CGG 0.661984 8_3:+59678301 Msa1298830:CDS
GAGTGGTAAAAGAAGAACGT+AGG 0.662123 8_3:-59677557 None:intergenic
GAAGTTTGAATGTTCCTAGG+TGG 0.665970 8_3:-59677756 None:intergenic
GACGAAGCAACCAGCAACGG+TGG 0.666404 8_3:-59677347 None:intergenic
TATTAAAGGAGGTTTATGTG+TGG 0.666878 8_3:+59678127 Msa1298830:CDS
GATAATACTCGAAAACGACA+CGG 0.689404 8_3:+59677522 Msa1298830:CDS
CACAGAGTGCGAAAACTCAG+AGG 0.690041 8_3:-59680416 None:intergenic
GGCCGATGGAAACTATGTGT+CGG 0.709465 8_3:-59677396 None:intergenic
AAGGTTGTTAGAGACCACCT+AGG 0.723577 8_3:+59677742 Msa1298830:CDS
ATGCTGTCAGAGGAATATGG+TGG 0.725576 8_3:+59679107 Msa1298830:CDS
TTGGTTGCAAGGATGTCACA+TGG 0.743481 8_3:+59679611 Msa1298830:CDS
TGGTGAATCTGATTCCGGTG+AGG 0.745506 8_3:-59677420 None:intergenic
AGGCACTAACTGAATCCGTG+AGG 0.754937 8_3:+59679159 Msa1298830:CDS
AGGACAAAACAATAACAACG+TGG 0.807452 8_3:+59677612 Msa1298830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTAAAATTTAATATA+AGG + chr8_3:59678524-59678543 Msa1298830:intron 0.0%
!!! ATATTTAAAATTTAATATAA+GGG + chr8_3:59678525-59678544 Msa1298830:intron 0.0%
!! TGAAGAAAATAAAAAATTTA+AGG + chr8_3:59678041-59678060 Msa1298830:CDS 10.0%
!! AAAAATATATGTTATGATTT+AGG - chr8_3:59678426-59678445 None:intergenic 10.0%
!!! AAATCATAACATATATTTTT+TGG + chr8_3:59678426-59678445 Msa1298830:intron 10.0%
!! AAATTTAATATATAAGGATT+AGG + chr8_3:59678560-59678579 Msa1298830:intron 10.0%
!! AAATTTAATTGGTATATATT+TGG - chr8_3:59678645-59678664 None:intergenic 10.0%
!!! AATGTATAAACATATTTTGA+AGG - chr8_3:59677680-59677699 None:intergenic 15.0%
!! CATATGCAAAAATATAATTT+AGG + chr8_3:59678487-59678506 Msa1298830:intron 15.0%
!! CATCACATAAAAAATTTAAT+TGG - chr8_3:59678656-59678675 None:intergenic 15.0%
!! TAAATTTAACATATACAAGT+TGG + chr8_3:59678988-59679007 Msa1298830:intron 15.0%
!!! TTTCTAGTATTAAAAAATCA+GGG - chr8_3:59679017-59679036 None:intergenic 15.0%
!!! ATTTCTAGTATTAAAAAATC+AGG - chr8_3:59679018-59679037 None:intergenic 15.0%
!!! ATATAGTTGATAAATTTGGA+TGG + chr8_3:59677800-59677819 Msa1298830:CDS 20.0%
!!! TTTTGCATATGTTATGATAT+AGG - chr8_3:59678478-59678497 None:intergenic 20.0%
!! ATGCAAAAATATAATTTAGG+CGG + chr8_3:59678490-59678509 Msa1298830:intron 20.0%
!!! GATGAAAGTATTTTTTATCT+GGG + chr8_3:59678694-59678713 Msa1298830:intron 20.0%
!! AAAAAAATACAACTTACTGT+TGG - chr8_3:59678936-59678955 None:intergenic 20.0%
!!! TGTATTTTTTTAGCAATTAG+AGG + chr8_3:59678945-59678964 Msa1298830:intron 20.0%
!!! GTATTTTTTTAGCAATTAGA+GGG + chr8_3:59678946-59678965 Msa1298830:intron 20.0%
!!! AAAAATAGAGTATTAACTTC+TGG - chr8_3:59679064-59679083 None:intergenic 20.0%
!!! TATCATAAAATGATTTTTGC+AGG + chr8_3:59679540-59679559 Msa1298830:intron 20.0%
!!! AAATTTTATACAACCAGATT+GGG + chr8_3:59679665-59679684 Msa1298830:CDS 20.0%
!! AATTTGAAGGATTGAATTAA+CGG - chr8_3:59679955-59679974 None:intergenic 20.0%
!!! TTACTATAGTGATATTTTGA+TGG + chr8_3:59680073-59680092 Msa1298830:intron 20.0%
!!! CAATTTTCATATTGTTACTT+CGG + chr8_3:59680266-59680285 Msa1298830:intron 20.0%
!!! GCAAATTGAATTGAATTTTT+CGG - chr8_3:59680637-59680656 None:intergenic 20.0%
!!! GGAAAGATTTGTTTCTTTTA+CGG - chr8_3:59677191-59677210 None:intergenic 25.0%
!!! TGTTGAGTTTTCTAGTTTTA+TGG - chr8_3:59677233-59677252 None:intergenic 25.0%
! TAGTTTGAATCTAAATATGC+TGG - chr8_3:59677443-59677462 None:intergenic 25.0%
! GCATATTTAGATTCAAACTA+TGG + chr8_3:59677443-59677462 Msa1298830:CDS 25.0%
! TATTTAGATTCAAACTATGG+TGG + chr8_3:59677446-59677465 Msa1298830:CDS 25.0%
! GCTTCGTTCATTAAAATATA+AGG - chr8_3:59677718-59677737 None:intergenic 25.0%
! CCAAATTTATCAACTATATC+AGG - chr8_3:59677799-59677818 None:intergenic 25.0%
!!! CCTGATATAGTTGATAAATT+TGG + chr8_3:59677796-59677815 Msa1298830:CDS 25.0%
! TCATCAATGATTACAAAACT+TGG - chr8_3:59677910-59677929 None:intergenic 25.0%
!!! AGTTTTGTAATCATTGATGA+TGG + chr8_3:59677910-59677929 Msa1298830:CDS 25.0%
!!! GATGATGAAGATTTTTTGAA+CGG + chr8_3:59677952-59677971 Msa1298830:CDS 25.0%
! TATGATGAATCTTTAGGTAT+GGG + chr8_3:59678066-59678085 Msa1298830:CDS 25.0%
! GTTATGATTTAGGCAAAATA+TGG - chr8_3:59678416-59678435 None:intergenic 25.0%
! AATATATAAGGATTAGGACT+AGG + chr8_3:59678566-59678585 Msa1298830:intron 25.0%
! GATGTAAATTATTCTTGACA+AGG + chr8_3:59678672-59678691 Msa1298830:intron 25.0%
!!! GGATGAAAGTATTTTTTATC+TGG + chr8_3:59678693-59678712 Msa1298830:intron 25.0%
!!! TTAACGGATTAAAAGTTGAT+TGG + chr8_3:59678838-59678857 Msa1298830:intron 25.0%
!! GAAATTTTATACAACCAGAT+TGG + chr8_3:59679664-59679683 Msa1298830:CDS 25.0%
!!! TTGCTATTTCGTAAATTTGA+AGG - chr8_3:59679968-59679987 None:intergenic 25.0%
!!! CATTTCTTTTATTGATTCGA+TGG + chr8_3:59680046-59680065 Msa1298830:intron 25.0%
! TACATGTTTCAAAGATTAAG+AGG - chr8_3:59680222-59680241 None:intergenic 25.0%
! ATTTGATTATGATGATAGCA+TGG + chr8_3:59680822-59680841 Msa1298830:CDS 25.0%
!! AAGATTTGTTTCTTTTACGG+TGG - chr8_3:59677188-59677207 None:intergenic 30.0%
!!! GAGTTTTCTAGTTTTATGGT+GGG - chr8_3:59677229-59677248 None:intergenic 30.0%
!!! TGAGTTTTCTAGTTTTATGG+TGG - chr8_3:59677230-59677249 None:intergenic 30.0%
! GAAGAATTTTCATGTTTGTG+AGG - chr8_3:59677319-59677338 None:intergenic 30.0%
TTTAATGAACGAAGCGATTA+AGG + chr8_3:59677723-59677742 Msa1298830:CDS 30.0%
ATAAATTTGGATGGTGTACA+TGG + chr8_3:59677809-59677828 Msa1298830:CDS 30.0%
TAAATTTGGATGGTGTACAT+GGG + chr8_3:59677810-59677829 Msa1298830:CDS 30.0%
TCAATGATTACAAAACTTGG+AGG - chr8_3:59677907-59677926 None:intergenic 30.0%
!! TTGTAATCATTGATGATGGT+TGG + chr8_3:59677914-59677933 Msa1298830:CDS 30.0%
AGTTTGAATTGTTCTATACC+TGG + chr8_3:59677988-59678007 Msa1298830:CDS 30.0%
! AAGGAGTATGATGAATCTTT+AGG + chr8_3:59678060-59678079 Msa1298830:CDS 30.0%
GTATGATGAATCTTTAGGTA+TGG + chr8_3:59678065-59678084 Msa1298830:CDS 30.0%
GGATTTAAAGGAGGAATTTA+GGG + chr8_3:59678101-59678120 Msa1298830:CDS 30.0%
GATTTAAAGGAGGAATTTAG+GGG + chr8_3:59678102-59678121 Msa1298830:CDS 30.0%
GGAATTTAGGGGTTTATTAA+AGG + chr8_3:59678113-59678132 Msa1298830:CDS 30.0%
ATTTAGGGGTTTATTAAAGG+AGG + chr8_3:59678116-59678135 Msa1298830:CDS 30.0%
TATTAAAGGAGGTTTATGTG+TGG + chr8_3:59678127-59678146 Msa1298830:CDS 30.0%
! CATTCTCATTTGAAATCTGT+TGG + chr8_3:59678339-59678358 Msa1298830:CDS 30.0%
! TTGAAATCTGTTGGTATTGA+TGG + chr8_3:59678348-59678367 Msa1298830:CDS 30.0%
GGACTTCTCAAATTGATTAA+CGG + chr8_3:59678822-59678841 Msa1298830:intron 30.0%
!! AACTACCGTTAGCTTTAAAA+CGG - chr8_3:59678898-59678917 None:intergenic 30.0%
!!! CTATTTTTGTTGCATATGAC+AGG + chr8_3:59679076-59679095 Msa1298830:intron 30.0%
!! TTTACCATATCGATTTCAAG+TGG - chr8_3:59679309-59679328 None:intergenic 30.0%
! GTTACAAAGGTTAAGGTTTT+TGG - chr8_3:59679346-59679365 None:intergenic 30.0%
CACAAACACATATCAAACAT+CGG - chr8_3:59679395-59679414 None:intergenic 30.0%
! TTTTTGCAGGTGATGATTTT+TGG + chr8_3:59679553-59679572 Msa1298830:intron 30.0%
ATTGTGCATATAACAGCTTA+TGG + chr8_3:59679637-59679656 Msa1298830:CDS 30.0%
ACAGAATCGCTAACATATAT+CGG - chr8_3:59679756-59679775 None:intergenic 30.0%
ATATATGTTAGCGATTCTGT+TGG + chr8_3:59679756-59679775 Msa1298830:CDS 30.0%
ACAAATAAAGAGTCTCTTGT+TGG - chr8_3:59679858-59679877 None:intergenic 30.0%
!! TTGTTTTGCCATCATGTAAA+GGG - chr8_3:59679884-59679903 None:intergenic 30.0%
!! ATTGTTTTGCCATCATGTAA+AGG - chr8_3:59679885-59679904 None:intergenic 30.0%
GCAAAACAATGCTCAAAATT+TGG + chr8_3:59679895-59679914 Msa1298830:intron 30.0%
AAGGATTGAATTAACGGAAT+AGG - chr8_3:59679949-59679968 None:intergenic 30.0%
!! AAGAGACTAAATTGATTCGA+TGG + chr8_3:59680127-59680146 Msa1298830:intron 30.0%
CTTAAGTCCTCAAAATTCTA+AGG - chr8_3:59680189-59680208 None:intergenic 30.0%
!! ATAACAGTATAGTGGAGTTT+TGG + chr8_3:59680336-59680355 Msa1298830:intron 30.0%
!! TAACAGTATAGTGGAGTTTT+GGG + chr8_3:59680337-59680356 Msa1298830:intron 30.0%
!! TTTTGTTTCTTCTAGTCACA+GGG - chr8_3:59680393-59680412 None:intergenic 30.0%
AAAAACCCAATTTGCATGAA+AGG + chr8_3:59680481-59680500 Msa1298830:CDS 30.0%
! TCAATTCAATTTGCTCCAAT+CGG + chr8_3:59680643-59680662 Msa1298830:CDS 30.0%
GTTTGATGAAGAGAAAAATC+TGG + chr8_3:59680711-59680730 Msa1298830:CDS 30.0%
AGAAAAATCTGGTGAGAATT+GGG + chr8_3:59680722-59680741 Msa1298830:CDS 30.0%
CCATCAATCATACAACTTAT+CGG - chr8_3:59680790-59680809 None:intergenic 30.0%
!!! TTCTAGTTTTATGGTGGGAT+GGG - chr8_3:59677224-59677243 None:intergenic 35.0%
!!! TTTCTAGTTTTATGGTGGGA+TGG - chr8_3:59677225-59677244 None:intergenic 35.0%
GAGTGATGGTTATGTTTGAT+GGG - chr8_3:59677291-59677310 None:intergenic 35.0%
! GAATTTTCATGTTTGTGAGG+TGG - chr8_3:59677316-59677335 None:intergenic 35.0%
! ATTTTCTATGTCACTGCCTT+TGG - chr8_3:59677491-59677510 None:intergenic 35.0%
GATAATACTCGAAAACGACA+CGG + chr8_3:59677522-59677541 Msa1298830:CDS 35.0%
AGTGGTAAAAGAAGAACGTA+GGG - chr8_3:59677559-59677578 None:intergenic 35.0%
!! ACGTTGTTATTGTTTTGTCC+TGG - chr8_3:59677613-59677632 None:intergenic 35.0%
AGGACAAAACAATAACAACG+TGG + chr8_3:59677612-59677631 Msa1298830:CDS 35.0%
CAAGAAGTTTGAATGTTCCT+AGG - chr8_3:59677762-59677781 None:intergenic 35.0%
! ATGGGATGCATTTTACCTTA+AGG + chr8_3:59677828-59677847 Msa1298830:CDS 35.0%
TTAAGGGTTTAGTAGAAGGT+GGG + chr8_3:59677878-59677897 Msa1298830:CDS 35.0%
!!! GATGAAGATTTTTTGAACGG+TGG + chr8_3:59677955-59677974 Msa1298830:CDS 35.0%
TATACCTGGTGAACAAATGT+TGG + chr8_3:59678002-59678021 Msa1298830:CDS 35.0%
ATACCTGGTGAACAAATGTT+GGG + chr8_3:59678003-59678022 Msa1298830:CDS 35.0%
ATGAATCTTTAGGTATGGGT+GGG + chr8_3:59678070-59678089 Msa1298830:CDS 35.0%
GGGATTTAAAGGAGGAATTT+AGG + chr8_3:59678100-59678119 Msa1298830:CDS 35.0%
GGATTAGACCTAATGTTGAA+GGG + chr8_3:59678175-59678194 Msa1298830:CDS 35.0%
!! AAGATAATGGAGATTGGAGT+TGG + chr8_3:59678273-59678292 Msa1298830:CDS 35.0%
ATCTCATGCACTTTGAATTG+AGG + chr8_3:59678767-59678786 Msa1298830:intron 35.0%
TGAATTGAGGAAAATGCATC+CGG + chr8_3:59678780-59678799 Msa1298830:intron 35.0%
TCTAACAGTATTAACACCAC+CGG - chr8_3:59678802-59678821 None:intergenic 35.0%
! CGGATTAAAAGTTGATTGGA+AGG + chr8_3:59678842-59678861 Msa1298830:intron 35.0%
!!! AACCACCGTTTTAAAGCTAA+CGG + chr8_3:59678890-59678909 Msa1298830:intron 35.0%
AGGAAACATTTCAAAGGCAA+TGG + chr8_3:59679179-59679198 Msa1298830:CDS 35.0%
ACAACCACTTGAAATCGATA+TGG + chr8_3:59679302-59679321 Msa1298830:intron 35.0%
! ACATCTTCCATTAGAAGTGT+GGG - chr8_3:59679370-59679389 None:intergenic 35.0%
!! TATGAAGTACTGACATGACA+CGG - chr8_3:59679483-59679502 None:intergenic 35.0%
TGCATATAACAGCTTATGGA+TGG + chr8_3:59679641-59679660 Msa1298830:CDS 35.0%
GCATATAACAGCTTATGGAT+GGG + chr8_3:59679642-59679661 Msa1298830:CDS 35.0%
TCTTGAGTAACTTGAAGTTG+TGG - chr8_3:59679785-59679804 None:intergenic 35.0%
TTTGTAGACCCTTTACATGA+TGG + chr8_3:59679873-59679892 Msa1298830:intron 35.0%
! TCTCGATCCTTAGAATTTTG+AGG + chr8_3:59680179-59680198 Msa1298830:intron 35.0%
TTGAAAAGACACCTAATCTG+AGG - chr8_3:59680249-59680268 None:intergenic 35.0%
! TGCTGCTTATAACAGTATAG+TGG + chr8_3:59680328-59680347 Msa1298830:intron 35.0%
!! CTTTTGTTTCTTCTAGTCAC+AGG - chr8_3:59680394-59680413 None:intergenic 35.0%
CAAGTCCTAAAGACATTGAA+TGG + chr8_3:59680449-59680468 Msa1298830:CDS 35.0%
TTGCTCCATTCAATGTCTTT+AGG - chr8_3:59680457-59680476 None:intergenic 35.0%
AAAGACATTGAATGGAGCAA+AGG + chr8_3:59680457-59680476 Msa1298830:CDS 35.0%
AAGACATTGAATGGAGCAAA+GGG + chr8_3:59680458-59680477 Msa1298830:CDS 35.0%
CAACACCTTTCATGCAAATT+GGG - chr8_3:59680489-59680508 None:intergenic 35.0%
TCAACACCTTTCATGCAAAT+TGG - chr8_3:59680490-59680509 None:intergenic 35.0%
GTCATTAGCTCGAAACTAAA+AGG - chr8_3:59680592-59680611 None:intergenic 35.0%
CAATGACATAATTGAACCTC+CGG - chr8_3:59680689-59680708 None:intergenic 35.0%
GAGAAAAATCTGGTGAGAAT+TGG + chr8_3:59680721-59680740 Msa1298830:CDS 35.0%
GAAAAATCTGGTGAGAATTG+GGG + chr8_3:59680723-59680742 Msa1298830:CDS 35.0%
CCGATAAGTTGTATGATTGA+TGG + chr8_3:59680787-59680806 Msa1298830:CDS 35.0%
! TCTTTTACGGTGGTTAAGCT+TGG - chr8_3:59677178-59677197 None:intergenic 40.0%
!! TTTTATGGTGGGATGGGAAT+TGG - chr8_3:59677218-59677237 None:intergenic 40.0%
GGAGTGATGGTTATGTTTGA+TGG - chr8_3:59677292-59677311 None:intergenic 40.0%
! TTTTCATGTTTGTGAGGTGG+TGG - chr8_3:59677313-59677332 None:intergenic 40.0%
TATGCTGGTGAATCTGATTC+CGG - chr8_3:59677428-59677447 None:intergenic 40.0%
GAGTGGTAAAAGAAGAACGT+AGG - chr8_3:59677560-59677579 None:intergenic 40.0%
! CTTCTTTTACCACTCATCGA+AGG + chr8_3:59677565-59677584 Msa1298830:CDS 40.0%
TAACAACGTGGACATTTGCA+TGG + chr8_3:59677624-59677643 Msa1298830:CDS 40.0%
TGGACATTTGCATGGAAAGT+GGG + chr8_3:59677632-59677651 Msa1298830:CDS 40.0%
GAAGTTTGAATGTTCCTAGG+TGG - chr8_3:59677759-59677778 None:intergenic 40.0%
! GGATGCATTTTACCTTAAGG+TGG + chr8_3:59677831-59677850 Msa1298830:CDS 40.0%
!! AGGAGTGAAAGAAGGTGTTA+AGG + chr8_3:59677861-59677880 Msa1298830:CDS 40.0%
!! GGAGTGAAAGAAGGTGTTAA+GGG + chr8_3:59677862-59677881 Msa1298830:CDS 40.0%
GGTGTTAAGGGTTTAGTAGA+AGG + chr8_3:59677874-59677893 Msa1298830:CDS 40.0%
GTTAAGGGTTTAGTAGAAGG+TGG + chr8_3:59677877-59677896 Msa1298830:CDS 40.0%
GATGAATCTTTAGGTATGGG+TGG + chr8_3:59678069-59678088 Msa1298830:CDS 40.0%
TGGGTTTGTGAGGGATTTAA+AGG + chr8_3:59678089-59678108 Msa1298830:CDS 40.0%
GTTTGTGAGGGATTTAAAGG+AGG + chr8_3:59678092-59678111 Msa1298830:CDS 40.0%
!! TATGTGTGGCATGCTTTTTG+TGG + chr8_3:59678141-59678160 Msa1298830:CDS 40.0%
!! ATGTGTGGCATGCTTTTTGT+GGG + chr8_3:59678142-59678161 Msa1298830:CDS 40.0%
!! GCATGCTTTTTGTGGGTATT+GGG + chr8_3:59678149-59678168 Msa1298830:CDS 40.0%
!! CATGCTTTTTGTGGGTATTG+GGG + chr8_3:59678150-59678169 Msa1298830:CDS 40.0%
GGGATTAGACCTAATGTTGA+AGG + chr8_3:59678174-59678193 Msa1298830:CDS 40.0%
!! GTGGTGAAGATAATGGAGAT+TGG + chr8_3:59678267-59678286 Msa1298830:CDS 40.0%
AATGGAGATTGGAGTTGGAT+TGG + chr8_3:59678278-59678297 Msa1298830:CDS 40.0%
AGGACTAGGCACTTGATTTA+AGG + chr8_3:59678580-59678599 Msa1298830:intron 40.0%
TGCATGAGATTGAGAGCAAA+TGG - chr8_3:59678757-59678776 None:intergenic 40.0%
! GGTGGTGTTAATACTGTTAG+AGG + chr8_3:59678801-59678820 Msa1298830:intron 40.0%
!! TACCGTTAGCTTTAAAACGG+TGG - chr8_3:59678895-59678914 None:intergenic 40.0%
! AACTTACTGTTGGTTGAGTG+CGG - chr8_3:59678926-59678945 None:intergenic 40.0%
TCCGTGAGGAAACATTTCAA+AGG + chr8_3:59679173-59679192 Msa1298830:CDS 40.0%
!! GCCTTTGAAATGTTTCCTCA+CGG - chr8_3:59679177-59679196 None:intergenic 40.0%
TGCAACGATTTCATGTTCCT+TGG + chr8_3:59679224-59679243 Msa1298830:CDS 40.0%
GTGAAATGGTTTCTGTACCA+AGG - chr8_3:59679244-59679263 None:intergenic 40.0%
GGTACAGAAACCATTTCACT+TGG + chr8_3:59679245-59679264 Msa1298830:CDS 40.0%
! TGTGGGTGTTACAAAGGTTA+AGG - chr8_3:59679353-59679372 None:intergenic 40.0%
! TAGAAGTGTGGGTGTTACAA+AGG - chr8_3:59679359-59679378 None:intergenic 40.0%
TGTAACACCCACACTTCTAA+TGG + chr8_3:59679360-59679379 Msa1298830:intron 40.0%
CACATCTTCCATTAGAAGTG+TGG - chr8_3:59679371-59679390 None:intergenic 40.0%
!!! AGGTGATGATTTTTGGTGCA+CGG + chr8_3:59679560-59679579 Msa1298830:intron 40.0%
GATTGAAACATGTCCCAATC+TGG - chr8_3:59679681-59679700 None:intergenic 40.0%
! CTTCAAGTTACTCAAGAAGC+TGG + chr8_3:59679788-59679807 Msa1298830:CDS 40.0%
ACATGTACACTCCTCAGATT+AGG + chr8_3:59680235-59680254 Msa1298830:intron 40.0%
TTGGGTCTATTCAATTGCCA+AGG + chr8_3:59680355-59680374 Msa1298830:CDS 40.0%
TATTCAATTGCCAAGGAGGA+GGG + chr8_3:59680362-59680381 Msa1298830:CDS 40.0%
AATGACAGTTTCTCCTGTGA+TGG + chr8_3:59680606-59680625 Msa1298830:CDS 40.0%
!! TTTTTCGGTATGACCATCAC+AGG - chr8_3:59680622-59680641 None:intergenic 40.0%
! TCAATTTGCTCCAATCGGAT+TGG + chr8_3:59680648-59680667 Msa1298830:CDS 40.0%
AGCATGTTAACCAATCCGAT+TGG - chr8_3:59680661-59680680 None:intergenic 40.0%
TTGGTTAACATGCTCAACTC+CGG + chr8_3:59680667-59680686 Msa1298830:CDS 40.0%
CGGAGGTTCAATTATGTCAT+TGG + chr8_3:59680687-59680706 Msa1298830:CDS 40.0%
!! CATACAACTTATCGGCTTCT+CGG - chr8_3:59680782-59680801 None:intergenic 40.0%
ATTGAGAACCTTGCAGAACA+AGG - chr8_3:59680868-59680887 None:intergenic 40.0%
TTGTTCTGCAAGGTTCTCAA+TGG + chr8_3:59680867-59680886 Msa1298830:CDS 40.0%
AGTGAGGATTGGGTGGTTAT+TGG - chr8_3:59677263-59677282 None:intergenic 45.0%
ATGGGACTTGAGTGAGGATT+GGG - chr8_3:59677273-59677292 None:intergenic 45.0%
TGTTTGATGGGACTTGAGTG+AGG - chr8_3:59677279-59677298 None:intergenic 45.0%
AGCCGACACATAGTTTCCAT+CGG + chr8_3:59677394-59677413 Msa1298830:CDS 45.0%
CTGAAAGAACCTTCGATGAG+TGG - chr8_3:59677577-59677596 None:intergenic 45.0%
TTCAGAGCTTGTCTTCAACC+AGG + chr8_3:59677592-59677611 Msa1298830:CDS 45.0%
GTGGACATTTGCATGGAAAG+TGG + chr8_3:59677631-59677650 Msa1298830:CDS 45.0%
! GGTTGATTCAACAACACGTG+TGG - chr8_3:59677659-59677678 None:intergenic 45.0%
AAGGTTGTTAGAGACCACCT+AGG + chr8_3:59677742-59677761 Msa1298830:CDS 45.0%
CACCTTCTTTCACTCCTTGA+GGG - chr8_3:59677858-59677877 None:intergenic 45.0%
ACACCTTCTTTCACTCCTTG+AGG - chr8_3:59677859-59677878 None:intergenic 45.0%
CTTCCCAACATTTGTTCACC+AGG - chr8_3:59678009-59678028 None:intergenic 45.0%
CTGGTGAACAAATGTTGGGA+AGG + chr8_3:59678007-59678026 Msa1298830:CDS 45.0%
!! GGCATGCTTTTTGTGGGTAT+TGG + chr8_3:59678148-59678167 Msa1298830:CDS 45.0%
!!! CTTTTTGTGGGTATTGGGGT+GGG + chr8_3:59678154-59678173 Msa1298830:CDS 45.0%
ACCTAATGTTGAAGGGATGC+CGG + chr8_3:59678182-59678201 Msa1298830:CDS 45.0%
TTTGGCGGTGGTGAAGATAA+TGG + chr8_3:59678260-59678279 Msa1298830:CDS 45.0%
ATTGAGGAAAATGCATCCGG+TGG + chr8_3:59678783-59678802 Msa1298830:intron 45.0%
GAGATGCTGTCAGAGGAATA+TGG + chr8_3:59679104-59679123 Msa1298830:CDS 45.0%
ATGCTGTCAGAGGAATATGG+TGG + chr8_3:59679107-59679126 Msa1298830:CDS 45.0%
! GCTTGCAAAAGCGTACTACA+AGG + chr8_3:59679139-59679158 Msa1298830:CDS 45.0%
ATCGTTGCACTGTTGCATAC+TGG - chr8_3:59679213-59679232 None:intergenic 45.0%
ACCATTTCACTTGGACGAGT+TGG + chr8_3:59679254-59679273 Msa1298830:CDS 45.0%
ACCAACTCGTCCAAGTGAAA+TGG - chr8_3:59679258-59679277 None:intergenic 45.0%
TACTGACATGACACGGACAT+GGG - chr8_3:59679476-59679495 None:intergenic 45.0%
! TGCAACCAATAGGTACCGTT+TGG - chr8_3:59679600-59679619 None:intergenic 45.0%
! AACGGTACCTATTGGTTGCA+AGG + chr8_3:59679600-59679619 Msa1298830:CDS 45.0%
GTGACATCCTTGCAACCAAT+AGG - chr8_3:59679610-59679629 None:intergenic 45.0%
TTGGTTGCAAGGATGTCACA+TGG + chr8_3:59679611-59679630 Msa1298830:CDS 45.0%
!!! ACTCAAGAAGCTGGTTTTGC+CGG + chr8_3:59679797-59679816 Msa1298830:intron 45.0%
GGTCTATTCAATTGCCAAGG+AGG + chr8_3:59680358-59680377 Msa1298830:CDS 45.0%
CTATTCAATTGCCAAGGAGG+AGG + chr8_3:59680361-59680380 Msa1298830:CDS 45.0%
TGAGAGGTCATGGAGAAATG+AGG + chr8_3:59680746-59680765 Msa1298830:CDS 45.0%
GAGAGGTCATGGAGAAATGA+GGG + chr8_3:59680747-59680766 Msa1298830:CDS 45.0%
!! TCAAAAAAATTTAATATATA+AGG + chr8_3:59678554-59678573 Msa1298830:intron 5.0%
GATGGGACTTGAGTGAGGAT+TGG - chr8_3:59677274-59677293 None:intergenic 50.0%
!! TTTGTGAGGTGGTGGAGTGA+TGG - chr8_3:59677305-59677324 None:intergenic 50.0%
TCTTCAAACACCACCGTTGC+TGG + chr8_3:59677337-59677356 Msa1298830:CDS 50.0%
!! GAAACTATGTGTCGGCTGCT+TGG - chr8_3:59677391-59677410 None:intergenic 50.0%
GGCCGATGGAAACTATGTGT+CGG - chr8_3:59677399-59677418 None:intergenic 50.0%
TGAATCTGATTCCGGTGAGG+TGG - chr8_3:59677420-59677439 None:intergenic 50.0%
TGGTGAATCTGATTCCGGTG+AGG - chr8_3:59677423-59677442 None:intergenic 50.0%
! AACTATGGTGGAGCACTCAC+TGG + chr8_3:59677458-59677477 Msa1298830:CDS 50.0%
ACTCACTGGACAGGAACCAA+AGG + chr8_3:59677472-59677491 Msa1298830:CDS 50.0%
TACCTTAAGGTGGACCCTCA+AGG + chr8_3:59677841-59677860 Msa1298830:CDS 50.0%
GACCCTCAAGGAGTGAAAGA+AGG + chr8_3:59677853-59677872 Msa1298830:CDS 50.0%
! TAGGTATGGGTGGGTTTGTG+AGG + chr8_3:59678079-59678098 Msa1298830:CDS 50.0%
! AGGTATGGGTGGGTTTGTGA+GGG + chr8_3:59678080-59678099 Msa1298830:CDS 50.0%
!!! GCTTTTTGTGGGTATTGGGG+TGG + chr8_3:59678153-59678172 Msa1298830:CDS 50.0%
TCCGGCATCCCTTCAACATT+AGG - chr8_3:59678186-59678205 None:intergenic 50.0%
TTCCGGCGAAATTGTCACCT+GGG + chr8_3:59678217-59678236 Msa1298830:CDS 50.0%
!! TGAGAGGTGCATGACGGATT+TGG + chr8_3:59678242-59678261 Msa1298830:CDS 50.0%
!! TGGATTGGTGAAGCCAGAAG+AGG + chr8_3:59678293-59678312 Msa1298830:CDS 50.0%
! TGAAGCCAGAAGAGGCATGT+CGG + chr8_3:59678301-59678320 Msa1298830:CDS 50.0%
TACAACCGACATGCCTCTTC+TGG - chr8_3:59678309-59678328 None:intergenic 50.0%
! GAGGCATGTCGGTTGTATGA+TGG + chr8_3:59678312-59678331 Msa1298830:CDS 50.0%
!! GGTTCTAGAGATGCTGTCAG+AGG + chr8_3:59679097-59679116 Msa1298830:intron 50.0%
AGGCACTAACTGAATCCGTG+AGG + chr8_3:59679159-59679178 Msa1298830:CDS 50.0%
! GTACTGACATGACACGGACA+TGG - chr8_3:59679477-59679496 None:intergenic 50.0%
GGGATCCAAACGGTACCTAT+TGG + chr8_3:59679592-59679611 Msa1298830:CDS 50.0%
ACCAGAGATTGCACGAGAAG+CGG - chr8_3:59679730-59679749 None:intergenic 50.0%
!!! AAGAAGCTGGTTTTGCCGGA+TGG + chr8_3:59679801-59679820 Msa1298830:intron 50.0%
!! TGCCGGATGGATCGATTTTG+CGG + chr8_3:59679814-59679833 Msa1298830:intron 50.0%
CACCGCAAAATCGATCCATC+CGG - chr8_3:59679819-59679838 None:intergenic 50.0%
CACAGAGTGCGAAAACTCAG+AGG - chr8_3:59680419-59680438 None:intergenic 50.0%
GTTAACATGCTCAACTCCGG+AGG + chr8_3:59680670-59680689 Msa1298830:CDS 50.0%
AGAATTGGGGTGAGAGGTCA+TGG + chr8_3:59680736-59680755 Msa1298830:CDS 50.0%
! TGGTAATGCTCCATGTCCCT+TGG + chr8_3:59680842-59680861 Msa1298830:CDS 50.0%
ACCTTGCAGAACAAGGCCAA+GGG - chr8_3:59680861-59680880 None:intergenic 50.0%
AACCTTGCAGAACAAGGCCA+AGG - chr8_3:59680862-59680881 None:intergenic 50.0%
GGTGGGATGGGAATTGGCAT+GGG - chr8_3:59677212-59677231 None:intergenic 55.0%
TGGTGGGATGGGAATTGGCA+TGG - chr8_3:59677213-59677232 None:intergenic 55.0%
GGATTGGGTGGTTATTGGCG+AGG - chr8_3:59677258-59677277 None:intergenic 55.0%
GGACTTGAGTGAGGATTGGG+TGG - chr8_3:59677270-59677289 None:intergenic 55.0%
! ACCGTTGCTGGTTGCTTCGT+CGG + chr8_3:59677349-59677368 Msa1298830:CDS 55.0%
!! TTCGTCGGCTTCAATGCCGA+CGG + chr8_3:59677364-59677383 Msa1298830:CDS 55.0%
CTCCTTGAGGGTCCACCTTA+AGG - chr8_3:59677846-59677865 None:intergenic 55.0%
TGTTGAAGGGATGCCGGAGT+CGG + chr8_3:59678188-59678207 Msa1298830:CDS 55.0%
GTTCCGGCGAAATTGTCACC+TGG + chr8_3:59678216-59678235 Msa1298830:CDS 55.0%
TCCGGCGAAATTGTCACCTG+GGG + chr8_3:59678218-59678237 Msa1298830:CDS 55.0%
AATTGTCACCTGGGGCTGAG+AGG + chr8_3:59678226-59678245 Msa1298830:CDS 55.0%
!! GAGGTGCATGACGGATTTGG+CGG + chr8_3:59678245-59678264 Msa1298830:CDS 55.0%
TACCGTTTGGATCCCCAGCT+GGG - chr8_3:59679587-59679606 None:intergenic 55.0%
GCTTCTCGTGCAATCTCTGG+TGG + chr8_3:59679729-59679748 Msa1298830:CDS 55.0%
TCAATTGCCAAGGAGGAGGG+TGG + chr8_3:59680365-59680384 Msa1298830:CDS 55.0%
CTGGTGAGAATTGGGGTGAG+AGG + chr8_3:59680730-59680749 Msa1298830:CDS 55.0%
CAGAACAAGGCCAAGGGACA+TGG - chr8_3:59680855-59680874 None:intergenic 55.0%
!! TCCCTTGGCCTTGTTCTGCA+AGG + chr8_3:59680857-59680876 Msa1298830:CDS 55.0%
GACGAAGCAACCAGCAACGG+TGG - chr8_3:59677350-59677369 None:intergenic 60.0%
GCCGACGAAGCAACCAGCAA+CGG - chr8_3:59677353-59677372 None:intergenic 60.0%
GTTTCCATCGGCCACCTCAC+CGG + chr8_3:59677406-59677425 Msa1298830:CDS 60.0%
! TGGTGGAGCACTCACTGGAC+AGG + chr8_3:59677463-59677482 Msa1298830:CDS 60.0%
GCCCCAGGTGACAATTTCGC+CGG - chr8_3:59678222-59678241 None:intergenic 60.0%
! TGGGGCTGAGAGGTGCATGA+CGG + chr8_3:59678236-59678255 Msa1298830:CDS 60.0%
!! GTGCATGACGGATTTGGCGG+TGG + chr8_3:59678248-59678267 Msa1298830:CDS 60.0%
!! TTTTGGTGCACGGACCCAGC+TGG + chr8_3:59679570-59679589 Msa1298830:CDS 60.0%
! TTTGGTGCACGGACCCAGCT+GGG + chr8_3:59679571-59679590 Msa1298830:CDS 60.0%
GACCCAGCTGGGGATCCAAA+CGG + chr8_3:59679582-59679601 Msa1298830:CDS 60.0%
GTACCGTTTGGATCCCCAGC+TGG - chr8_3:59679588-59679607 None:intergenic 60.0%
GCCGCTTCTCGTGCAATCTC+TGG + chr8_3:59679726-59679745 Msa1298830:CDS 60.0%
!! GTGTCGGCTGCTTGGTCCGT+CGG - chr8_3:59677383-59677402 None:intergenic 65.0%
GATTCCGGTGAGGTGGCCGA+TGG - chr8_3:59677413-59677432 None:intergenic 65.0%
TGAAGGGATGCCGGAGTCGG+TGG + chr8_3:59678191-59678210 Msa1298830:CDS 65.0%
GTCATGCACCTCTCAGCCCC+AGG - chr8_3:59678237-59678256 None:intergenic 65.0%
TTGGTGCACGGACCCAGCTG+GGG + chr8_3:59679572-59679591 Msa1298830:CDS 65.0%
AGGGATGCCGGAGTCGGTGG+TGG + chr8_3:59678194-59678213 Msa1298830:CDS 70.0%
! GCCGGAGTCGGTGGTGGTTC+CGG + chr8_3:59678200-59678219 Msa1298830:CDS 70.0%
!! GCCGGAACCACCACCGACTC+CGG - chr8_3:59678204-59678223 None:intergenic 70.0%
! CAGGGCACCACCCTCCTCCT+TGG - chr8_3:59680375-59680394 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 59677169 59680906 59677169 ID=Msa1298830;Name=Msa1298830
chr8_3 mRNA 59677169 59680906 59677169 ID=Msa1298830-mRNA-1;Parent=Msa1298830;Name=Msa1298830-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|737
chr8_3 exon 59677169 59678392 59677169 ID=Msa1298830-mRNA-1:exon:17285;Parent=Msa1298830-mRNA-1
chr8_3 exon 59679098 59679275 59679098 ID=Msa1298830-mRNA-1:exon:17286;Parent=Msa1298830-mRNA-1
chr8_3 exon 59679562 59679809 59679562 ID=Msa1298830-mRNA-1:exon:17287;Parent=Msa1298830-mRNA-1
chr8_3 exon 59680343 59680906 59680343 ID=Msa1298830-mRNA-1:exon:17288;Parent=Msa1298830-mRNA-1
chr8_3 CDS 59677169 59678392 59677169 ID=Msa1298830-mRNA-1:cds;Parent=Msa1298830-mRNA-1
chr8_3 CDS 59679098 59679275 59679098 ID=Msa1298830-mRNA-1:cds;Parent=Msa1298830-mRNA-1
chr8_3 CDS 59679562 59679809 59679562 ID=Msa1298830-mRNA-1:cds;Parent=Msa1298830-mRNA-1
chr8_3 CDS 59680343 59680906 59680343 ID=Msa1298830-mRNA-1:cds;Parent=Msa1298830-mRNA-1
Gene Sequence

>Msa1298830

ATGGCGCCAAGCTTAACCACCGTAAAAGAAACAAATCTTTCCCATGCCAATTCCCATCCCACCATAAAACTAGAAAACTCAACATTCCTCGCCAATAACCACCCAATCCTCACTCAAGTCCCATCAAACATAACCATCACTCCACCACCTCACAAACATGAAAATTCTTCTTCAAACACCACCGTTGCTGGTTGCTTCGTCGGCTTCAATGCCGACGGACCAAGCAGCCGACACATAGTTTCCATCGGCCACCTCACCGGAATCAGATTCACCAGCATATTTAGATTCAAACTATGGTGGAGCACTCACTGGACAGGAACCAAAGGCAGTGACATAGAAAATGAAACTCAAATGATAATACTCGAAAACGACACGGTTAAACAACGTCCCTACGTTCTTCTTTTACCACTCATCGAAGGTTCTTTCAGAGCTTGTCTTCAACCAGGACAAAACAATAACAACGTGGACATTTGCATGGAAAGTGGGTCCACACGTGTTGTTGAATCAACCTTCAAAATATGTTTATACATTCATGCAAACTTCGATCCTTATATTTTAATGAACGAAGCGATTAAGGTTGTTAGAGACCACCTAGGAACATTCAAACTTCTTGAAGAAAAAACAATACCTGATATAGTTGATAAATTTGGATGGTGTACATGGGATGCATTTTACCTTAAGGTGGACCCTCAAGGAGTGAAAGAAGGTGTTAAGGGTTTAGTAGAAGGTGGGTGTCCTCCAAGTTTTGTAATCATTGATGATGGTTGGCAAAACTTTTGTCGTGATGATGAAGATTTTTTGAACGGTGGTGATTGTTTAAGTTTGAATTGTTCTATACCTGGTGAACAAATGTTGGGAAGGTTAATAAGTTTTGAAGAAAATAAAAAATTTAAGGAGTATGATGAATCTTTAGGTATGGGTGGGTTTGTGAGGGATTTAAAGGAGGAATTTAGGGGTTTATTAAAGGAGGTTTATGTGTGGCATGCTTTTTGTGGGTATTGGGGTGGGATTAGACCTAATGTTGAAGGGATGCCGGAGTCGGTGGTGGTTCCGGCGAAATTGTCACCTGGGGCTGAGAGGTGCATGACGGATTTGGCGGTGGTGAAGATAATGGAGATTGGAGTTGGATTGGTGAAGCCAGAAGAGGCATGTCGGTTGTATGATGGACTTCATTCTCATTTGAAATCTGTTGGTATTGATGGTGTCAAGATTGATGTCACACACGTTCTAGAGATGCTGTCAGAGGAATATGGTGGTCGAGTTGAGCTTGCAAAAGCGTACTACAAGGCACTAACTGAATCCGTGAGGAAACATTTCAAAGGCAATGGTGTCATTTCCAGTATGCAACAGTGCAACGATTTCATGTTCCTTGGTACAGAAACCATTTCACTTGGACGAGTTGGTGATGATTTTTGGTGCACGGACCCAGCTGGGGATCCAAACGGTACCTATTGGTTGCAAGGATGTCACATGGTGCATTGTGCATATAACAGCTTATGGATGGGAAATTTTATACAACCAGATTGGGACATGTTTCAATCTCATCATGCTTGTTCTGAATTTCATGCCGCTTCTCGTGCAATCTCTGGTGGACCGATATATGTTAGCGATTCTGTTGGAAACCACAACTTCAAGTTACTCAAGAAGCTGTATAGTGGAGTTTTGGGTCTATTCAATTGCCAAGGAGGAGGGTGGTGCCCTGTGACTAGAAGAAACAAAAGTGCCTCTGAGTTTTCGCACTCTGTGACTTGTTTTGCAAGTCCTAAAGACATTGAATGGAGCAAAGGGAAAAACCCAATTTGCATGAAAGGTGTTGATGTATTTGCTGTCTACATGTTTAAAGATGAAAAATTGAAGCTGCTGAAGTGCACAGAGACTATAGAAGTTTCACTTGAGCCTTTTAGTTTCGAGCTAATGACAGTTTCTCCTGTGATGGTCATACCGAAAAATTCAATTCAATTTGCTCCAATCGGATTGGTTAACATGCTCAACTCCGGAGGTTCAATTATGTCATTGGAGTTTGATGAAGAGAAAAATCTGGTGAGAATTGGGGTGAGAGGTCATGGAGAAATGAGGGTGTTCGCATCCGAGAAGCCGATAAGTTGTATGATTGATGGAGAAGCTGTGAAATTTGATTATGATGATAGCATGGTAATGCTCCATGTCCCTTGGCCTTGTTCTGCAAGGTTCTCAATGGTTGAGTATTTATTCTGA

Protein sequence

>Msa1298830

MAPSLTTVKETNLSHANSHPTIKLENSTFLANNHPILTQVPSNITITPPPHKHENSSSNTTVAGCFVGFNADGPSSRHIVSIGHLTGIRFTSIFRFKLWWSTHWTGTKGSDIENETQMIILENDTVKQRPYVLLLPLIEGSFRACLQPGQNNNNVDICMESGSTRVVESTFKICLYIHANFDPYILMNEAIKVVRDHLGTFKLLEEKTIPDIVDKFGWCTWDAFYLKVDPQGVKEGVKGLVEGGCPPSFVIIDDGWQNFCRDDEDFLNGGDCLSLNCSIPGEQMLGRLISFEENKKFKEYDESLGMGGFVRDLKEEFRGLLKEVYVWHAFCGYWGGIRPNVEGMPESVVVPAKLSPGAERCMTDLAVVKIMEIGVGLVKPEEACRLYDGLHSHLKSVGIDGVKIDVTHVLEMLSEEYGGRVELAKAYYKALTESVRKHFKGNGVISSMQQCNDFMFLGTETISLGRVGDDFWCTDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSHHACSEFHAASRAISGGPIYVSDSVGNHNFKLLKKLYSGVLGLFNCQGGGWCPVTRRNKSASEFSHSVTCFASPKDIEWSKGKNPICMKGVDVFAVYMFKDEKLKLLKCTETIEVSLEPFSFELMTVSPVMVIPKNSIQFAPIGLVNMLNSGGSIMSLEFDEEKNLVRIGVRGHGEMRVFASEKPISCMIDGEAVKFDYDDSMVMLHVPWPCSARFSMVEYLF*