AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005471.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005471.01.T01 MTR_1g100727 95.495 222 8 1 1 222 1 220 6.40e-155 428
MsG0180005471.01.T01 MTR_6g054890 67.234 235 60 4 3 222 2 234 1.21e-104 301
MsG0180005471.01.T01 MTR_6g027160 49.068 161 70 3 19 171 17 173 1.54e-46 152
MsG0180005471.01.T01 MTR_3g105860 54.639 97 44 0 75 171 2 98 4.03e-33 115
MsG0180005471.01.T01 MTR_3g081290 38.542 96 59 0 76 171 35 130 6.23e-17 77.0
MsG0180005471.01.T01 MTR_6g027060 53.333 60 28 0 110 169 27 86 1.28e-16 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005471.01.T01 AT3G48890 66.667 210 62 4 5 213 4 206 2.48e-91 268
MsG0180005471.01.T01 AT5G52240 61.161 224 77 4 3 222 2 219 9.14e-88 258
MsG0180005471.01.T01 AT5G52240 72.093 172 44 2 3 172 2 171 4.09e-86 253
MsG0180005471.01.T01 AT2G24940 50.515 97 48 0 75 171 2 98 1.67e-29 106
MsG0180005471.01.T01 AT4G14965 30.921 152 82 2 20 171 9 137 6.30e-17 77.4
MsG0180005471.01.T01 AT4G14965 39.759 83 50 0 76 158 42 124 1.25e-15 72.8

Find 104 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGTTTACTACGTCCTTTC+TGG 0.101868 1:+92204472 MsG0180005471.01.T01:CDS
ACCCTTGCTTATGGCTATTA+AGG 0.124798 1:+92204645 MsG0180005471.01.T01:CDS
CTCTTGGAAGTTGCGGGATT+GGG 0.149394 1:-92204527 None:intergenic
GATTTGACCGGTGATATTTC+TGG 0.252823 1:+92206245 MsG0180005471.01.T01:CDS
AGGCGATGATGGACTCCTTT+AGG 0.261253 1:-92204399 None:intergenic
ACCGGTGATATTTCTGGTCT+TGG 0.268409 1:+92206251 MsG0180005471.01.T01:CDS
GGCGATGATGGACTCCTTTA+GGG 0.276975 1:-92204398 None:intergenic
TACGTCCTTTCTGGTCTCTT+TGG 0.279840 1:+92204481 MsG0180005471.01.T01:CDS
AATGAATTGTGCATTGCTTT+AGG 0.287607 1:+92206852 MsG0180005471.01.T01:three_prime_UTR
ATTTGAGCTTGACGCGTTAC+AGG 0.301755 1:+92206277 MsG0180005471.01.T01:CDS
CCTCTTGGAAGTTGCGGGAT+TGG 0.303689 1:-92204528 None:intergenic
GGACTGGGAATACAAGTTTA+TGG 0.304869 1:+92206298 MsG0180005471.01.T01:CDS
CTCCTCCTCTTGGAAGTTGC+GGG 0.307440 1:-92204533 None:intergenic
TTTCAAATAGAAGATAATTC+CGG 0.309932 1:-92206945 None:intergenic
GTGGATTCAGCTTCAGTAAC+TGG 0.310617 1:-92206353 None:intergenic
ATTGCTTTAGGCTTTGTATA+AGG 0.316757 1:+92206864 MsG0180005471.01.T01:three_prime_UTR
CCCTTGCTTATGGCTATTAA+GGG 0.325886 1:+92204646 MsG0180005471.01.T01:CDS
GGACCGTATGCTTTATTTGC+TGG 0.331470 1:+92206176 MsG0180005471.01.T01:CDS
TCATGATAAACCCTTGCTTA+TGG 0.362127 1:+92204636 MsG0180005471.01.T01:CDS
TTGCTTTAGGCTTTGTATAA+GGG 0.365443 1:+92206865 MsG0180005471.01.T01:three_prime_UTR
TTCAAATAGAAGATAATTCC+GGG 0.371972 1:-92206944 None:intergenic
TTAGGCTTTGTATAAGGGTT+AGG 0.374113 1:+92206870 MsG0180005471.01.T01:three_prime_UTR
ATGACATTCGAGTCATATCT+TGG 0.380964 1:+92206733 MsG0180005471.01.T01:three_prime_UTR
AAAGCAATGCACAATTCATT+AGG 0.394703 1:-92206849 None:intergenic
TTATCTGCCTCAACATTTGA+AGG 0.394915 1:-92206473 None:intergenic
AGCTTGACGCGTTACAGGAC+TGG 0.403993 1:+92206282 MsG0180005471.01.T01:CDS
GTGATTTCACCTAGCTGAAC+AGG 0.406413 1:-92204580 None:intergenic
GACCACTTTCTTCACCATCT+TGG 0.410349 1:+92204438 MsG0180005471.01.T01:CDS
TCTTCTATTTGAAATTCAAC+TGG 0.410712 1:+92206954 MsG0180005471.01.T01:three_prime_UTR
TCTTGGAAGTTGCGGGATTG+GGG 0.417269 1:-92204526 None:intergenic
TGTAACGCGTCAAGCTCAAA+TGG 0.428078 1:-92206275 None:intergenic
AGCATTGCGTTATTCAATCA+AGG 0.430578 1:-92206781 None:intergenic
GTGGTGAATTGAAAATTTAG+TGG 0.436624 1:+92206911 MsG0180005471.01.T01:three_prime_UTR
CGATGGCCGGCGTTCAGCTG+TGG 0.449798 1:+92204371 MsG0180005471.01.T01:exon
TAGGAGGGAACGGAAGGGCT+TGG 0.461649 1:+92206889 MsG0180005471.01.T01:three_prime_UTR
GGCTTTGTATAAGGGTTAGG+AGG 0.465084 1:+92206873 MsG0180005471.01.T01:three_prime_UTR
TAGACCGGTGTAGGCGATGA+TGG 0.470054 1:-92204410 None:intergenic
ATAAGCCTTGAGCTCTTCTT+CGG 0.471949 1:-92204602 None:intergenic
GTTTATGGAGAAGTATGTTA+AGG 0.473963 1:+92206313 MsG0180005471.01.T01:CDS
GCAAATCAACAGTGCATAAG+TGG 0.476063 1:-92206593 None:intergenic
TGGTATCAAATATGTTAGTA+AGG 0.476257 1:+92206974 MsG0180005471.01.T01:three_prime_UTR
ACCAGAAAGGACGTAGTAAA+CGG 0.488478 1:-92204473 None:intergenic
CCTCCTCCTCTTGGAAGTTG+CGG 0.490295 1:-92204534 None:intergenic
TTTAGTGGATTTCTTCTCCC+CGG 0.503688 1:+92206926 MsG0180005471.01.T01:three_prime_UTR
GTATGCTTTATTTGCTGGCA+AGG 0.504997 1:+92206181 MsG0180005471.01.T01:CDS
TTGTTTGTTTGTCTACTCAC+TGG 0.507764 1:-92204270 None:intergenic
GAGGGAACGGAAGGGCTTGG+TGG 0.518739 1:+92206892 MsG0180005471.01.T01:three_prime_UTR
TATCTGCCTCAACATTTGAA+GGG 0.520292 1:-92206472 None:intergenic
GGCAAATAGAAGAGCCAAGA+TGG 0.520312 1:-92204452 None:intergenic
TGACATTCGAGTCATATCTT+GGG 0.520384 1:+92206734 MsG0180005471.01.T01:three_prime_UTR
AAGGGTTAGGAGGGAACGGA+AGG 0.521051 1:+92206883 MsG0180005471.01.T01:three_prime_UTR
GAGAGAGAGACTGAAGGAGG+AGG 0.523941 1:-92204307 None:intergenic
GCTTGACGCGTTACAGGACT+GGG 0.526300 1:+92206283 MsG0180005471.01.T01:CDS
GAAAGTGGTCGGAGATAGAC+CGG 0.532113 1:-92204425 None:intergenic
TCTATGATGTCTCTCAGAGC+AGG 0.537470 1:+92204674 MsG0180005471.01.T01:CDS
ATCAACAGTGCATAAGTGGC+AGG 0.540032 1:-92206589 None:intergenic
GAATCCACGGATGAACCATC+AGG 0.540069 1:+92206368 MsG0180005471.01.T01:CDS
TTTGATCCGCCATCTTCAGT+TGG 0.541409 1:-92206422 None:intergenic
TCATATCTTGGGCTGAGTAG+TGG 0.544652 1:+92206745 MsG0180005471.01.T01:three_prime_UTR
ACACAACAACGAGCGATGGC+CGG 0.545483 1:+92204358 MsG0180005471.01.T01:exon
GATGGCCGGCGTTCAGCTGT+GGG 0.545916 1:+92204372 MsG0180005471.01.T01:exon
GTATAAGGGTTAGGAGGGAA+CGG 0.548244 1:+92206879 MsG0180005471.01.T01:three_prime_UTR
GAAGAGCTCAAGGCTTATGA+TGG 0.549967 1:+92204607 MsG0180005471.01.T01:CDS
TTTGATGAGAAAGATTTGAC+CGG 0.550185 1:+92206233 MsG0180005471.01.T01:CDS
GCTTTGTATAAGGGTTAGGA+GGG 0.551553 1:+92206874 MsG0180005471.01.T01:three_prime_UTR
CAACTTCCAAGAGGAGGAGG+AGG 0.556609 1:+92204537 MsG0180005471.01.T01:CDS
ATCTGCCTCAACATTTGAAG+GGG 0.560772 1:-92206471 None:intergenic
GCTGTTAATCCAACTGAAGA+TGG 0.564157 1:+92206413 MsG0180005471.01.T01:CDS
TCAGCTGTGGGAAACCCTAA+AGG 0.566475 1:+92204384 MsG0180005471.01.T01:CDS
GTAACGCGTCAAGCTCAAAT+GGG 0.568003 1:-92206274 None:intergenic
AGTAGCCAAAGAGACCAGAA+AGG 0.568870 1:-92204486 None:intergenic
CCGCAACTTCCAAGAGGAGG+AGG 0.571017 1:+92204534 MsG0180005471.01.T01:CDS
CTTGGAAGTTGCGGGATTGG+GGG 0.575348 1:-92204525 None:intergenic
TTGCCAGCAAATAAAGCATA+CGG 0.582093 1:-92206179 None:intergenic
ATGGAGAAGTATGTTAAGGT+CGG 0.585025 1:+92206317 MsG0180005471.01.T01:CDS
GGTCGGAGATAGACCGGTGT+AGG 0.586223 1:-92204419 None:intergenic
ACCCTTAATAGCCATAAGCA+AGG 0.587630 1:-92204647 None:intergenic
AATAAAGCATACGGTCCACC+CGG 0.588408 1:-92206170 None:intergenic
CCCTTAATAGCCATAAGCAA+GGG 0.597837 1:-92204646 None:intergenic
GGTTTCCCACAGCTGAACGC+CGG 0.599948 1:-92204377 None:intergenic
GAGTCCATCATCGCCTACAC+CGG 0.603823 1:+92204406 MsG0180005471.01.T01:CDS
TGAACAGGTGGTCGGAGAGG+TGG 0.609555 1:-92204565 None:intergenic
CACCTAGCTGAACAGGTGGT+CGG 0.610497 1:-92204573 None:intergenic
CTCCGACCACCTGTTCAGCT+AGG 0.610888 1:+92204571 MsG0180005471.01.T01:CDS
AGCTGAACAGGTGGTCGGAG+AGG 0.612379 1:-92204568 None:intergenic
ACCTGCAGCTGTTAAAAGTG+AGG 0.614328 1:+92206445 MsG0180005471.01.T01:CDS
ATCCCGCAACTTCCAAGAGG+AGG 0.616485 1:+92204531 MsG0180005471.01.T01:CDS
AGCCAAGATGGTGAAGAAAG+TGG 0.619359 1:-92204440 None:intergenic
GGAAACCCCTTCAAATGTTG+AGG 0.619610 1:+92206466 MsG0180005471.01.T01:CDS
AGGGTTAGGAGGGAACGGAA+GGG 0.627173 1:+92206884 MsG0180005471.01.T01:three_prime_UTR
AGTTACTGAAGCTGAATCCA+CGG 0.632921 1:+92206355 MsG0180005471.01.T01:CDS
AATCACCGAAGAAGAGCTCA+AGG 0.634309 1:+92204597 MsG0180005471.01.T01:CDS
TAACACACAACAACGAGCGA+TGG 0.637257 1:+92204354 MsG0180005471.01.T01:exon
AGATCCTGATGGTTCATCCG+TGG 0.641894 1:-92206372 None:intergenic
AAGATGGTGAAGAAAGTGGT+CGG 0.644524 1:-92204436 None:intergenic
GCCAAGACCAGAAATATCAC+CGG 0.647612 1:-92206252 None:intergenic
TAAGTAATGAAATGTAGTGG+TGG 0.655345 1:+92206639 MsG0180005471.01.T01:three_prime_UTR
TCACGAGGAGTAGATCCTGA+TGG 0.661127 1:-92206383 None:intergenic
TCAAATAGAAGATAATTCCG+GGG 0.672326 1:-92206943 None:intergenic
GTTAATCCAACTGAAGATGG+CGG 0.680061 1:+92206416 MsG0180005471.01.T01:CDS
ATTTCACCTAGCTGAACAGG+TGG 0.686884 1:-92204577 None:intergenic
TGATAAGTAATGAAATGTAG+TGG 0.693508 1:+92206636 MsG0180005471.01.T01:three_prime_UTR
CCAATCCCGCAACTTCCAAG+AGG 0.696455 1:+92204528 MsG0180005471.01.T01:CDS
TTAACAGCATCAACATCACG+AGG 0.728477 1:-92206398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTTTATTACAAAAATAA+TGG + Chr1:92206698-92206717 MsG0180005471.01.T01:three_prime_UTR 10.0%
!! AATATACACATAATAGTTAA+TGG - Chr1:92205301-92205320 None:intergenic 15.0%
!! TATTACTTTATTCTGATATA+AGG + Chr1:92205251-92205270 MsG0180005471.01.T01:intron 15.0%
!! TTATATTCTTATCTAAACTT+TGG + Chr1:92204774-92204793 MsG0180005471.01.T01:intron 15.0%
!!! ACATTTTCTCAAATTATTAT+TGG + Chr1:92205082-92205101 MsG0180005471.01.T01:intron 15.0%
!! AAAGTAAAGTGATTTATGTT+TGG + Chr1:92204844-92204863 MsG0180005471.01.T01:intron 20.0%
!! CAAAATTAATTATGCTCAAA+AGG + Chr1:92204956-92204975 MsG0180005471.01.T01:intron 20.0%
!! TACACTAAGTTTATGATATA+AGG + Chr1:92205218-92205237 MsG0180005471.01.T01:intron 20.0%
!! TCTAACTTGAAGTTAAAATT+TGG + Chr1:92205843-92205862 MsG0180005471.01.T01:intron 20.0%
!! TTTCAAATAGAAGATAATTC+CGG - Chr1:92206948-92206967 None:intergenic 20.0%
!!! GAATTGATTTTTAACATGTT+TGG + Chr1:92205790-92205809 MsG0180005471.01.T01:intron 20.0%
! AAAAACAAATGAAACACCAA+AGG - Chr1:92205653-92205672 None:intergenic 25.0%
! AAAACAAATGAAACACCAAA+GGG - Chr1:92205652-92205671 None:intergenic 25.0%
! AAAACAGAAGCTAAGAAAAA+AGG - Chr1:92204711-92204730 None:intergenic 25.0%
! AAACAGAAGCTAAGAAAAAA+GGG - Chr1:92204710-92204729 None:intergenic 25.0%
! AATAATCTGTTTATCCAAAC+AGG + Chr1:92205567-92205586 MsG0180005471.01.T01:intron 25.0%
! AGATCATAATAAATAGAGAG+AGG - Chr1:92206119-92206138 None:intergenic 25.0%
! ATAAGACTTTGTATCTACTT+AGG - Chr1:92205594-92205613 None:intergenic 25.0%
! GAATACTTTCATACAAAAGT+GGG - Chr1:92205917-92205936 None:intergenic 25.0%
! GATCATAATAAATAGAGAGA+GGG - Chr1:92206118-92206137 None:intergenic 25.0%
! TAAGACTTTGTATCTACTTA+GGG - Chr1:92205593-92205612 None:intergenic 25.0%
! TAATTATGACTTCTGCAAAA+GGG - Chr1:92204750-92204769 None:intergenic 25.0%
! TATGTGTATATTTGCATGTT+TGG + Chr1:92205309-92205328 MsG0180005471.01.T01:intron 25.0%
! TCATAAACTTAGTGTATGTT+TGG - Chr1:92205214-92205233 None:intergenic 25.0%
! TCATAATTCAGTGTAATCAT+AGG - Chr1:92205063-92205082 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+GGG + Chr1:92205088-92205107 MsG0180005471.01.T01:intron 25.0%
! TGAATACTTTCATACAAAAG+TGG - Chr1:92205918-92205937 None:intergenic 25.0%
! TGATAAGTAATGAAATGTAG+TGG + Chr1:92206636-92206655 MsG0180005471.01.T01:three_prime_UTR 25.0%
! TGGTATCAAATATGTTAGTA+AGG + Chr1:92206974-92206993 MsG0180005471.01.T01:three_prime_UTR 25.0%
! TTAATTATGACTTCTGCAAA+AGG - Chr1:92204751-92204770 None:intergenic 25.0%
! TTCAAATAGAAGATAATTCC+GGG - Chr1:92206947-92206966 None:intergenic 25.0%
! TTCTCAAATTATTATTGGTG+TGG + Chr1:92205087-92205106 MsG0180005471.01.T01:intron 25.0%
!! TCTTCTATTTGAAATTCAAC+TGG + Chr1:92206954-92206973 MsG0180005471.01.T01:three_prime_UTR 25.0%
!!! AAGTTAAAATTTGGAGCTTT+TGG + Chr1:92205852-92205871 MsG0180005471.01.T01:intron 25.0%
!!! TATGCTTTTAAGTGTATGTT+TGG + Chr1:92205726-92205745 MsG0180005471.01.T01:intron 25.0%
!!! TTGATTTGTAAGATTGATTC+TGG - Chr1:92205959-92205978 None:intergenic 25.0%
!!! TTTTGATAATTATGTGTCCA+TGG + Chr1:92205275-92205294 MsG0180005471.01.T01:intron 25.0%
AAAAACTGAGCAAAAATGTC+AGG + Chr1:92206543-92206562 MsG0180005471.01.T01:three_prime_UTR 30.0%
AAAGCAATGCACAATTCATT+AGG - Chr1:92206852-92206871 None:intergenic 30.0%
AATGAATTGTGCATTGCTTT+AGG + Chr1:92206852-92206871 MsG0180005471.01.T01:three_prime_UTR 30.0%
CTACTAACATAAATTGAGAC+TGG + Chr1:92205352-92205371 MsG0180005471.01.T01:intron 30.0%
CTAGTCAAAATAGATTATCG+AGG + Chr1:92205763-92205782 MsG0180005471.01.T01:intron 30.0%
GTGGTGAATTGAAAATTTAG+TGG + Chr1:92206911-92206930 MsG0180005471.01.T01:three_prime_UTR 30.0%
TAAGTAATGAAATGTAGTGG+TGG + Chr1:92206639-92206658 MsG0180005471.01.T01:three_prime_UTR 30.0%
TCAAATAGAAGATAATTCCG+GGG - Chr1:92206946-92206965 None:intergenic 30.0%
TTTGATGAGAAAGATTTGAC+CGG + Chr1:92206233-92206252 MsG0180005471.01.T01:CDS 30.0%
! AGAATTGATTCTGACATGTT+TGG - Chr1:92205153-92205172 None:intergenic 30.0%
! ATTGCTTTAGGCTTTGTATA+AGG + Chr1:92206864-92206883 MsG0180005471.01.T01:three_prime_UTR 30.0%
! CTTCACCTTCAAATCAATTT+TGG + Chr1:92205171-92205190 MsG0180005471.01.T01:intron 30.0%
! GTTTATGGAGAAGTATGTTA+AGG + Chr1:92206313-92206332 MsG0180005471.01.T01:CDS 30.0%
! TTGCTTTAGGCTTTGTATAA+GGG + Chr1:92206865-92206884 MsG0180005471.01.T01:three_prime_UTR 30.0%
!! AATTGATTCTACCTAGCTTT+TGG - Chr1:92204929-92204948 None:intergenic 30.0%
!! CAAGTTTTCATAGTTAGTCT+AGG + Chr1:92206566-92206585 MsG0180005471.01.T01:three_prime_UTR 30.0%
AAAGATGCGCTTATGCTTAA+TGG - Chr1:92205626-92205645 None:intergenic 35.0%
AAGATGCGCTTATGCTTAAT+GGG - Chr1:92205625-92205644 None:intergenic 35.0%
AGCATTGCGTTATTCAATCA+AGG - Chr1:92206784-92206803 None:intergenic 35.0%
ATAGTCTAGCTGATCTAAAG+TGG - Chr1:92205707-92205726 None:intergenic 35.0%
ATGAAACACGAACACATACA+CGG - Chr1:92205117-92205136 None:intergenic 35.0%
ATGACATTCGAGTCATATCT+TGG + Chr1:92206733-92206752 MsG0180005471.01.T01:three_prime_UTR 35.0%
CAATTTCCAAGAAACTGAAG+TGG + Chr1:92206057-92206076 MsG0180005471.01.T01:intron 35.0%
CACATAATAGTTAATGGCCA+TGG - Chr1:92205295-92205314 None:intergenic 35.0%
CACTTCAGTTTCTTGGAAAT+TGG - Chr1:92206059-92206078 None:intergenic 35.0%
CTAGGTAGAATCAATTCTTG+AGG + Chr1:92204933-92204952 MsG0180005471.01.T01:intron 35.0%
CTTATTATGAGAAGAGCTTG+TGG + Chr1:92205533-92205552 MsG0180005471.01.T01:intron 35.0%
TATCTGCCTCAACATTTGAA+GGG - Chr1:92206475-92206494 None:intergenic 35.0%
TCATGATAAACCCTTGCTTA+TGG + Chr1:92204636-92204655 MsG0180005471.01.T01:CDS 35.0%
TGACATTCGAGTCATATCTT+GGG + Chr1:92206734-92206753 MsG0180005471.01.T01:three_prime_UTR 35.0%
TTATCTGCCTCAACATTTGA+AGG - Chr1:92206476-92206495 None:intergenic 35.0%
TTGCCAGCAAATAAAGCATA+CGG - Chr1:92206182-92206201 None:intergenic 35.0%
TTGTTGTAATGTTGTCTGCT+TGG + Chr1:92205671-92205690 MsG0180005471.01.T01:intron 35.0%
! ATGGAGAAGTATGTTAAGGT+CGG + Chr1:92206317-92206336 MsG0180005471.01.T01:CDS 35.0%
! TGGGTTGAACAACAAATTCA+AGG - Chr1:92205898-92205917 None:intergenic 35.0%
! TTAGGCTTTGTATAAGGGTT+AGG + Chr1:92206870-92206889 MsG0180005471.01.T01:three_prime_UTR 35.0%
!! CAATTCTAGAACCAAAAGCT+AGG + Chr1:92204915-92204934 MsG0180005471.01.T01:intron 35.0%
!!! AGTTTTTTCAGCAACTACTG+TGG - Chr1:92206530-92206549 None:intergenic 35.0%
AAGATGGTGAAGAAAGTGGT+CGG - Chr1:92204439-92204458 None:intergenic 40.0%
ACCAGAAAGGACGTAGTAAA+CGG - Chr1:92204476-92204495 None:intergenic 40.0%
ACCCTTAATAGCCATAAGCA+AGG - Chr1:92204650-92204669 None:intergenic 40.0%
ACCCTTGCTTATGGCTATTA+AGG + Chr1:92204645-92204664 MsG0180005471.01.T01:CDS 40.0%
AGATGCGCTTATGCTTAATG+GGG - Chr1:92205624-92205643 None:intergenic 40.0%
AGTTACTGAAGCTGAATCCA+CGG + Chr1:92206355-92206374 MsG0180005471.01.T01:CDS 40.0%
ATAAGCCTTGAGCTCTTCTT+CGG - Chr1:92204605-92204624 None:intergenic 40.0%
ATCTGCCTCAACATTTGAAG+GGG - Chr1:92206474-92206493 None:intergenic 40.0%
CCCTTAATAGCCATAAGCAA+GGG - Chr1:92204649-92204668 None:intergenic 40.0%
CCCTTGCTTATGGCTATTAA+GGG + Chr1:92204646-92204665 MsG0180005471.01.T01:CDS 40.0%
GATGTACCACTTCAGTTTCT+TGG - Chr1:92206066-92206085 None:intergenic 40.0%
GATTTGACCGGTGATATTTC+TGG + Chr1:92206245-92206264 MsG0180005471.01.T01:CDS 40.0%
GCAAATCAACAGTGCATAAG+TGG - Chr1:92206596-92206615 None:intergenic 40.0%
GCTGTTAATCCAACTGAAGA+TGG + Chr1:92206413-92206432 MsG0180005471.01.T01:CDS 40.0%
GCTTTGTATAAGGGTTAGGA+GGG + Chr1:92206874-92206893 MsG0180005471.01.T01:three_prime_UTR 40.0%
GGACTGGGAATACAAGTTTA+TGG + Chr1:92206298-92206317 MsG0180005471.01.T01:CDS 40.0%
GTTAATCCAACTGAAGATGG+CGG + Chr1:92206416-92206435 MsG0180005471.01.T01:CDS 40.0%
TTAACAGCATCAACATCACG+AGG - Chr1:92206401-92206420 None:intergenic 40.0%
! ATCTGTAATTGTGTCGTTCC+AGG + Chr1:92206135-92206154 MsG0180005471.01.T01:intron 40.0%
! TGTCGTTCCAGGATGTTTTA+TGG + Chr1:92206146-92206165 MsG0180005471.01.T01:intron 40.0%
! TTCCAGGATGTTTTATGGAC+CGG + Chr1:92206151-92206170 MsG0180005471.01.T01:intron 40.0%
!! AGGGGCCAAAATTGATTTGA+AGG - Chr1:92205179-92205198 None:intergenic 40.0%
!! GTATGCTTTATTTGCTGGCA+AGG + Chr1:92206181-92206200 MsG0180005471.01.T01:CDS 40.0%
!! TTTAGTGGATTTCTTCTCCC+CGG + Chr1:92206926-92206945 MsG0180005471.01.T01:three_prime_UTR 40.0%
AATAAAGCATACGGTCCACC+CGG - Chr1:92206173-92206192 None:intergenic 45.0%
AATCACCGAAGAAGAGCTCA+AGG + Chr1:92204597-92204616 MsG0180005471.01.T01:CDS 45.0%
ACCTGCAGCTGTTAAAAGTG+AGG + Chr1:92206445-92206464 MsG0180005471.01.T01:CDS 45.0%
AGCCAAGATGGTGAAGAAAG+TGG - Chr1:92204443-92204462 None:intergenic 45.0%
AGTAGCCAAAGAGACCAGAA+AGG - Chr1:92204489-92204508 None:intergenic 45.0%
ATCAACAGTGCATAAGTGGC+AGG - Chr1:92206592-92206611 None:intergenic 45.0%
ATTTCACCTAGCTGAACAGG+TGG - Chr1:92204580-92204599 None:intergenic 45.0%
ATTTGAGCTTGACGCGTTAC+AGG + Chr1:92206277-92206296 MsG0180005471.01.T01:CDS 45.0%
GAAGAGCTCAAGGCTTATGA+TGG + Chr1:92204607-92204626 MsG0180005471.01.T01:CDS 45.0%
GACCACTTTCTTCACCATCT+TGG + Chr1:92204438-92204457 MsG0180005471.01.T01:CDS 45.0%
GATGCGCTTATGCTTAATGG+GGG - Chr1:92205623-92205642 None:intergenic 45.0%
GCCAAGACCAGAAATATCAC+CGG - Chr1:92206255-92206274 None:intergenic 45.0%
GGAAACCCCTTCAAATGTTG+AGG + Chr1:92206466-92206485 MsG0180005471.01.T01:CDS 45.0%
GGCAAATAGAAGAGCCAAGA+TGG - Chr1:92204455-92204474 None:intergenic 45.0%
GTAACGCGTCAAGCTCAAAT+GGG - Chr1:92206277-92206296 None:intergenic 45.0%
GTATAAGGGTTAGGAGGGAA+CGG + Chr1:92206879-92206898 MsG0180005471.01.T01:three_prime_UTR 45.0%
GTATCTACTTAGGGCCTGTT+TGG - Chr1:92205584-92205603 None:intergenic 45.0%
GTGATTTCACCTAGCTGAAC+AGG - Chr1:92204583-92204602 None:intergenic 45.0%
GTGGATTCAGCTTCAGTAAC+TGG - Chr1:92206356-92206375 None:intergenic 45.0%
TAACACACAACAACGAGCGA+TGG + Chr1:92204354-92204373 MsG0180005471.01.T01:exon 45.0%
TCATATCTTGGGCTGAGTAG+TGG + Chr1:92206745-92206764 MsG0180005471.01.T01:three_prime_UTR 45.0%
TCTATGATGTCTCTCAGAGC+AGG + Chr1:92204674-92204693 MsG0180005471.01.T01:CDS 45.0%
TGTAACGCGTCAAGCTCAAA+TGG - Chr1:92206278-92206297 None:intergenic 45.0%
TGTGTGTGTGTGTGTGTGTT+TGG - Chr1:92205999-92206018 None:intergenic 45.0%
TTTGATCCGCCATCTTCAGT+TGG - Chr1:92206425-92206444 None:intergenic 45.0%
! AAGCGCATCTTTTGTCCCTT+TGG + Chr1:92205634-92205653 MsG0180005471.01.T01:intron 45.0%
! ACGAAAGCATAGACACTCCT+CGG + Chr1:92204980-92204999 MsG0180005471.01.T01:intron 45.0%
! GGCTTTGTATAAGGGTTAGG+AGG + Chr1:92206873-92206892 MsG0180005471.01.T01:three_prime_UTR 45.0%
! TACGTCCTTTCTGGTCTCTT+TGG + Chr1:92204481-92204500 MsG0180005471.01.T01:CDS 45.0%
! TCCAGGATGTTTTATGGACC+GGG + Chr1:92206152-92206171 MsG0180005471.01.T01:intron 45.0%
! TGTATGTTTGGTTCCGCTTC+TGG - Chr1:92205202-92205221 None:intergenic 45.0%
!! ACCGGTGATATTTCTGGTCT+TGG + Chr1:92206251-92206270 MsG0180005471.01.T01:CDS 45.0%
!! GGACCGTATGCTTTATTTGC+TGG + Chr1:92206176-92206195 MsG0180005471.01.T01:CDS 45.0%
!! TCCTCACTTTTAACAGCTGC+AGG - Chr1:92206449-92206468 None:intergenic 45.0%
!! TGTGTGTGTGTTTGGTTCTG+TGG - Chr1:92205991-92206010 None:intergenic 45.0%
ACACCAGGACACATAATCCG+AGG - Chr1:92205000-92205019 None:intergenic 50.0%
ACCCGGTCCATAAAACATCC+TGG - Chr1:92206156-92206175 None:intergenic 50.0%
ACTCCTCGGATTATGTGTCC+TGG + Chr1:92204994-92205013 MsG0180005471.01.T01:intron 50.0%
AGAGAGAGAGAGACTGAAGG+AGG - Chr1:92204313-92204332 None:intergenic 50.0%
AGATCCTGATGGTTCATCCG+TGG - Chr1:92206375-92206394 None:intergenic 50.0%
CGGATTATGTGTCCTGGTGT+TGG + Chr1:92205000-92205019 MsG0180005471.01.T01:intron 50.0%
CTCTTGGAAGTTGCGGGATT+GGG - Chr1:92204530-92204549 None:intergenic 50.0%
GAAAGTGGTCGGAGATAGAC+CGG - Chr1:92204428-92204447 None:intergenic 50.0%
GAATCCACGGATGAACCATC+AGG + Chr1:92206368-92206387 MsG0180005471.01.T01:CDS 50.0%
GAGAGAGAGAGAGAGACTGA+AGG - Chr1:92204316-92204335 None:intergenic 50.0%
GCCGTTTACTACGTCCTTTC+TGG + Chr1:92204472-92204491 MsG0180005471.01.T01:CDS 50.0%
TCACGAGGAGTAGATCCTGA+TGG - Chr1:92206386-92206405 None:intergenic 50.0%
TCAGCTGTGGGAAACCCTAA+AGG + Chr1:92204384-92204403 MsG0180005471.01.T01:CDS 50.0%
TCTTGGAAGTTGCGGGATTG+GGG - Chr1:92204529-92204548 None:intergenic 50.0%
! AGGATGTTTTATGGACCGGG+TGG + Chr1:92206155-92206174 MsG0180005471.01.T01:intron 50.0%
! ATGTTTGGTTCCGCTTCTGG+AGG - Chr1:92205199-92205218 None:intergenic 50.0%
! CGTGTCGATGTCAGACACTA+AGG - Chr1:92205031-92205050 None:intergenic 50.0%
! TGTTTGGTTCCGCTTCTGGA+GGG - Chr1:92205198-92205217 None:intergenic 50.0%
!! AATTTTGGCCCCTCCAGAAG+CGG + Chr1:92205186-92205205 MsG0180005471.01.T01:intron 50.0%
!! AGGCGATGATGGACTCCTTT+AGG - Chr1:92204402-92204421 None:intergenic 50.0%
!! GGCGATGATGGACTCCTTTA+GGG - Chr1:92204401-92204420 None:intergenic 50.0%
AAGGGTTAGGAGGGAACGGA+AGG + Chr1:92206883-92206902 MsG0180005471.01.T01:three_prime_UTR 55.0%
ACACAACAACGAGCGATGGC+CGG + Chr1:92204358-92204377 MsG0180005471.01.T01:exon 55.0%
ACTAAGGCGTGTCCAACACC+AGG - Chr1:92205015-92205034 None:intergenic 55.0%
AGCTTGACGCGTTACAGGAC+TGG + Chr1:92206282-92206301 MsG0180005471.01.T01:CDS 55.0%
AGGGTTAGGAGGGAACGGAA+GGG + Chr1:92206884-92206903 MsG0180005471.01.T01:three_prime_UTR 55.0%
ATCCCGCAACTTCCAAGAGG+AGG + Chr1:92204531-92204550 MsG0180005471.01.T01:CDS 55.0%
CAACTTCCAAGAGGAGGAGG+AGG + Chr1:92204537-92204556 MsG0180005471.01.T01:CDS 55.0%
CACCTAGCTGAACAGGTGGT+CGG - Chr1:92204576-92204595 None:intergenic 55.0%
CCAATCCCGCAACTTCCAAG+AGG + Chr1:92204528-92204547 MsG0180005471.01.T01:CDS 55.0%
CCTCCTCCTCTTGGAAGTTG+CGG - Chr1:92204537-92204556 None:intergenic 55.0%
CCTCTTGGAAGTTGCGGGAT+TGG - Chr1:92204531-92204550 None:intergenic 55.0%
CTCCTCCTCTTGGAAGTTGC+GGG - Chr1:92204536-92204555 None:intergenic 55.0%
CTTGGAAGTTGCGGGATTGG+GGG - Chr1:92204528-92204547 None:intergenic 55.0%
GAGAGAGAGACTGAAGGAGG+AGG - Chr1:92204310-92204329 None:intergenic 55.0%
GAGTCCATCATCGCCTACAC+CGG + Chr1:92204406-92204425 MsG0180005471.01.T01:CDS 55.0%
GCTTGACGCGTTACAGGACT+GGG + Chr1:92206283-92206302 MsG0180005471.01.T01:CDS 55.0%
TAGACCGGTGTAGGCGATGA+TGG - Chr1:92204413-92204432 None:intergenic 55.0%
! GTTTGGTTCCGCTTCTGGAG+GGG - Chr1:92205197-92205216 None:intergenic 55.0%
AGCTGAACAGGTGGTCGGAG+AGG - Chr1:92204571-92204590 None:intergenic 60.0%
AGTTGCGGGATTGGGGGTGA+AGG - Chr1:92204522-92204541 None:intergenic 60.0%
CCGCAACTTCCAAGAGGAGG+AGG + Chr1:92204534-92204553 MsG0180005471.01.T01:CDS 60.0%
CTCCGACCACCTGTTCAGCT+AGG + Chr1:92204571-92204590 MsG0180005471.01.T01:CDS 60.0%
GAAGCTCCTCCTCCTCCTCT+TGG - Chr1:92204546-92204565 None:intergenic 60.0%
GGTCGGAGATAGACCGGTGT+AGG - Chr1:92204422-92204441 None:intergenic 60.0%
GGTTTCCCACAGCTGAACGC+CGG - Chr1:92204380-92204399 None:intergenic 60.0%
TAGGAGGGAACGGAAGGGCT+TGG + Chr1:92206889-92206908 MsG0180005471.01.T01:three_prime_UTR 60.0%
TGAACAGGTGGTCGGAGAGG+TGG - Chr1:92204568-92204587 None:intergenic 60.0%
GAGGGAACGGAAGGGCTTGG+TGG + Chr1:92206892-92206911 MsG0180005471.01.T01:three_prime_UTR 65.0%
GATGGCCGGCGTTCAGCTGT+GGG + Chr1:92204372-92204391 MsG0180005471.01.T01:exon 65.0%
CGATGGCCGGCGTTCAGCTG+TGG + Chr1:92204371-92204390 MsG0180005471.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 92204272 92207001 92204272 ID=MsG0180005471.01;Name=MsG0180005471.01
Chr1 mRNA 92204272 92207001 92204272 ID=MsG0180005471.01.T01;Parent=MsG0180005471.01;Name=MsG0180005471.01.T01;_AED=0.28;_eAED=0.28;_QI=101|1|1|1|1|1|2|499|222
Chr1 exon 92204272 92204695 92204272 ID=MsG0180005471.01.T01:exon:9847;Parent=MsG0180005471.01.T01
Chr1 exon 92206157 92207001 92206157 ID=MsG0180005471.01.T01:exon:9848;Parent=MsG0180005471.01.T01
Chr1 five_prime_UTR 92204272 92204372 92204272 ID=MsG0180005471.01.T01:five_prime_utr;Parent=MsG0180005471.01.T01
Chr1 CDS 92204373 92204695 92204373 ID=MsG0180005471.01.T01:cds;Parent=MsG0180005471.01.T01
Chr1 CDS 92206157 92206502 92206157 ID=MsG0180005471.01.T01:cds;Parent=MsG0180005471.01.T01
Chr1 three_prime_UTR 92206503 92207001 92206503 ID=MsG0180005471.01.T01:three_prime_utr;Parent=MsG0180005471.01.T01
Gene Sequence

>MsG0180005471.01.T01

ATGGCCGGCGTTCAGCTGTGGGAAACCCTAAAGGAGTCCATCATCGCCTACACCGGTCTATCTCCGACCACTTTCTTCACCATCTTGGCTCTTCTATTTGCCGTTTACTACGTCCTTTCTGGTCTCTTTGGCTACTCTTCTTCTGACCTTCACCCCCAATCCCGCAACTTCCAAGAGGAGGAGGAGGAGCTTCCACCTCTCCGACCACCTGTTCAGCTAGGTGAAATCACCGAAGAAGAGCTCAAGGCTTATGATGGCAACGATCATGATAAACCCTTGCTTATGGCTATTAAGGGTCAGATCTATGATGTCTCTCAGAGCAGGATGTTTTATGGACCGGGTGGACCGTATGCTTTATTTGCTGGCAAGGATGCTAGTCGAGCATTAGCAAAGATGTCTTTTGATGAGAAAGATTTGACCGGTGATATTTCTGGTCTTGGCCCATTTGAGCTTGACGCGTTACAGGACTGGGAATACAAGTTTATGGAGAAGTATGTTAAGGTCGGAACTATTAAAAAGCCAGTTACTGAAGCTGAATCCACGGATGAACCATCAGGATCTACTCCTCGTGATGTTGATGCTGTTAATCCAACTGAAGATGGCGGATCAAAACCTGCAGCTGTTAAAAGTGAGGAAACCCCTTCAAATGTTGAGGCAGATAAAGAGTAA

Protein sequence

>MsG0180005471.01.T01

MAGVQLWETLKESIIAYTGLSPTTFFTILALLFAVYYVLSGLFGYSSSDLHPQSRNFQEEEEELPPLRPPVQLGEITEEELKAYDGNDHDKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFDEKDLTGDISGLGPFELDALQDWEYKFMEKYVKVGTIKKPVTEAESTDEPSGSTPRDVDAVNPTEDGGSKPAAVKSEETPSNVEADKE*