AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020841.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020841.01.T01 MTR_4g060990 60.440 273 6 5 1 257 1 187 1.09e-93 276
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020841.01.T01 AT5G59770 38.636 264 60 5 7 254 5 182 1.16e-45 153

Find 64 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTATGACACAGTATTTA+TGG 0.059784 4:+49483981 None:intergenic
TTATACCTAACTCATGTTTA+TGG 0.155216 4:-49484027 MsG0480020841.01.T01:CDS
TTTGTCCTTGCCATTGTTAA+TGG 0.212937 4:-49485145 MsG0480020841.01.T01:CDS
AGGAAATCATAATAACTAAA+TGG 0.223354 4:+49483450 None:intergenic
GAGAGACATTGTTGTTATTA+TGG 0.224465 4:+49485589 None:intergenic
TGACACAGTATTTATGGATT+TGG 0.245960 4:+49483987 None:intergenic
ATATTCTTCTCCTTTATAAT+TGG 0.246163 4:+49483498 None:intergenic
TCTACTAACTTTGATTCATT+GGG 0.249834 4:+49485676 None:intergenic
TTCTACTAACTTTGATTCAT+TGG 0.266010 4:+49485675 None:intergenic
TATCCTGTGGGAGTGTTTCC+TGG 0.286736 4:-49483694 MsG0480020841.01.T01:CDS
TACTGAGTACTGACTAATTA+AGG 0.334013 4:+49485433 None:intergenic
GCTTGGGAAACTGTCCTTCA+TGG 0.349823 4:-49483877 MsG0480020841.01.T01:CDS
GCACGGATACTCCTCGGATT+AGG 0.379796 4:+49484055 None:intergenic
CGTTGCTTCCTTTGATGCAA+TGG 0.387638 4:-49485183 MsG0480020841.01.T01:CDS
GTTGCTTCCTTTGATGCAAT+GGG 0.387839 4:-49485182 MsG0480020841.01.T01:CDS
TTCTTCTATAACCTCACTCT+TGG 0.399199 4:-49483381 MsG0480020841.01.T01:CDS
GCATTATGCTTTCAGTTGCT+TGG 0.401661 4:-49483894 MsG0480020841.01.T01:CDS
CATTATGCTTTCAGTTGCTT+GGG 0.402222 4:-49483893 MsG0480020841.01.T01:CDS
CTTCATGGATCACCTATATC+AGG 0.406322 4:-49483862 MsG0480020841.01.T01:CDS
CCAGGCGCTTCCAATTATAA+AGG 0.426455 4:-49483508 MsG0480020841.01.T01:CDS
CTCTCCACTTCCTCCATCAC+TGG 0.426494 4:-49485476 MsG0480020841.01.T01:CDS
GCATATAAAATGTTACCTTA+AGG 0.427519 4:+49483430 None:intergenic
TAGTTATTATGATTTCCTTA+AGG 0.432805 4:-49483445 MsG0480020841.01.T01:CDS
GGAAATCATAATAACTAAAT+GGG 0.435335 4:+49483451 None:intergenic
GTATACCATAAACATGAGTT+AGG 0.455867 4:+49484022 None:intergenic
CTTCCTCCCCATTGCATCAA+AGG 0.457528 4:+49485175 None:intergenic
CTTTGATGCAATGGGGAGGA+AGG 0.495138 4:-49485174 MsG0480020841.01.T01:CDS
CCTTTATAATTGGAAGCGCC+TGG 0.502979 4:+49483508 None:intergenic
AGTTCCAGTGATGGAGGAAG+TGG 0.507585 4:+49485472 None:intergenic
GTTTATTGTGATTTATCCTG+TGG 0.508886 4:-49483707 MsG0480020841.01.T01:CDS
AATCAAAGTTAGTAGAAGAG+AGG 0.511792 4:-49485669 MsG0480020841.01.T01:five_prime_UTR
TTCTATATTCTCCATAGTGA+TGG 0.516810 4:-49483821 MsG0480020841.01.T01:CDS
ACTAAATGGGAGGCTTGAAA+AGG 0.523268 4:+49483464 None:intergenic
TGCAGTATGGTTGATGTACC+AGG 0.524168 4:-49483526 MsG0480020841.01.T01:CDS
TATATGCAACTGATTAGTCA+TGG 0.539844 4:-49483414 MsG0480020841.01.T01:CDS
CATATGAACTCACTTTCTCC+AGG 0.542825 4:+49483676 None:intergenic
CTGATATAGGTGATCCATGA+AGG 0.545436 4:+49483863 None:intergenic
TTAGTCGATACAATGCAGTA+TGG 0.552449 4:-49483539 MsG0480020841.01.T01:CDS
AAAGGAAGCAACGCTCCGCT+CGG 0.561925 4:+49485193 None:intergenic
CTACTAACTTTGATTCATTG+GGG 0.563044 4:+49485677 None:intergenic
AGCATAAGTTCCAGTGATGG+AGG 0.564797 4:+49485466 None:intergenic
CCATAAATACTGTGTCATAG+AGG 0.568221 4:-49483981 MsG0480020841.01.T01:CDS
ACTGGAACTTATGCTTCTGC+CGG 0.569567 4:-49485458 MsG0480020841.01.T01:CDS
TTTATTGTGATTTATCCTGT+GGG 0.570256 4:-49483706 MsG0480020841.01.T01:CDS
ACTAACTTTGATTCATTGGG+GGG 0.572060 4:+49485679 None:intergenic
CATTGTTAATGGAATTCATG+AGG 0.578874 4:-49485134 MsG0480020841.01.T01:intron
GTACTGACTAATTAAGGTGC+CGG 0.579270 4:+49485439 None:intergenic
GAAGAGAGGAGAGAATCCAT+TGG 0.582790 4:-49485655 MsG0480020841.01.T01:five_prime_UTR
CTTGAAAAGAGTTGTAAGCA+AGG 0.590281 4:+49485543 None:intergenic
TACTAACTTTGATTCATTGG+GGG 0.591664 4:+49485678 None:intergenic
AATGAAGCACGGATACTCCT+CGG 0.596726 4:+49484049 None:intergenic
CTCATGAATTCCATTAACAA+TGG 0.598925 4:+49485135 None:intergenic
TGAGTCAATTTCCAAGAGTG+AGG 0.610214 4:+49483370 None:intergenic
TCTCCAGGAAACACTCCCAC+AGG 0.614332 4:+49483691 None:intergenic
CTTCCTTTGATGCAATGGGG+AGG 0.617578 4:-49485178 MsG0480020841.01.T01:CDS
GAATTCCATTAACAATGGCA+AGG 0.629089 4:+49485140 None:intergenic
AATCATAATAACTAAATGGG+AGG 0.632223 4:+49483454 None:intergenic
AGAAGCATAAGTTCCAGTGA+TGG 0.646845 4:+49485463 None:intergenic
ACCAGGACACGCCTAATCCG+AGG 0.651505 4:-49484066 MsG0480020841.01.T01:intron
TTGCTTCCTTTGATGCAATG+GGG 0.657708 4:-49485181 MsG0480020841.01.T01:CDS
AGTTAGGTATAAATGAAGCA+CGG 0.672465 4:+49484038 None:intergenic
TCTTGCGTGGAGTATAGGCG+AGG 0.684008 4:-49484820 MsG0480020841.01.T01:intron
ATTTCAGGACTGGTGCCGAG+CGG 0.729266 4:-49485208 MsG0480020841.01.T01:intron
AGGATAAATCACAATAAACG+CGG 0.753232 4:+49483711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAATAATCTAAACTAA+CGG + Chr4:49483978-49483997 None:intergenic 15.0%
!! GAAATATTGAATTAATGATT+AGG + Chr4:49483704-49483723 None:intergenic 15.0%
!! AAGCAAAAAAGAAAAAGAAA+AGG + Chr4:49484871-49484890 None:intergenic 20.0%
!! AGGAAATCATAATAACTAAA+TGG + Chr4:49485615-49485634 None:intergenic 20.0%
!! AGGTAATTATTCAATTGAAT+TGG - Chr4:49484262-49484281 MsG0480020841.01.T01:intron 20.0%
!! ATATTCTTCTCCTTTATAAT+TGG + Chr4:49485567-49485586 None:intergenic 20.0%
!! CTAATAATCAAAAGATAAAG+AGG + Chr4:49485326-49485345 None:intergenic 20.0%
!! GGAAATCATAATAACTAAAT+GGG + Chr4:49485614-49485633 None:intergenic 20.0%
!! TAGTTATTATGATTTCCTTA+AGG - Chr4:49485617-49485636 MsG0480020841.01.T01:five_prime_UTR 20.0%
!! TATGACTTATATTCAGAAAT+TGG - Chr4:49484306-49484325 MsG0480020841.01.T01:intron 20.0%
!!! CTCTTTATCTTTTGATTATT+AGG - Chr4:49485324-49485343 MsG0480020841.01.T01:intron 20.0%
! AAACAAAACTTAACGATAAG+AGG + Chr4:49485422-49485441 None:intergenic 25.0%
! AAATTTCAACTACAGTTAGA+AGG + Chr4:49483813-49483832 None:intergenic 25.0%
! AACAAAACTTAACGATAAGA+GGG + Chr4:49485421-49485440 None:intergenic 25.0%
! AATCATAATAACTAAATGGG+AGG + Chr4:49485611-49485630 None:intergenic 25.0%
! ACTTATATTCAGAAATTGGT+TGG - Chr4:49484310-49484329 MsG0480020841.01.T01:intron 25.0%
! ATTCAATATTTCATCGTTGA+AGG - Chr4:49483712-49483731 MsG0480020841.01.T01:CDS 25.0%
! GCAATATCCATATAATAGAA+TGG + Chr4:49483956-49483975 None:intergenic 25.0%
! GCATATAAAATGTTACCTTA+AGG + Chr4:49485635-49485654 None:intergenic 25.0%
! TATTCATCAAGGAGAAAAAA+AGG - Chr4:49484634-49484653 MsG0480020841.01.T01:intron 25.0%
! TCTACTAACTTTGATTCATT+GGG + Chr4:49483389-49483408 None:intergenic 25.0%
! TTATACCTAACTCATGTTTA+TGG - Chr4:49485035-49485054 MsG0480020841.01.T01:intron 25.0%
! TTCTACTAACTTTGATTCAT+TGG + Chr4:49483390-49483409 None:intergenic 25.0%
! TTTATTGTGATTTATCCTGT+GGG - Chr4:49485356-49485375 MsG0480020841.01.T01:intron 25.0%
!! TTTTCTCGAATTATTAACAG+TGG + Chr4:49484938-49484957 None:intergenic 25.0%
!!! ATCAGAAGTATTTATACGAT+AGG - Chr4:49484094-49484113 MsG0480020841.01.T01:intron 25.0%
!!! GTAGTTTTTCAATTATCCAA+TGG + Chr4:49484397-49484416 None:intergenic 25.0%
!!! TGTATCTGTTATTTTAGAGT+TGG - Chr4:49484499-49484518 MsG0480020841.01.T01:intron 25.0%
AACAGTTTAAACAGAAAGCA+AGG + Chr4:49484555-49484574 None:intergenic 30.0%
AACTGTTAATGTAACTCTTC+TGG - Chr4:49484135-49484154 MsG0480020841.01.T01:intron 30.0%
AATCAAAGTTAGTAGAAGAG+AGG - Chr4:49483393-49483412 MsG0480020841.01.T01:CDS 30.0%
AGGATAAATCACAATAAACG+CGG + Chr4:49485354-49485373 None:intergenic 30.0%
AGTTAGGTATAAATGAAGCA+CGG + Chr4:49485027-49485046 None:intergenic 30.0%
CAAGTCTTGAAATGAATTTC+AGG - Chr4:49483839-49483858 MsG0480020841.01.T01:CDS 30.0%
CAATTTATGATAAGCAGTGT+TGG - Chr4:49484598-49484617 MsG0480020841.01.T01:intron 30.0%
CATTGTTAATGGAATTCATG+AGG - Chr4:49483928-49483947 MsG0480020841.01.T01:CDS 30.0%
CGCAAGAAAAGTGATAAAAA+CGG + Chr4:49484229-49484248 None:intergenic 30.0%
CTACTAACTTTGATTCATTG+GGG + Chr4:49483388-49483407 None:intergenic 30.0%
CTCATGAATTCCATTAACAA+TGG + Chr4:49483930-49483949 None:intergenic 30.0%
GATAGAAAAATGCCTGATAT+AGG + Chr4:49485215-49485234 None:intergenic 30.0%
GCAAGAAAAGTGATAAAAAC+GGG + Chr4:49484228-49484247 None:intergenic 30.0%
GCATTCTTAGAAGTTATACA+CGG - Chr4:49483751-49483770 MsG0480020841.01.T01:intron 30.0%
GTATACCATAAACATGAGTT+AGG + Chr4:49485043-49485062 None:intergenic 30.0%
GTTTATTGTGATTTATCCTG+TGG - Chr4:49485355-49485374 MsG0480020841.01.T01:intron 30.0%
TACTAACTTTGATTCATTGG+GGG + Chr4:49483387-49483406 None:intergenic 30.0%
TACTCTATATCTCTAACCAT+TGG - Chr4:49484378-49484397 MsG0480020841.01.T01:intron 30.0%
TGACACAGTATTTATGGATT+TGG + Chr4:49485078-49485097 None:intergenic 30.0%
TGAGGTTCCATTCTATTATA+TGG - Chr4:49483946-49483965 MsG0480020841.01.T01:CDS 30.0%
TTAGGTACTCATATTCATCA+AGG - Chr4:49484623-49484642 MsG0480020841.01.T01:intron 30.0%
TTCTATATTCTCCATAGTGA+TGG - Chr4:49485241-49485260 MsG0480020841.01.T01:intron 30.0%
! ATTCTCTAAAAACAAGGGAA+GGG + Chr4:49484816-49484835 None:intergenic 30.0%
! CTGACATTCTCTAAAAACAA+GGG + Chr4:49484821-49484840 None:intergenic 30.0%
! GAGAGACATTGTTGTTATTA+TGG + Chr4:49483476-49483495 None:intergenic 30.0%
! GATGATTTTGCTTCAATCTT+TGG - Chr4:49485123-49485142 MsG0480020841.01.T01:intron 30.0%
! TATATGCAACTGATTAGTCA+TGG - Chr4:49485648-49485667 MsG0480020841.01.T01:five_prime_UTR 30.0%
!! TACAACTCTTTTCAAGCAAT+TGG - Chr4:49483526-49483545 MsG0480020841.01.T01:CDS 30.0%
!! TACTGAGTACTGACTAATTA+AGG + Chr4:49483632-49483651 None:intergenic 30.0%
!! TTTTTATCACTTTTCTTGCG+TGG - Chr4:49484229-49484248 MsG0480020841.01.T01:intron 30.0%
AATTCTCTAACTCGTGTCTT+TGG - Chr4:49484170-49484189 MsG0480020841.01.T01:intron 35.0%
ACTAACTTTGATTCATTGGG+GGG + Chr4:49483386-49483405 None:intergenic 35.0%
AGAAAAGTGATAAAAACGGG+AGG + Chr4:49484225-49484244 None:intergenic 35.0%
AGATACAAAAAAACGCAGAC+AGG + Chr4:49484486-49484505 None:intergenic 35.0%
ATGACAGTAAAACCTACCAA+TGG + Chr4:49483779-49483798 None:intergenic 35.0%
CATTATGCTTTCAGTTGCTT+GGG - Chr4:49485169-49485188 MsG0480020841.01.T01:CDS 35.0%
CCATAAATACTGTGTCATAG+AGG - Chr4:49485081-49485100 MsG0480020841.01.T01:intron 35.0%
CCTCTATGACACAGTATTTA+TGG + Chr4:49485084-49485103 None:intergenic 35.0%
CTTGAAAAGAGTTGTAAGCA+AGG + Chr4:49483522-49483541 None:intergenic 35.0%
CTTGAAATGAATTTCAGGAC+TGG - Chr4:49483844-49483863 MsG0480020841.01.T01:CDS 35.0%
GAATTCCATTAACAATGGCA+AGG + Chr4:49483925-49483944 None:intergenic 35.0%
GGAATACATACGATTGATCA+TGG + Chr4:49484465-49484484 None:intergenic 35.0%
TACATCAGACACTATACTGT+CGG - Chr4:49484414-49484433 MsG0480020841.01.T01:intron 35.0%
TCTCGAATTATTAACAGTGG+CGG + Chr4:49484935-49484954 None:intergenic 35.0%
TTAAACAGAAAGCAAGGTCA+AGG + Chr4:49484549-49484568 None:intergenic 35.0%
TTAGTCGATACAATGCAGTA+TGG - Chr4:49485523-49485542 MsG0480020841.01.T01:CDS 35.0%
TTCTTCTATAACCTCACTCT+TGG - Chr4:49485681-49485700 MsG0480020841.01.T01:five_prime_UTR 35.0%
TTTGTCCTTGCCATTGTTAA+TGG - Chr4:49483917-49483936 MsG0480020841.01.T01:CDS 35.0%
! CATTCTCTAAAAACAAGGGA+AGG + Chr4:49484817-49484836 None:intergenic 35.0%
! CCTGACATTCTCTAAAAACA+AGG + Chr4:49484822-49484841 None:intergenic 35.0%
! TCCATAGTGATGGAAAAATG+AGG - Chr4:49485251-49485270 MsG0480020841.01.T01:intron 35.0%
! TTAATGATTAGGAGTGTGTG+AGG + Chr4:49483693-49483712 None:intergenic 35.0%
! TTCTCTAAAAACAAGGGAAG+GGG + Chr4:49484815-49484834 None:intergenic 35.0%
! TTGATGCATCTTGATGACAT+AGG - Chr4:49484012-49484031 MsG0480020841.01.T01:CDS 35.0%
!! ACCTCATTTTTCCATCACTA+TGG + Chr4:49485255-49485274 None:intergenic 35.0%
!! ACTCTTTTCAAGCAATTGGA+TGG - Chr4:49483530-49483549 MsG0480020841.01.T01:CDS 35.0%
!! CCATTGGTGTTTTGTGAAAA+AGG - Chr4:49483423-49483442 MsG0480020841.01.T01:CDS 35.0%
!! CCTTTTTCACAAAACACCAA+TGG + Chr4:49483426-49483445 None:intergenic 35.0%
!!! CCTTGTTTTTAGAGAATGTC+AGG - Chr4:49484819-49484838 MsG0480020841.01.T01:intron 35.0%
AACCTCACTCTTGGAAATTG+AGG - Chr4:49485690-49485709 MsG0480020841.01.T01:five_prime_UTR 40.0%
ACTAAATGGGAGGCTTGAAA+AGG + Chr4:49485601-49485620 None:intergenic 40.0%
CATATGAACTCACTTTCTCC+AGG + Chr4:49485389-49485408 None:intergenic 40.0%
CTGATATAGGTGATCCATGA+AGG + Chr4:49485202-49485221 None:intergenic 40.0%
CTTCATGGATCACCTATATC+AGG - Chr4:49485200-49485219 MsG0480020841.01.T01:CDS 40.0%
GCATTATGCTTTCAGTTGCT+TGG - Chr4:49485168-49485187 MsG0480020841.01.T01:CDS 40.0%
GTTGCTTCCTTTGATGCAAT+GGG - Chr4:49483880-49483899 MsG0480020841.01.T01:CDS 40.0%
TTGCTTCCTTTGATGCAATG+GGG - Chr4:49483881-49483900 MsG0480020841.01.T01:CDS 40.0%
! ACTTTTCTTGCGTGGAGTAT+AGG - Chr4:49484237-49484256 MsG0480020841.01.T01:intron 40.0%
! AGAAGCATAAGTTCCAGTGA+TGG + Chr4:49483602-49483621 None:intergenic 40.0%
! TGATAAGCAGTGTTGGAGTT+AGG - Chr4:49484605-49484624 MsG0480020841.01.T01:intron 40.0%
!! GTACTGACTAATTAAGGTGC+CGG + Chr4:49483626-49483645 None:intergenic 40.0%
AACTTTGATTCATTGGGGGG+AGG + Chr4:49483383-49483402 None:intergenic 45.0%
AATGAAGCACGGATACTCCT+CGG + Chr4:49485016-49485035 None:intergenic 45.0%
ACAAGGGAAGGGGTTTGTAA+AGG + Chr4:49484805-49484824 None:intergenic 45.0%
ACTGGAACTTATGCTTCTGC+CGG - Chr4:49483604-49483623 MsG0480020841.01.T01:intron 45.0%
AGCATAAGTTCCAGTGATGG+AGG + Chr4:49483599-49483618 None:intergenic 45.0%
CAAGGGAAGGGGTTTGTAAA+GGG + Chr4:49484804-49484823 None:intergenic 45.0%
CCAGGCGCTTCCAATTATAA+AGG - Chr4:49485554-49485573 MsG0480020841.01.T01:CDS 45.0%
CGTTGCTTCCTTTGATGCAA+TGG - Chr4:49483879-49483898 MsG0480020841.01.T01:CDS 45.0%
GAAGAGAGGAGAGAATCCAT+TGG - Chr4:49483407-49483426 MsG0480020841.01.T01:CDS 45.0%
TAAAAACGGGAGGTAACTCC+TGG + Chr4:49484215-49484234 None:intergenic 45.0%
TGCTTATACCCTACGAAGCA+CGG - Chr4:49484886-49484905 MsG0480020841.01.T01:intron 45.0%
TTTGGTTGAGTGCTTTCTCC+AGG - Chr4:49484188-49484207 MsG0480020841.01.T01:intron 45.0%
! TGCAGTATGGTTGATGTACC+AGG - Chr4:49485536-49485555 MsG0480020841.01.T01:CDS 45.0%
!! CCTTTATAATTGGAAGCGCC+TGG + Chr4:49485557-49485576 None:intergenic 45.0%
!! GAAGTTATACACGGTGCCAT+TGG - Chr4:49483760-49483779 MsG0480020841.01.T01:intron 45.0%
!! TTATACACGGTGCCATTGGT+AGG - Chr4:49483764-49483783 MsG0480020841.01.T01:intron 45.0%
CACTATACTGTCGGAGACGT+AGG - Chr4:49484423-49484442 MsG0480020841.01.T01:intron 50.0%
CTTCCTCCCCATTGCATCAA+AGG + Chr4:49483890-49483909 None:intergenic 50.0%
CTTCCTTTGATGCAATGGGG+AGG - Chr4:49483884-49483903 MsG0480020841.01.T01:CDS 50.0%
CTTTGATGCAATGGGGAGGA+AGG - Chr4:49483888-49483907 MsG0480020841.01.T01:CDS 50.0%
GCTTGGGAAACTGTCCTTCA+TGG - Chr4:49485185-49485204 MsG0480020841.01.T01:CDS 50.0%
TACCCTACGAAGCACGGATA+CGG - Chr4:49484892-49484911 MsG0480020841.01.T01:intron 50.0%
TATGTGACATGTCCGACACC+AGG - Chr4:49484979-49484998 MsG0480020841.01.T01:intron 50.0%
TTTGATTCATTGGGGGGAGG+TGG + Chr4:49483380-49483399 None:intergenic 50.0%
! AGTTCCAGTGATGGAGGAAG+TGG + Chr4:49483593-49483612 None:intergenic 50.0%
!! TATCCTGTGGGAGTGTTTCC+TGG - Chr4:49485368-49485387 MsG0480020841.01.T01:intron 50.0%
AAAGGAAGCAACGCTCCGCT+CGG + Chr4:49483872-49483891 None:intergenic 55.0%
ACGAAGCACGGATACGGACA+TGG - Chr4:49484898-49484917 MsG0480020841.01.T01:intron 55.0%
CTCTCCACTTCCTCCATCAC+TGG - Chr4:49483586-49483605 MsG0480020841.01.T01:intron 55.0%
GATTAGGCGTGTCCTGGTGT+CGG + Chr4:49484994-49485013 None:intergenic 55.0%
GCACGGATACTCCTCGGATT+AGG + Chr4:49485010-49485029 None:intergenic 55.0%
GTCCGTATCCGTGCTTCGTA+GGG + Chr4:49484897-49484916 None:intergenic 55.0%
GTCGGAGACGTAGGCACAAT+TGG - Chr4:49484432-49484451 MsG0480020841.01.T01:intron 55.0%
TCTCCAGGAAACACTCCCAC+AGG + Chr4:49485374-49485393 None:intergenic 55.0%
TCTTGCGTGGAGTATAGGCG+AGG - Chr4:49484242-49484261 MsG0480020841.01.T01:intron 55.0%
TGAGTGCTTTCTCCAGGTCC+AGG - Chr4:49484194-49484213 MsG0480020841.01.T01:intron 55.0%
TGTCCGTATCCGTGCTTCGT+AGG + Chr4:49484898-49484917 None:intergenic 55.0%
! ATTTCAGGACTGGTGCCGAG+CGG - Chr4:49483854-49483873 MsG0480020841.01.T01:CDS 55.0%
ACCAGGACACGCCTAATCCG+AGG - Chr4:49484996-49485015 MsG0480020841.01.T01:intron 60.0%
! TCCTCGGATTAGGCGTGTCC+TGG + Chr4:49485000-49485019 None:intergenic 60.0%
CGGGAGGTAACTCCTGGACC+TGG + Chr4:49484209-49484228 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 49483374 49485710 49483374 ID=MsG0480020841.01;Name=MsG0480020841.01
Chr4 mRNA 49483374 49485710 49483374 ID=MsG0480020841.01.T01;Parent=MsG0480020841.01;Name=MsG0480020841.01.T01;_AED=0.50;_eAED=0.63;_QI=113|0.2|0.66|1|0|0|6|0|278
Chr4 exon 49483374 49483594 49483374 ID=MsG0480020841.01.T01:exon:803;Parent=MsG0480020841.01.T01
Chr4 exon 49483689 49483738 49483689 ID=MsG0480020841.01.T01:exon:802;Parent=MsG0480020841.01.T01
Chr4 exon 49483812 49484083 49483812 ID=MsG0480020841.01.T01:exon:801;Parent=MsG0480020841.01.T01
Chr4 exon 49484821 49484874 49484821 ID=MsG0480020841.01.T01:exon:800;Parent=MsG0480020841.01.T01
Chr4 exon 49485135 49485223 49485135 ID=MsG0480020841.01.T01:exon:799;Parent=MsG0480020841.01.T01
Chr4 exon 49485447 49485710 49485447 ID=MsG0480020841.01.T01:exon:798;Parent=MsG0480020841.01.T01
Chr4 five_prime_UTR 49485598 49485710 49485598 ID=MsG0480020841.01.T01:five_prime_utr;Parent=MsG0480020841.01.T01
Chr4 CDS 49485447 49485597 49485447 ID=MsG0480020841.01.T01:cds;Parent=MsG0480020841.01.T01
Chr4 CDS 49485135 49485223 49485135 ID=MsG0480020841.01.T01:cds;Parent=MsG0480020841.01.T01
Chr4 CDS 49484821 49484874 49484821 ID=MsG0480020841.01.T01:cds;Parent=MsG0480020841.01.T01
Chr4 CDS 49483812 49484083 49483812 ID=MsG0480020841.01.T01:cds;Parent=MsG0480020841.01.T01
Chr4 CDS 49483689 49483738 49483689 ID=MsG0480020841.01.T01:cds;Parent=MsG0480020841.01.T01
Chr4 CDS 49483374 49483594 49483374 ID=MsG0480020841.01.T01:cds;Parent=MsG0480020841.01.T01
Gene Sequence

>MsG0480020841.01.T01

ATGTCTCTCAAACTATCAACAACACTTTATCTCCTTGCTTACAACTCTTTTCAAGCAATTGGATGGTTCGTATCATTAATCATCATTTTGTACAATCTTCTCTCCACTTCCTCCATCACTGGAACTTATGCTTCTGCCGGCACCTTAATTAGACTGGTGCCGAGCGGAGCGTTGCTTCCTTTGATGCAATGGGGAGGAAGGACTCACTTTGTCCTTGCCATTGTTAATGGAATTCATGAGGTCCAGGAGTTACCTCCCGTTTTTATCACTTTTCTTGCGTGGAGTATAGGCGAGGACACGCCTAATCCGAGGAGTATCCGTGCTTCATTTATACCTAACTCATGTTTATGGTATACTATGTTTACAATCCAAATCCATAAATACTGTGTCATAGAGGAATATAACATGACTTCAATGATGATTTTGCTTCAATCTTTGGAGATGCAGATCATTAGATATTCGCATTATGCTTTCAGTTGCTTGGGAAACTGTCCTTCATGGATCACCTATATCAGGCATTTTTCTATCTTACTATTCTATATTCTCCATAGTGATGGAAAAATGAGGTACACCGCGTTTATTGTGATTTATCCTGTGGGAGTGTTTCCTGGAGAAATATTATCAACATTTCATAAACTAGTGCAACTGATTAGTCGATACAATGCAGTATGGTTGATGTACCAGGCGCTTCCAATTATAAAGGAGAAGAATATCTATGCAGATTCCTTTTCAAGCCTCCCATTTAGTTATTATGATTTCCTTAAGGTAACATTTTATATGCAACTGATTAGTCATGGCGATTGTTTGTTCTTCTATAACCTCACTCTTGGAAATTGA

Protein sequence

>MsG0480020841.01.T01

MSLKLSTTLYLLAYNSFQAIGWFVSLIIILYNLLSTSSITGTYASAGTLIRLVPSGALLPLMQWGGRTHFVLAIVNGIHEVQELPPVFITFLAWSIGEDTPNPRSIRASFIPNSCLWYTMFTIQIHKYCVIEEYNMTSMMILLQSLEMQIIRYSHYAFSCLGNCPSWITYIRHFSILLFYILHSDGKMRYTAFIVIYPVGVFPGEILSTFHKLVQLISRYNAVWLMYQALPIIKEKNIYADSFSSLPFSYYDFLKVTFYMQLISHGDCLFFYNLTLGN*