Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27932.t1 | XP_003629958.1 | 97.3 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 2.70E-75 | 291.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27932.t1 | Q43517 | 67.1 | 143 | 47 | 0 | 6 | 148 | 2 | 144 | 3.6e-52 | 205.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27932.t1 | G7L8U4 | 97.3 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 2.0e-75 | 291.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene27932 | 0.875241 | 3.60E-68 | -1.69E-46 |
| MS.gene049173 | MS.gene27932 | 0.868789 | 5.03E-66 | -1.69E-46 |
| MS.gene049217 | MS.gene27932 | 0.886608 | 2.95E-72 | -1.69E-46 |
| MS.gene049222 | MS.gene27932 | 0.879803 | 9.25E-70 | -1.69E-46 |
| MS.gene049232 | MS.gene27932 | 0.864521 | 1.15E-64 | -1.69E-46 |
| MS.gene049285 | MS.gene27932 | 0.922634 | 7.62E-89 | -1.69E-46 |
| MS.gene049320 | MS.gene27932 | 0.945584 | 2.32E-104 | -1.69E-46 |
| MS.gene04939 | MS.gene27932 | 0.81187 | 5.64E-51 | -1.69E-46 |
| MS.gene049600 | MS.gene27932 | 0.82986 | 4.06E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene27932 | 0.848995 | 4.29E-60 | -1.69E-46 |
| MS.gene049615 | MS.gene27932 | 0.811296 | 7.52E-51 | -1.69E-46 |
| MS.gene049627 | MS.gene27932 | 0.821671 | 3.57E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene27932 | 0.82799 | 1.15E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene27932 | 0.823991 | 1.03E-53 | -1.69E-46 |
| MS.gene049828 | MS.gene27932 | 0.824045 | 9.99E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene27932 | 0.890245 | 1.17E-73 | -1.69E-46 |
| MS.gene050163 | MS.gene27932 | 0.933761 | 1.15E-95 | -1.69E-46 |
| MS.gene050165 | MS.gene27932 | 0.921952 | 1.85E-88 | -1.69E-46 |
| MS.gene050216 | MS.gene27932 | 0.83747 | 5.10E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene27932 | 0.819456 | 1.15E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene27932 | 0.896024 | 5.49E-76 | -1.69E-46 |
| MS.gene050353 | MS.gene27932 | -0.80622 | 9.14E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene27932 | -0.822385 | 2.44E-53 | -1.69E-46 |
| MS.gene050444 | MS.gene27932 | 0.801571 | 8.45E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene27932 | 0.813464 | 2.53E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene27932 | 0.9285 | 2.65E-92 | -1.69E-46 |
| MS.gene050518 | MS.gene27932 | 0.92183 | 2.16E-88 | -1.69E-46 |
| MS.gene050520 | MS.gene27932 | 0.810826 | 9.50E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene27932 | 0.820787 | 5.70E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene27932 | 0.866225 | 3.33E-65 | -1.69E-46 |
| MS.gene050612 | MS.gene27932 | 0.924334 | 8.10E-90 | -1.69E-46 |
| MS.gene050662 | MS.gene27932 | 0.820236 | 7.63E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene27932 | 0.897676 | 1.12E-76 | -1.69E-46 |
| MS.gene050686 | MS.gene27932 | 0.820931 | 5.28E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene27932 | 0.908285 | 2.02E-81 | -1.69E-46 |
| MS.gene050747 | MS.gene27932 | 0.831282 | 1.82E-55 | -1.69E-46 |
| MS.gene050767 | MS.gene27932 | 0.85617 | 3.85E-62 | -1.69E-46 |
| MS.gene050770 | MS.gene27932 | 0.854792 | 9.72E-62 | -1.69E-46 |
| MS.gene050772 | MS.gene27932 | 0.890082 | 1.36E-73 | -1.69E-46 |
| MS.gene05080 | MS.gene27932 | 0.850748 | 1.39E-60 | -1.69E-46 |
| MS.gene050868 | MS.gene27932 | 0.827243 | 1.74E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene27932 | 0.827841 | 1.25E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene27932 | 0.845462 | 4.00E-59 | -1.69E-46 |
| MS.gene050950 | MS.gene27932 | 0.827992 | 1.15E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene27932 | 0.930062 | 2.83E-93 | -1.69E-46 |
| MS.gene05100 | MS.gene27932 | 0.907893 | 3.10E-81 | -1.69E-46 |
| MS.gene051127 | MS.gene27932 | -0.819478 | 1.14E-52 | -1.69E-46 |
| MS.gene05118 | MS.gene27932 | 0.818698 | 1.71E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene27932 | 0.855094 | 7.94E-62 | -1.69E-46 |
| MS.gene051268 | MS.gene27932 | 0.801049 | 1.08E-48 | -1.69E-46 |
| MS.gene051317 | MS.gene27932 | 0.831394 | 1.71E-55 | -1.69E-46 |
| MS.gene051509 | MS.gene27932 | 0.83447 | 2.94E-56 | -1.69E-46 |
| MS.gene051551 | MS.gene27932 | 0.905155 | 5.78E-80 | -1.69E-46 |
| MS.gene051564 | MS.gene27932 | 0.806889 | 6.61E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene27932 | 0.822467 | 2.33E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene27932 | 0.808972 | 2.38E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene27932 | 0.931058 | 6.61E-94 | -1.69E-46 |
| MS.gene051858 | MS.gene27932 | 0.82638 | 2.80E-54 | -1.69E-46 |
| MS.gene051949 | MS.gene27932 | 0.852141 | 5.61E-61 | -1.69E-46 |
| MS.gene052164 | MS.gene27932 | 0.867776 | 1.07E-65 | -1.69E-46 |
| MS.gene052271 | MS.gene27932 | 0.901666 | 2.13E-78 | -1.69E-46 |
| MS.gene052290 | MS.gene27932 | 0.805941 | 1.05E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene27932 | 0.845186 | 4.75E-59 | -1.69E-46 |
| MS.gene052482 | MS.gene27932 | 0.833189 | 6.15E-56 | -1.69E-46 |
| MS.gene052486 | MS.gene27932 | 0.83689 | 7.18E-57 | -1.69E-46 |
| MS.gene052503 | MS.gene27932 | 0.802963 | 4.37E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene27932 | 0.850151 | 2.04E-60 | -1.69E-46 |
| MS.gene052670 | MS.gene27932 | 0.857537 | 1.53E-62 | -1.69E-46 |
| MS.gene052822 | MS.gene27932 | 0.815171 | 1.06E-51 | -1.69E-46 |
| MS.gene052916 | MS.gene27932 | 0.84962 | 2.88E-60 | -1.69E-46 |
| MS.gene052966 | MS.gene27932 | 0.820247 | 7.59E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene27932 | 0.863066 | 3.25E-64 | -1.69E-46 |
| MS.gene053018 | MS.gene27932 | 0.82209 | 2.85E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene27932 | 0.825858 | 3.73E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene27932 | 0.836967 | 6.86E-57 | -1.69E-46 |
| MS.gene053207 | MS.gene27932 | 0.865751 | 4.70E-65 | -1.69E-46 |
| MS.gene053213 | MS.gene27932 | 0.912364 | 2.12E-83 | -1.69E-46 |
| MS.gene053286 | MS.gene27932 | 0.916103 | 2.66E-85 | -1.69E-46 |
| MS.gene053322 | MS.gene27932 | 0.853538 | 2.24E-61 | -1.69E-46 |
| MS.gene053420 | MS.gene27932 | -0.818783 | 1.64E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene27932 | 0.838088 | 3.54E-57 | -1.69E-46 |
| MS.gene053561 | MS.gene27932 | -0.829469 | 5.06E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene27932 | 0.869589 | 2.77E-66 | -1.69E-46 |
| MS.gene053626 | MS.gene27932 | 0.827447 | 1.56E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene27932 | 0.897349 | 1.53E-76 | -1.69E-46 |
| MS.gene053824 | MS.gene27932 | 0.802096 | 6.60E-49 | -1.69E-46 |
| MS.gene053915 | MS.gene27932 | 0.809237 | 2.09E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene27932 | 0.859265 | 4.66E-63 | -1.69E-46 |
| MS.gene054374 | MS.gene27932 | 0.821198 | 4.59E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene27932 | 0.823763 | 1.16E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene27932 | 0.820549 | 6.47E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene27932 | 0.861293 | 1.14E-63 | -1.69E-46 |
| MS.gene054600 | MS.gene27932 | 0.890317 | 1.10E-73 | -1.69E-46 |
| MS.gene054616 | MS.gene27932 | -0.808153 | 3.56E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene27932 | 0.929616 | 5.38E-93 | -1.69E-46 |
| MS.gene054708 | MS.gene27932 | -0.804072 | 2.57E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene27932 | 0.838637 | 2.55E-57 | -1.69E-46 |
| MS.gene054802 | MS.gene27932 | 0.807268 | 5.49E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene27932 | 0.804022 | 2.64E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene27932 | 0.810489 | 1.12E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene27932 | 0.813714 | 2.23E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene27932 | 0.918229 | 2.02E-86 | -1.69E-46 |
| MS.gene05505 | MS.gene27932 | 0.817957 | 2.52E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene27932 | -0.845551 | 3.78E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene27932 | 0.807606 | 4.66E-50 | -1.69E-46 |
| MS.gene055212 | MS.gene27932 | 0.849342 | 3.44E-60 | -1.69E-46 |
| MS.gene055254 | MS.gene27932 | 0.810291 | 1.24E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene27932 | 0.930224 | 2.23E-93 | -1.69E-46 |
| MS.gene055397 | MS.gene27932 | 0.862427 | 5.11E-64 | -1.69E-46 |
| MS.gene055499 | MS.gene27932 | 0.872783 | 2.44E-67 | -1.69E-46 |
| MS.gene055502 | MS.gene27932 | 0.893935 | 3.95E-75 | -1.69E-46 |
| MS.gene055577 | MS.gene27932 | 0.859472 | 4.04E-63 | -1.69E-46 |
| MS.gene055634 | MS.gene27932 | 0.837306 | 5.62E-57 | -1.69E-46 |
| MS.gene055636 | MS.gene27932 | 0.838423 | 2.90E-57 | -1.69E-46 |
| MS.gene055638 | MS.gene27932 | 0.859594 | 3.71E-63 | -1.69E-46 |
| MS.gene055647 | MS.gene27932 | 0.852758 | 3.74E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene27932 | 0.87528 | 3.49E-68 | -1.69E-46 |
| MS.gene055748 | MS.gene27932 | 0.854309 | 1.34E-61 | -1.69E-46 |
| MS.gene055750 | MS.gene27932 | 0.851382 | 9.21E-61 | -1.69E-46 |
| MS.gene055751 | MS.gene27932 | 0.858691 | 6.93E-63 | -1.69E-46 |
| MS.gene055776 | MS.gene27932 | 0.874974 | 4.44E-68 | -1.69E-46 |
| MS.gene05589 | MS.gene27932 | 0.818001 | 2.46E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene27932 | 0.853084 | 3.02E-61 | -1.69E-46 |
| MS.gene055941 | MS.gene27932 | 0.831513 | 1.60E-55 | -1.69E-46 |
| MS.gene055956 | MS.gene27932 | -0.818469 | 1.93E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene27932 | 0.851394 | 9.13E-61 | -1.69E-46 |
| MS.gene056374 | MS.gene27932 | 0.899285 | 2.31E-77 | -1.69E-46 |
| MS.gene056409 | MS.gene27932 | 0.812133 | 4.94E-51 | -1.69E-46 |
| MS.gene056446 | MS.gene27932 | 0.8116 | 6.46E-51 | -1.69E-46 |
| MS.gene056449 | MS.gene27932 | 0.841189 | 5.53E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene27932 | 0.872172 | 3.90E-67 | -1.69E-46 |
| MS.gene056510 | MS.gene27932 | 0.888656 | 4.87E-73 | -1.69E-46 |
| MS.gene056550 | MS.gene27932 | -0.803572 | 3.27E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene27932 | 0.937484 | 3.21E-98 | -1.69E-46 |
| MS.gene056692 | MS.gene27932 | 0.833195 | 6.13E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene27932 | 0.818907 | 1.53E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene27932 | 0.893496 | 5.95E-75 | -1.69E-46 |
| MS.gene057246 | MS.gene27932 | 0.829006 | 6.55E-55 | -1.69E-46 |
| MS.gene057331 | MS.gene27932 | 0.844882 | 5.74E-59 | -1.69E-46 |
| MS.gene057416 | MS.gene27932 | 0.863514 | 2.36E-64 | -1.69E-46 |
| MS.gene05753 | MS.gene27932 | 0.806728 | 7.14E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene27932 | 0.835626 | 1.50E-56 | -1.69E-46 |
| MS.gene05787 | MS.gene27932 | 0.801979 | 6.97E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene27932 | 0.814842 | 1.25E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene27932 | 0.831272 | 1.83E-55 | -1.69E-46 |
| MS.gene058130 | MS.gene27932 | 0.833433 | 5.35E-56 | -1.69E-46 |
| MS.gene058323 | MS.gene27932 | 0.823025 | 1.73E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene27932 | 0.826423 | 2.74E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene27932 | 0.924886 | 3.86E-90 | -1.69E-46 |
| MS.gene058544 | MS.gene27932 | 0.86147 | 1.00E-63 | -1.69E-46 |
| MS.gene058719 | MS.gene27932 | 0.81643 | 5.55E-52 | -1.69E-46 |
| MS.gene058723 | MS.gene27932 | 0.890406 | 1.01E-73 | -1.69E-46 |
| MS.gene058773 | MS.gene27932 | 0.897666 | 1.13E-76 | -1.69E-46 |
| MS.gene058838 | MS.gene27932 | 0.800192 | 1.62E-48 | -1.69E-46 |
| MS.gene058978 | MS.gene27932 | -0.806773 | 6.99E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene27932 | 0.928438 | 2.89E-92 | -1.69E-46 |
| MS.gene059023 | MS.gene27932 | 0.836999 | 6.73E-57 | -1.69E-46 |
| MS.gene059029 | MS.gene27932 | 0.868782 | 5.05E-66 | -1.69E-46 |
| MS.gene05913 | MS.gene27932 | 0.853201 | 2.79E-61 | -1.69E-46 |
| MS.gene05934 | MS.gene27932 | 0.800293 | 1.54E-48 | -1.69E-46 |
| MS.gene059367 | MS.gene27932 | 0.862111 | 6.39E-64 | -1.69E-46 |
| MS.gene059368 | MS.gene27932 | 0.802784 | 4.76E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene27932 | 0.80805 | 3.75E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene27932 | 0.925275 | 2.29E-90 | -1.69E-46 |
| MS.gene059718 | MS.gene27932 | 0.902545 | 8.69E-79 | -1.69E-46 |
| MS.gene059756 | MS.gene27932 | 0.849889 | 2.42E-60 | -1.69E-46 |
| MS.gene059858 | MS.gene27932 | 0.811101 | 8.28E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene27932 | 0.895124 | 1.29E-75 | -1.69E-46 |
| MS.gene059902 | MS.gene27932 | 0.824483 | 7.88E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene27932 | 0.840547 | 8.14E-58 | -1.69E-46 |
| MS.gene060337 | MS.gene27932 | -0.841524 | 4.51E-58 | -1.69E-46 |
| MS.gene060341 | MS.gene27932 | 0.839526 | 1.50E-57 | -1.69E-46 |
| MS.gene060356 | MS.gene27932 | 0.856766 | 2.58E-62 | -1.69E-46 |
| MS.gene060482 | MS.gene27932 | 0.851697 | 7.50E-61 | -1.69E-46 |
| MS.gene060703 | MS.gene27932 | 0.889085 | 3.32E-73 | -1.69E-46 |
| MS.gene060727 | MS.gene27932 | 0.804231 | 2.39E-49 | -1.69E-46 |
| MS.gene060728 | MS.gene27932 | 0.845656 | 3.54E-59 | -1.69E-46 |
| MS.gene060762 | MS.gene27932 | 0.850156 | 2.04E-60 | -1.69E-46 |
| MS.gene060778 | MS.gene27932 | 0.835405 | 1.71E-56 | -1.69E-46 |
| MS.gene06077 | MS.gene27932 | 0.879384 | 1.30E-69 | -1.69E-46 |
| MS.gene060804 | MS.gene27932 | 0.813603 | 2.35E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene27932 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene27932 | 0.843605 | 1.26E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene27932 | 0.845768 | 3.30E-59 | -1.69E-46 |
| MS.gene061041 | MS.gene27932 | 0.801862 | 7.37E-49 | -1.69E-46 |
| MS.gene06105 | MS.gene27932 | 0.802908 | 4.49E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene27932 | 0.834732 | 2.53E-56 | -1.69E-46 |
| MS.gene061150 | MS.gene27932 | 0.88076 | 4.21E-70 | -1.69E-46 |
| MS.gene061171 | MS.gene27932 | 0.820689 | 6.01E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene27932 | 0.879353 | 1.34E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27932 | MS.gene74977 | PPI |
| MS.gene84322 | MS.gene27932 | PPI |
| MS.gene27932 | MS.gene024872 | PPI |
| MS.gene27932 | MS.gene21845 | PPI |
| MS.gene27932 | MS.gene000152 | PPI |
| MS.gene27932 | MS.gene067740 | PPI |
| MS.gene27932 | MS.gene029328 | PPI |
| MS.gene27932 | MS.gene034453 | PPI |
| MS.gene27932 | MS.gene88235 | PPI |
| MS.gene27932 | MS.gene35417 | PPI |
| MS.gene92294 | MS.gene27932 | PPI |
| MS.gene27932 | MS.gene43037 | PPI |
| MS.gene065061 | MS.gene27932 | PPI |
| MS.gene27932 | MS.gene66754 | PPI |
| MS.gene27932 | MS.gene03847 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27932.t1 | MTR_8g088720 | 97.297 | 148 | 4 | 0 | 1 | 148 | 1 | 148 | 7.18e-107 | 301 |
| MS.gene27932.t1 | MTR_2g006290 | 63.816 | 152 | 44 | 3 | 4 | 148 | 3 | 150 | 1.87e-63 | 191 |
| MS.gene27932.t1 | MTR_1g112030 | 56.164 | 146 | 57 | 5 | 4 | 146 | 18 | 159 | 1.57e-50 | 159 |
| MS.gene27932.t1 | MTR_1g112030 | 56.164 | 146 | 57 | 5 | 4 | 146 | 14 | 155 | 1.65e-50 | 159 |
| MS.gene27932.t1 | MTR_1g112050 | 55.782 | 147 | 62 | 3 | 1 | 146 | 9 | 153 | 6.20e-50 | 157 |
| MS.gene27932.t1 | MTR_2g086510 | 61.789 | 123 | 45 | 2 | 25 | 146 | 33 | 154 | 1.05e-49 | 156 |
| MS.gene27932.t1 | MTR_4g053120 | 57.037 | 135 | 51 | 3 | 19 | 146 | 20 | 154 | 5.77e-48 | 152 |
| MS.gene27932.t1 | MTR_5g006320 | 36.634 | 101 | 63 | 1 | 48 | 148 | 46 | 145 | 1.67e-17 | 74.7 |
| MS.gene27932.t1 | MTR_4g098490 | 36.585 | 82 | 52 | 0 | 65 | 146 | 77 | 158 | 3.29e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27932.t1 | AT1G60950 | 64.000 | 150 | 49 | 3 | 1 | 147 | 1 | 148 | 1.03e-65 | 197 |
| MS.gene27932.t1 | AT1G10960 | 61.333 | 150 | 53 | 3 | 1 | 147 | 1 | 148 | 5.54e-59 | 180 |
| MS.gene27932.t1 | AT2G27510 | 50.658 | 152 | 65 | 4 | 5 | 146 | 3 | 154 | 1.99e-44 | 143 |
| MS.gene27932.t1 | AT5G10000 | 43.182 | 132 | 71 | 3 | 19 | 147 | 18 | 148 | 1.23e-32 | 113 |
| MS.gene27932.t1 | AT4G14890 | 35.333 | 150 | 80 | 4 | 3 | 148 | 10 | 146 | 7.54e-17 | 72.8 |
| MS.gene27932.t1 | AT1G32550 | 40.244 | 82 | 49 | 0 | 65 | 146 | 72 | 153 | 1.26e-16 | 73.2 |
| MS.gene27932.t1 | AT1G32550 | 34.783 | 92 | 44 | 2 | 71 | 146 | 75 | 166 | 5.22e-12 | 60.8 |
Find 56 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGTGGGTCAGACTTTATT+TGG | 0.300570 | 4.4:+12313960 | MS.gene27932:CDS |
| CCACGTTAGGGAATGCTGTT+AGG | 0.301806 | 4.4:-12313944 | None:intergenic |
| GTAAGTTCTTTAGTTCCATC+TGG | 0.311839 | 4.4:-12314047 | None:intergenic |
| GCTGTTAGGGTTGTGTTCAT+TGG | 0.358114 | 4.4:-12313930 | None:intergenic |
| ACCACCACAGCAGCCCTATC+AGG | 0.384793 | 4.4:+12313873 | MS.gene27932:CDS |
| TGCTCACCATGGTTCCTGAT+AGG | 0.397541 | 4.4:-12313887 | None:intergenic |
| TGTGCTGGAAAAGTTGTAGA+AGG | 0.411785 | 4.4:+12314158 | MS.gene27932:CDS |
| AATAAAGTCTGACCCACGTT+AGG | 0.420347 | 4.4:-12313957 | None:intergenic |
| AATGAGCTTGATCTTGTAAC+TGG | 0.424868 | 4.4:-12314021 | None:intergenic |
| TCGAGAATGTACTCATTATC+CGG | 0.426007 | 4.4:-12314074 | None:intergenic |
| CTTCCTTACTCATGCAGGGC+TGG | 0.437541 | 4.4:+12314122 | MS.gene27932:CDS |
| GGTGCTTGCTCTTCATGTGC+TGG | 0.439901 | 4.4:+12314143 | MS.gene27932:CDS |
| TCGATCTTCCTTACTCATGC+AGG | 0.452165 | 4.4:+12314117 | MS.gene27932:CDS |
| GCTCACCATGGTTCCTGATA+GGG | 0.466904 | 4.4:-12313886 | None:intergenic |
| TCCTGATAGGGCTGCTGTGG+TGG | 0.470793 | 4.4:-12313874 | None:intergenic |
| CATTGGCTGCCTCCTGATGA+AGG | 0.472321 | 4.4:-12313913 | None:intergenic |
| ACTTTATTTGGTGTGAAGGC+CGG | 0.475879 | 4.4:+12313972 | MS.gene27932:CDS |
| TGATAGGGCTGCTGTGGTGG+TGG | 0.476979 | 4.4:-12313871 | None:intergenic |
| TGGTGAGCACCTCCTTCATC+AGG | 0.483290 | 4.4:+12313901 | MS.gene27932:CDS |
| TAAGTTCTTTAGTTCCATCT+GGG | 0.497202 | 4.4:-12314046 | None:intergenic |
| CACGTTAGGGAATGCTGTTA+GGG | 0.501804 | 4.4:-12313943 | None:intergenic |
| GCACCAGCCCTGCATGAGTA+AGG | 0.502602 | 4.4:-12314125 | None:intergenic |
| GATGATGATCAATTAAGTGC+TGG | 0.507761 | 4.4:+12314212 | MS.gene27932:CDS |
| TCAGACTTTATTTGGTGTGA+AGG | 0.514081 | 4.4:+12313968 | MS.gene27932:CDS |
| ATAAAGTCTGACCCACGTTA+GGG | 0.523812 | 4.4:-12313956 | None:intergenic |
| ATCAAGCTCATTACCCCAGA+TGG | 0.528289 | 4.4:+12314032 | MS.gene27932:CDS |
| AAAAGTTGTAGAAGGGGAAG+TGG | 0.534366 | 4.4:+12314166 | MS.gene27932:CDS |
| CTTGATCTTGTAACTGGCCA+TGG | 0.544201 | 4.4:-12314015 | None:intergenic |
| ATGATGATCAATTAAGTGCT+GGG | 0.551795 | 4.4:+12314213 | MS.gene27932:CDS |
| AAGATCGATGCCTTGTTCCT+CGG | 0.553403 | 4.4:-12314102 | None:intergenic |
| CTCGACGTAGCCGAGGAACA+AGG | 0.555180 | 4.4:+12314092 | MS.gene27932:CDS |
| CACTTAATTGATCATCATCA+AGG | 0.556300 | 4.4:-12314208 | None:intergenic |
| AACTAAAGAACTTACCTGCC+CGG | 0.559896 | 4.4:+12314055 | MS.gene27932:CDS |
| TTTGGTGTGAAGGCCGGACG+TGG | 0.560810 | 4.4:+12313978 | MS.gene27932:CDS |
| AATGTACTCATTATCCGGGC+AGG | 0.566913 | 4.4:-12314069 | None:intergenic |
| CGATCTTCCTTACTCATGCA+GGG | 0.578511 | 4.4:+12314118 | MS.gene27932:CDS |
| GTGCTGGAAAAGTTGTAGAA+GGG | 0.579438 | 4.4:+12314159 | MS.gene27932:CDS |
| GGTTCCTGATAGGGCTGCTG+TGG | 0.579627 | 4.4:-12313877 | None:intergenic |
| AGTGATACGACTTCCACGTC+CGG | 0.584494 | 4.4:-12313991 | None:intergenic |
| CGAGAATGTACTCATTATCC+GGG | 0.584894 | 4.4:-12314073 | None:intergenic |
| CCTTGTGTGTCTCAATAACA+AGG | 0.591064 | 4.4:-12314271 | None:intergenic |
| CCTAACAGCATTCCCTAACG+TGG | 0.597665 | 4.4:+12313944 | MS.gene27932:CDS |
| TGCTGGAAAAGTTGTAGAAG+GGG | 0.598351 | 4.4:+12314160 | MS.gene27932:CDS |
| TGGAAGTCGTATCACTGCCA+TGG | 0.614707 | 4.4:+12313998 | MS.gene27932:CDS |
| GTACATTCTCGACGTAGCCG+AGG | 0.630338 | 4.4:+12314085 | MS.gene27932:CDS |
| AAGTTCTTTAGTTCCATCTG+GGG | 0.631501 | 4.4:-12314045 | None:intergenic |
| AGCAGCCCTATCAGGAACCA+TGG | 0.637647 | 4.4:+12313881 | MS.gene27932:CDS |
| TGGCTGCCTCCTGATGAAGG+AGG | 0.644050 | 4.4:-12313910 | None:intergenic |
| GTGTGTCTCAATAACAAGGT+CGG | 0.646026 | 4.4:-12314267 | None:intergenic |
| CCTTGTTATTGAGACACACA+AGG | 0.649100 | 4.4:+12314271 | MS.gene27932:CDS |
| GATGAAGGAGGTGCTCACCA+TGG | 0.650251 | 4.4:-12313898 | None:intergenic |
| TCAATAACAAGGTCGGAACG+AGG | 0.657316 | 4.4:-12314260 | None:intergenic |
| CAATAACAAGGTCGGAACGA+GGG | 0.670427 | 4.4:-12314259 | None:intergenic |
| TGAGCACCTCCTTCATCAGG+AGG | 0.676610 | 4.4:+12313904 | MS.gene27932:CDS |
| CTAACAGCATTCCCTAACGT+GGG | 0.718396 | 4.4:+12313945 | MS.gene27932:CDS |
| TGTTATTGAGACACACAAGG+AGG | 0.740119 | 4.4:+12314274 | MS.gene27932:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATGATGATCAATTAAGTGCT+GGG | + | chr4.4:12314213-12314232 | MS.gene27932:CDS | 30.0% | |
| CACTTAATTGATCATCATCA+AGG | - | chr4.4:12314211-12314230 | None:intergenic | 30.0% | |
| ! | TAAGTTCTTTAGTTCCATCT+GGG | - | chr4.4:12314049-12314068 | None:intergenic | 30.0% |
| AATGAGCTTGATCTTGTAAC+TGG | - | chr4.4:12314024-12314043 | None:intergenic | 35.0% | |
| GATGATGATCAATTAAGTGC+TGG | + | chr4.4:12314212-12314231 | MS.gene27932:CDS | 35.0% | |
| TCGAGAATGTACTCATTATC+CGG | - | chr4.4:12314077-12314096 | None:intergenic | 35.0% | |
| ! | AAGTTCTTTAGTTCCATCTG+GGG | - | chr4.4:12314048-12314067 | None:intergenic | 35.0% |
| ! | GTAAGTTCTTTAGTTCCATC+TGG | - | chr4.4:12314050-12314069 | None:intergenic | 35.0% |
| !! | TCAGACTTTATTTGGTGTGA+AGG | + | chr4.4:12313968-12313987 | MS.gene27932:CDS | 35.0% |
| AAAAGTTGTAGAAGGGGAAG+TGG | + | chr4.4:12314166-12314185 | MS.gene27932:CDS | 40.0% | |
| AACGTGGGTCAGACTTTATT+TGG | + | chr4.4:12313960-12313979 | MS.gene27932:CDS | 40.0% | |
| AACTAAAGAACTTACCTGCC+CGG | + | chr4.4:12314055-12314074 | MS.gene27932:CDS | 40.0% | |
| AATAAAGTCTGACCCACGTT+AGG | - | chr4.4:12313960-12313979 | None:intergenic | 40.0% | |
| ATAAAGTCTGACCCACGTTA+GGG | - | chr4.4:12313959-12313978 | None:intergenic | 40.0% | |
| CCTTGTGTGTCTCAATAACA+AGG | - | chr4.4:12314274-12314293 | None:intergenic | 40.0% | |
| CGAGAATGTACTCATTATCC+GGG | - | chr4.4:12314076-12314095 | None:intergenic | 40.0% | |
| GTGCTGGAAAAGTTGTAGAA+GGG | + | chr4.4:12314159-12314178 | MS.gene27932:CDS | 40.0% | |
| GTGTGTCTCAATAACAAGGT+CGG | - | chr4.4:12314270-12314289 | None:intergenic | 40.0% | |
| TGCTGGAAAAGTTGTAGAAG+GGG | + | chr4.4:12314160-12314179 | MS.gene27932:CDS | 40.0% | |
| TGTGCTGGAAAAGTTGTAGA+AGG | + | chr4.4:12314158-12314177 | MS.gene27932:CDS | 40.0% | |
| TGTTATTGAGACACACAAGG+AGG | + | chr4.4:12314274-12314293 | MS.gene27932:CDS | 40.0% | |
| !! | ACTTTATTTGGTGTGAAGGC+CGG | + | chr4.4:12313972-12313991 | MS.gene27932:CDS | 40.0% |
| !! | CCTTGTTATTGAGACACACA+AGG | + | chr4.4:12314271-12314290 | MS.gene27932:CDS | 40.0% |
| AATGTACTCATTATCCGGGC+AGG | - | chr4.4:12314072-12314091 | None:intergenic | 45.0% | |
| ATCAAGCTCATTACCCCAGA+TGG | + | chr4.4:12314032-12314051 | MS.gene27932:CDS | 45.0% | |
| CAATAACAAGGTCGGAACGA+GGG | - | chr4.4:12314262-12314281 | None:intergenic | 45.0% | |
| CACGTTAGGGAATGCTGTTA+GGG | - | chr4.4:12313946-12313965 | None:intergenic | 45.0% | |
| CGATCTTCCTTACTCATGCA+GGG | + | chr4.4:12314118-12314137 | MS.gene27932:CDS | 45.0% | |
| CTAACAGCATTCCCTAACGT+GGG | + | chr4.4:12313945-12313964 | MS.gene27932:CDS | 45.0% | |
| CTTGATCTTGTAACTGGCCA+TGG | - | chr4.4:12314018-12314037 | None:intergenic | 45.0% | |
| GCTGTTAGGGTTGTGTTCAT+TGG | - | chr4.4:12313933-12313952 | None:intergenic | 45.0% | |
| TCAATAACAAGGTCGGAACG+AGG | - | chr4.4:12314263-12314282 | None:intergenic | 45.0% | |
| TCGATCTTCCTTACTCATGC+AGG | + | chr4.4:12314117-12314136 | MS.gene27932:CDS | 45.0% | |
| ! | AAGATCGATGCCTTGTTCCT+CGG | - | chr4.4:12314105-12314124 | None:intergenic | 45.0% |
| AGTGATACGACTTCCACGTC+CGG | - | chr4.4:12313994-12314013 | None:intergenic | 50.0% | |
| CCACGTTAGGGAATGCTGTT+AGG | - | chr4.4:12313947-12313966 | None:intergenic | 50.0% | |
| CCTAACAGCATTCCCTAACG+TGG | + | chr4.4:12313944-12313963 | MS.gene27932:CDS | 50.0% | |
| GCTCACCATGGTTCCTGATA+GGG | - | chr4.4:12313889-12313908 | None:intergenic | 50.0% | |
| TGCTCACCATGGTTCCTGAT+AGG | - | chr4.4:12313890-12313909 | None:intergenic | 50.0% | |
| TGGAAGTCGTATCACTGCCA+TGG | + | chr4.4:12313998-12314017 | MS.gene27932:CDS | 50.0% | |
| AGCAGCCCTATCAGGAACCA+TGG | + | chr4.4:12313881-12313900 | MS.gene27932:CDS | 55.0% | |
| CTTCCTTACTCATGCAGGGC+TGG | + | chr4.4:12314122-12314141 | MS.gene27932:CDS | 55.0% | |
| GGTGCTTGCTCTTCATGTGC+TGG | + | chr4.4:12314143-12314162 | MS.gene27932:CDS | 55.0% | |
| GTACATTCTCGACGTAGCCG+AGG | + | chr4.4:12314085-12314104 | MS.gene27932:CDS | 55.0% | |
| TGAGCACCTCCTTCATCAGG+AGG | + | chr4.4:12313904-12313923 | MS.gene27932:CDS | 55.0% | |
| TGGTGAGCACCTCCTTCATC+AGG | + | chr4.4:12313901-12313920 | MS.gene27932:CDS | 55.0% | |
| ! | CATTGGCTGCCTCCTGATGA+AGG | - | chr4.4:12313916-12313935 | None:intergenic | 55.0% |
| !! | GATGAAGGAGGTGCTCACCA+TGG | - | chr4.4:12313901-12313920 | None:intergenic | 55.0% |
| ACCACCACAGCAGCCCTATC+AGG | + | chr4.4:12313873-12313892 | MS.gene27932:CDS | 60.0% | |
| CTCGACGTAGCCGAGGAACA+AGG | + | chr4.4:12314092-12314111 | MS.gene27932:CDS | 60.0% | |
| GCACCAGCCCTGCATGAGTA+AGG | - | chr4.4:12314128-12314147 | None:intergenic | 60.0% | |
| GGTTCCTGATAGGGCTGCTG+TGG | - | chr4.4:12313880-12313899 | None:intergenic | 60.0% | |
| TCCTGATAGGGCTGCTGTGG+TGG | - | chr4.4:12313877-12313896 | None:intergenic | 60.0% | |
| TGATAGGGCTGCTGTGGTGG+TGG | - | chr4.4:12313874-12313893 | None:intergenic | 60.0% | |
| TGGCTGCCTCCTGATGAAGG+AGG | - | chr4.4:12313913-12313932 | None:intergenic | 60.0% | |
| ! | TTTGGTGTGAAGGCCGGACG+TGG | + | chr4.4:12313978-12313997 | MS.gene27932:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12313867 | 12314313 | 12313867 | ID=MS.gene27932 |
| chr4.4 | mRNA | 12313867 | 12314313 | 12313867 | ID=MS.gene27932.t1;Parent=MS.gene27932 |
| chr4.4 | exon | 12313867 | 12314313 | 12313867 | ID=MS.gene27932.t1.exon1;Parent=MS.gene27932.t1 |
| chr4.4 | CDS | 12313867 | 12314313 | 12313867 | ID=cds.MS.gene27932.t1;Parent=MS.gene27932.t1 |
| Gene Sequence |
| Protein sequence |
