Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55815.t1 | XP_013447222.1 | 93.9 | 147 | 9 | 0 | 1 | 147 | 1 | 147 | 1.30E-73 | 285.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55815.t1 | A0A072TUP6 | 93.9 | 147 | 9 | 0 | 1 | 147 | 1 | 147 | 9.5e-74 | 285.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene55815 | 0.882183 | 1.29E-70 | -1.69E-46 |
| MS.gene049171 | MS.gene55815 | 0.856467 | 3.15E-62 | -1.69E-46 |
| MS.gene049173 | MS.gene55815 | 0.804095 | 2.55E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene55815 | 0.868843 | 4.83E-66 | -1.69E-46 |
| MS.gene049222 | MS.gene55815 | 0.85233 | 4.95E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene55815 | 0.852088 | 5.80E-61 | -1.69E-46 |
| MS.gene049320 | MS.gene55815 | 0.839177 | 1.85E-57 | -1.69E-46 |
| MS.gene04938 | MS.gene55815 | 0.83516 | 1.97E-56 | -1.69E-46 |
| MS.gene04939 | MS.gene55815 | 0.862682 | 4.26E-64 | -1.69E-46 |
| MS.gene049427 | MS.gene55815 | 0.840683 | 7.50E-58 | -1.69E-46 |
| MS.gene049488 | MS.gene55815 | 0.860015 | 2.77E-63 | -1.69E-46 |
| MS.gene049609 | MS.gene55815 | 0.883197 | 5.50E-71 | -1.69E-46 |
| MS.gene049633 | MS.gene55815 | 0.854545 | 1.15E-61 | -1.69E-46 |
| MS.gene049805 | MS.gene55815 | 0.877258 | 7.26E-69 | -1.69E-46 |
| MS.gene050163 | MS.gene55815 | 0.849422 | 3.27E-60 | -1.69E-46 |
| MS.gene050165 | MS.gene55815 | 0.82669 | 2.36E-54 | -1.69E-46 |
| MS.gene050333 | MS.gene55815 | 0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene55815 | 0.812418 | 4.28E-51 | -1.69E-46 |
| MS.gene050475 | MS.gene55815 | -0.844828 | 5.94E-59 | -1.69E-46 |
| MS.gene050504 | MS.gene55815 | 0.830747 | 2.47E-55 | -1.69E-46 |
| MS.gene050518 | MS.gene55815 | 0.827588 | 1.44E-54 | -1.69E-46 |
| MS.gene050538 | MS.gene55815 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene050541 | MS.gene55815 | -0.844784 | 6.10E-59 | -1.69E-46 |
| MS.gene050577 | MS.gene55815 | 0.840951 | 6.38E-58 | -1.69E-46 |
| MS.gene050593 | MS.gene55815 | 0.849111 | 3.99E-60 | -1.69E-46 |
| MS.gene050612 | MS.gene55815 | 0.829045 | 6.41E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene55815 | 0.820457 | 6.79E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene55815 | 0.86057 | 1.88E-63 | -1.69E-46 |
| MS.gene050690 | MS.gene55815 | 0.816752 | 4.70E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene55815 | 0.878243 | 3.29E-69 | -1.69E-46 |
| MS.gene050747 | MS.gene55815 | 0.860998 | 1.40E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene55815 | 0.861721 | 8.41E-64 | -1.69E-46 |
| MS.gene05080 | MS.gene55815 | 0.84184 | 3.72E-58 | -1.69E-46 |
| MS.gene05081 | MS.gene55815 | 0.8262 | 3.09E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene55815 | 0.855106 | 7.88E-62 | -1.69E-46 |
| MS.gene050986 | MS.gene55815 | 0.844418 | 7.66E-59 | -1.69E-46 |
| MS.gene05100 | MS.gene55815 | 0.817448 | 3.28E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene55815 | 0.843786 | 1.13E-58 | -1.69E-46 |
| MS.gene051167 | MS.gene55815 | -0.810286 | 1.24E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene55815 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene051336 | MS.gene55815 | 0.816793 | 4.60E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene55815 | 0.844065 | 9.52E-59 | -1.69E-46 |
| MS.gene051551 | MS.gene55815 | 0.810786 | 9.69E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene55815 | 0.835578 | 1.55E-56 | -1.69E-46 |
| MS.gene051694 | MS.gene55815 | 0.820842 | 5.54E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene55815 | 0.845308 | 4.40E-59 | -1.69E-46 |
| MS.gene051838 | MS.gene55815 | 0.855251 | 7.15E-62 | -1.69E-46 |
| MS.gene051858 | MS.gene55815 | 0.842198 | 2.99E-58 | -1.69E-46 |
| MS.gene052164 | MS.gene55815 | 0.826103 | 3.26E-54 | -1.69E-46 |
| MS.gene052271 | MS.gene55815 | 0.826813 | 2.21E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene55815 | 0.801032 | 1.09E-48 | -1.69E-46 |
| MS.gene052322 | MS.gene55815 | 0.815429 | 9.29E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene55815 | 0.82774 | 1.32E-54 | -1.69E-46 |
| MS.gene05240 | MS.gene55815 | -0.800172 | 1.63E-48 | -1.69E-46 |
| MS.gene052421 | MS.gene55815 | 0.857387 | 1.69E-62 | -1.69E-46 |
| MS.gene052481 | MS.gene55815 | 0.83588 | 1.30E-56 | -1.69E-46 |
| MS.gene052484 | MS.gene55815 | 0.831111 | 2.01E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene55815 | 0.864626 | 1.06E-64 | -1.69E-46 |
| MS.gene052503 | MS.gene55815 | 0.873031 | 2.01E-67 | -1.69E-46 |
| MS.gene052505 | MS.gene55815 | 0.863451 | 2.47E-64 | -1.69E-46 |
| MS.gene052615 | MS.gene55815 | 0.916191 | 2.40E-85 | -1.69E-46 |
| MS.gene052823 | MS.gene55815 | 0.863648 | 2.14E-64 | -1.69E-46 |
| MS.gene052825 | MS.gene55815 | 0.859555 | 3.82E-63 | -1.69E-46 |
| MS.gene052872 | MS.gene55815 | 0.808393 | 3.17E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene55815 | 0.808066 | 3.72E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene55815 | 0.824765 | 6.76E-54 | -1.69E-46 |
| MS.gene053009 | MS.gene55815 | 0.813441 | 2.56E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene55815 | 0.846067 | 2.74E-59 | -1.69E-46 |
| MS.gene053207 | MS.gene55815 | 0.877888 | 4.38E-69 | -1.69E-46 |
| MS.gene053213 | MS.gene55815 | 0.865216 | 6.93E-65 | -1.69E-46 |
| MS.gene053286 | MS.gene55815 | 0.855764 | 5.07E-62 | -1.69E-46 |
| MS.gene053322 | MS.gene55815 | 0.827361 | 1.63E-54 | -1.69E-46 |
| MS.gene053436 | MS.gene55815 | 0.835953 | 1.24E-56 | -1.69E-46 |
| MS.gene053480 | MS.gene55815 | 0.861364 | 1.08E-63 | -1.69E-46 |
| MS.gene053574 | MS.gene55815 | 0.847364 | 1.21E-59 | -1.69E-46 |
| MS.gene053579 | MS.gene55815 | 0.809262 | 2.06E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene55815 | 0.814624 | 1.40E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene55815 | 0.899005 | 3.04E-77 | -1.69E-46 |
| MS.gene053824 | MS.gene55815 | 0.820356 | 7.16E-53 | -1.69E-46 |
| MS.gene053873 | MS.gene55815 | 0.806083 | 9.77E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene55815 | 0.850286 | 1.87E-60 | -1.69E-46 |
| MS.gene053915 | MS.gene55815 | 0.837288 | 5.68E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene55815 | 0.807842 | 4.15E-50 | -1.69E-46 |
| MS.gene054107 | MS.gene55815 | 0.807483 | 4.94E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene55815 | 0.818626 | 1.78E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene55815 | 0.844332 | 8.07E-59 | -1.69E-46 |
| MS.gene054600 | MS.gene55815 | 0.857387 | 1.69E-62 | -1.69E-46 |
| MS.gene054642 | MS.gene55815 | 0.841777 | 3.87E-58 | -1.69E-46 |
| MS.gene05470 | MS.gene55815 | 0.838495 | 2.78E-57 | -1.69E-46 |
| MS.gene054742 | MS.gene55815 | -0.804713 | 1.89E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene55815 | -0.825071 | 5.73E-54 | -1.69E-46 |
| MS.gene054927 | MS.gene55815 | 0.875564 | 2.79E-68 | -1.69E-46 |
| MS.gene054954 | MS.gene55815 | 0.828718 | 7.69E-55 | -1.69E-46 |
| MS.gene05505 | MS.gene55815 | 0.837921 | 3.91E-57 | -1.69E-46 |
| MS.gene055206 | MS.gene55815 | 0.864746 | 9.74E-65 | -1.69E-46 |
| MS.gene055289 | MS.gene55815 | 0.818143 | 2.29E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene55815 | 0.847634 | 1.02E-59 | -1.69E-46 |
| MS.gene055370 | MS.gene55815 | 0.806316 | 8.73E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene55815 | 0.823048 | 1.71E-53 | -1.69E-46 |
| MS.gene055486 | MS.gene55815 | 0.829295 | 5.58E-55 | -1.69E-46 |
| MS.gene055499 | MS.gene55815 | 0.814621 | 1.40E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene55815 | 0.868287 | 7.31E-66 | -1.69E-46 |
| MS.gene055577 | MS.gene55815 | 0.840852 | 6.77E-58 | -1.69E-46 |
| MS.gene055647 | MS.gene55815 | 0.843241 | 1.58E-58 | -1.69E-46 |
| MS.gene055722 | MS.gene55815 | 0.832381 | 9.77E-56 | -1.69E-46 |
| MS.gene05589 | MS.gene55815 | 0.811257 | 7.66E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene55815 | 0.800317 | 1.53E-48 | -1.69E-46 |
| MS.gene055941 | MS.gene55815 | 0.855147 | 7.67E-62 | -1.69E-46 |
| MS.gene056040 | MS.gene55815 | 0.840076 | 1.08E-57 | -1.69E-46 |
| MS.gene056083 | MS.gene55815 | 0.851147 | 1.07E-60 | -1.69E-46 |
| MS.gene056166 | MS.gene55815 | 0.822967 | 1.78E-53 | -1.69E-46 |
| MS.gene056374 | MS.gene55815 | 0.820343 | 7.21E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene55815 | 0.809077 | 2.26E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene55815 | 0.821707 | 3.50E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene55815 | 0.813714 | 2.23E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene55815 | 0.806684 | 7.30E-50 | -1.69E-46 |
| MS.gene056610 | MS.gene55815 | 0.807888 | 4.06E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene55815 | 0.848955 | 4.41E-60 | -1.69E-46 |
| MS.gene056692 | MS.gene55815 | 0.81382 | 2.11E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene55815 | 0.81587 | 7.41E-52 | -1.69E-46 |
| MS.gene056946 | MS.gene55815 | 0.806138 | 9.51E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene55815 | 0.809958 | 1.46E-50 | -1.69E-46 |
| MS.gene057048 | MS.gene55815 | 0.848348 | 6.49E-60 | -1.69E-46 |
| MS.gene057076 | MS.gene55815 | 0.874847 | 4.90E-68 | -1.69E-46 |
| MS.gene057124 | MS.gene55815 | 0.838515 | 2.75E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene55815 | 0.822352 | 2.48E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene55815 | 0.840097 | 1.07E-57 | -1.69E-46 |
| MS.gene057196 | MS.gene55815 | 0.845114 | 4.97E-59 | -1.69E-46 |
| MS.gene057331 | MS.gene55815 | 0.805614 | 1.23E-49 | -1.69E-46 |
| MS.gene057332 | MS.gene55815 | 0.812596 | 3.91E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene55815 | 0.883161 | 5.67E-71 | -1.69E-46 |
| MS.gene057658 | MS.gene55815 | 0.842394 | 2.66E-58 | -1.69E-46 |
| MS.gene057734 | MS.gene55815 | 0.805336 | 1.40E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene55815 | 0.830502 | 2.83E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene55815 | 0.825164 | 5.44E-54 | -1.69E-46 |
| MS.gene057831 | MS.gene55815 | 0.84542 | 4.11E-59 | -1.69E-46 |
| MS.gene057856 | MS.gene55815 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene55815 | 0.859236 | 4.75E-63 | -1.69E-46 |
| MS.gene058130 | MS.gene55815 | 0.838848 | 2.25E-57 | -1.69E-46 |
| MS.gene058233 | MS.gene55815 | 0.805556 | 1.26E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene55815 | 0.841477 | 4.64E-58 | -1.69E-46 |
| MS.gene05837 | MS.gene55815 | 0.825349 | 4.92E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene55815 | 0.872083 | 4.18E-67 | -1.69E-46 |
| MS.gene058444 | MS.gene55815 | 0.823167 | 1.60E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene55815 | 0.87747 | 6.12E-69 | -1.69E-46 |
| MS.gene058723 | MS.gene55815 | 0.816372 | 5.72E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene55815 | 0.819713 | 1.00E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene55815 | 0.860782 | 1.63E-63 | -1.69E-46 |
| MS.gene05883 | MS.gene55815 | 0.864841 | 9.10E-65 | -1.69E-46 |
| MS.gene05886 | MS.gene55815 | 0.803446 | 3.47E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene55815 | 0.834955 | 2.22E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene55815 | 0.864271 | 1.37E-64 | -1.69E-46 |
| MS.gene059029 | MS.gene55815 | 0.809192 | 2.14E-50 | -1.69E-46 |
| MS.gene05914 | MS.gene55815 | 0.8326 | 8.62E-56 | -1.69E-46 |
| MS.gene059303 | MS.gene55815 | 0.811634 | 6.35E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene55815 | 0.834567 | 2.78E-56 | -1.69E-46 |
| MS.gene059455 | MS.gene55815 | 0.834252 | 3.34E-56 | -1.69E-46 |
| MS.gene059536 | MS.gene55815 | 0.833975 | 3.92E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene55815 | 0.86682 | 2.16E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene55815 | 0.804041 | 2.61E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene55815 | 0.801939 | 7.10E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene55815 | 0.883721 | 3.53E-71 | -1.69E-46 |
| MS.gene059756 | MS.gene55815 | 0.864658 | 1.04E-64 | -1.69E-46 |
| MS.gene059801 | MS.gene55815 | 0.803154 | 3.99E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene55815 | 0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene059902 | MS.gene55815 | 0.840326 | 9.30E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene55815 | 0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene55815 | 0.806076 | 9.80E-50 | -1.69E-46 |
| MS.gene060469 | MS.gene55815 | 0.802928 | 4.45E-49 | -1.69E-46 |
| MS.gene060485 | MS.gene55815 | 0.833916 | 4.05E-56 | -1.69E-46 |
| MS.gene060675 | MS.gene55815 | 0.802492 | 5.47E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene55815 | 0.834097 | 3.65E-56 | -1.69E-46 |
| MS.gene060778 | MS.gene55815 | 0.810663 | 1.03E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene55815 | 0.825431 | 4.71E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene55815 | 0.816989 | 4.16E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene55815 | 0.855224 | 7.28E-62 | -1.69E-46 |
| MS.gene060837 | MS.gene55815 | 0.802394 | 5.73E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene55815 | 0.869759 | 2.43E-66 | -1.69E-46 |
| MS.gene061041 | MS.gene55815 | 0.800837 | 1.19E-48 | -1.69E-46 |
| MS.gene061150 | MS.gene55815 | 0.856916 | 2.33E-62 | -1.69E-46 |
| MS.gene061200 | MS.gene55815 | 0.821691 | 3.53E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55815.t1 | MTR_8g099615 | 95.000 | 140 | 7 | 0 | 1 | 140 | 1 | 140 | 5.36e-98 | 280 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55815.t1 | AT5G42070 | 78.571 | 70 | 15 | 0 | 65 | 134 | 69 | 138 | 7.90e-36 | 122 |
Find 47 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTCTACGTTCAATTAA+AGG | 0.240046 | 4.3:-4411352 | MS.gene55815:CDS |
| TGTCCTGGATTTGTGGCTTC+TGG | 0.277176 | 4.3:-4411767 | MS.gene55815:CDS |
| GGTGGTATTGCAACAGTTCC+TGG | 0.294401 | 4.3:-4411824 | MS.gene55815:CDS |
| CATGGCCTGTATGCCTTTAT+AGG | 0.312442 | 4.3:+4411788 | None:intergenic |
| CTTTGGCTGGTGGCCTATAA+AGG | 0.340571 | 4.3:-4411801 | MS.gene55815:CDS |
| ATTGCAACAGTTCCTGGCTT+TGG | 0.355448 | 4.3:-4411818 | MS.gene55815:CDS |
| CAGGCCATGTCCTGGATTTG+TGG | 0.362074 | 4.3:-4411774 | MS.gene55815:CDS |
| CAACAGTTCCTGGCTTTGGC+TGG | 0.392114 | 4.3:-4411814 | MS.gene55815:CDS |
| CACCTCTACGTTCAATTAAA+GGG | 0.424582 | 4.3:-4411351 | MS.gene55815:CDS |
| CAGTTCCTGGCTTTGGCTGG+TGG | 0.448784 | 4.3:-4411811 | MS.gene55815:CDS |
| GCAGAAGAAATGAGTGAAGT+TGG | 0.456714 | 4.3:+4412042 | None:intergenic |
| CAATGGTGAGGGTAGGATGC+AGG | 0.456901 | 4.3:-4411846 | MS.gene55815:CDS |
| GAAACAGCAAGTTCATCATC+TGG | 0.480522 | 4.3:+4412018 | None:intergenic |
| GACGAGGTTGTCTCCGGTAG+TGG | 0.489301 | 4.3:-4411713 | MS.gene55815:CDS |
| CCACCAGAAGCCACAAATCC+AGG | 0.502695 | 4.3:+4411764 | None:intergenic |
| GACTTGGAGTCAGTTACAGT+TGG | 0.504211 | 4.3:+4411677 | None:intergenic |
| TGGATGGTACCTCTGTTTAG+TGG | 0.504482 | 4.3:+4411978 | None:intergenic |
| AAGGCATACAGGCCATGTCC+TGG | 0.519447 | 4.3:-4411782 | MS.gene55815:CDS |
| GGAACAAATATCTTAGTAGC+TGG | 0.533811 | 4.3:+4412081 | None:intergenic |
| TGGTGGTAGGTACAGACGAC+AGG | 0.534138 | 4.3:-4411747 | MS.gene55815:CDS |
| GATTTGTGGCTTCTGGTGGT+AGG | 0.534194 | 4.3:-4411760 | MS.gene55815:CDS |
| ATAGGCCACCAGCCAAAGCC+AGG | 0.536722 | 4.3:+4411806 | None:intergenic |
| TCTAGTTAGTTCAAATGAGA+AGG | 0.537196 | 4.3:-4411538 | MS.gene55815:CDS |
| AGCATGGACGAGGTTGTCTC+CGG | 0.542240 | 4.3:-4411719 | MS.gene55815:CDS |
| GAAGTTGGAGAGCATAGTGT+GGG | 0.545271 | 4.3:+4412057 | None:intergenic |
| GGAAACGAAGAAATTGAGAA+AGG | 0.546629 | 4.3:-4411872 | MS.gene55815:CDS |
| TGAAGTTGGAGAGCATAGTG+TGG | 0.558341 | 4.3:+4412056 | None:intergenic |
| CCTGGATTTGTGGCTTCTGG+TGG | 0.563457 | 4.3:-4411764 | MS.gene55815:CDS |
| GAAATTGAGAAAGGATGCAA+TGG | 0.563789 | 4.3:-4411863 | MS.gene55815:CDS |
| TGATGATAATGTTGAGGTGT+TGG | 0.564881 | 4.3:+4412135 | None:intergenic |
| AAGGATGCAATGGTGAGGGT+AGG | 0.574706 | 4.3:-4411853 | MS.gene55815:CDS |
| AATGGTGAGGGTAGGATGCA+GGG | 0.575709 | 4.3:-4411845 | MS.gene55815:CDS |
| CAGACGACAGGGACAAAGCA+TGG | 0.576125 | 4.3:-4411735 | MS.gene55815:CDS |
| GGTGGCCTATAAAGGCATAC+AGG | 0.580795 | 4.3:-4411793 | MS.gene55815:CDS |
| GAGAAAGGATGCAATGGTGA+GGG | 0.581838 | 4.3:-4411857 | MS.gene55815:CDS |
| AGACAATAGATACCTTGACT+TGG | 0.607021 | 4.3:+4411661 | None:intergenic |
| TGAGAAAGGATGCAATGGTG+AGG | 0.617666 | 4.3:-4411858 | MS.gene55815:CDS |
| GTTGGAGAGCATAGTGTGGG+AGG | 0.638611 | 4.3:+4412060 | None:intergenic |
| AACAGCGGTTGCAAAGCATG+TGG | 0.642827 | 4.3:-4411893 | MS.gene55815:intron |
| CTGTAACTGACTCCAAGTCA+AGG | 0.645140 | 4.3:-4411673 | MS.gene55815:intron |
| ACAGGGACAAAGCATGGACG+AGG | 0.654227 | 4.3:-4411729 | MS.gene55815:CDS |
| AGCCCTTTAATTGAACGTAG+AGG | 0.660275 | 4.3:+4411349 | None:intergenic |
| TGAACGTGATGATAATGTTG+AGG | 0.683199 | 4.3:+4412129 | None:intergenic |
| GAAGCCACAAATCCAGGACA+TGG | 0.686791 | 4.3:+4411770 | None:intergenic |
| GGTGGTAGGTACAGACGACA+GGG | 0.692150 | 4.3:-4411746 | MS.gene55815:CDS |
| CAGAATTCTCCACTAAACAG+AGG | 0.708713 | 4.3:-4411987 | MS.gene55815:intron |
| GGTGAGGGTAGGATGCAGGG+TGG | 0.740434 | 4.3:-4411842 | MS.gene55815:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAATAAAAAATA+GGG | + | chr4.3:4412048-4412067 | None:intergenic | 0.0% |
| !! | AAGATTTATCTATAAATAAA+TGG | + | chr4.3:4411899-4411918 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTATTTAATGAA+GGG | + | chr4.3:4411557-4411576 | None:intergenic | 10.0% |
| !! | CTTCATTAAATAAAAATCTT+TGG | - | chr4.3:4411556-4411575 | MS.gene55815:CDS | 15.0% |
| !!! | AAGATTTTTATTTAATGAAG+GGG | + | chr4.3:4411556-4411575 | None:intergenic | 15.0% |
| !!! | CAAAGATTTTTATTTAATGA+AGG | + | chr4.3:4411558-4411577 | None:intergenic | 15.0% |
| !! | TCTATAAATAAATGGTAAAC+TGG | + | chr4.3:4411891-4411910 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTATGTTGATAGA+AGG | - | chr4.3:4412009-4412028 | MS.gene55815:CDS | 20.0% |
| !!! | TTTTGTTTATGTTGATAGAA+GGG | - | chr4.3:4412010-4412029 | MS.gene55815:CDS | 20.0% |
| ! | TGTACAAACCAAAAAAATCA+TGG | - | chr4.3:4411400-4411419 | MS.gene55815:intron | 25.0% |
| ! | TTATTTAATGAAGGGGAAAA+TGG | + | chr4.3:4411549-4411568 | None:intergenic | 25.0% |
| !! | TTTGTTTATGTTGATAGAAG+GGG | - | chr4.3:4412011-4412030 | MS.gene55815:CDS | 25.0% |
| !!! | ATTTTTTATTTTGGTTCGCA+AGG | - | chr4.3:4412056-4412075 | MS.gene55815:CDS | 25.0% |
| !!! | CAAATGAGAAGGATTTTAAT+AGG | - | chr4.3:4411977-4411996 | MS.gene55815:intron | 25.0% |
| !!! | TTTTTTATTTTGGTTCGCAA+GGG | - | chr4.3:4412057-4412076 | MS.gene55815:CDS | 25.0% |
| CTTGATTCTAAGTCTTTCTT+AGG | - | chr4.3:4412129-4412148 | MS.gene55815:CDS | 30.0% | |
| TCTAGTTAGTTCAAATGAGA+AGG | - | chr4.3:4411966-4411985 | MS.gene55815:intron | 30.0% | |
| TGTCTCTTTCTCATGTATAT+GGG | - | chr4.3:4411861-4411880 | MS.gene55815:CDS | 30.0% | |
| TTGTCTCTTTCTCATGTATA+TGG | - | chr4.3:4411860-4411879 | MS.gene55815:CDS | 30.0% | |
| !!! | TGTTTTAATTTTGCCACTAC+CGG | + | chr4.3:4411807-4411826 | None:intergenic | 30.0% |
| !!! | TTTTTATTTTGGTTCGCAAG+GGG | - | chr4.3:4412058-4412077 | MS.gene55815:CDS | 30.0% |
| AGACAATAGATACCTTGACT+TGG | + | chr4.3:4411846-4411865 | None:intergenic | 35.0% | |
| CACCTCTACGTTCAATTAAA+GGG | - | chr4.3:4412153-4412172 | MS.gene55815:CDS | 35.0% | |
| GAAATTGAGAAAGGATGCAA+TGG | - | chr4.3:4411641-4411660 | MS.gene55815:intron | 35.0% | |
| GGAAACGAAGAAATTGAGAA+AGG | - | chr4.3:4411632-4411651 | MS.gene55815:intron | 35.0% | |
| GGAACAAATATCTTAGTAGC+TGG | + | chr4.3:4411426-4411445 | None:intergenic | 35.0% | |
| TCACCTCTACGTTCAATTAA+AGG | - | chr4.3:4412152-4412171 | MS.gene55815:CDS | 35.0% | |
| TTAATGAAGGGGAAAATGGA+TGG | + | chr4.3:4411545-4411564 | None:intergenic | 35.0% | |
| ! | AAGCTGCATCAAGACTTTTA+AGG | - | chr4.3:4411942-4411961 | MS.gene55815:intron | 35.0% |
| ! | AGCTGCATCAAGACTTTTAA+GGG | - | chr4.3:4411943-4411962 | MS.gene55815:intron | 35.0% |
| ! | TGAACGTGATGATAATGTTG+AGG | + | chr4.3:4411378-4411397 | None:intergenic | 35.0% |
| ! | TGATGATAATGTTGAGGTGT+TGG | + | chr4.3:4411372-4411391 | None:intergenic | 35.0% |
| AGCCCTTTAATTGAACGTAG+AGG | + | chr4.3:4412158-4412177 | None:intergenic | 40.0% | |
| CAGAATTCTCCACTAAACAG+AGG | - | chr4.3:4411517-4411536 | MS.gene55815:intron | 40.0% | |
| GAAACAGCAAGTTCATCATC+TGG | + | chr4.3:4411489-4411508 | None:intergenic | 40.0% | |
| GCAGAAGAAATGAGTGAAGT+TGG | + | chr4.3:4411465-4411484 | None:intergenic | 40.0% | |
| TTTGAGTAGTTGCTGAACAG+CGG | - | chr4.3:4411596-4411615 | MS.gene55815:intron | 40.0% | |
| !!! | GTAGCTGGCCATGATTTTTT+TGG | + | chr4.3:4411411-4411430 | None:intergenic | 40.0% |
| ATTGCAACAGTTCCTGGCTT+TGG | - | chr4.3:4411686-4411705 | MS.gene55815:CDS | 45.0% | |
| CATGGCCTGTATGCCTTTAT+AGG | + | chr4.3:4411719-4411738 | None:intergenic | 45.0% | |
| GACTTGGAGTCAGTTACAGT+TGG | + | chr4.3:4411830-4411849 | None:intergenic | 45.0% | |
| GAGAAAGGATGCAATGGTGA+GGG | - | chr4.3:4411647-4411666 | MS.gene55815:intron | 45.0% | |
| TGAGAAAGGATGCAATGGTG+AGG | - | chr4.3:4411646-4411665 | MS.gene55815:intron | 45.0% | |
| TGGATGGTACCTCTGTTTAG+TGG | + | chr4.3:4411529-4411548 | None:intergenic | 45.0% | |
| ! | CTGTAACTGACTCCAAGTCA+AGG | - | chr4.3:4411831-4411850 | MS.gene55815:CDS | 45.0% |
| ! | GAAGTTGGAGAGCATAGTGT+GGG | + | chr4.3:4411450-4411469 | None:intergenic | 45.0% |
| ! | TGAAGTTGGAGAGCATAGTG+TGG | + | chr4.3:4411451-4411470 | None:intergenic | 45.0% |
| !! | CAAAATAAAAAATAAAAAAT+AGG | + | chr4.3:4412049-4412068 | None:intergenic | 5.0% |
| !!! | CTATTTTTTATTTTTTATTT+TGG | - | chr4.3:4412047-4412066 | MS.gene55815:CDS | 5.0% |
| AACAGCGGTTGCAAAGCATG+TGG | - | chr4.3:4411611-4411630 | MS.gene55815:intron | 50.0% | |
| AAGGATGCAATGGTGAGGGT+AGG | - | chr4.3:4411651-4411670 | MS.gene55815:intron | 50.0% | |
| AATGGTGAGGGTAGGATGCA+GGG | - | chr4.3:4411659-4411678 | MS.gene55815:intron | 50.0% | |
| CTTTGGCTGGTGGCCTATAA+AGG | - | chr4.3:4411703-4411722 | MS.gene55815:CDS | 50.0% | |
| GAAGCCACAAATCCAGGACA+TGG | + | chr4.3:4411737-4411756 | None:intergenic | 50.0% | |
| GATTTGTGGCTTCTGGTGGT+AGG | - | chr4.3:4411744-4411763 | MS.gene55815:CDS | 50.0% | |
| GGTGGTATTGCAACAGTTCC+TGG | - | chr4.3:4411680-4411699 | MS.gene55815:CDS | 50.0% | |
| TGTCCTGGATTTGTGGCTTC+TGG | - | chr4.3:4411737-4411756 | MS.gene55815:CDS | 50.0% | |
| ! | GGTGGCCTATAAAGGCATAC+AGG | - | chr4.3:4411711-4411730 | MS.gene55815:CDS | 50.0% |
| AAGGCATACAGGCCATGTCC+TGG | - | chr4.3:4411722-4411741 | MS.gene55815:CDS | 55.0% | |
| ACAGGGACAAAGCATGGACG+AGG | - | chr4.3:4411775-4411794 | MS.gene55815:CDS | 55.0% | |
| AGCATGGACGAGGTTGTCTC+CGG | - | chr4.3:4411785-4411804 | MS.gene55815:CDS | 55.0% | |
| CAATGGTGAGGGTAGGATGC+AGG | - | chr4.3:4411658-4411677 | MS.gene55815:intron | 55.0% | |
| CAGACGACAGGGACAAAGCA+TGG | - | chr4.3:4411769-4411788 | MS.gene55815:CDS | 55.0% | |
| CAGGCCATGTCCTGGATTTG+TGG | - | chr4.3:4411730-4411749 | MS.gene55815:CDS | 55.0% | |
| CCACCAGAAGCCACAAATCC+AGG | + | chr4.3:4411743-4411762 | None:intergenic | 55.0% | |
| CCTGGATTTGTGGCTTCTGG+TGG | - | chr4.3:4411740-4411759 | MS.gene55815:CDS | 55.0% | |
| GGTGGTAGGTACAGACGACA+GGG | - | chr4.3:4411758-4411777 | MS.gene55815:CDS | 55.0% | |
| TGGTGGTAGGTACAGACGAC+AGG | - | chr4.3:4411757-4411776 | MS.gene55815:CDS | 55.0% | |
| ! | GTTGGAGAGCATAGTGTGGG+AGG | + | chr4.3:4411447-4411466 | None:intergenic | 55.0% |
| !! | CAACAGTTCCTGGCTTTGGC+TGG | - | chr4.3:4411690-4411709 | MS.gene55815:CDS | 55.0% |
| ATAGGCCACCAGCCAAAGCC+AGG | + | chr4.3:4411701-4411720 | None:intergenic | 60.0% | |
| GACGAGGTTGTCTCCGGTAG+TGG | - | chr4.3:4411791-4411810 | MS.gene55815:CDS | 60.0% | |
| !! | CAGTTCCTGGCTTTGGCTGG+TGG | - | chr4.3:4411693-4411712 | MS.gene55815:CDS | 60.0% |
| GGTGAGGGTAGGATGCAGGG+TGG | - | chr4.3:4411662-4411681 | MS.gene55815:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4411345 | 4412181 | 4411345 | ID=MS.gene55815 |
| chr4.3 | mRNA | 4411345 | 4412181 | 4411345 | ID=MS.gene55815.t1;Parent=MS.gene55815 |
| chr4.3 | exon | 4411988 | 4412181 | 4411988 | ID=MS.gene55815.t1.exon1;Parent=MS.gene55815.t1 |
| chr4.3 | CDS | 4411988 | 4412181 | 4411988 | ID=cds.MS.gene55815.t1;Parent=MS.gene55815.t1 |
| chr4.3 | exon | 4411674 | 4411910 | 4411674 | ID=MS.gene55815.t1.exon2;Parent=MS.gene55815.t1 |
| chr4.3 | CDS | 4411674 | 4411910 | 4411674 | ID=cds.MS.gene55815.t1;Parent=MS.gene55815.t1 |
| chr4.3 | exon | 4411528 | 4411581 | 4411528 | ID=MS.gene55815.t1.exon3;Parent=MS.gene55815.t1 |
| chr4.3 | CDS | 4411528 | 4411581 | 4411528 | ID=cds.MS.gene55815.t1;Parent=MS.gene55815.t1 |
| chr4.3 | exon | 4411345 | 4411375 | 4411345 | ID=MS.gene55815.t1.exon4;Parent=MS.gene55815.t1 |
| chr4.3 | CDS | 4411345 | 4411375 | 4411345 | ID=cds.MS.gene55815.t1;Parent=MS.gene55815.t1 |
| Gene Sequence |
| Protein sequence |
