Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21845.t1 | XP_003610722.1 | 96.1 | 153 | 3 | 1 | 1 | 150 | 1 | 153 | 2.50E-76 | 294.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21845.t1 | O23344 | 81.1 | 106 | 20 | 0 | 45 | 150 | 49 | 154 | 1.3e-46 | 187.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21845.t1 | G7K3M7 | 96.1 | 153 | 3 | 1 | 1 | 150 | 1 | 153 | 1.8e-76 | 294.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene21845 | 0.89286 | 1.07E-74 | -1.69E-46 |
| MS.gene049173 | MS.gene21845 | 0.837031 | 6.61E-57 | -1.69E-46 |
| MS.gene049181 | MS.gene21845 | -0.816395 | 5.65E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene21845 | 0.849066 | 4.10E-60 | -1.69E-46 |
| MS.gene049222 | MS.gene21845 | 0.863078 | 3.22E-64 | -1.69E-46 |
| MS.gene049232 | MS.gene21845 | 0.87068 | 1.21E-66 | -1.69E-46 |
| MS.gene049285 | MS.gene21845 | 0.907182 | 6.68E-81 | -1.69E-46 |
| MS.gene049320 | MS.gene21845 | 0.907266 | 6.10E-81 | -1.69E-46 |
| MS.gene049600 | MS.gene21845 | 0.807396 | 5.16E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene21845 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene049627 | MS.gene21845 | 0.842556 | 2.41E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene21845 | 0.842741 | 2.15E-58 | -1.69E-46 |
| MS.gene05010 | MS.gene21845 | 0.885135 | 1.06E-71 | -1.69E-46 |
| MS.gene050163 | MS.gene21845 | 0.908119 | 2.42E-81 | -1.69E-46 |
| MS.gene050165 | MS.gene21845 | 0.904814 | 8.28E-80 | -1.69E-46 |
| MS.gene050170 | MS.gene21845 | 0.839557 | 1.48E-57 | -1.69E-46 |
| MS.gene050216 | MS.gene21845 | 0.820709 | 5.94E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene21845 | 0.860211 | 2.42E-63 | -1.69E-46 |
| MS.gene050333 | MS.gene21845 | 0.860749 | 1.66E-63 | -1.69E-46 |
| MS.gene050381 | MS.gene21845 | -0.818571 | 1.83E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene21845 | 0.852666 | 3.97E-61 | -1.69E-46 |
| MS.gene050504 | MS.gene21845 | 0.935074 | 1.50E-96 | -1.69E-46 |
| MS.gene050518 | MS.gene21845 | 0.927915 | 6.03E-92 | -1.69E-46 |
| MS.gene050577 | MS.gene21845 | 0.901465 | 2.61E-78 | -1.69E-46 |
| MS.gene050612 | MS.gene21845 | 0.933906 | 9.17E-96 | -1.69E-46 |
| MS.gene050662 | MS.gene21845 | 0.812409 | 4.30E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene21845 | 0.880952 | 3.59E-70 | -1.69E-46 |
| MS.gene050699 | MS.gene21845 | 0.896885 | 2.40E-76 | -1.69E-46 |
| MS.gene050747 | MS.gene21845 | 0.800959 | 1.13E-48 | -1.69E-46 |
| MS.gene050772 | MS.gene21845 | 0.843282 | 1.54E-58 | -1.69E-46 |
| MS.gene05080 | MS.gene21845 | 0.828701 | 7.77E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene21845 | 0.85927 | 4.65E-63 | -1.69E-46 |
| MS.gene050871 | MS.gene21845 | 0.859406 | 4.23E-63 | -1.69E-46 |
| MS.gene050876 | MS.gene21845 | 0.882791 | 7.74E-71 | -1.69E-46 |
| MS.gene05087 | MS.gene21845 | 0.825685 | 4.10E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene21845 | -0.820517 | 6.58E-53 | -1.69E-46 |
| MS.gene050904 | MS.gene21845 | 0.844781 | 6.11E-59 | -1.69E-46 |
| MS.gene050950 | MS.gene21845 | 0.800253 | 1.57E-48 | -1.69E-46 |
| MS.gene050986 | MS.gene21845 | 0.917087 | 8.14E-86 | -1.69E-46 |
| MS.gene05100 | MS.gene21845 | 0.86769 | 1.14E-65 | -1.69E-46 |
| MS.gene051127 | MS.gene21845 | -0.826748 | 2.29E-54 | -1.69E-46 |
| MS.gene05118 | MS.gene21845 | 0.801831 | 7.48E-49 | -1.69E-46 |
| MS.gene051268 | MS.gene21845 | 0.822757 | 2.00E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene21845 | 0.87838 | 2.94E-69 | -1.69E-46 |
| MS.gene051551 | MS.gene21845 | 0.888609 | 5.07E-73 | -1.69E-46 |
| MS.gene051694 | MS.gene21845 | 0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene051810 | MS.gene21845 | 0.876906 | 9.62E-69 | -1.69E-46 |
| MS.gene051949 | MS.gene21845 | 0.823533 | 1.32E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene21845 | 0.860935 | 1.46E-63 | -1.69E-46 |
| MS.gene052271 | MS.gene21845 | 0.819449 | 1.15E-52 | -1.69E-46 |
| MS.gene052482 | MS.gene21845 | 0.876916 | 9.54E-69 | -1.69E-46 |
| MS.gene052486 | MS.gene21845 | 0.875515 | 2.90E-68 | -1.69E-46 |
| MS.gene052503 | MS.gene21845 | 0.812632 | 3.85E-51 | -1.69E-46 |
| MS.gene052504 | MS.gene21845 | 0.800167 | 1.64E-48 | -1.69E-46 |
| MS.gene052506 | MS.gene21845 | 0.810889 | 9.21E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene21845 | 0.812504 | 4.10E-51 | -1.69E-46 |
| MS.gene052822 | MS.gene21845 | 0.821554 | 3.80E-53 | -1.69E-46 |
| MS.gene052823 | MS.gene21845 | 0.815965 | 7.05E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene21845 | 0.808085 | 3.68E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene21845 | 0.826912 | 2.09E-54 | -1.69E-46 |
| MS.gene052966 | MS.gene21845 | 0.829085 | 6.27E-55 | -1.69E-46 |
| MS.gene053203 | MS.gene21845 | 0.861119 | 1.28E-63 | -1.69E-46 |
| MS.gene053207 | MS.gene21845 | 0.812013 | 5.25E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene21845 | 0.870346 | 1.56E-66 | -1.69E-46 |
| MS.gene053284 | MS.gene21845 | 0.823873 | 1.10E-53 | -1.69E-46 |
| MS.gene053286 | MS.gene21845 | 0.876952 | 9.27E-69 | -1.69E-46 |
| MS.gene053420 | MS.gene21845 | -0.806903 | 6.56E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene21845 | 0.810376 | 1.19E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene21845 | 0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene053549 | MS.gene21845 | -0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene21845 | -0.810354 | 1.20E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene21845 | 0.826669 | 2.39E-54 | -1.69E-46 |
| MS.gene053626 | MS.gene21845 | 0.82421 | 9.13E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene21845 | 0.834658 | 2.64E-56 | -1.69E-46 |
| MS.gene053633 | MS.gene21845 | 0.805332 | 1.40E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene21845 | 0.810616 | 1.06E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene21845 | 0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene054374 | MS.gene21845 | 0.812792 | 3.55E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene21845 | 0.805068 | 1.60E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene21845 | 0.860525 | 1.94E-63 | -1.69E-46 |
| MS.gene054600 | MS.gene21845 | 0.851244 | 1.01E-60 | -1.69E-46 |
| MS.gene054642 | MS.gene21845 | 0.889453 | 2.39E-73 | -1.69E-46 |
| MS.gene054706 | MS.gene21845 | -0.802799 | 4.73E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene21845 | 0.887641 | 1.19E-72 | -1.69E-46 |
| MS.gene054954 | MS.gene21845 | 0.934994 | 1.70E-96 | -1.69E-46 |
| MS.gene055154 | MS.gene21845 | -0.816667 | 4.91E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene21845 | 0.908423 | 1.74E-81 | -1.69E-46 |
| MS.gene055502 | MS.gene21845 | 0.886341 | 3.72E-72 | -1.69E-46 |
| MS.gene055577 | MS.gene21845 | 0.879385 | 1.30E-69 | -1.69E-46 |
| MS.gene055634 | MS.gene21845 | 0.815371 | 9.57E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene21845 | 0.817038 | 4.06E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene21845 | 0.871615 | 5.97E-67 | -1.69E-46 |
| MS.gene055750 | MS.gene21845 | 0.859004 | 5.58E-63 | -1.69E-46 |
| MS.gene055751 | MS.gene21845 | 0.882087 | 1.40E-70 | -1.69E-46 |
| MS.gene055776 | MS.gene21845 | 0.896673 | 2.94E-76 | -1.69E-46 |
| MS.gene055849 | MS.gene21845 | 0.835537 | 1.58E-56 | -1.69E-46 |
| MS.gene05589 | MS.gene21845 | 0.856344 | 3.43E-62 | -1.69E-46 |
| MS.gene055941 | MS.gene21845 | 0.806733 | 7.13E-50 | -1.69E-46 |
| MS.gene056046 | MS.gene21845 | 0.81045 | 1.15E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene21845 | 0.81558 | 8.60E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene21845 | 0.876918 | 9.53E-69 | -1.69E-46 |
| MS.gene056409 | MS.gene21845 | 0.807177 | 5.74E-50 | -1.69E-46 |
| MS.gene056450 | MS.gene21845 | 0.816822 | 4.54E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene21845 | 0.895851 | 6.47E-76 | -1.69E-46 |
| MS.gene056510 | MS.gene21845 | 0.898249 | 6.38E-77 | -1.69E-46 |
| MS.gene056549 | MS.gene21845 | 0.81714 | 3.85E-52 | -1.69E-46 |
| MS.gene056550 | MS.gene21845 | -0.839685 | 1.37E-57 | -1.69E-46 |
| MS.gene056610 | MS.gene21845 | 0.833877 | 4.14E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene21845 | 0.89225 | 1.89E-74 | -1.69E-46 |
| MS.gene056692 | MS.gene21845 | 0.860745 | 1.67E-63 | -1.69E-46 |
| MS.gene056761 | MS.gene21845 | -0.803915 | 2.77E-49 | -1.69E-46 |
| MS.gene056898 | MS.gene21845 | 0.814824 | 1.27E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene21845 | 0.80465 | 1.95E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene21845 | 0.830879 | 2.29E-55 | -1.69E-46 |
| MS.gene05753 | MS.gene21845 | 0.804354 | 2.25E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene21845 | 0.801641 | 8.18E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene21845 | 0.85992 | 2.96E-63 | -1.69E-46 |
| MS.gene057872 | MS.gene21845 | 0.802662 | 5.04E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene21845 | 0.808827 | 2.56E-50 | -1.69E-46 |
| MS.gene057986 | MS.gene21845 | 0.8393 | 1.72E-57 | -1.69E-46 |
| MS.gene058334 | MS.gene21845 | -0.855349 | 6.70E-62 | -1.69E-46 |
| MS.gene058338 | MS.gene21845 | 0.811766 | 5.94E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene21845 | 0.833404 | 5.44E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene21845 | 0.904299 | 1.42E-79 | -1.69E-46 |
| MS.gene058544 | MS.gene21845 | 0.853435 | 2.39E-61 | -1.69E-46 |
| MS.gene058719 | MS.gene21845 | 0.83595 | 1.24E-56 | -1.69E-46 |
| MS.gene058723 | MS.gene21845 | 0.821792 | 3.34E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene21845 | 0.884878 | 1.32E-71 | -1.69E-46 |
| MS.gene058838 | MS.gene21845 | 0.821573 | 3.76E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene21845 | 0.92415 | 1.03E-89 | -1.69E-46 |
| MS.gene059023 | MS.gene21845 | 0.85472 | 1.02E-61 | -1.69E-46 |
| MS.gene059029 | MS.gene21845 | 0.813701 | 2.24E-51 | -1.69E-46 |
| MS.gene05912 | MS.gene21845 | 0.821532 | 3.84E-53 | -1.69E-46 |
| MS.gene05913 | MS.gene21845 | 0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene059367 | MS.gene21845 | 0.813331 | 2.70E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene21845 | 0.912509 | 1.80E-83 | -1.69E-46 |
| MS.gene059718 | MS.gene21845 | 0.872166 | 3.92E-67 | -1.69E-46 |
| MS.gene059756 | MS.gene21845 | 0.861685 | 8.63E-64 | -1.69E-46 |
| MS.gene059801 | MS.gene21845 | 0.805631 | 1.22E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene21845 | 0.849047 | 4.16E-60 | -1.69E-46 |
| MS.gene059865 | MS.gene21845 | 0.910397 | 1.96E-82 | -1.69E-46 |
| MS.gene06000 | MS.gene21845 | 0.84148 | 4.63E-58 | -1.69E-46 |
| MS.gene060337 | MS.gene21845 | -0.821474 | 3.96E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene21845 | 0.815138 | 1.08E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene21845 | -0.824074 | 9.83E-54 | -1.69E-46 |
| MS.gene060703 | MS.gene21845 | 0.89305 | 9.01E-75 | -1.69E-46 |
| MS.gene060728 | MS.gene21845 | 0.805935 | 1.05E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene21845 | 0.880131 | 7.06E-70 | -1.69E-46 |
| MS.gene060778 | MS.gene21845 | 0.850613 | 1.52E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene21845 | 0.907133 | 7.04E-81 | -1.69E-46 |
| MS.gene060823 | MS.gene21845 | -0.80489 | 1.74E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene21845 | 0.828799 | 7.36E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene21845 | 0.890293 | 1.12E-73 | -1.69E-46 |
| MS.gene061134 | MS.gene21845 | 0.814268 | 1.68E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene21845 | 0.878306 | 3.12E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21845 | MS.gene030942 | PPI |
| MS.gene21845 | MS.gene03847 | PPI |
| MS.gene47889 | MS.gene21845 | PPI |
| MS.gene27932 | MS.gene21845 | PPI |
| MS.gene067740 | MS.gene21845 | PPI |
| MS.gene84322 | MS.gene21845 | PPI |
| MS.gene065061 | MS.gene21845 | PPI |
| MS.gene74977 | MS.gene21845 | PPI |
| MS.gene21845 | MS.gene029328 | PPI |
| MS.gene21845 | MS.gene034453 | PPI |
| MS.gene21845 | MS.gene88235 | PPI |
| MS.gene67232 | MS.gene21845 | PPI |
| MS.gene21845 | MS.gene35417 | PPI |
| MS.gene21845 | MS.gene030944 | PPI |
| MS.gene21845 | MS.gene43037 | PPI |
| MS.gene21845 | MS.gene66754 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21845.t1 | MTR_5g006320 | 96.078 | 153 | 3 | 1 | 1 | 150 | 1 | 153 | 1.38e-105 | 298 |
| MS.gene21845.t1 | MTR_2g086510 | 37.063 | 143 | 85 | 4 | 3 | 141 | 14 | 155 | 2.05e-22 | 87.4 |
| MS.gene21845.t1 | MTR_4g053120 | 33.113 | 151 | 90 | 4 | 1 | 140 | 4 | 154 | 3.75e-22 | 86.7 |
| MS.gene21845.t1 | MTR_1g112050 | 36.719 | 128 | 75 | 4 | 15 | 140 | 30 | 153 | 3.38e-19 | 79.0 |
| MS.gene21845.t1 | MTR_1g112030 | 37.815 | 119 | 63 | 3 | 33 | 140 | 37 | 155 | 8.90e-19 | 78.2 |
| MS.gene21845.t1 | MTR_1g112030 | 37.815 | 119 | 63 | 3 | 33 | 140 | 41 | 159 | 1.03e-18 | 77.8 |
| MS.gene21845.t1 | MTR_2g006290 | 33.333 | 135 | 82 | 3 | 11 | 140 | 17 | 148 | 1.23e-18 | 77.4 |
| MS.gene21845.t1 | MTR_8g088720 | 33.333 | 138 | 83 | 3 | 10 | 142 | 15 | 148 | 3.64e-18 | 76.3 |
| MS.gene21845.t1 | MTR_4g098490 | 32.759 | 116 | 71 | 3 | 32 | 146 | 55 | 164 | 2.50e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21845.t1 | AT4G14890 | 81.132 | 106 | 20 | 0 | 45 | 150 | 49 | 154 | 8.65e-62 | 187 |
| MS.gene21845.t1 | AT2G27510 | 33.758 | 157 | 86 | 5 | 1 | 141 | 1 | 155 | 1.51e-22 | 87.8 |
| MS.gene21845.t1 | AT1G60950 | 35.556 | 135 | 77 | 6 | 13 | 141 | 18 | 148 | 1.03e-17 | 75.1 |
| MS.gene21845.t1 | AT5G10000 | 31.387 | 137 | 84 | 2 | 15 | 141 | 12 | 148 | 2.60e-16 | 71.6 |
| MS.gene21845.t1 | AT1G10960 | 32.353 | 136 | 84 | 4 | 11 | 141 | 16 | 148 | 2.46e-15 | 68.9 |
| MS.gene21845.t1 | AT1G32550 | 31.915 | 141 | 87 | 4 | 9 | 146 | 25 | 159 | 3.35e-14 | 66.6 |
Find 40 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAATGCCTTTGATAATA+TGG | 0.193692 | 5.2:+1138370 | None:intergenic |
| TCGTTCTGATTGTCATATTA+AGG | 0.194811 | 5.2:-1138198 | MS.gene21845:CDS |
| TTTGATAATATGGTTTCATC+AGG | 0.398760 | 5.2:+1138380 | None:intergenic |
| CTGAAAGCTAAATTAGTCAT+TGG | 0.415804 | 5.2:+1138133 | None:intergenic |
| TTCTGTCTGAAGAGAGTTAA+GGG | 0.429353 | 5.2:+1138554 | None:intergenic |
| AGGATAGGGGAGCTTAGTTG+TGG | 0.462415 | 5.2:+1138526 | None:intergenic |
| GAGTTAAGGGTGTAAATTGA+AGG | 0.462964 | 5.2:+1138567 | None:intergenic |
| TTATCAAAGGCATTGGACTC+TGG | 0.464183 | 5.2:-1138365 | MS.gene21845:CDS |
| CTTCTGTCTGAAGAGAGTTA+AGG | 0.465427 | 5.2:+1138553 | None:intergenic |
| GGATAGGGGAGCTTAGTTGT+GGG | 0.466042 | 5.2:+1138527 | None:intergenic |
| AACCATATTATCAAAGGCAT+TGG | 0.476989 | 5.2:-1138372 | MS.gene21845:CDS |
| TGTGTTGAGCTGAGAAGGAT+AGG | 0.480320 | 5.2:+1138511 | None:intergenic |
| ACAAGACCACGCCTTGGTTC+AGG | 0.487317 | 5.2:-1138491 | MS.gene21845:CDS |
| ACAATCAGAACGAGGGTAAG+AGG | 0.509900 | 5.2:+1138208 | None:intergenic |
| GTGCCTCATGACTGTAAGCT+TGG | 0.510320 | 5.2:-1138335 | MS.gene21845:CDS |
| AGTTAAGGGTGTAAATTGAA+GGG | 0.533055 | 5.2:+1138568 | None:intergenic |
| GTGTTGAGCTGAGAAGGATA+GGG | 0.540357 | 5.2:+1138512 | None:intergenic |
| TGTGAGGTCTTCTTATAAAG+TGG | 0.558437 | 5.2:-1138444 | MS.gene21845:CDS |
| TAAAGTGGTGATTGAGCATG+AGG | 0.567310 | 5.2:-1138429 | MS.gene21845:CDS |
| TGATGAAACCATATTATCAA+AGG | 0.569530 | 5.2:-1138378 | MS.gene21845:CDS |
| GGTCTTGTGTTGAGCTGAGA+AGG | 0.574174 | 5.2:+1138506 | None:intergenic |
| CTCAACACAAGACCACGCCT+TGG | 0.584774 | 5.2:-1138497 | MS.gene21845:CDS |
| TCATATTAAGGTTATAGCAG+AGG | 0.608535 | 5.2:-1138186 | MS.gene21845:CDS |
| TCACAGTGAAAGTGAGTGAT+GGG | 0.611048 | 5.2:+1138462 | None:intergenic |
| GTGCCACTGATAAGACGAGC+GGG | 0.615009 | 5.2:+1138296 | None:intergenic |
| GGCACAGTTGATCAGAGTGA+TGG | 0.619808 | 5.2:-1138278 | MS.gene21845:CDS |
| TGTTGAGCTGAGAAGGATAG+GGG | 0.635174 | 5.2:+1138513 | None:intergenic |
| CTCACAGTGAAAGTGAGTGA+TGG | 0.635887 | 5.2:+1138461 | None:intergenic |
| AAGCTTACAGTCATGAGGCA+CGG | 0.652590 | 5.2:+1138337 | None:intergenic |
| TGTCCCGCTCGTCTTATCAG+TGG | 0.665093 | 5.2:-1138299 | MS.gene21845:CDS |
| GATAGGGGAGCTTAGTTGTG+GGG | 0.665612 | 5.2:+1138528 | None:intergenic |
| AGTGATGATGTTGTAGAGCG+TGG | 0.677618 | 5.2:-1138248 | MS.gene21845:CDS |
| ACTCCAAGCTTACAGTCATG+AGG | 0.678735 | 5.2:+1138332 | None:intergenic |
| TAATATGACAATCAGAACGA+GGG | 0.699912 | 5.2:+1138201 | None:intergenic |
| CATCACTCACTTTCACTGTG+AGG | 0.704299 | 5.2:-1138460 | MS.gene21845:CDS |
| TGTGCCACTGATAAGACGAG+CGG | 0.724700 | 5.2:+1138295 | None:intergenic |
| AAAGTGGTGATTGAGCATGA+GGG | 0.724790 | 5.2:-1138428 | MS.gene21845:CDS |
| TGTGAACCTGAACCAAGGCG+TGG | 0.725548 | 5.2:+1138485 | None:intergenic |
| TTAATATGACAATCAGAACG+AGG | 0.733351 | 5.2:+1138200 | None:intergenic |
| ATGGGTGTGAACCTGAACCA+AGG | 0.761073 | 5.2:+1138480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATGAAACCATATTATCAA+AGG | - | chr5.2:1138342-1138361 | MS.gene21845:CDS | 25.0% |
| !! | TTTGATAATATGGTTTCATC+AGG | + | chr5.2:1138343-1138362 | None:intergenic | 25.0% |
| TAATATGACAATCAGAACGA+GGG | + | chr5.2:1138522-1138541 | None:intergenic | 30.0% | |
| TCATATTAAGGTTATAGCAG+AGG | - | chr5.2:1138534-1138553 | MS.gene21845:CDS | 30.0% | |
| TCGTTCTGATTGTCATATTA+AGG | - | chr5.2:1138522-1138541 | MS.gene21845:CDS | 30.0% | |
| TTAATATGACAATCAGAACG+AGG | + | chr5.2:1138523-1138542 | None:intergenic | 30.0% | |
| ! | AACCATATTATCAAAGGCAT+TGG | - | chr5.2:1138348-1138367 | MS.gene21845:CDS | 30.0% |
| ! | AGTTAAGGGTGTAAATTGAA+GGG | + | chr5.2:1138155-1138174 | None:intergenic | 30.0% |
| TGTGAGGTCTTCTTATAAAG+TGG | - | chr5.2:1138276-1138295 | MS.gene21845:CDS | 35.0% | |
| TTCTGTCTGAAGAGAGTTAA+GGG | + | chr5.2:1138169-1138188 | None:intergenic | 35.0% | |
| ! | GAGTTAAGGGTGTAAATTGA+AGG | + | chr5.2:1138156-1138175 | None:intergenic | 35.0% |
| ! | GTCCAATGCCTTTGATAATA+TGG | + | chr5.2:1138353-1138372 | None:intergenic | 35.0% |
| AAAGTGGTGATTGAGCATGA+GGG | - | chr5.2:1138292-1138311 | MS.gene21845:CDS | 40.0% | |
| CTTCTGTCTGAAGAGAGTTA+AGG | + | chr5.2:1138170-1138189 | None:intergenic | 40.0% | |
| TAAAGTGGTGATTGAGCATG+AGG | - | chr5.2:1138291-1138310 | MS.gene21845:CDS | 40.0% | |
| TCACAGTGAAAGTGAGTGAT+GGG | + | chr5.2:1138261-1138280 | None:intergenic | 40.0% | |
| !! | TTATCAAAGGCATTGGACTC+TGG | - | chr5.2:1138355-1138374 | MS.gene21845:CDS | 40.0% |
| AAGCTTACAGTCATGAGGCA+CGG | + | chr5.2:1138386-1138405 | None:intergenic | 45.0% | |
| ACAATCAGAACGAGGGTAAG+AGG | + | chr5.2:1138515-1138534 | None:intergenic | 45.0% | |
| ACTCCAAGCTTACAGTCATG+AGG | + | chr5.2:1138391-1138410 | None:intergenic | 45.0% | |
| CATCACTCACTTTCACTGTG+AGG | - | chr5.2:1138260-1138279 | MS.gene21845:CDS | 45.0% | |
| CTCACAGTGAAAGTGAGTGA+TGG | + | chr5.2:1138262-1138281 | None:intergenic | 45.0% | |
| GTGTTGAGCTGAGAAGGATA+GGG | + | chr5.2:1138211-1138230 | None:intergenic | 45.0% | |
| TGTGTTGAGCTGAGAAGGAT+AGG | + | chr5.2:1138212-1138231 | None:intergenic | 45.0% | |
| TGTTGAGCTGAGAAGGATAG+GGG | + | chr5.2:1138210-1138229 | None:intergenic | 45.0% | |
| ! | AGTGATGATGTTGTAGAGCG+TGG | - | chr5.2:1138472-1138491 | MS.gene21845:CDS | 45.0% |
| AGGATAGGGGAGCTTAGTTG+TGG | + | chr5.2:1138197-1138216 | None:intergenic | 50.0% | |
| ATGGGTGTGAACCTGAACCA+AGG | + | chr5.2:1138243-1138262 | None:intergenic | 50.0% | |
| GATAGGGGAGCTTAGTTGTG+GGG | + | chr5.2:1138195-1138214 | None:intergenic | 50.0% | |
| GGATAGGGGAGCTTAGTTGT+GGG | + | chr5.2:1138196-1138215 | None:intergenic | 50.0% | |
| GGCACAGTTGATCAGAGTGA+TGG | - | chr5.2:1138442-1138461 | MS.gene21845:CDS | 50.0% | |
| GTGCCTCATGACTGTAAGCT+TGG | - | chr5.2:1138385-1138404 | MS.gene21845:CDS | 50.0% | |
| ! | GGTCTTGTGTTGAGCTGAGA+AGG | + | chr5.2:1138217-1138236 | None:intergenic | 50.0% |
| ! | TGTGCCACTGATAAGACGAG+CGG | + | chr5.2:1138428-1138447 | None:intergenic | 50.0% |
| ACAAGACCACGCCTTGGTTC+AGG | - | chr5.2:1138229-1138248 | MS.gene21845:CDS | 55.0% | |
| CTCAACACAAGACCACGCCT+TGG | - | chr5.2:1138223-1138242 | MS.gene21845:CDS | 55.0% | |
| TGTCCCGCTCGTCTTATCAG+TGG | - | chr5.2:1138421-1138440 | MS.gene21845:CDS | 55.0% | |
| TGTGAACCTGAACCAAGGCG+TGG | + | chr5.2:1138238-1138257 | None:intergenic | 55.0% | |
| ! | GTGCCACTGATAAGACGAGC+GGG | + | chr5.2:1138427-1138446 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1138145 | 1138597 | 1138145 | ID=MS.gene21845 |
| chr5.2 | mRNA | 1138145 | 1138597 | 1138145 | ID=MS.gene21845.t1;Parent=MS.gene21845 |
| chr5.2 | exon | 1138145 | 1138597 | 1138145 | ID=MS.gene21845.t1.exon1;Parent=MS.gene21845.t1 |
| chr5.2 | CDS | 1138145 | 1138597 | 1138145 | ID=cds.MS.gene21845.t1;Parent=MS.gene21845.t1 |
| Gene Sequence |
| Protein sequence |
