AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945520 MtrunA17_Chr1g0191941 89.303 402 41 1 79 480 7 406 0.0 731
Msa0945520 MtrunA17_Chr7g0272711 54.176 467 200 6 25 480 22 485 2.90e-162 468
Msa0945520 MtrunA17_Chr2g0296331 47.122 469 231 4 28 479 16 484 1.91e-147 430
Msa0945520 MtrunA17_Chr4g0066981 47.752 467 220 4 28 479 23 480 1.49e-142 417
Msa0945520 MtrunA17_Chr1g0191951 94.872 78 4 0 1 78 1 78 3.51e-47 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945520 AT1G09020.1 49.087 493 231 4 1 480 1 486 3.65e-157 455

Find 135 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATACTTCCAACGTGTTTA+AGG 0.148528 6_3:-24316156 Msa0945520:CDS
CCATTCCTCACTTGTTTGTT+TGG 0.213376 6_3:-24321831 Msa0945520:CDS
TGGCTCCTGTGTGGGATTCT+AGG 0.216648 6_3:-24318858 Msa0945520:CDS
GTTTAATGGTCACTTTCTTT+AGG 0.241162 6_3:-24315784 Msa0945520:three_prime_UTR
GTTCATATTTATATTAATTT+AGG 0.248545 6_3:+24322041 None:intergenic
CACTTGTTTGTTTGGCCTCA+TGG 0.250434 6_3:-24321823 Msa0945520:CDS
CACTTTCTTTAGGATGAAAT+TGG 0.252484 6_3:-24315774 Msa0945520:three_prime_UTR
ATACCAATTGTGGATGATTC+TGG 0.255262 6_3:-24316782 Msa0945520:CDS
CGTTGCAATTGGCTGTTTAT+TGG 0.259307 6_3:+24317025 None:intergenic
GTTCAATACCTTTGGGTAGA+TGG 0.263569 6_3:-24317067 Msa0945520:CDS
TTTCTATGCGGTTCTTTCAC+TGG 0.272488 6_3:-24321787 Msa0945520:CDS
ATGCTTTCAGGAAGTATCTT+TGG 0.275765 6_3:-24318878 Msa0945520:intron
AACTCAAGTTTCTTGTTGTT+TGG 0.276317 6_3:+24322280 None:intergenic
AAGCGTTTCAAGAACGATTA+TGG 0.296514 6_3:-24317119 Msa0945520:CDS
ATTGTTGGGTTAGTTTAGTT+TGG 0.300163 6_3:-24315846 Msa0945520:exon
ATGGAACGCTTTGCTAATTC+TGG 0.300906 6_3:-24316112 Msa0945520:intron
ACCGATTGGTTCAATACCTT+TGG 0.309132 6_3:-24317075 Msa0945520:CDS
GCATTGAATTTGAGACAAAT+TGG 0.317046 6_3:-24316196 Msa0945520:CDS
TACTGCTTCTCATTTGCTTC+CGG 0.327253 6_3:-24319210 Msa0945520:CDS
TCTCATTTGCTTCCGGAGTC+TGG 0.337135 6_3:-24319203 Msa0945520:CDS
AACAAGTGAGGAATGGAAAA+AGG 0.342501 6_3:+24321838 None:intergenic
GAATGGGAGGAAAACTGTTT+TGG 0.348653 6_3:-24315824 Msa0945520:three_prime_UTR
ATTAAGAAATAAATTAATCT+TGG 0.356672 6_3:-24315707 Msa0945520:three_prime_UTR
CAACAAGAAACTTGAGTTAG+AGG 0.358273 6_3:-24322275 Msa0945520:five_prime_UTR
GGCATCCCATGTAACATATA+TGG 0.360054 6_3:+24319937 None:intergenic
TGGGTTAGTTTAGTTTGGAA+TGG 0.379983 6_3:-24315841 Msa0945520:exon
CAGTAGCATGCATCCATATA+CGG 0.387731 6_3:-24322244 Msa0945520:five_prime_UTR
GAACGATTATGGTTCTTTGC+CGG 0.389922 6_3:-24317108 Msa0945520:CDS
CGCCACAGTGAACACTATTT+CGG 0.390725 6_3:-24319968 Msa0945520:CDS
GGGTTAGTTTAGTTTGGAAT+GGG 0.404174 6_3:-24315840 Msa0945520:exon
CCGATTGGTTCAATACCTTT+GGG 0.410101 6_3:-24317074 Msa0945520:CDS
GAGCAGCAGCCATTTATAAA+CGG 0.418064 6_3:-24319997 Msa0945520:CDS
AGCAGCAGCCATTTATAAAC+GGG 0.425365 6_3:-24319996 Msa0945520:CDS
CGAATTGAAGGCCGCCCGAC+TGG 0.426158 6_3:-24321331 Msa0945520:CDS
GCTGCAGGTAGAGGAGGAAA+TGG 0.428068 6_3:-24321895 Msa0945520:CDS
CCAATCGGTATTTGAAGAAC+CGG 0.430303 6_3:+24317089 None:intergenic
TTTGGCCTTAGCGTTGCAAT+TGG 0.432792 6_3:+24317014 None:intergenic
ATTGCATATTCTATATGAAC+AGG 0.444363 6_3:-24319042 Msa0945520:intron
TCTAGGAAGTGCAAGTTTGT+TGG 0.444547 6_3:-24318841 Msa0945520:CDS
AATGTGGAACTGATAGTAAT+GGG 0.445752 6_3:-24317518 Msa0945520:CDS
GGTTCATCAGCTGCAGGTAG+AGG 0.446142 6_3:-24321904 Msa0945520:CDS
TGATGTGTTCAAATTATTGT+TGG 0.453571 6_3:-24315861 Msa0945520:CDS
TTCAATACCTTTGGGTAGAT+GGG 0.455387 6_3:-24317066 Msa0945520:CDS
TTCTATGCGGTTCTTTCACT+GGG 0.457978 6_3:-24321786 Msa0945520:intron
TTACCAATGTCTCGAATTGA+AGG 0.465371 6_3:-24321343 Msa0945520:CDS
GCGGTGAACCCGTTTATAAA+TGG 0.465452 6_3:+24319988 None:intergenic
GGGTAGATGGGCGCCAAAAG+TGG 0.478271 6_3:-24317054 Msa0945520:CDS
AAGTCCTTCATCAGTAAAAG+TGG 0.478439 6_3:+24317584 None:intergenic
GAACCAGAATCATCCACAAT+TGG 0.479679 6_3:+24316779 None:intergenic
TTCAGTGCTTGAATAATGTC+CGG 0.484827 6_3:+24318805 None:intergenic
AGAGCAAACTCTGGTGTCCT+AGG 0.487042 6_3:+24319275 None:intergenic
TCACAGTGATCTTACTGCAT+TGG 0.488595 6_3:-24316655 Msa0945520:intron
GATCCCTTGCACACTCCTGC+AGG 0.489091 6_3:+24315895 None:intergenic
TAATTTGAACACATCACCTA+TGG 0.489576 6_3:+24315868 None:intergenic
GTTGTTTGCTACTTGACTCC+AGG 0.490524 6_3:-24321301 Msa0945520:CDS
GGTAGATGGGCGCCAAAAGT+GGG 0.495369 6_3:-24317053 Msa0945520:CDS
CCAAATACCGTATGAAATCC+TGG 0.498485 6_3:+24321283 None:intergenic
AGTATCTTTGGCTCCTGTGT+GGG 0.498993 6_3:-24318866 Msa0945520:CDS
CGATCCATTGCATGTGGTGA+TGG 0.505024 6_3:-24316131 Msa0945520:CDS
TATATGATGTATATTCAAGA+AGG 0.507403 6_3:-24316754 Msa0945520:intron
ATGCATTCTTCTTCCGAGGA+CGG 0.508228 6_3:-24317268 Msa0945520:CDS
CATTATTCAAGCACTGAAAG+AGG 0.510834 6_3:-24318800 Msa0945520:intron
GATGTGTTCAAATTATTGTT+GGG 0.510954 6_3:-24315860 Msa0945520:CDS
ATATTTATATTAATTTAGGC+AGG 0.512186 6_3:+24322045 None:intergenic
GAGAGATACTAAAATTATCC+AGG 0.512926 6_3:+24316604 None:intergenic
CAAATTGGAAAATGTCCTTA+CGG 0.513581 6_3:-24316181 Msa0945520:CDS
CCGGTTCTTCAAATACCGAT+TGG 0.514318 6_3:-24317089 Msa0945520:CDS
GCAGCACTAAGAGAAGCATT+TGG 0.515122 6_3:+24316996 None:intergenic
GTAATGGGAAAGCATATCCT+TGG 0.515149 6_3:-24317503 Msa0945520:CDS
CAATGTGGAACTGATAGTAA+TGG 0.515165 6_3:-24317519 Msa0945520:CDS
TGGTGGTGAAGTCTGCCTGC+AGG 0.517145 6_3:-24315910 Msa0945520:CDS
CGTTCCATCACCACATGCAA+TGG 0.521140 6_3:+24316127 None:intergenic
AAAGTGGATCGATGACTCTC+CGG 0.522520 6_3:+24317600 None:intergenic
TTAGTTTAGTTTGGAATGGG+AGG 0.524609 6_3:-24315837 Msa0945520:exon
TTTGCTTCCGGAGTCTGGCA+AGG 0.526888 6_3:-24319198 Msa0945520:intron
TGATTTGAGATTGAAATGTC+AGG 0.532626 6_3:-24321925 Msa0945520:exon
AGCTGCAGATGGGATCTACT+AGG 0.536186 6_3:+24319916 None:intergenic
CTGAGGAGTTGAGCCGTCCT+CGG 0.536297 6_3:+24317255 None:intergenic
TGCTACTAGCTAGTAATCAA+AGG 0.541349 6_3:-24321972 Msa0945520:five_prime_UTR
TGTTGGAGTGCTTAGTGCAC+CGG 0.541788 6_3:-24318824 Msa0945520:CDS
CCCAAAGGTATTGAACCAAT+CGG 0.545010 6_3:+24317074 None:intergenic
AAAGGTTGAGGATCAGGTAC+TGG 0.545680 6_3:+24321856 None:intergenic
AGTTAGCTCAATACCAATTG+TGG 0.548842 6_3:-24316792 Msa0945520:CDS
ATGTCTTCTAGTCTCTCAAA+AGG 0.548979 6_3:+24317334 None:intergenic
TATTATGCATTCTTCTTCCG+AGG 0.549168 6_3:-24317272 Msa0945520:CDS
TATCAAACCTTGCCAGACTC+CGG 0.549980 6_3:+24319191 None:intergenic
TTAGGATGAAATTGGAAGGA+GGG 0.550294 6_3:-24315766 Msa0945520:three_prime_UTR
AATGTATGCTAGGATAAGCC+TGG 0.551088 6_3:-24316622 Msa0945520:CDS
AAGTATCTTTGGCTCCTGTG+TGG 0.554132 6_3:-24318867 Msa0945520:CDS
ATGTCAGGTTCATCAGCTGC+AGG 0.555266 6_3:-24321910 Msa0945520:CDS
GCAGAACCATATATGTTACA+TGG 0.555752 6_3:-24319943 Msa0945520:CDS
AACAGCCAATTGCAACGCTA+AGG 0.557100 6_3:-24317019 Msa0945520:CDS
TTCTTTAGGATGAAATTGGA+AGG 0.559424 6_3:-24315770 Msa0945520:three_prime_UTR
TCTGCCTGCAGGAGTGTGCA+AGG 0.559432 6_3:-24315899 Msa0945520:CDS
GCTATCGCTCTAATGAATCA+AGG 0.560125 6_3:-24316975 Msa0945520:intron
CCAAACAAACAAGTGAGGAA+TGG 0.562084 6_3:+24321831 None:intergenic
TTTAGGATGAAATTGGAAGG+AGG 0.565109 6_3:-24315767 Msa0945520:three_prime_UTR
AAACAACTTGAAATCCAGTC+GGG 0.566738 6_3:+24321317 None:intergenic
GAATGCATAATAGCAACTAC+TGG 0.570220 6_3:+24317283 None:intergenic
CGGCCTTCAATTCGAGACAT+TGG 0.573549 6_3:+24321340 None:intergenic
TCATCAGCTGCAGGTAGAGG+AGG 0.573943 6_3:-24321901 Msa0945520:CDS
CTTGACTCCAGGATTTCATA+CGG 0.581995 6_3:-24321290 Msa0945520:intron
TACAGGTGTTGGAGAAGTTG+TGG 0.586664 6_3:-24315930 Msa0945520:intron
AGAAACATACTTTAGCAGCA+TGG 0.589951 6_3:-24317560 Msa0945520:CDS
GAGACATGCAGAGCAAACTC+TGG 0.590289 6_3:+24319266 None:intergenic
GTAGATGGGCGCCAAAAGTG+GGG 0.591294 6_3:-24317052 Msa0945520:CDS
CTAGATGTGAAATGTATGCT+AGG 0.597927 6_3:-24316632 Msa0945520:CDS
CACAGTGAACACTATTTCGG+TGG 0.598731 6_3:-24319965 Msa0945520:CDS
GAAGTCATATGTAGCAGCTG+AGG 0.600897 6_3:+24317238 None:intergenic
TTGCATTGTGAACTGTGCTA+TGG 0.602161 6_3:+24322095 None:intergenic
GTGCAAGGGATCATTTCCAT+AGG 0.609204 6_3:-24315884 Msa0945520:CDS
CAGAACCATATATGTTACAT+GGG 0.619520 6_3:-24319942 Msa0945520:CDS
CATCACCACATGCAATGGAT+CGG 0.619982 6_3:+24316132 None:intergenic
TAGATGGGCGCCAAAAGTGG+GGG 0.625100 6_3:-24317051 Msa0945520:CDS
GTTGGAAGTATAAGTCCGTA+AGG 0.626388 6_3:+24316166 None:intergenic
CTGCCTGCAGGAGTGTGCAA+GGG 0.626861 6_3:-24315898 Msa0945520:CDS
CAAACAACTTGAAATCCAGT+CGG 0.630864 6_3:+24321316 None:intergenic
AAGGTCCGATCCATTGCATG+TGG 0.637910 6_3:-24316137 Msa0945520:CDS
CGAAATAGTGTTCACTGTGG+CGG 0.638369 6_3:+24319969 None:intergenic
GAGAGAAAATTACAGCAATG+TGG 0.643369 6_3:-24317534 Msa0945520:CDS
AGTGAATGAAAATGAGACGT+AGG 0.645002 6_3:+24322142 None:intergenic
CTTACATCAACAAAACTCCA+AGG 0.646824 6_3:+24317486 None:intergenic
TTTGGCGCCCATCTACCCAA+AGG 0.652925 6_3:+24317059 None:intergenic
TTTGTGTGGATGGTGTGTGG+CGG 0.661221 6_3:-24320026 Msa0945520:CDS
TATTAATGTCACTAGACACA+TGG 0.669317 6_3:-24319887 Msa0945520:intron
GGATCGGACCTTAAACACGT+TGG 0.671025 6_3:+24316148 None:intergenic
CAACTTGAAATCCAGTCGGG+CGG 0.674400 6_3:+24321320 None:intergenic
GGTGAAACCGCGTTTCTATG+CGG 0.677368 6_3:-24321799 Msa0945520:CDS
TGAGGCCAAACAAACAAGTG+AGG 0.681158 6_3:+24321826 None:intergenic
TTGTTTGTTTGGCCTCATGG+AGG 0.688091 6_3:-24321820 Msa0945520:CDS
AGGTGTTGGAGAAGTTGTGG+TGG 0.695836 6_3:-24315927 Msa0945520:CDS
CACTTCCTAGAATCCCACAC+AGG 0.698640 6_3:+24318853 None:intergenic
GAAAGAACCGCATAGAAACG+CGG 0.713783 6_3:+24321792 None:intergenic
AACGCGGTTTCACCTCCATG+AGG 0.729601 6_3:+24321808 None:intergenic
CACCGAAATAGTGTTCACTG+TGG 0.763286 6_3:+24319966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTCATATTTATATTAATTT+AGG + chr6_3:24315966-24315985 None:intergenic 10.0%
!! AAGAACTAAAAAATATATAT+AGG - chr6_3:24318362-24318381 Msa0945520:intron 10.0%
!! AGAACTAAAAAATATATATA+GGG - chr6_3:24318363-24318382 Msa0945520:intron 10.0%
!!! AATTCTATTATCATTATTTT+AGG - chr6_3:24319456-24319475 Msa0945520:intron 10.0%
!! AAATATTAGAGATATTTATT+TGG - chr6_3:24319535-24319554 Msa0945520:intron 10.0%
!! AATATTAGAGATATTTATTT+GGG - chr6_3:24319536-24319555 Msa0945520:intron 10.0%
!! ATATAAATAAATATCCAAAA+TGG + chr6_3:24319639-24319658 None:intergenic 10.0%
!!! ATTTTGGATATTTATTTATA+TGG - chr6_3:24319638-24319657 Msa0945520:intron 10.0%
!!! AGATTATTTTAATATAATAC+GGG + chr6_3:24319878-24319897 None:intergenic 10.0%
!!! GAGATTATTTTAATATAATA+CGG + chr6_3:24319879-24319898 None:intergenic 10.0%
!!! TAAATTTTCTACTTAAAATT+GGG + chr6_3:24320588-24320607 None:intergenic 10.0%
!! ATACATTAAAATTAAAATAC+AGG - chr6_3:24322057-24322076 Msa0945520:five_prime_UTR 10.0%
!! ATTAAGAAATAAATTAATCT+TGG - chr6_3:24322297-24322316 Msa0945520:five_prime_UTR 10.0%
!! ATATTTATATTAATTTAGGC+AGG + chr6_3:24315962-24315981 None:intergenic 15.0%
!!! GATTTTAAAAATTCATATAG+AGG + chr6_3:24316747-24316766 None:intergenic 15.0%
!!! ATATGAATTTTTAAAATCTG+AGG - chr6_3:24316749-24316768 Msa0945520:intron 15.0%
!! AGATAAATGTTAATACAAAT+CGG - chr6_3:24317021-24317040 Msa0945520:CDS 15.0%
!! AATGAAAGTTTATTTACAAT+AGG + chr6_3:24317647-24317666 None:intergenic 15.0%
!!! TCAATAAAAGAAGAATTTTT+AGG + chr6_3:24318519-24318538 None:intergenic 15.0%
!! TAAAATATATATTGAACACA+AGG + chr6_3:24319097-24319116 None:intergenic 15.0%
!!! CTAAATATTTTTTACCATTT+AGG - chr6_3:24319381-24319400 Msa0945520:intron 15.0%
!! ATAATGATAATAGAATTCAA+TGG + chr6_3:24319453-24319472 None:intergenic 15.0%
!!! ATAGATTTTGTAAAAACAAA+TGG - chr6_3:24319912-24319931 Msa0945520:CDS 15.0%
!!! GTAAATTTTCTACTTAAAAT+TGG + chr6_3:24320589-24320608 None:intergenic 15.0%
!!! TATATTTATTTTTAATCTGC+AGG - chr6_3:24320642-24320661 Msa0945520:intron 15.0%
!! ATGTATAAATTTAATGCTAT+TGG + chr6_3:24321477-24321496 None:intergenic 15.0%
!! TTAAATTGAATATAAAGTGA+AGG - chr6_3:24321615-24321634 Msa0945520:intron 15.0%
!! GTTAAATTTCAATTAGTATA+AGG - chr6_3:24321648-24321667 Msa0945520:intron 15.0%
!! GTTAGACTAAATATATTTAT+CGG - chr6_3:24321725-24321744 Msa0945520:intron 15.0%
!! TTAGACTAAATATATTTATC+GGG - chr6_3:24321726-24321745 Msa0945520:intron 15.0%
!! TCTAGAAAATTATTTGAGTA+TGG - chr6_3:24316367-24316386 Msa0945520:intron 20.0%
!! CAAAAAAAAAACTTACCAAA+AGG + chr6_3:24316442-24316461 None:intergenic 20.0%
!! ATTGTATAGTTTATTCAACA+TGG - chr6_3:24316510-24316529 Msa0945520:intron 20.0%
!!! TGTTTTTGTACTATAATTTC+TGG - chr6_3:24317283-24317302 Msa0945520:CDS 20.0%
!! TAAATTTGAATCTACTCATT+TGG - chr6_3:24317856-24317875 Msa0945520:intron 20.0%
!! TAAAAATTGCATAATATGAG+AGG - chr6_3:24317918-24317937 Msa0945520:intron 20.0%
!! AAAAATTGCATAATATGAGA+GGG - chr6_3:24317919-24317938 Msa0945520:intron 20.0%
!! CTTAAGTGTGTTATATATAT+AGG - chr6_3:24318208-24318227 Msa0945520:intron 20.0%
!! AAAATATATATAGGGAGTTT+CGG - chr6_3:24318371-24318390 Msa0945520:intron 20.0%
!! TAAAAAAATTAATCGGTGAA+AGG - chr6_3:24318433-24318452 Msa0945520:intron 20.0%
!! AAAAAAATTAATCGGTGAAA+GGG - chr6_3:24318434-24318453 Msa0945520:intron 20.0%
!! AAACAATCATCAATTGAATA+AGG + chr6_3:24318469-24318488 None:intergenic 20.0%
!!! TATTCAATTGATGATTGTTT+TGG - chr6_3:24318469-24318488 Msa0945520:intron 20.0%
!!! TAAAAGAAGAATTTTTAGGA+GGG + chr6_3:24318515-24318534 None:intergenic 20.0%
!!! ATAAAAGAAGAATTTTTAGG+AGG + chr6_3:24318516-24318535 None:intergenic 20.0%
!! AAGAGAATATAAGAATAATC+AGG + chr6_3:24318603-24318622 None:intergenic 20.0%
!! GCATAAATTTCAATACTATA+AGG + chr6_3:24318661-24318680 None:intergenic 20.0%
!!! ATAGCAATTTATCTGATTTT+TGG - chr6_3:24318872-24318891 Msa0945520:intron 20.0%
!!! AATTTGCTTAAGATAATTTC+AGG - chr6_3:24318902-24318921 Msa0945520:intron 20.0%
!! TTAACTTAATATATGCTTTC+AGG - chr6_3:24319114-24319133 Msa0945520:intron 20.0%
!!! TAATTTCTTTTAACTTCACA+TGG + chr6_3:24319335-24319354 None:intergenic 20.0%
!! TGAAGTTAAAAGAAATTACA+AGG - chr6_3:24319337-24319356 Msa0945520:intron 20.0%
!! ATATTTAGCATAAATCAACT+TGG + chr6_3:24319369-24319388 None:intergenic 20.0%
!! ACTAATTAATTATGCCTAAA+TGG + chr6_3:24319398-24319417 None:intergenic 20.0%
!!! AATCAATCATTTTATGTAGT+AGG - chr6_3:24319484-24319503 Msa0945520:intron 20.0%
!! ATTTATTTATATGGTATGTC+TGG - chr6_3:24319647-24319666 Msa0945520:intron 20.0%
!! GTTATACTTCAATACATTAT+TGG - chr6_3:24319706-24319725 Msa0945520:intron 20.0%
!! GGAAAATAGAATAAAAGATA+AGG + chr6_3:24320108-24320127 None:intergenic 20.0%
!!! AATTTTTCTCATATGTGTTA+AGG + chr6_3:24320546-24320565 None:intergenic 20.0%
!!! TTTAAAATTTTTGCAATGCA+AGG - chr6_3:24320696-24320715 Msa0945520:intron 20.0%
!! TATATGATGTATATTCAAGA+AGG - chr6_3:24321250-24321269 Msa0945520:intron 20.0%
!!! TTTTTTTTTCTTTTTCCGTA+AGG - chr6_3:24321684-24321703 Msa0945520:intron 20.0%
!! TAAAATTAAAATACAGGTGT+TGG - chr6_3:24322063-24322082 Msa0945520:five_prime_UTR 20.0%
!!! CTTTGAAAAACTATGTTTAA+TGG - chr6_3:24322206-24322225 Msa0945520:five_prime_UTR 20.0%
!!! CTAGTTATCTATTTTATTTG+CGG - chr6_3:24322265-24322284 Msa0945520:five_prime_UTR 20.0%
!!! TGTTGTAGAGTTTTAGAAAA+CGG + chr6_3:24315834-24315853 None:intergenic 25.0%
!!! CTCAAATAATTTTCTAGAAC+AGG + chr6_3:24316365-24316384 None:intergenic 25.0%
!!! TTTGTTTTCTCATATTGCTT+GGG - chr6_3:24316903-24316922 Msa0945520:intron 25.0%
!!! ATTGTTTTGATGTTGTTTCA+AGG - chr6_3:24317083-24317102 Msa0945520:CDS 25.0%
! ATGTAATGAAAGAGTTGAAA+AGG + chr6_3:24317230-24317249 None:intergenic 25.0%
!!! GGTTTTTTTTTAAGAAGTGT+TGG - chr6_3:24317440-24317459 Msa0945520:intron 25.0%
!! TCTAAAGAGCAATTTTCAAA+GGG - chr6_3:24317593-24317612 Msa0945520:CDS 25.0%
! TCTCACAGTTATTAATGTAT+CGG - chr6_3:24317829-24317848 Msa0945520:intron 25.0%
! AAATATATGCAACAAACCAA+GGG + chr6_3:24318173-24318192 None:intergenic 25.0%
! AAAATATATGCAACAAACCA+AGG + chr6_3:24318174-24318193 None:intergenic 25.0%
!! TTTGTTGCATATATTTTGCT+TGG - chr6_3:24318177-24318196 Msa0945520:intron 25.0%
! GATTAACATTATCGTCAAAA+TGG - chr6_3:24318248-24318267 Msa0945520:intron 25.0%
!!! TGCATTTATAGTCTTGTAAT+TGG - chr6_3:24318302-24318321 Msa0945520:intron 25.0%
!! TCAGATAAATTGCTATTGAT+TGG + chr6_3:24318868-24318887 None:intergenic 25.0%
! ATTGCATATTCTATATGAAC+AGG - chr6_3:24318962-24318981 Msa0945520:intron 25.0%
! TCATGTAAATAGTGTAATGA+GGG + chr6_3:24319001-24319020 None:intergenic 25.0%
!! AAAGAGGTTTGTAGAAATTT+TGG - chr6_3:24319220-24319239 Msa0945520:CDS 25.0%
! TTGAATGAAAACTGAACAAT+TGG - chr6_3:24319252-24319271 Msa0945520:CDS 25.0%
!! TAGGTTCTAGTAAAACTATT+TGG - chr6_3:24319503-24319522 Msa0945520:intron 25.0%
!! AGGTTCTAGTAAAACTATTT+GGG - chr6_3:24319504-24319523 Msa0945520:intron 25.0%
!! GATTTATAGTTCTTCCATTT+TGG - chr6_3:24319622-24319641 Msa0945520:intron 25.0%
! TTCACTTATAGTAGAAGATA+TGG - chr6_3:24319733-24319752 Msa0945520:intron 25.0%
! TTGTAGTCAAGCTATAAATA+AGG - chr6_3:24319839-24319858 Msa0945520:intron 25.0%
! TGTAGTCAAGCTATAAATAA+GGG - chr6_3:24319840-24319859 Msa0945520:intron 25.0%
! TGTAAAAACAAATGGTATAC+AGG - chr6_3:24319920-24319939 Msa0945520:CDS 25.0%
!! AATTTCCCTTATGATCTTTT+TGG - chr6_3:24320008-24320027 Msa0945520:CDS 25.0%
!! TTAGATAAATTAGGGACTTT+TGG + chr6_3:24320081-24320100 None:intergenic 25.0%
! AAGGTCTGTTAGATAAATTA+GGG + chr6_3:24320089-24320108 None:intergenic 25.0%
! TAAGGTCTGTTAGATAAATT+AGG + chr6_3:24320090-24320109 None:intergenic 25.0%
!! CTTTTATTCTATTTTCCCAA+TGG - chr6_3:24320111-24320130 Msa0945520:intron 25.0%
! CATGCATATGTTTAAAAGTT+AGG + chr6_3:24320342-24320361 None:intergenic 25.0%
!! CTAACTTTTAAACATATGCA+TGG - chr6_3:24320340-24320359 Msa0945520:intron 25.0%
! ATGTAAGCTTTCACATTTAT+TGG - chr6_3:24320807-24320826 Msa0945520:intron 25.0%
!! AATACATTTTGCTTCTAACA+TGG + chr6_3:24321123-24321142 None:intergenic 25.0%
!! TCTACATTACTTGTTGATTA+AGG - chr6_3:24321442-24321461 Msa0945520:intron 25.0%
! CATGTTTCATTAGTTCATTA+TGG + chr6_3:24321528-24321547 None:intergenic 25.0%
! CATAATGAACTAATGAAACA+TGG - chr6_3:24321526-24321545 Msa0945520:intron 25.0%
! CTAACAATATTAGCATTGTT+AGG + chr6_3:24321710-24321729 None:intergenic 25.0%
!! TCTATACAATTGTGAGTTTT+CGG + chr6_3:24321759-24321778 None:intergenic 25.0%
! ATATAGCAACATTTGGATAA+AGG + chr6_3:24321939-24321958 None:intergenic 25.0%
! CTTATAGATATAGCAACATT+TGG + chr6_3:24321946-24321965 None:intergenic 25.0%
! TGATGTGTTCAAATTATTGT+TGG - chr6_3:24322143-24322162 Msa0945520:five_prime_UTR 25.0%
! GATGTGTTCAAATTATTGTT+GGG - chr6_3:24322144-24322163 Msa0945520:five_prime_UTR 25.0%
!! AACTCAAGTTTCTTGTTGTT+TGG + chr6_3:24315727-24315746 None:intergenic 30.0%
! TGATTTGAGATTGAAATGTC+AGG - chr6_3:24316079-24316098 Msa0945520:intron 30.0%
ATGCTATCAAAACGAATCAA+AGG + chr6_3:24316561-24316580 None:intergenic 30.0%
!! TATTTTTGTGTATGCACAGA+TGG - chr6_3:24316629-24316648 Msa0945520:CDS 30.0%
GAAAAATGGTATTCTGATCA+AGG + chr6_3:24316846-24316865 None:intergenic 30.0%
!! GAATACCATTTTTCTCTCTT+CGG - chr6_3:24316852-24316871 Msa0945520:intron 30.0%
!! GTTTGTTTTCTCATATTGCT+TGG - chr6_3:24316902-24316921 Msa0945520:intron 30.0%
! TTGTTTTCTCATATTGCTTG+GGG - chr6_3:24316904-24316923 Msa0945520:intron 30.0%
TGCATGTAAAGCAATAGAAA+AGG + chr6_3:24317327-24317346 None:intergenic 30.0%
TACATGCAATGTTTGTATCT+TGG - chr6_3:24317339-24317358 Msa0945520:CDS 30.0%
TTGTTGTGGTTTACAACAAA+TGG - chr6_3:24317371-24317390 Msa0945520:intron 30.0%
AGACTTCCAAAATTTCTCTA+GGG + chr6_3:24317576-24317595 None:intergenic 30.0%
TAGACTTCCAAAATTTCTCT+AGG + chr6_3:24317577-24317596 None:intergenic 30.0%
! GTCTAAAGAGCAATTTTCAA+AGG - chr6_3:24317592-24317611 Msa0945520:CDS 30.0%
TTAATGATGCATTCACATTC+TGG - chr6_3:24317804-24317823 Msa0945520:intron 30.0%
GATACATTAATAACTGTGAG+AGG + chr6_3:24317830-24317849 None:intergenic 30.0%
GCACAATATCAAACATTTCA+TGG - chr6_3:24317878-24317897 Msa0945520:intron 30.0%
CAGAACCATATATGTTACAT+GGG - chr6_3:24318062-24318081 Msa0945520:intron 30.0%
!! AATATTTTCAAGCTGCAGAT+GGG + chr6_3:24318101-24318120 None:intergenic 30.0%
!! TAATATTTTCAAGCTGCAGA+TGG + chr6_3:24318102-24318121 None:intergenic 30.0%
TATTAATGTCACTAGACACA+TGG - chr6_3:24318117-24318136 Msa0945520:intron 30.0%
AATATATGCAACAAACCAAG+GGG + chr6_3:24318172-24318191 None:intergenic 30.0%
! TGCATATATTTTGCTTGGAA+AGG - chr6_3:24318182-24318201 Msa0945520:intron 30.0%
AAAAGAAAGTAGCTTAACCT+TGG - chr6_3:24318686-24318705 Msa0945520:intron 30.0%
TGGAAACATTGAAAAGACAA+AGG + chr6_3:24318848-24318867 None:intergenic 30.0%
!! GCAATTTATCTGATTTTTGG+TGG - chr6_3:24318875-24318894 Msa0945520:intron 30.0%
TAAATAGTGTAATGAGGGAA+GGG + chr6_3:24318996-24319015 None:intergenic 30.0%
CTCATGTAAATAGTGTAATG+AGG + chr6_3:24319002-24319021 None:intergenic 30.0%
CTCATTACACTATTTACATG+AGG - chr6_3:24319000-24319019 Msa0945520:intron 30.0%
AACTGAACAATTGGCAAAAA+TGG - chr6_3:24319261-24319280 Msa0945520:CDS 30.0%
TTGGCAAAAATGGTTGAAAA+AGG - chr6_3:24319271-24319290 Msa0945520:CDS 30.0%
!!! TTTTAACTTCACATGGACTT+AGG + chr6_3:24319328-24319347 None:intergenic 30.0%
! GCTAAAAGGTACATATTTCA+AGG + chr6_3:24319571-24319590 None:intergenic 30.0%
AAGCATCAATGATAGCTAAA+AGG + chr6_3:24319585-24319604 None:intergenic 30.0%
CTAAATGCTATCTAAGAATG+AGG + chr6_3:24319772-24319791 None:intergenic 30.0%
CTCATTCTTAGATAGCATTT+AGG - chr6_3:24319770-24319789 Msa0945520:intron 30.0%
GTAGTCAAGCTATAAATAAG+GGG - chr6_3:24319841-24319860 Msa0945520:intron 30.0%
AAAGAGAGGATACCAAATAA+AGG + chr6_3:24319956-24319975 None:intergenic 30.0%
! TATTTTCCTTTCCTCATTGT+AGG - chr6_3:24319975-24319994 Msa0945520:CDS 30.0%
GAAAGCCAAAAAGATCATAA+GGG + chr6_3:24320016-24320035 None:intergenic 30.0%
TGAAAGCCAAAAAGATCATA+AGG + chr6_3:24320017-24320036 None:intergenic 30.0%
TATAGGACAGAAATAACTAC+TGG + chr6_3:24320041-24320060 None:intergenic 30.0%
TCCTATATTTGACATTGCAT+AGG - chr6_3:24320054-24320073 Msa0945520:intron 30.0%
TCCTATGCAATGTCAAATAT+AGG + chr6_3:24320058-24320077 None:intergenic 30.0%
AAACAAAGAGATTTAGCATC+GGG + chr6_3:24320220-24320239 None:intergenic 30.0%
GAAACAAAGAGATTTAGCAT+CGG + chr6_3:24320221-24320240 None:intergenic 30.0%
TCTCTATTAACACCAATGAT+TGG - chr6_3:24320313-24320332 Msa0945520:intron 30.0%
AAAGTTAGGAAACCAATCAT+TGG + chr6_3:24320328-24320347 None:intergenic 30.0%
AATGTGGAACTGATAGTAAT+GGG - chr6_3:24320486-24320505 Msa0945520:intron 30.0%
!!! TTATTTTTAATCTGCAGGCT+AGG - chr6_3:24320647-24320666 Msa0945520:intron 30.0%
! TTATTGGCTATGCGTATAAA+TGG - chr6_3:24320823-24320842 Msa0945520:intron 30.0%
! AATGGTTTGGAACTAATGTA+CGG - chr6_3:24320841-24320860 Msa0945520:intron 30.0%
! AATGTACGGAGTTAATTTTC+AGG - chr6_3:24320855-24320874 Msa0945520:intron 30.0%
GTCTAAACAAAAAAGAGACT+TGG + chr6_3:24321083-24321102 None:intergenic 30.0%
GAGAGATACTAAAATTATCC+AGG + chr6_3:24321403-24321422 None:intergenic 30.0%
!! GGATAATTTTAGTATCTCTC+AGG - chr6_3:24321403-24321422 Msa0945520:intron 30.0%
AATCAACAAGTAATGTAGAG+AGG + chr6_3:24321441-24321460 None:intergenic 30.0%
! CTATACAATTGTGAGTTTTC+GGG + chr6_3:24321758-24321777 None:intergenic 30.0%
! GCATTGAATTTGAGACAAAT+TGG - chr6_3:24321808-24321827 Msa0945520:CDS 30.0%
CAAATTGGAAAATGTCCTTA+CGG - chr6_3:24321823-24321842 Msa0945520:CDS 30.0%
TTATACTTCCAACGTGTTTA+AGG - chr6_3:24321848-24321867 Msa0945520:CDS 30.0%
! ATATATTGTTGTTCTTGCTC+AGG + chr6_3:24322006-24322025 None:intergenic 30.0%
TAATTTGAACACATCACCTA+TGG + chr6_3:24322139-24322158 None:intergenic 30.0%
!! ATTGTTGGGTTAGTTTAGTT+TGG - chr6_3:24322158-24322177 Msa0945520:five_prime_UTR 30.0%
! GTTTAATGGTCACTTTCTTT+AGG - chr6_3:24322220-24322239 Msa0945520:five_prime_UTR 30.0%
!! CACTTTCTTTAGGATGAAAT+TGG - chr6_3:24322230-24322249 Msa0945520:five_prime_UTR 30.0%
!! TTCTTTAGGATGAAATTGGA+AGG - chr6_3:24322234-24322253 Msa0945520:five_prime_UTR 30.0%
CAACAAGAAACTTGAGTTAG+AGG - chr6_3:24315729-24315748 Msa0945520:three_prime_UTR 35.0%
!! AAAAAGCGCTTAACCGTATA+TGG + chr6_3:24315776-24315795 None:intergenic 35.0%
AGTGAATGAAAATGAGACGT+AGG + chr6_3:24315865-24315884 None:intergenic 35.0%
TGCTACTAGCTAGTAATCAA+AGG - chr6_3:24316032-24316051 Msa0945520:intron 35.0%
AACAAGTGAGGAATGGAAAA+AGG + chr6_3:24316169-24316188 None:intergenic 35.0%
! TGAGTATGGATTATTCAGCA+TGG - chr6_3:24316381-24316400 Msa0945520:intron 35.0%
TGGATTATTCAGCATGGTAT+TGG - chr6_3:24316387-24316406 Msa0945520:intron 35.0%
TTACCAATGTCTCGAATTGA+AGG - chr6_3:24316661-24316680 Msa0945520:intron 35.0%
AAACAACTTGAAATCCAGTC+GGG + chr6_3:24316690-24316709 None:intergenic 35.0%
CAAACAACTTGAAATCCAGT+CGG + chr6_3:24316691-24316710 None:intergenic 35.0%
! TGTTTTCTCATATTGCTTGG+GGG - chr6_3:24316905-24316924 Msa0945520:intron 35.0%
GTGTAATGAAAGAGCTGAAA+AGG - chr6_3:24317105-24317124 Msa0945520:CDS 35.0%
! GAAAAGGAAGTTGTTTCAAG+AGG - chr6_3:24317121-24317140 Msa0945520:CDS 35.0%
! CTTGGTCATTTCATTTGTTG+TGG - chr6_3:24317357-24317376 Msa0945520:intron 35.0%
TGTGGTTTACAACAAATGGA+TGG - chr6_3:24317375-24317394 Msa0945520:intron 35.0%
TGAGTTGTCGTTCTGATATA+AGG - chr6_3:24317467-24317486 Msa0945520:intron 35.0%
! AACTGTTGTTGGGAGTATAA+AGG - chr6_3:24317537-24317556 Msa0945520:CDS 35.0%
GACTTCCAAAATTTCTCTAG+GGG + chr6_3:24317575-24317594 None:intergenic 35.0%
GCAGAACCATATATGTTACA+TGG - chr6_3:24318061-24318080 Msa0945520:intron 35.0%
ATATATGCAACAAACCAAGG+GGG + chr6_3:24318171-24318190 None:intergenic 35.0%
!!! AATGGTGTGTTATTTTCTCC+AGG - chr6_3:24318266-24318285 Msa0945520:intron 35.0%
TTGAAAAGACAAAGGAGAGA+GGG + chr6_3:24318840-24318859 None:intergenic 35.0%
ATTGAAAAGACAAAGGAGAG+AGG + chr6_3:24318841-24318860 None:intergenic 35.0%
GTAAATAGTGTAATGAGGGA+AGG + chr6_3:24318997-24319016 None:intergenic 35.0%
TAACATACATTGCATGTGCA+TGG + chr6_3:24319055-24319074 None:intergenic 35.0%
!! ATGCTTTCAGGAAGTATCTT+TGG - chr6_3:24319126-24319145 Msa0945520:intron 35.0%
TTCAGTGCTTGAATAATGTC+CGG + chr6_3:24319202-24319221 None:intergenic 35.0%
!! CATTATTCAAGCACTGAAAG+AGG - chr6_3:24319204-24319223 Msa0945520:CDS 35.0%
ATCAATCAATGGAGTGATCA+AGG + chr6_3:24319820-24319839 None:intergenic 35.0%
GCTTGACTACAATCAATCAA+TGG + chr6_3:24319831-24319850 None:intergenic 35.0%
GAGGATACCAAATAAAGGAT+GGG + chr6_3:24319951-24319970 None:intergenic 35.0%
AGAGGATACCAAATAAAGGA+TGG + chr6_3:24319952-24319971 None:intergenic 35.0%
GAGGAAAGGAAAATAAAGAG+AGG + chr6_3:24319970-24319989 None:intergenic 35.0%
! GGTGTTAATAGAGATTAGCT+TGG + chr6_3:24320307-24320326 None:intergenic 35.0%
CTAACATGCTTAATTTCAGC+CGG - chr6_3:24320385-24320404 Msa0945520:intron 35.0%
AAGTCCTTCATCAGTAAAAG+TGG + chr6_3:24320423-24320442 None:intergenic 35.0%
AGAAACATACTTTAGCAGCA+TGG - chr6_3:24320444-24320463 Msa0945520:intron 35.0%
GAGAGAAAATTACAGCAATG+TGG - chr6_3:24320470-24320489 Msa0945520:intron 35.0%
CAATGTGGAACTGATAGTAA+TGG - chr6_3:24320485-24320504 Msa0945520:intron 35.0%
CTTACATCAACAAAACTCCA+AGG + chr6_3:24320521-24320540 None:intergenic 35.0%
ATGTCTTCTAGTCTCTCAAA+AGG + chr6_3:24320673-24320692 None:intergenic 35.0%
GAATGCATAATAGCAACTAC+TGG + chr6_3:24320724-24320743 None:intergenic 35.0%
TATTATGCATTCTTCTTCCG+AGG - chr6_3:24320732-24320751 Msa0945520:intron 35.0%
AAGCGTTTCAAGAACGATTA+TGG - chr6_3:24320885-24320904 Msa0945520:intron 35.0%
TTCAATACCTTTGGGTAGAT+GGG - chr6_3:24320938-24320957 Msa0945520:intron 35.0%
AGTTAGCTCAATACCAATTG+TGG - chr6_3:24321212-24321231 Msa0945520:intron 35.0%
ATACCAATTGTGGATGATTC+TGG - chr6_3:24321222-24321241 Msa0945520:intron 35.0%
CTAGATGTGAAATGTATGCT+AGG - chr6_3:24321372-24321391 Msa0945520:intron 35.0%
ATTAGCATTGTTAGGCCTTA+CGG + chr6_3:24321702-24321721 None:intergenic 35.0%
!! TGGGTTAGTTTAGTTTGGAA+TGG - chr6_3:24322163-24322182 Msa0945520:five_prime_UTR 35.0%
!! GGGTTAGTTTAGTTTGGAAT+GGG - chr6_3:24322164-24322183 Msa0945520:five_prime_UTR 35.0%
!! TTAGTTTAGTTTGGAATGGG+AGG - chr6_3:24322167-24322186 Msa0945520:five_prime_UTR 35.0%
! TTTAGGATGAAATTGGAAGG+AGG - chr6_3:24322237-24322256 Msa0945520:five_prime_UTR 35.0%
TTAGGATGAAATTGGAAGGA+GGG - chr6_3:24322238-24322257 Msa0945520:five_prime_UTR 35.0%
CAGTAGCATGCATCCATATA+CGG - chr6_3:24315760-24315779 Msa0945520:three_prime_UTR 40.0%
TTGCATTGTGAACTGTGCTA+TGG + chr6_3:24315912-24315931 None:intergenic 40.0%
ATGGAAAAAGGTTGAGGATC+AGG + chr6_3:24316157-24316176 None:intergenic 40.0%
TGAGGAATGGAAAAAGGTTG+AGG + chr6_3:24316163-24316182 None:intergenic 40.0%
CCAAACAAACAAGTGAGGAA+TGG + chr6_3:24316176-24316195 None:intergenic 40.0%
CCATTCCTCACTTGTTTGTT+TGG - chr6_3:24316173-24316192 Msa0945520:CDS 40.0%
TTTCTATGCGGTTCTTTCAC+TGG - chr6_3:24316217-24316236 Msa0945520:intron 40.0%
TTCTATGCGGTTCTTTCACT+GGG - chr6_3:24316218-24316237 Msa0945520:intron 40.0%
!!! GCTGTCACTTTGTTTCCTTT+TGG - chr6_3:24316424-24316443 Msa0945520:intron 40.0%
CTTGACTCCAGGATTTCATA+CGG - chr6_3:24316714-24316733 Msa0945520:intron 40.0%
CCAAATACCGTATGAAATCC+TGG + chr6_3:24316724-24316743 None:intergenic 40.0%
CCAGGATTTCATACGGTATT+TGG - chr6_3:24316721-24316740 Msa0945520:intron 40.0%
GATCTCCGAAGAGAGAAAAA+TGG + chr6_3:24316860-24316879 None:intergenic 40.0%
GAAGAGGAAAGAAAGGGTAA+AGG - chr6_3:24316927-24316946 Msa0945520:intron 40.0%
! CTTGCTGTCCTGCTTTATAT+TGG - chr6_3:24317160-24317179 Msa0945520:intron 40.0%
TGTCCTGCTTTATATTGGCA+GGG - chr6_3:24317165-24317184 Msa0945520:intron 40.0%
GGTTTACAACAAATGGATGG+AGG - chr6_3:24317378-24317397 Msa0945520:intron 40.0%
TACAACAAATGGATGGAGGT+TGG - chr6_3:24317382-24317401 Msa0945520:intron 40.0%
!! TTGGACGGAGATTGGTTTAT+AGG - chr6_3:24317406-24317425 Msa0945520:intron 40.0%
!! TGGACGGAGATTGGTTTATA+GGG - chr6_3:24317407-24317426 Msa0945520:intron 40.0%
GGTTTATAGGGAGGAAAGTT+TGG - chr6_3:24317419-24317438 Msa0945520:intron 40.0%
GCAGACAGTTAACTGTTGTT+GGG - chr6_3:24317527-24317546 Msa0945520:CDS 40.0%
! GGGAGTATAAAGGTCATTTC+AGG - chr6_3:24317547-24317566 Msa0945520:CDS 40.0%
! AGGATCCCCTAGAGAAATTT+TGG - chr6_3:24317567-24317586 Msa0945520:CDS 40.0%
!! TGTGCAGTATCAGTTTTGTG+TGG - chr6_3:24317964-24317983 Msa0945520:intron 40.0%
!! CAGTATCAGTTTTGTGTGGA+TGG - chr6_3:24317968-24317987 Msa0945520:intron 40.0%
GAGCAGCAGCCATTTATAAA+CGG - chr6_3:24318007-24318026 Msa0945520:intron 40.0%
AGCAGCAGCCATTTATAAAC+GGG - chr6_3:24318008-24318027 Msa0945520:intron 40.0%
GGCATCCCATGTAACATATA+TGG + chr6_3:24318070-24318089 None:intergenic 40.0%
! TTAACCTTGGAGCTTTTCCA+GGG - chr6_3:24318699-24318718 Msa0945520:intron 40.0%
! TTTTCCAGGGAGTTTTTCCT+AGG - chr6_3:24318712-24318731 Msa0945520:intron 40.0%
TACTGCTTCTCATTTGCTTC+CGG - chr6_3:24318794-24318813 Msa0945520:intron 40.0%
TGAAAAGACAAAGGAGAGAG+GGG + chr6_3:24318839-24318858 None:intergenic 40.0%
! TCTAGGAAGTGCAAGTTTGT+TGG - chr6_3:24319163-24319182 Msa0945520:intron 40.0%
GGTTGTACCCATCCTTTATT+TGG - chr6_3:24319941-24319960 Msa0945520:CDS 40.0%
CAAGAACCTACAATGAGGAA+AGG + chr6_3:24319984-24320003 None:intergenic 40.0%
TGATGCAAGAACCTACAATG+AGG + chr6_3:24319989-24320008 None:intergenic 40.0%
ACAAACCATGGCATTTGTGA+AGG + chr6_3:24320162-24320181 None:intergenic 40.0%
TCCAGTGACAAAACAAACCA+TGG + chr6_3:24320174-24320193 None:intergenic 40.0%
!! CGATCCACTTTTACTGATGA+AGG - chr6_3:24320416-24320435 Msa0945520:intron 40.0%
! GTAATGGGAAAGCATATCCT+TGG - chr6_3:24320501-24320520 Msa0945520:intron 40.0%
GGCTATGCGTATAAATGGTT+TGG - chr6_3:24320828-24320847 Msa0945520:intron 40.0%
GAACGATTATGGTTCTTTGC+CGG - chr6_3:24320896-24320915 Msa0945520:intron 40.0%
CCAATCGGTATTTGAAGAAC+CGG + chr6_3:24320918-24320937 None:intergenic 40.0%
! ACCGATTGGTTCAATACCTT+TGG - chr6_3:24320929-24320948 Msa0945520:intron 40.0%
!! CCCAAAGGTATTGAACCAAT+CGG + chr6_3:24320933-24320952 None:intergenic 40.0%
! CCGATTGGTTCAATACCTTT+GGG - chr6_3:24320930-24320949 Msa0945520:intron 40.0%
GTTCAATACCTTTGGGTAGA+TGG - chr6_3:24320937-24320956 Msa0945520:intron 40.0%
! TTATTGGATTCCCCCACTTT+TGG + chr6_3:24320966-24320985 None:intergenic 40.0%
CGTTGCAATTGGCTGTTTAT+TGG + chr6_3:24320982-24321001 None:intergenic 40.0%
GCTATCGCTCTAATGAATCA+AGG - chr6_3:24321029-24321048 Msa0945520:intron 40.0%
GAACCAGAATCATCCACAAT+TGG + chr6_3:24321228-24321247 None:intergenic 40.0%
TCACAGTGATCTTACTGCAT+TGG - chr6_3:24321349-24321368 Msa0945520:CDS 40.0%
AATGTATGCTAGGATAAGCC+TGG - chr6_3:24321382-24321401 Msa0945520:intron 40.0%
!!! ATGAAGTTTTTTTGTGCCGC+AGG - chr6_3:24321786-24321805 Msa0945520:intron 40.0%
TGTCTCAAATTCAATGCCTG+CGG + chr6_3:24321805-24321824 None:intergenic 40.0%
! GTTGGAAGTATAAGTCCGTA+AGG + chr6_3:24321841-24321860 None:intergenic 40.0%
ATGGAACGCTTTGCTAATTC+TGG - chr6_3:24321892-24321911 Msa0945520:CDS 40.0%
TGTTGTTCTTGCTCAGGTAA+AGG + chr6_3:24322000-24322019 None:intergenic 40.0%
! GAATGGGAGGAAAACTGTTT+TGG - chr6_3:24322180-24322199 Msa0945520:five_prime_UTR 40.0%
AAAGGTTGAGGATCAGGTAC+TGG + chr6_3:24316151-24316170 None:intergenic 45.0%
TGAGGCCAAACAAACAAGTG+AGG + chr6_3:24316181-24316200 None:intergenic 45.0%
CACTTGTTTGTTTGGCCTCA+TGG - chr6_3:24316181-24316200 Msa0945520:CDS 45.0%
TTGTTTGTTTGGCCTCATGG+AGG - chr6_3:24316184-24316203 Msa0945520:CDS 45.0%
GAAAGAACCGCATAGAAACG+CGG + chr6_3:24316215-24316234 None:intergenic 45.0%
! GTTGTTTGCTACTTGACTCC+AGG - chr6_3:24316703-24316722 Msa0945520:intron 45.0%
TCTCTCTTCGGAGATCATAG+AGG - chr6_3:24316864-24316883 Msa0945520:intron 45.0%
CTCTCTTCGGAGATCATAGA+GGG - chr6_3:24316865-24316884 Msa0945520:intron 45.0%
TCTCTTCGGAGATCATAGAG+GGG - chr6_3:24316866-24316885 Msa0945520:intron 45.0%
TTGGGGGAAGAGGAAAGAAA+GGG - chr6_3:24316921-24316940 Msa0945520:intron 45.0%
CTGTCCTGCTTTATATTGGC+AGG - chr6_3:24317164-24317183 Msa0945520:intron 45.0%
CTTTATATTGGCAGGGCAGT+AGG - chr6_3:24317172-24317191 Msa0945520:intron 45.0%
! CAAATGGATGGAGGTTGGTT+TGG - chr6_3:24317387-24317406 Msa0945520:intron 45.0%
!! ACGGAGATTGGTTTATAGGG+AGG - chr6_3:24317410-24317429 Msa0945520:intron 45.0%
! CTTAAGTGCCACTAGTGTGA+CGG - chr6_3:24317505-24317524 Msa0945520:CDS 45.0%
GGCAGACAGTTAACTGTTGT+TGG - chr6_3:24317526-24317545 Msa0945520:CDS 45.0%
!! AGTTTTGTGTGGATGGTGTG+TGG - chr6_3:24317975-24317994 Msa0945520:intron 45.0%
GCGGTGAACCCGTTTATAAA+TGG + chr6_3:24318019-24318038 None:intergenic 45.0%
CGAAATAGTGTTCACTGTGG+CGG + chr6_3:24318038-24318057 None:intergenic 45.0%
CGCCACAGTGAACACTATTT+CGG - chr6_3:24318036-24318055 Msa0945520:intron 45.0%
CACCGAAATAGTGTTCACTG+TGG + chr6_3:24318041-24318060 None:intergenic 45.0%
CACAGTGAACACTATTTCGG+TGG - chr6_3:24318039-24318058 Msa0945520:intron 45.0%
ATGCATGCACATATGCTACC+TGG + chr6_3:24318287-24318306 None:intergenic 45.0%
! CTTAACCTTGGAGCTTTTCC+AGG - chr6_3:24318698-24318717 Msa0945520:intron 45.0%
TATCAAACCTTGCCAGACTC+CGG + chr6_3:24318816-24318835 None:intergenic 45.0%
! AAGTATCTTTGGCTCCTGTG+TGG - chr6_3:24319137-24319156 Msa0945520:intron 45.0%
! AGTATCTTTGGCTCCTGTGT+GGG - chr6_3:24319138-24319157 Msa0945520:intron 45.0%
GAGTGATCAAGGATCTACTC+AGG + chr6_3:24319809-24319828 None:intergenic 45.0%
!!! GCCATGGTTTGTTTTGTCAC+TGG - chr6_3:24320170-24320189 Msa0945520:intron 45.0%
AAAGTGGATCGATGACTCTC+CGG + chr6_3:24320407-24320426 None:intergenic 45.0%
ATGCATTCTTCTTCCGAGGA+CGG - chr6_3:24320736-24320755 Msa0945520:intron 45.0%
GAAGTCATATGTAGCAGCTG+AGG + chr6_3:24320769-24320788 None:intergenic 45.0%
CCGGTTCTTCAAATACCGAT+TGG - chr6_3:24320915-24320934 Msa0945520:intron 45.0%
AACAGCCAATTGCAACGCTA+AGG - chr6_3:24320985-24321004 Msa0945520:intron 45.0%
!! TTTGGCCTTAGCGTTGCAAT+TGG + chr6_3:24320993-24321012 None:intergenic 45.0%
!! GCAGCACTAAGAGAAGCATT+TGG + chr6_3:24321011-24321030 None:intergenic 45.0%
TAGCTGTTCTTAGCACAAGG+AGG + chr6_3:24321292-24321311 None:intergenic 45.0%
GTCTAGCTGTTCTTAGCACA+AGG + chr6_3:24321295-24321314 None:intergenic 45.0%
CATCACCACATGCAATGGAT+CGG + chr6_3:24321875-24321894 None:intergenic 45.0%
!! TACAGGTGTTGGAGAAGTTG+TGG - chr6_3:24322074-24322093 Msa0945520:five_prime_UTR 45.0%
GTGCAAGGGATCATTTCCAT+AGG - chr6_3:24322120-24322139 Msa0945520:five_prime_UTR 45.0%
!!! AACATTTTAAAAAAATTAAT+CGG - chr6_3:24318426-24318445 Msa0945520:intron 5.0%
ATGTCAGGTTCATCAGCTGC+AGG - chr6_3:24316094-24316113 Msa0945520:intron 50.0%
GGTGAAACCGCGTTTCTATG+CGG - chr6_3:24316205-24316224 Msa0945520:intron 50.0%
CGGCCTTCAATTCGAGACAT+TGG + chr6_3:24316667-24316686 None:intergenic 50.0%
CAACTTGAAATCCAGTCGGG+CGG + chr6_3:24316687-24316706 None:intergenic 50.0%
TTCGGAGATCATAGAGGGGA+TGG - chr6_3:24316870-24316889 Msa0945520:intron 50.0%
TCGGAGATCATAGAGGGGAT+GGG - chr6_3:24316871-24316890 Msa0945520:intron 50.0%
CTCATATTGCTTGGGGGAAG+AGG - chr6_3:24316911-24316930 Msa0945520:intron 50.0%
CTTGGGGGAAGAGGAAAGAA+AGG - chr6_3:24316920-24316939 Msa0945520:intron 50.0%
CTGCCCTGCCAATATAAAGC+AGG + chr6_3:24317171-24317190 None:intergenic 50.0%
!! TGGATGGAGGTTGGTTTGGA+CGG - chr6_3:24317391-24317410 Msa0945520:intron 50.0%
!! AGGTTGGTTTGGACGGAGAT+TGG - chr6_3:24317398-24317417 Msa0945520:intron 50.0%
TTTGTGTGGATGGTGTGTGG+CGG - chr6_3:24317978-24317997 Msa0945520:intron 50.0%
AGCTGCAGATGGGATCTACT+AGG + chr6_3:24318091-24318110 None:intergenic 50.0%
! CAAACCAAGGGGGCATAGAT+GGG + chr6_3:24318161-24318180 None:intergenic 50.0%
! ACAAACCAAGGGGGCATAGA+TGG + chr6_3:24318162-24318181 None:intergenic 50.0%
AACTCCCTGGAAAAGCTCCA+AGG + chr6_3:24318706-24318725 None:intergenic 50.0%
GTGTCCTAGGAAAAACTCCC+TGG + chr6_3:24318719-24318738 None:intergenic 50.0%
AGAGCAAACTCTGGTGTCCT+AGG + chr6_3:24318732-24318751 None:intergenic 50.0%
GAGACATGCAGAGCAAACTC+TGG + chr6_3:24318741-24318760 None:intergenic 50.0%
TCTCATTTGCTTCCGGAGTC+TGG - chr6_3:24318801-24318820 Msa0945520:CDS 50.0%
CACTTCCTAGAATCCCACAC+AGG + chr6_3:24319154-24319173 None:intergenic 50.0%
! TGTTGGAGTGCTTAGTGCAC+CGG - chr6_3:24319180-24319199 Msa0945520:intron 50.0%
ACCAGAAACACCATCAGCAG+AGG + chr6_3:24320139-24320158 None:intergenic 50.0%
CTGGTCCTTCACAAATGCCA+TGG - chr6_3:24320154-24320173 Msa0945520:intron 50.0%
!! AGCATCGGGTGCAGGTTTTA+TGG + chr6_3:24320206-24320225 None:intergenic 50.0%
! AGAGATTTAGCATCGGGTGC+AGG + chr6_3:24320214-24320233 None:intergenic 50.0%
GGATCGGACCTTAAACACGT+TGG + chr6_3:24321859-24321878 None:intergenic 50.0%
AAGGTCCGATCCATTGCATG+TGG - chr6_3:24321867-24321886 Msa0945520:CDS 50.0%
CGATCCATTGCATGTGGTGA+TGG - chr6_3:24321873-24321892 Msa0945520:CDS 50.0%
CGTTCCATCACCACATGCAA+TGG + chr6_3:24321880-24321899 None:intergenic 50.0%
!! AGGTGTTGGAGAAGTTGTGG+TGG - chr6_3:24322077-24322096 Msa0945520:five_prime_UTR 50.0%
GGTTCATCAGCTGCAGGTAG+AGG - chr6_3:24316100-24316119 Msa0945520:intron 55.0%
TCATCAGCTGCAGGTAGAGG+AGG - chr6_3:24316103-24316122 Msa0945520:intron 55.0%
GCTGCAGGTAGAGGAGGAAA+TGG - chr6_3:24316109-24316128 Msa0945520:intron 55.0%
AACGCGGTTTCACCTCCATG+AGG + chr6_3:24316199-24316218 None:intergenic 55.0%
ACTGTCTGCCGTCACACTAG+TGG + chr6_3:24317516-24317535 None:intergenic 55.0%
ACTTCCCATCTATGCCCCCT+TGG - chr6_3:24318154-24318173 Msa0945520:intron 55.0%
TTTGCTTCCGGAGTCTGGCA+AGG - chr6_3:24318806-24318825 Msa0945520:CDS 55.0%
TGGCTCCTGTGTGGGATTCT+AGG - chr6_3:24319146-24319165 Msa0945520:intron 55.0%
!! CCATCAGCAGAGGCACCATT+GGG + chr6_3:24320129-24320148 None:intergenic 55.0%
!! ACCATCAGCAGAGGCACCAT+TGG + chr6_3:24320130-24320149 None:intergenic 55.0%
! GCCTCTGCTGATGGTGTTTC+TGG - chr6_3:24320135-24320154 Msa0945520:intron 55.0%
TTTGGCGCCCATCTACCCAA+AGG + chr6_3:24320948-24320967 None:intergenic 55.0%
GGTAGATGGGCGCCAAAAGT+GGG - chr6_3:24320951-24320970 Msa0945520:intron 55.0%
GTAGATGGGCGCCAAAAGTG+GGG - chr6_3:24320952-24320971 Msa0945520:intron 55.0%
TAGATGGGCGCCAAAAGTGG+GGG - chr6_3:24320953-24320972 Msa0945520:intron 55.0%
CCCAATGGTGCCTCTGCTGA+TGG - chr6_3:24320126-24320145 Msa0945520:intron 60.0%
CTGAGGAGTTGAGCCGTCCT+CGG + chr6_3:24320752-24320771 None:intergenic 60.0%
GGGTAGATGGGCGCCAAAAG+TGG - chr6_3:24320950-24320969 Msa0945520:intron 60.0%
! TGGTGGTGAAGTCTGCCTGC+AGG - chr6_3:24322094-24322113 Msa0945520:five_prime_UTR 60.0%
! TCTGCCTGCAGGAGTGTGCA+AGG - chr6_3:24322105-24322124 Msa0945520:five_prime_UTR 60.0%
! CTGCCTGCAGGAGTGTGCAA+GGG - chr6_3:24322106-24322125 Msa0945520:five_prime_UTR 60.0%
GATCCCTTGCACACTCCTGC+AGG + chr6_3:24322112-24322131 None:intergenic 60.0%
CGAATTGAAGGCCGCCCGAC+TGG - chr6_3:24316673-24316692 Msa0945520:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 24315682 24322344 24315682 ID=Msa0945520;Name=Msa0945520
chr6_3 mRNA 24315682 24322344 24315682 ID=Msa0945520-mRNA-1;Parent=Msa0945520;Name=Msa0945520-mRNA-1;_AED=0.12;_eAED=0.12;_QI=412|1|1|1|1|1|13|174|480
chr6_3 exon 24315682 24315947 24315682 ID=Msa0945520-mRNA-1:exon:6989;Parent=Msa0945520-mRNA-1
chr6_3 exon 24316113 24316218 24316113 ID=Msa0945520-mRNA-1:exon:6988;Parent=Msa0945520-mRNA-1
chr6_3 exon 24316602 24316671 24316602 ID=Msa0945520-mRNA-1:exon:6987;Parent=Msa0945520-mRNA-1
chr6_3 exon 24316755 24316818 24316755 ID=Msa0945520-mRNA-1:exon:6986;Parent=Msa0945520-mRNA-1
chr6_3 exon 24316976 24317149 24316976 ID=Msa0945520-mRNA-1:exon:6985;Parent=Msa0945520-mRNA-1
chr6_3 exon 24317218 24317362 24317218 ID=Msa0945520-mRNA-1:exon:6984;Parent=Msa0945520-mRNA-1
chr6_3 exon 24317491 24317622 24317491 ID=Msa0945520-mRNA-1:exon:6983;Parent=Msa0945520-mRNA-1
chr6_3 exon 24318801 24318890 24318801 ID=Msa0945520-mRNA-1:exon:6982;Parent=Msa0945520-mRNA-1
chr6_3 exon 24319043 24319102 24319043 ID=Msa0945520-mRNA-1:exon:6981;Parent=Msa0945520-mRNA-1
chr6_3 exon 24319199 24319306 24319199 ID=Msa0945520-mRNA-1:exon:6980;Parent=Msa0945520-mRNA-1
chr6_3 exon 24319888 24320055 24319888 ID=Msa0945520-mRNA-1:exon:6979;Parent=Msa0945520-mRNA-1
chr6_3 exon 24321291 24321378 24321291 ID=Msa0945520-mRNA-1:exon:6978;Parent=Msa0945520-mRNA-1
chr6_3 exon 24321787 24322344 24321787 ID=Msa0945520-mRNA-1:exon:6977;Parent=Msa0945520-mRNA-1
chr6_3 five_prime_UTR 24321933 24322344 24321933 ID=Msa0945520-mRNA-1:five_prime_utr;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24321787 24321932 24321787 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24321291 24321378 24321291 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24319888 24320055 24319888 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24319199 24319306 24319199 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24319043 24319102 24319043 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24318801 24318890 24318801 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24317491 24317622 24317491 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24317218 24317362 24317218 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24316976 24317149 24316976 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24316755 24316818 24316755 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24316602 24316671 24316602 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24316113 24316218 24316113 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 CDS 24315856 24315947 24315856 ID=Msa0945520-mRNA-1:cds;Parent=Msa0945520-mRNA-1
chr6_3 three_prime_UTR 24315682 24315855 24315682 ID=Msa0945520-mRNA-1:three_prime_utr;Parent=Msa0945520-mRNA-1
Gene Sequence

>Msa0945520

ATGTCAGGTTCATCAGCTGCAGGTAGAGGAGGAAATGGAAGTAGTAGTGATGTACCAGTACCTGATCCTCAACCTTTTTCCATTCCTCACTTGTTTGTTTGGCCTCATGGAGGTGAAACCGCGTTTCTATGCGGTTCTTTCACTGGATGGTCAACAAATTTACCAATGTCTCGAATTGAAGGCCGCCCGACTGGATTTCAAGTTGTTTGCTACTTGACTCCAGGATTTCATACGTATCAGTTTTGTGTGGATGGTGTGTGGCGGCATGATGAGCAGCAGCCATTTATAAACGGGTTCACCGCCACAGTGAACACTATTTCGGTGGCAGAACCATATATGTTACATGGGATGCCTAGTAGATCCCATCTGCAGCTTGAAAATATTAATGTCACTAGACACATGGGAGTTTTTCCTAGGACACCAGAGTTTGCTCTGCATGTCTCGCGCTATCACATATATAAATTTATGTCATCGAATACTGCTTCTCATTTGCTTCCGGAGTCTGGCAAGGTATTTGTCTTGAATATAGATTTATCACTTCAGCAAGCATTGCATATTCTATATGAACAGGAAGTATCTTTGGCTCCTGTGTGGGATTCTAGGAAGTGCAAGTTTGTTGGAGTGCTTAGTGCACCGGACATTATTCAAGCACTGAAAGAGCCGGAGAGTCATCGATCCACTTTTACTGATGAAGGACTTGAGAAACATACTTTAGCAGCATGGATAGAGAGAAAATTACAGCAATGTGGAACTGATAGTAATGGGAAAGCATATCCTTGGAGTTTTGTTGATGCTAGGCCTTTTGAGAGACTAGAAGACATCGCTTTAAAATTTTTGCAATGCAAGGTGCCAGTAGTTGCTATTATGCATTCTTCTTCCGAGGACGGCTCAACTCCTCAGCTGCTACATATGACTTCTCGCTCAGAAATACTAAAATGTATATGCAAGCGTTTCAAGAACGATTATGGTTCTTTGCCGGTTCTTCAAATACCGATTGGTTCAATACCTTTGGGTAGATGGGCGCCAAAAGTGGGGGAATCCAATAAACAGCCAATTGCAACGCTAAGGCCAAATGCTTCTCTTAGTGCTGCTATCGCTCTAATGAATCAAGCTGAAGTTAGCTCAATACCAATTGTGGATGATTCTGGTTCATTATATGATGTATATTCAAGAAGTGATCTTACTGCATTGGCTAGATGTGAAATGTATGCTAGGATAAGCCTGGATAATTTTAGTATCTCTCAGGCATTGAATTTGAGACAAATTGGAAAATGTCCTTACGGACTTATACTTCCAACGTGTTTAAGGTCCGATCCATTGCATGTGGTGATGGAACGCTTTGCTAATTCTGGTGTTGGAGAAGTTGTGGTGGTGAAGTCTGCCTGCAGGAGTGTGCAAGGGATCATTTCCATAGGTGATGTGTTCAAATTATTGTTGGGTTAG

Protein sequence

>Msa0945520

MSGSSAAGRGGNGSSSDVPVPDPQPFSIPHLFVWPHGGETAFLCGSFTGWSTNLPMSRIEGRPTGFQVVCYLTPGFHTYQFCVDGVWRHDEQQPFINGFTATVNTISVAEPYMLHGMPSRSHLQLENINVTRHMGVFPRTPEFALHVSRYHIYKFMSSNTASHLLPESGKVFVLNIDLSLQQALHILYEQEVSLAPVWDSRKCKFVGVLSAPDIIQALKEPESHRSTFTDEGLEKHTLAAWIERKLQQCGTDSNGKAYPWSFVDARPFERLEDIALKFLQCKVPVVAIMHSSSEDGSTPQLLHMTSRSEILKCICKRFKNDYGSLPVLQIPIGSIPLGRWAPKVGESNKQPIATLRPNASLSAAIALMNQAEVSSIPIVDDSGSLYDVYSRSDLTALARCEMYARISLDNFSISQALNLRQIGKCPYGLILPTCLRSDPLHVVMERFANSGVGEVVVVKSACRSVQGIISIGDVFKLLLG*