Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47889.t1 | XP_003629958.1 | 97.3 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 2.70E-75 | 291.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47889.t1 | Q43517 | 67.1 | 143 | 47 | 0 | 6 | 148 | 2 | 144 | 3.6e-52 | 205.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47889.t1 | G7L8U4 | 97.3 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 2.0e-75 | 291.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene47889 | 0.911138 | 8.53E-83 | -1.69E-46 |
| MS.gene049173 | MS.gene47889 | 0.865925 | 4.14E-65 | -1.69E-46 |
| MS.gene049181 | MS.gene47889 | -0.807607 | 4.65E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene47889 | 0.860439 | 2.06E-63 | -1.69E-46 |
| MS.gene049222 | MS.gene47889 | 0.872886 | 2.25E-67 | -1.69E-46 |
| MS.gene049232 | MS.gene47889 | 0.889258 | 2.84E-73 | -1.69E-46 |
| MS.gene049281 | MS.gene47889 | -0.814872 | 1.24E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene47889 | 0.935698 | 5.63E-97 | -1.69E-46 |
| MS.gene049312 | MS.gene47889 | -0.809357 | 1.97E-50 | -1.69E-46 |
| MS.gene049313 | MS.gene47889 | -0.813345 | 2.68E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene47889 | 0.943155 | 2.00E-102 | -1.69E-46 |
| MS.gene04939 | MS.gene47889 | 0.815109 | 1.09E-51 | -1.69E-46 |
| MS.gene049600 | MS.gene47889 | 0.828298 | 9.72E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene47889 | 0.830824 | 2.36E-55 | -1.69E-46 |
| MS.gene049611 | MS.gene47889 | -0.805079 | 1.59E-49 | -1.69E-46 |
| MS.gene049615 | MS.gene47889 | 0.80129 | 9.66E-49 | -1.69E-46 |
| MS.gene049627 | MS.gene47889 | 0.833086 | 6.53E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene47889 | 0.83438 | 3.10E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene47889 | 0.917556 | 4.60E-86 | -1.69E-46 |
| MS.gene050163 | MS.gene47889 | 0.922879 | 5.53E-89 | -1.69E-46 |
| MS.gene050165 | MS.gene47889 | 0.918428 | 1.58E-86 | -1.69E-46 |
| MS.gene050170 | MS.gene47889 | 0.816244 | 6.11E-52 | -1.69E-46 |
| MS.gene050173 | MS.gene47889 | -0.804908 | 1.72E-49 | -1.69E-46 |
| MS.gene050216 | MS.gene47889 | 0.847576 | 1.06E-59 | -1.69E-46 |
| MS.gene050323 | MS.gene47889 | 0.85744 | 1.63E-62 | -1.69E-46 |
| MS.gene050333 | MS.gene47889 | 0.892194 | 1.99E-74 | -1.69E-46 |
| MS.gene050381 | MS.gene47889 | -0.840935 | 6.44E-58 | -1.69E-46 |
| MS.gene050444 | MS.gene47889 | 0.803375 | 3.59E-49 | -1.69E-46 |
| MS.gene050493 | MS.gene47889 | -0.809529 | 1.81E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene47889 | 0.86009 | 2.63E-63 | -1.69E-46 |
| MS.gene050504 | MS.gene47889 | 0.94607 | 9.30E-105 | -1.69E-46 |
| MS.gene050518 | MS.gene47889 | 0.918083 | 2.41E-86 | -1.69E-46 |
| MS.gene050577 | MS.gene47889 | 0.877269 | 7.20E-69 | -1.69E-46 |
| MS.gene050612 | MS.gene47889 | 0.943928 | 4.95E-103 | -1.69E-46 |
| MS.gene050662 | MS.gene47889 | 0.823575 | 1.29E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene47889 | 0.903321 | 3.92E-79 | -1.69E-46 |
| MS.gene050699 | MS.gene47889 | 0.914474 | 1.84E-84 | -1.69E-46 |
| MS.gene050747 | MS.gene47889 | 0.820663 | 6.09E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene47889 | 0.875884 | 2.17E-68 | -1.69E-46 |
| MS.gene05080 | MS.gene47889 | 0.832735 | 7.98E-56 | -1.69E-46 |
| MS.gene050832 | MS.gene47889 | -0.811139 | 8.13E-51 | -1.69E-46 |
| MS.gene050833 | MS.gene47889 | -0.814189 | 1.75E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene47889 | 0.855184 | 7.48E-62 | -1.69E-46 |
| MS.gene050871 | MS.gene47889 | 0.854112 | 1.53E-61 | -1.69E-46 |
| MS.gene050876 | MS.gene47889 | 0.85071 | 1.42E-60 | -1.69E-46 |
| MS.gene050883 | MS.gene47889 | -0.83381 | 4.31E-56 | -1.69E-46 |
| MS.gene050904 | MS.gene47889 | 0.806557 | 7.76E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene47889 | 0.81949 | 1.13E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene47889 | 0.949251 | 1.86E-107 | -1.69E-46 |
| MS.gene05100 | MS.gene47889 | 0.88753 | 1.32E-72 | -1.69E-46 |
| MS.gene051044 | MS.gene47889 | -0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene47889 | -0.801533 | 8.61E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene47889 | -0.859174 | 4.96E-63 | -1.69E-46 |
| MS.gene051138 | MS.gene47889 | -0.813634 | 2.32E-51 | -1.69E-46 |
| MS.gene05118 | MS.gene47889 | 0.800365 | 1.49E-48 | -1.69E-46 |
| MS.gene051228 | MS.gene47889 | 0.825549 | 4.41E-54 | -1.69E-46 |
| MS.gene051268 | MS.gene47889 | 0.831305 | 1.80E-55 | -1.69E-46 |
| MS.gene051317 | MS.gene47889 | 0.846484 | 2.11E-59 | -1.69E-46 |
| MS.gene051366 | MS.gene47889 | -0.800102 | 1.69E-48 | -1.69E-46 |
| MS.gene051509 | MS.gene47889 | 0.810991 | 8.75E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene47889 | 0.919578 | 3.78E-87 | -1.69E-46 |
| MS.gene051564 | MS.gene47889 | 0.825276 | 5.12E-54 | -1.69E-46 |
| MS.gene051566 | MS.gene47889 | 0.802707 | 4.94E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene47889 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene051810 | MS.gene47889 | 0.913734 | 4.36E-84 | -1.69E-46 |
| MS.gene051858 | MS.gene47889 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene47889 | -0.810518 | 1.11E-50 | -1.69E-46 |
| MS.gene051949 | MS.gene47889 | 0.850273 | 1.89E-60 | -1.69E-46 |
| MS.gene052164 | MS.gene47889 | 0.872456 | 3.14E-67 | -1.69E-46 |
| MS.gene052271 | MS.gene47889 | 0.869204 | 3.69E-66 | -1.69E-46 |
| MS.gene052379 | MS.gene47889 | 0.805232 | 1.47E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene47889 | 0.8542 | 1.44E-61 | -1.69E-46 |
| MS.gene052486 | MS.gene47889 | 0.856122 | 3.98E-62 | -1.69E-46 |
| MS.gene052503 | MS.gene47889 | 0.820847 | 5.52E-53 | -1.69E-46 |
| MS.gene052506 | MS.gene47889 | 0.824411 | 8.19E-54 | -1.69E-46 |
| MS.gene052615 | MS.gene47889 | 0.821382 | 4.16E-53 | -1.69E-46 |
| MS.gene052822 | MS.gene47889 | 0.84127 | 5.26E-58 | -1.69E-46 |
| MS.gene052823 | MS.gene47889 | 0.819279 | 1.26E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene47889 | 0.809864 | 1.53E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene47889 | 0.855731 | 5.18E-62 | -1.69E-46 |
| MS.gene052937 | MS.gene47889 | -0.807781 | 4.27E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene47889 | 0.846306 | 2.36E-59 | -1.69E-46 |
| MS.gene053009 | MS.gene47889 | 0.823631 | 1.25E-53 | -1.69E-46 |
| MS.gene053018 | MS.gene47889 | 0.802759 | 4.82E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene47889 | 0.872089 | 4.16E-67 | -1.69E-46 |
| MS.gene053207 | MS.gene47889 | 0.834099 | 3.65E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene47889 | 0.897275 | 1.65E-76 | -1.69E-46 |
| MS.gene053284 | MS.gene47889 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene47889 | 0.904293 | 1.43E-79 | -1.69E-46 |
| MS.gene053322 | MS.gene47889 | 0.802669 | 5.03E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene47889 | -0.837556 | 4.85E-57 | -1.69E-46 |
| MS.gene053436 | MS.gene47889 | 0.83553 | 1.59E-56 | -1.69E-46 |
| MS.gene053549 | MS.gene47889 | -0.80947 | 1.86E-50 | -1.69E-46 |
| MS.gene053561 | MS.gene47889 | -0.845169 | 4.80E-59 | -1.69E-46 |
| MS.gene053574 | MS.gene47889 | 0.858351 | 8.75E-63 | -1.69E-46 |
| MS.gene053626 | MS.gene47889 | 0.802923 | 4.46E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene47889 | 0.862935 | 3.56E-64 | -1.69E-46 |
| MS.gene053824 | MS.gene47889 | 0.809904 | 1.50E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene47889 | 0.823263 | 1.52E-53 | -1.69E-46 |
| MS.gene054056 | MS.gene47889 | -0.81704 | 4.05E-52 | -1.69E-46 |
| MS.gene054374 | MS.gene47889 | 0.802093 | 6.61E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene47889 | 0.801487 | 8.80E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene47889 | 0.861236 | 1.18E-63 | -1.69E-46 |
| MS.gene054600 | MS.gene47889 | 0.877657 | 5.27E-69 | -1.69E-46 |
| MS.gene054616 | MS.gene47889 | -0.823011 | 1.74E-53 | -1.69E-46 |
| MS.gene054642 | MS.gene47889 | 0.931259 | 4.92E-94 | -1.69E-46 |
| MS.gene054708 | MS.gene47889 | -0.812375 | 4.38E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene47889 | 0.868505 | 6.21E-66 | -1.69E-46 |
| MS.gene054954 | MS.gene47889 | 0.952886 | 9.17E-111 | -1.69E-46 |
| MS.gene054959 | MS.gene47889 | -0.813274 | 2.78E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene47889 | -0.851171 | 1.06E-60 | -1.69E-46 |
| MS.gene055212 | MS.gene47889 | 0.826871 | 2.14E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene47889 | 0.949853 | 5.48E-108 | -1.69E-46 |
| MS.gene055499 | MS.gene47889 | 0.817571 | 3.08E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene47889 | 0.899087 | 2.80E-77 | -1.69E-46 |
| MS.gene055577 | MS.gene47889 | 0.870313 | 1.60E-66 | -1.69E-46 |
| MS.gene055634 | MS.gene47889 | 0.837227 | 5.89E-57 | -1.69E-46 |
| MS.gene055636 | MS.gene47889 | 0.824902 | 6.27E-54 | -1.69E-46 |
| MS.gene055638 | MS.gene47889 | 0.837261 | 5.77E-57 | -1.69E-46 |
| MS.gene055647 | MS.gene47889 | 0.82901 | 6.54E-55 | -1.69E-46 |
| MS.gene055722 | MS.gene47889 | 0.859979 | 2.84E-63 | -1.69E-46 |
| MS.gene055748 | MS.gene47889 | 0.86483 | 9.17E-65 | -1.69E-46 |
| MS.gene055750 | MS.gene47889 | 0.848925 | 4.49E-60 | -1.69E-46 |
| MS.gene055751 | MS.gene47889 | 0.874352 | 7.22E-68 | -1.69E-46 |
| MS.gene055776 | MS.gene47889 | 0.922938 | 5.12E-89 | -1.69E-46 |
| MS.gene055849 | MS.gene47889 | 0.828085 | 1.09E-54 | -1.69E-46 |
| MS.gene05589 | MS.gene47889 | 0.85399 | 1.66E-61 | -1.69E-46 |
| MS.gene05592 | MS.gene47889 | 0.815968 | 7.04E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene47889 | 0.810171 | 1.32E-50 | -1.69E-46 |
| MS.gene055942 | MS.gene47889 | -0.84198 | 3.42E-58 | -1.69E-46 |
| MS.gene055956 | MS.gene47889 | -0.819556 | 1.09E-52 | -1.69E-46 |
| MS.gene056046 | MS.gene47889 | 0.817158 | 3.81E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene47889 | 0.845824 | 3.19E-59 | -1.69E-46 |
| MS.gene056374 | MS.gene47889 | 0.906338 | 1.65E-80 | -1.69E-46 |
| MS.gene056409 | MS.gene47889 | 0.808876 | 2.50E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene47889 | 0.905826 | 2.85E-80 | -1.69E-46 |
| MS.gene056510 | MS.gene47889 | 0.915029 | 9.56E-85 | -1.69E-46 |
| MS.gene056550 | MS.gene47889 | -0.834045 | 3.76E-56 | -1.69E-46 |
| MS.gene056610 | MS.gene47889 | 0.806442 | 8.21E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene47889 | 0.935118 | 1.40E-96 | -1.69E-46 |
| MS.gene056692 | MS.gene47889 | 0.850187 | 2.00E-60 | -1.69E-46 |
| MS.gene056761 | MS.gene47889 | -0.84753 | 1.09E-59 | -1.69E-46 |
| MS.gene056878 | MS.gene47889 | 0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene056898 | MS.gene47889 | 0.8232 | 1.57E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene47889 | -0.833005 | 6.83E-56 | -1.69E-46 |
| MS.gene057129 | MS.gene47889 | 0.840858 | 6.75E-58 | -1.69E-46 |
| MS.gene057246 | MS.gene47889 | 0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene47889 | 0.837964 | 3.81E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene47889 | 0.85736 | 1.72E-62 | -1.69E-46 |
| MS.gene05753 | MS.gene47889 | 0.827011 | 1.98E-54 | -1.69E-46 |
| MS.gene057831 | MS.gene47889 | 0.841729 | 3.98E-58 | -1.69E-46 |
| MS.gene057986 | MS.gene47889 | 0.817427 | 3.32E-52 | -1.69E-46 |
| MS.gene058117 | MS.gene47889 | -0.807243 | 5.56E-50 | -1.69E-46 |
| MS.gene058268 | MS.gene47889 | -0.81127 | 7.61E-51 | -1.69E-46 |
| MS.gene058269 | MS.gene47889 | -0.817098 | 3.93E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene47889 | -0.818158 | 2.27E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene47889 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene47889 | 0.817332 | 3.48E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene47889 | 0.921867 | 2.06E-88 | -1.69E-46 |
| MS.gene058544 | MS.gene47889 | 0.882802 | 7.67E-71 | -1.69E-46 |
| MS.gene058719 | MS.gene47889 | 0.825331 | 4.97E-54 | -1.69E-46 |
| MS.gene058723 | MS.gene47889 | 0.86774 | 1.09E-65 | -1.69E-46 |
| MS.gene058773 | MS.gene47889 | 0.909659 | 4.46E-82 | -1.69E-46 |
| MS.gene058838 | MS.gene47889 | 0.81892 | 1.52E-52 | -1.69E-46 |
| MS.gene058978 | MS.gene47889 | -0.816709 | 4.81E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene47889 | 0.965217 | 2.55E-124 | -1.69E-46 |
| MS.gene059023 | MS.gene47889 | 0.853378 | 2.49E-61 | -1.69E-46 |
| MS.gene059029 | MS.gene47889 | 0.843301 | 1.52E-58 | -1.69E-46 |
| MS.gene05913 | MS.gene47889 | 0.840621 | 7.79E-58 | -1.69E-46 |
| MS.gene059367 | MS.gene47889 | 0.825202 | 5.33E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene47889 | 0.936162 | 2.70E-97 | -1.69E-46 |
| MS.gene059690 | MS.gene47889 | -0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene059718 | MS.gene47889 | 0.898746 | 3.92E-77 | -1.69E-46 |
| MS.gene059756 | MS.gene47889 | 0.851548 | 8.26E-61 | -1.69E-46 |
| MS.gene059837 | MS.gene47889 | 0.830239 | 3.28E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene47889 | 0.92808 | 4.78E-92 | -1.69E-46 |
| MS.gene059916 | MS.gene47889 | -0.81693 | 4.29E-52 | -1.69E-46 |
| MS.gene059943 | MS.gene47889 | -0.804887 | 1.74E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene47889 | 0.827434 | 1.57E-54 | -1.69E-46 |
| MS.gene060337 | MS.gene47889 | -0.873354 | 1.57E-67 | -1.69E-46 |
| MS.gene060341 | MS.gene47889 | 0.844872 | 5.78E-59 | -1.69E-46 |
| MS.gene060482 | MS.gene47889 | 0.860852 | 1.55E-63 | -1.69E-46 |
| MS.gene060703 | MS.gene47889 | 0.905948 | 2.50E-80 | -1.69E-46 |
| MS.gene060728 | MS.gene47889 | 0.844039 | 9.67E-59 | -1.69E-46 |
| MS.gene060762 | MS.gene47889 | 0.877696 | 5.11E-69 | -1.69E-46 |
| MS.gene060778 | MS.gene47889 | 0.84592 | 3.00E-59 | -1.69E-46 |
| MS.gene06077 | MS.gene47889 | 0.908743 | 1.22E-81 | -1.69E-46 |
| MS.gene06092 | MS.gene47889 | 0.825331 | 4.97E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene47889 | 0.880595 | 4.82E-70 | -1.69E-46 |
| MS.gene061134 | MS.gene47889 | 0.8216 | 3.70E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene47889 | 0.884293 | 2.17E-71 | -1.69E-46 |
| MS.gene061200 | MS.gene47889 | 0.819401 | 1.18E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47889 | MS.gene024872 | PPI |
| MS.gene47889 | MS.gene84322 | PPI |
| MS.gene47889 | MS.gene21845 | PPI |
| MS.gene47889 | MS.gene000152 | PPI |
| MS.gene47889 | MS.gene034453 | PPI |
| MS.gene47889 | MS.gene067740 | PPI |
| MS.gene47889 | MS.gene92294 | PPI |
| MS.gene47889 | MS.gene029328 | PPI |
| MS.gene47889 | MS.gene88235 | PPI |
| MS.gene47889 | MS.gene35417 | PPI |
| MS.gene47889 | MS.gene43037 | PPI |
| MS.gene47889 | MS.gene66754 | PPI |
| MS.gene47889 | MS.gene03847 | PPI |
| MS.gene47889 | MS.gene065061 | PPI |
| MS.gene47889 | MS.gene74977 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47889.t1 | MTR_8g088720 | 97.297 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 7.18e-107 | 301 |
| MS.gene47889.t1 | MTR_2g006290 | 63.816 | 152 | 44 | 3 | 4 | 148 | 3 | 150 | 1.87e-63 | 191 |
| MS.gene47889.t1 | MTR_1g112030 | 56.164 | 146 | 57 | 5 | 4 | 146 | 18 | 159 | 1.57e-50 | 159 |
| MS.gene47889.t1 | MTR_1g112030 | 56.164 | 146 | 57 | 5 | 4 | 146 | 14 | 155 | 1.65e-50 | 159 |
| MS.gene47889.t1 | MTR_1g112050 | 55.782 | 147 | 62 | 3 | 1 | 146 | 9 | 153 | 6.20e-50 | 157 |
| MS.gene47889.t1 | MTR_2g086510 | 61.789 | 123 | 45 | 2 | 25 | 146 | 33 | 154 | 1.05e-49 | 156 |
| MS.gene47889.t1 | MTR_4g053120 | 57.037 | 135 | 51 | 3 | 19 | 146 | 20 | 154 | 5.77e-48 | 152 |
| MS.gene47889.t1 | MTR_5g006320 | 36.634 | 101 | 63 | 1 | 48 | 148 | 46 | 145 | 1.67e-17 | 74.7 |
| MS.gene47889.t1 | MTR_4g098490 | 36.585 | 82 | 52 | 0 | 65 | 146 | 77 | 158 | 3.29e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47889.t1 | AT1G60950 | 64.000 | 150 | 49 | 3 | 1 | 147 | 1 | 148 | 1.03e-65 | 197 |
| MS.gene47889.t1 | AT1G10960 | 61.333 | 150 | 53 | 3 | 1 | 147 | 1 | 148 | 5.54e-59 | 180 |
| MS.gene47889.t1 | AT2G27510 | 50.658 | 152 | 65 | 4 | 5 | 146 | 3 | 154 | 1.99e-44 | 143 |
| MS.gene47889.t1 | AT5G10000 | 43.182 | 132 | 71 | 3 | 19 | 147 | 18 | 148 | 1.23e-32 | 113 |
| MS.gene47889.t1 | AT4G14890 | 35.333 | 150 | 80 | 4 | 3 | 148 | 10 | 146 | 7.54e-17 | 72.8 |
| MS.gene47889.t1 | AT1G32550 | 40.244 | 82 | 49 | 0 | 65 | 146 | 72 | 153 | 1.26e-16 | 73.2 |
| MS.gene47889.t1 | AT1G32550 | 34.783 | 92 | 44 | 2 | 71 | 146 | 75 | 166 | 5.22e-12 | 60.8 |
Find 56 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGTGGGTCAGACTTTATT+TGG | 0.300570 | 4.1:+11884472 | MS.gene47889:CDS |
| CCACGTTAGGGAATGCTGTT+AGG | 0.301806 | 4.1:-11884456 | None:intergenic |
| GTAAGTTCTTTAGTTCCATC+TGG | 0.311839 | 4.1:-11884559 | None:intergenic |
| GCTGTTAGGGTTGTGTTCAT+TGG | 0.358114 | 4.1:-11884442 | None:intergenic |
| ACCACCACAGCAGCCCTATC+AGG | 0.384793 | 4.1:+11884385 | MS.gene47889:CDS |
| TGCTCACCATGGTTCCTGAT+AGG | 0.397541 | 4.1:-11884399 | None:intergenic |
| TGTGCTGGAAAAGTTGTAGA+AGG | 0.411785 | 4.1:+11884670 | MS.gene47889:CDS |
| AATAAAGTCTGACCCACGTT+AGG | 0.420347 | 4.1:-11884469 | None:intergenic |
| TCGAGAATGTACTCATTATC+CGG | 0.426007 | 4.1:-11884586 | None:intergenic |
| GATGAGCTTGATCTTGTAAC+TGG | 0.426566 | 4.1:-11884533 | None:intergenic |
| CTTCCTTACTCATGCAGGGC+TGG | 0.437541 | 4.1:+11884634 | MS.gene47889:CDS |
| GGTGCTTGCTCTTCATGTGC+TGG | 0.439901 | 4.1:+11884655 | MS.gene47889:CDS |
| TCGATCTTCCTTACTCATGC+AGG | 0.452165 | 4.1:+11884629 | MS.gene47889:CDS |
| TAAGTTCTTTAGTTCCATCT+GGG | 0.455484 | 4.1:-11884558 | None:intergenic |
| GCTCACCATGGTTCCTGATA+GGG | 0.466904 | 4.1:-11884398 | None:intergenic |
| TCCTGATAGGGCTGCTGTGG+TGG | 0.470793 | 4.1:-11884386 | None:intergenic |
| CATTGGCTGCCTCCTGATGA+AGG | 0.472321 | 4.1:-11884425 | None:intergenic |
| ACTTTATTTGGTGTGAAGGC+CGG | 0.475879 | 4.1:+11884484 | MS.gene47889:CDS |
| TGATAGGGCTGCTGTGGTGG+TGG | 0.476979 | 4.1:-11884383 | None:intergenic |
| TGGTGAGCACCTCCTTCATC+AGG | 0.483290 | 4.1:+11884413 | MS.gene47889:CDS |
| CACGTTAGGGAATGCTGTTA+GGG | 0.501804 | 4.1:-11884455 | None:intergenic |
| GCACCAGCCCTGCATGAGTA+AGG | 0.502602 | 4.1:-11884637 | None:intergenic |
| GATGATGATCAATTAAGTGC+TGG | 0.507761 | 4.1:+11884724 | MS.gene47889:CDS |
| TCAGACTTTATTTGGTGTGA+AGG | 0.514081 | 4.1:+11884480 | MS.gene47889:CDS |
| ATAAAGTCTGACCCACGTTA+GGG | 0.523812 | 4.1:-11884468 | None:intergenic |
| AAAAGTTGTAGAAGGGGAAG+TGG | 0.534366 | 4.1:+11884678 | MS.gene47889:CDS |
| ATCAAGCTCATCACCCCAGA+TGG | 0.540257 | 4.1:+11884544 | MS.gene47889:CDS |
| CTTGATCTTGTAACTGGCCA+TGG | 0.544201 | 4.1:-11884527 | None:intergenic |
| ATGATGATCAATTAAGTGCT+GGG | 0.551795 | 4.1:+11884725 | MS.gene47889:CDS |
| AAGATCGATGCCTTGTTCCT+CGG | 0.553403 | 4.1:-11884614 | None:intergenic |
| CTCGACGTAGCCGAGGAACA+AGG | 0.555180 | 4.1:+11884604 | MS.gene47889:CDS |
| CACTTAATTGATCATCATCA+AGG | 0.556300 | 4.1:-11884720 | None:intergenic |
| AACTAAAGAACTTACCTGCC+CGG | 0.559896 | 4.1:+11884567 | MS.gene47889:CDS |
| TTTGGTGTGAAGGCCGGACG+TGG | 0.560810 | 4.1:+11884490 | MS.gene47889:CDS |
| AATGTACTCATTATCCGGGC+AGG | 0.566913 | 4.1:-11884581 | None:intergenic |
| CGATCTTCCTTACTCATGCA+GGG | 0.578511 | 4.1:+11884630 | MS.gene47889:CDS |
| GTGCTGGAAAAGTTGTAGAA+GGG | 0.579438 | 4.1:+11884671 | MS.gene47889:CDS |
| GGTTCCTGATAGGGCTGCTG+TGG | 0.579627 | 4.1:-11884389 | None:intergenic |
| AGTGATACGACTTCCACGTC+CGG | 0.584494 | 4.1:-11884503 | None:intergenic |
| CGAGAATGTACTCATTATCC+GGG | 0.584894 | 4.1:-11884585 | None:intergenic |
| CCTTGTGTGTCTCAATAACA+AGG | 0.591064 | 4.1:-11884783 | None:intergenic |
| CCTAACAGCATTCCCTAACG+TGG | 0.597665 | 4.1:+11884456 | MS.gene47889:CDS |
| TGCTGGAAAAGTTGTAGAAG+GGG | 0.598351 | 4.1:+11884672 | MS.gene47889:CDS |
| TGGAAGTCGTATCACTGCCA+TGG | 0.614707 | 4.1:+11884510 | MS.gene47889:CDS |
| GTACATTCTCGACGTAGCCG+AGG | 0.630338 | 4.1:+11884597 | MS.gene47889:CDS |
| AAGTTCTTTAGTTCCATCTG+GGG | 0.632400 | 4.1:-11884557 | None:intergenic |
| AGCAGCCCTATCAGGAACCA+TGG | 0.637647 | 4.1:+11884393 | MS.gene47889:CDS |
| TGGCTGCCTCCTGATGAAGG+AGG | 0.644050 | 4.1:-11884422 | None:intergenic |
| GTGTGTCTCAATAACAAGGT+CGG | 0.646026 | 4.1:-11884779 | None:intergenic |
| CCTTGTTATTGAGACACACA+AGG | 0.649100 | 4.1:+11884783 | MS.gene47889:CDS |
| GATGAAGGAGGTGCTCACCA+TGG | 0.650251 | 4.1:-11884410 | None:intergenic |
| TCAATAACAAGGTCGGAACG+AGG | 0.657316 | 4.1:-11884772 | None:intergenic |
| CAATAACAAGGTCGGAACGA+GGG | 0.670427 | 4.1:-11884771 | None:intergenic |
| TGAGCACCTCCTTCATCAGG+AGG | 0.676610 | 4.1:+11884416 | MS.gene47889:CDS |
| CTAACAGCATTCCCTAACGT+GGG | 0.718396 | 4.1:+11884457 | MS.gene47889:CDS |
| TGTTATTGAGACACACAAGG+AGG | 0.740119 | 4.1:+11884786 | MS.gene47889:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATGATGATCAATTAAGTGCT+GGG | + | chr4.1:11884725-11884744 | MS.gene47889:CDS | 30.0% | |
| CACTTAATTGATCATCATCA+AGG | - | chr4.1:11884723-11884742 | None:intergenic | 30.0% | |
| ! | TAAGTTCTTTAGTTCCATCT+GGG | - | chr4.1:11884561-11884580 | None:intergenic | 30.0% |
| GATGATGATCAATTAAGTGC+TGG | + | chr4.1:11884724-11884743 | MS.gene47889:CDS | 35.0% | |
| TCGAGAATGTACTCATTATC+CGG | - | chr4.1:11884589-11884608 | None:intergenic | 35.0% | |
| ! | AAGTTCTTTAGTTCCATCTG+GGG | - | chr4.1:11884560-11884579 | None:intergenic | 35.0% |
| ! | GTAAGTTCTTTAGTTCCATC+TGG | - | chr4.1:11884562-11884581 | None:intergenic | 35.0% |
| !! | TCAGACTTTATTTGGTGTGA+AGG | + | chr4.1:11884480-11884499 | MS.gene47889:CDS | 35.0% |
| AAAAGTTGTAGAAGGGGAAG+TGG | + | chr4.1:11884678-11884697 | MS.gene47889:CDS | 40.0% | |
| AACGTGGGTCAGACTTTATT+TGG | + | chr4.1:11884472-11884491 | MS.gene47889:CDS | 40.0% | |
| AACTAAAGAACTTACCTGCC+CGG | + | chr4.1:11884567-11884586 | MS.gene47889:CDS | 40.0% | |
| AATAAAGTCTGACCCACGTT+AGG | - | chr4.1:11884472-11884491 | None:intergenic | 40.0% | |
| ATAAAGTCTGACCCACGTTA+GGG | - | chr4.1:11884471-11884490 | None:intergenic | 40.0% | |
| CCTTGTGTGTCTCAATAACA+AGG | - | chr4.1:11884786-11884805 | None:intergenic | 40.0% | |
| CGAGAATGTACTCATTATCC+GGG | - | chr4.1:11884588-11884607 | None:intergenic | 40.0% | |
| GATGAGCTTGATCTTGTAAC+TGG | - | chr4.1:11884536-11884555 | None:intergenic | 40.0% | |
| GTGCTGGAAAAGTTGTAGAA+GGG | + | chr4.1:11884671-11884690 | MS.gene47889:CDS | 40.0% | |
| GTGTGTCTCAATAACAAGGT+CGG | - | chr4.1:11884782-11884801 | None:intergenic | 40.0% | |
| TGCTGGAAAAGTTGTAGAAG+GGG | + | chr4.1:11884672-11884691 | MS.gene47889:CDS | 40.0% | |
| TGTGCTGGAAAAGTTGTAGA+AGG | + | chr4.1:11884670-11884689 | MS.gene47889:CDS | 40.0% | |
| TGTTATTGAGACACACAAGG+AGG | + | chr4.1:11884786-11884805 | MS.gene47889:CDS | 40.0% | |
| !! | ACTTTATTTGGTGTGAAGGC+CGG | + | chr4.1:11884484-11884503 | MS.gene47889:CDS | 40.0% |
| !! | CCTTGTTATTGAGACACACA+AGG | + | chr4.1:11884783-11884802 | MS.gene47889:CDS | 40.0% |
| AATGTACTCATTATCCGGGC+AGG | - | chr4.1:11884584-11884603 | None:intergenic | 45.0% | |
| CAATAACAAGGTCGGAACGA+GGG | - | chr4.1:11884774-11884793 | None:intergenic | 45.0% | |
| CACGTTAGGGAATGCTGTTA+GGG | - | chr4.1:11884458-11884477 | None:intergenic | 45.0% | |
| CGATCTTCCTTACTCATGCA+GGG | + | chr4.1:11884630-11884649 | MS.gene47889:CDS | 45.0% | |
| CTAACAGCATTCCCTAACGT+GGG | + | chr4.1:11884457-11884476 | MS.gene47889:CDS | 45.0% | |
| CTTGATCTTGTAACTGGCCA+TGG | - | chr4.1:11884530-11884549 | None:intergenic | 45.0% | |
| GCTGTTAGGGTTGTGTTCAT+TGG | - | chr4.1:11884445-11884464 | None:intergenic | 45.0% | |
| TCAATAACAAGGTCGGAACG+AGG | - | chr4.1:11884775-11884794 | None:intergenic | 45.0% | |
| TCGATCTTCCTTACTCATGC+AGG | + | chr4.1:11884629-11884648 | MS.gene47889:CDS | 45.0% | |
| ! | AAGATCGATGCCTTGTTCCT+CGG | - | chr4.1:11884617-11884636 | None:intergenic | 45.0% |
| AGTGATACGACTTCCACGTC+CGG | - | chr4.1:11884506-11884525 | None:intergenic | 50.0% | |
| ATCAAGCTCATCACCCCAGA+TGG | + | chr4.1:11884544-11884563 | MS.gene47889:CDS | 50.0% | |
| CCACGTTAGGGAATGCTGTT+AGG | - | chr4.1:11884459-11884478 | None:intergenic | 50.0% | |
| CCTAACAGCATTCCCTAACG+TGG | + | chr4.1:11884456-11884475 | MS.gene47889:CDS | 50.0% | |
| GCTCACCATGGTTCCTGATA+GGG | - | chr4.1:11884401-11884420 | None:intergenic | 50.0% | |
| TGCTCACCATGGTTCCTGAT+AGG | - | chr4.1:11884402-11884421 | None:intergenic | 50.0% | |
| TGGAAGTCGTATCACTGCCA+TGG | + | chr4.1:11884510-11884529 | MS.gene47889:CDS | 50.0% | |
| AGCAGCCCTATCAGGAACCA+TGG | + | chr4.1:11884393-11884412 | MS.gene47889:CDS | 55.0% | |
| CTTCCTTACTCATGCAGGGC+TGG | + | chr4.1:11884634-11884653 | MS.gene47889:CDS | 55.0% | |
| GGTGCTTGCTCTTCATGTGC+TGG | + | chr4.1:11884655-11884674 | MS.gene47889:CDS | 55.0% | |
| GTACATTCTCGACGTAGCCG+AGG | + | chr4.1:11884597-11884616 | MS.gene47889:CDS | 55.0% | |
| TGAGCACCTCCTTCATCAGG+AGG | + | chr4.1:11884416-11884435 | MS.gene47889:CDS | 55.0% | |
| TGGTGAGCACCTCCTTCATC+AGG | + | chr4.1:11884413-11884432 | MS.gene47889:CDS | 55.0% | |
| ! | CATTGGCTGCCTCCTGATGA+AGG | - | chr4.1:11884428-11884447 | None:intergenic | 55.0% |
| !! | GATGAAGGAGGTGCTCACCA+TGG | - | chr4.1:11884413-11884432 | None:intergenic | 55.0% |
| ACCACCACAGCAGCCCTATC+AGG | + | chr4.1:11884385-11884404 | MS.gene47889:CDS | 60.0% | |
| CTCGACGTAGCCGAGGAACA+AGG | + | chr4.1:11884604-11884623 | MS.gene47889:CDS | 60.0% | |
| GCACCAGCCCTGCATGAGTA+AGG | - | chr4.1:11884640-11884659 | None:intergenic | 60.0% | |
| GGTTCCTGATAGGGCTGCTG+TGG | - | chr4.1:11884392-11884411 | None:intergenic | 60.0% | |
| TCCTGATAGGGCTGCTGTGG+TGG | - | chr4.1:11884389-11884408 | None:intergenic | 60.0% | |
| TGATAGGGCTGCTGTGGTGG+TGG | - | chr4.1:11884386-11884405 | None:intergenic | 60.0% | |
| TGGCTGCCTCCTGATGAAGG+AGG | - | chr4.1:11884425-11884444 | None:intergenic | 60.0% | |
| ! | TTTGGTGTGAAGGCCGGACG+TGG | + | chr4.1:11884490-11884509 | MS.gene47889:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11884379 | 11884825 | 11884379 | ID=MS.gene47889 |
| chr4.1 | mRNA | 11884379 | 11884825 | 11884379 | ID=MS.gene47889.t1;Parent=MS.gene47889 |
| chr4.1 | exon | 11884379 | 11884825 | 11884379 | ID=MS.gene47889.t1.exon1;Parent=MS.gene47889.t1 |
| chr4.1 | CDS | 11884379 | 11884825 | 11884379 | ID=cds.MS.gene47889.t1;Parent=MS.gene47889.t1 |
| Gene Sequence |
| Protein sequence |
