AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0360790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360790 MtrunA17_Chr3g0098711 96.091 307 12 0 92 398 5 311 0.0 619
Msa0360790 MtrunA17_Chr5g0443731 76.389 72 17 0 19 90 22 93 9.28e-30 120
Msa0360790 MtrunA17_Chr3g0107511 43.590 117 60 2 4 114 7 123 2.91e-20 92.4
Msa0360790 MtrunA17_Chr3g0107501 45.918 98 51 1 17 112 24 121 4.60e-20 92.0
Msa0360790 MtrunA17_Chr5g0443401 33.333 96 61 2 21 113 33 128 7.79e-12 66.6
Msa0360790 MtrunA17_Chr5g0436981 36.000 75 45 1 20 91 19 93 8.11e-12 63.9
Msa0360790 MtrunA17_Chr5g0403931 32.584 89 57 1 6 91 13 101 3.64e-11 64.7
Msa0360790 MtrunA17_Chr7g0226771 38.636 88 54 0 4 91 11 98 5.48e-11 63.9
Msa0360790 MtrunA17_Chr3g0113321 37.500 72 45 0 20 91 23 94 6.93e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360790 AT4G27030.1 60.526 304 89 2 113 395 27 320 1.07e-138 399
Msa0360790 AT1G62190.1 56.071 280 107 2 113 392 25 288 1.39e-119 349
Msa0360790 AT2G22890.1 60.547 256 90 2 132 386 34 279 1.16e-114 336
Msa0360790 AT5G36110.2 42.857 70 36 1 26 91 34 103 4.64e-11 64.3
Msa0360790 AT5G36110.1 41.892 74 39 1 22 91 30 103 6.37e-11 64.3
Msa0360790 AT5G05690.2 39.394 66 40 0 26 91 31 96 8.96e-11 63.5

Find 125 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCCATCGAACCTTTAA+TGG 0.128810 3_1:-50520115 None:intergenic
CATTGGGCCATTGATAATTA+TGG 0.152142 3_1:+50520210 Msa0360790:CDS
GTTTCAAAGCTAAGTCTATT+TGG 0.196257 3_1:+50518956 Msa0360790:CDS
GGCCTTGGAAAGCTTCAATT+TGG 0.208933 3_1:-50520260 None:intergenic
TAGCATTGGGCTTGGACTTC+AGG 0.233568 3_1:-50519933 None:intergenic
TCGTTGGGAGAGTCCATTAA+AGG 0.296680 3_1:+50520102 Msa0360790:CDS
GGTTACATCTTAGCTGATCT+TGG 0.300492 3_1:+50520174 Msa0360790:CDS
CCAACAAAACTTTGAACAAT+AGG 0.307472 3_1:-50520393 None:intergenic
ATGCAATAATTATTGTTATA+CGG 0.313977 3_1:-50520561 None:intergenic
CAAGAAAGAGTAAAGAAATA+TGG 0.322723 3_1:+50518929 Msa0360790:CDS
ATTGGCGGTCGTGCAAGTTT+CGG 0.325462 3_1:-50519973 None:intergenic
CTTCTAAGTAGAAGGAGAAT+TGG 0.340087 3_1:-50518800 None:intergenic
AGAACCTGGAGGGACCCTTT+TGG 0.357615 3_1:-50518831 None:intergenic
GCCTTGGAAAGCTTCAATTT+GGG 0.372297 3_1:-50520259 None:intergenic
AGGGTCCCTCCAGGTTCTCT+TGG 0.376640 3_1:+50518836 Msa0360790:CDS
AATGGACAATGACCCTAGTT+TGG 0.384966 3_1:+50520023 Msa0360790:CDS
AAAGAAGGGGTCATTAGGTT+TGG 0.391713 3_1:-50520734 None:intergenic
CTTGTGTCACGGTCGCAACA+TGG 0.395704 3_1:+50520522 Msa0360790:CDS
GTTACATCTTAGCTGATCTT+GGG 0.396076 3_1:+50520175 Msa0360790:CDS
CCAATCCAACCTGCCACAAT+AGG 0.396466 3_1:-50520153 None:intergenic
CACAACATTGCTCATTTCGT+TGG 0.401615 3_1:+50520086 Msa0360790:CDS
AATAGCAATGAAAAGGTTCA+TGG 0.402178 3_1:-50518762 None:intergenic
CAATTGATTAGCATTGGGCT+TGG 0.402702 3_1:-50519941 None:intergenic
CAATTTCATGCATGGGCTCA+TGG 0.404441 3_1:+50520447 Msa0360790:CDS
CGGAGCAATTGACGCGAATT+CGG 0.404513 3_1:-50519879 None:intergenic
CCTATTGTGGCAGGTTGGAT+TGG 0.412756 3_1:+50520153 Msa0360790:CDS
CAATTTGGGCACCAACCAAT+GGG 0.415017 3_1:-50520245 None:intergenic
TTCTGCTGTGTTGTTACGTA+AGG 0.416530 3_1:-50518897 None:intergenic
ATGATCAATTGATTAGCATT+GGG 0.426195 3_1:-50519946 None:intergenic
TCTCTTGGAATACCTATCAT+TGG 0.426323 3_1:+50518851 Msa0360790:CDS
TTAGAAGATCATCATCCAAA+AGG 0.430250 3_1:+50518816 Msa0360790:CDS
TTCTAAGTAGAAGGAGAATT+GGG 0.433754 3_1:-50518799 None:intergenic
TTGGGTCCGGAGTTTACCAT+TGG 0.438101 3_1:+50520193 Msa0360790:CDS
AATGATCAATTGATTAGCAT+TGG 0.438397 3_1:-50519947 None:intergenic
TTGTGTCACGGTCGCAACAT+GGG 0.442683 3_1:+50520523 Msa0360790:CDS
ATGATGATCTTCTAAGTAGA+AGG 0.443395 3_1:-50518808 None:intergenic
TTAAACTTGGGGTTAGGCCT+AGG 0.445101 3_1:+50520655 Msa0360790:CDS
TCATGGAAAAGAAGATTGAT+AGG 0.446735 3_1:-50520369 None:intergenic
AATAATTATTGCATAGTAAG+TGG 0.447132 3_1:+50520570 Msa0360790:CDS
CGCAACATGGGGCACACCAC+CGG 0.450199 3_1:+50520535 Msa0360790:CDS
ATCTTAGCTGATCTTGGGTC+CGG 0.450717 3_1:+50520180 Msa0360790:CDS
TGGAGTGTGGAATGAGTTGT+TGG 0.450873 3_1:+50520590 Msa0360790:CDS
CAACAAAACTTTGAACAATA+GGG 0.456010 3_1:-50520392 None:intergenic
CCAAGGCTTTGACCAATGAT+AGG 0.457549 3_1:-50518863 None:intergenic
GAACAATTTGGTACCATCAT+TGG 0.457876 3_1:-50519029 None:intergenic
AAGTTTATATTCACCAATGA+TGG 0.458864 3_1:+50519016 Msa0360790:CDS
ACGGCCACTTATGATGGCCT+TGG 0.469320 3_1:-50520275 None:intergenic
GGGCTTGGACTTCAGGGCAG+TGG 0.471613 3_1:-50519926 None:intergenic
AGCATTGGGCTTGGACTTCA+GGG 0.478698 3_1:-50519932 None:intergenic
GAAAACTTGGTGGTGAAAGC+TGG 0.480653 3_1:-50519836 None:intergenic
TTGGCTAAACATAATACAAC+CGG 0.486952 3_1:-50520424 None:intergenic
ACAACATTGCTCATTTCGTT+GGG 0.487853 3_1:+50520087 Msa0360790:CDS
CCTATCATTGGTCAAAGCCT+TGG 0.488850 3_1:+50518863 Msa0360790:CDS
TGCGAGTGAGTGCAAATTGT+TGG 0.491754 3_1:-50520322 None:intergenic
GACCATGTTGATTCCAAACT+AGG 0.495633 3_1:-50520036 None:intergenic
TAGCCAACAATTTCATGCAT+GGG 0.501565 3_1:+50520440 Msa0360790:CDS
TCAATTTGGGCACCAACCAA+TGG 0.503580 3_1:-50520246 None:intergenic
TCCTCTATCCACTCAGAAGA+AGG 0.504881 3_1:-50520690 None:intergenic
AGAGGAAAATAGCAATGAAA+AGG 0.507284 3_1:-50518769 None:intergenic
GAGCCCATGCATGAAATTGT+TGG 0.514086 3_1:-50520443 None:intergenic
TAGAAGATCATCATCCAAAA+GGG 0.514315 3_1:+50518817 Msa0360790:CDS
TAGTCCACGGCCACTTATGA+TGG 0.515675 3_1:-50520281 None:intergenic
TGGAGCCTATTGTGGCAGGT+TGG 0.518996 3_1:+50520148 Msa0360790:CDS
TGGAGACGGGTCAACCCCAT+TGG 0.521376 3_1:+50520230 Msa0360790:CDS
GCCATTGATAATTATGGAGA+CGG 0.521610 3_1:+50520216 Msa0360790:CDS
CAACATGGTCTCATCGAGCA+TGG 0.522244 3_1:+50520049 Msa0360790:CDS
TGGGTCCGGAGTTTACCATT+GGG 0.524693 3_1:+50520194 Msa0360790:CDS
CCCGTCTCCATAATTATCAA+TGG 0.530151 3_1:-50520217 None:intergenic
ACCTTCTTCTGAGTGGATAG+AGG 0.532572 3_1:+50520689 Msa0360790:CDS
AAACTAGGGTCATTGTCCAT+TGG 0.532832 3_1:-50520021 None:intergenic
TTTGCACTCACTCGCACGTA+TGG 0.534993 3_1:+50520329 Msa0360790:CDS
TGCACGACCGCCAATAAAAG+TGG 0.536589 3_1:+50519981 Msa0360790:CDS
AATTTCATGCATGGGCTCAT+GGG 0.536888 3_1:+50520448 Msa0360790:CDS
AATTATTGTTATACGGCGGC+CGG 0.539022 3_1:-50520554 None:intergenic
CATAATTATCAATGGCCCAA+TGG 0.547046 3_1:-50520209 None:intergenic
AGTATCAGTGGTAGTGGTGG+CGG 0.547623 3_1:-50519899 None:intergenic
TAGAGTTCTTTGTGAAAACT+TGG 0.549033 3_1:-50519849 None:intergenic
GTTCGATGGATATGAATATG+TGG 0.552737 3_1:+50520124 Msa0360790:CDS
AAGGCCATCATAAGTGGCCG+TGG 0.552800 3_1:+50520277 Msa0360790:CDS
CATCGAGCATGGGTGACAGT+TGG 0.553692 3_1:+50520060 Msa0360790:CDS
TGGGTGGAGCCTATTGTGGC+AGG 0.553913 3_1:+50520144 Msa0360790:CDS
TTAGCCAACAATTTCATGCA+TGG 0.554178 3_1:+50520439 Msa0360790:CDS
GACGGGTCAACCCCATTGGT+TGG 0.555304 3_1:+50520234 Msa0360790:CDS
ATAGGTATTCCAAGAGAACC+TGG 0.555315 3_1:-50518845 None:intergenic
TATTGTTATACGGCGGCCGG+TGG 0.555619 3_1:-50520551 None:intergenic
CTTTCCAAGGCCATCATAAG+TGG 0.559970 3_1:+50520271 Msa0360790:CDS
TCATCCAAAAGGGTCCCTCC+AGG 0.562655 3_1:+50518827 Msa0360790:CDS
AGCTGGGAAGACACTTGTGT+TGG 0.564987 3_1:-50519819 None:intergenic
AACTGATGCTAACCGTCCAA+TGG 0.569213 3_1:+50520005 Msa0360790:CDS
TGTGTCACGGTCGCAACATG+GGG 0.574793 3_1:+50520524 Msa0360790:CDS
TTGGGGTTAGGCCTAGGTCA+TGG 0.575041 3_1:+50520661 Msa0360790:CDS
GCCCAAATTGAAGCTTTCCA+AGG 0.575990 3_1:+50520258 Msa0360790:CDS
AACATGGTCTCATCGAGCAT+GGG 0.579331 3_1:+50520050 Msa0360790:CDS
GGCATGAGTATCAGTGGTAG+TGG 0.581600 3_1:-50519905 None:intergenic
GGAGAATTGGGATTATGAAG+AGG 0.583835 3_1:-50518787 None:intergenic
AGAGTCCATTAAAGGTTCGA+TGG 0.586164 3_1:+50520110 Msa0360790:CDS
AACTTTGAACAATAGGGTCA+TGG 0.591159 3_1:-50520386 None:intergenic
GTAAGGCTCTTAGAAAGCCA+AGG 0.595623 3_1:-50518880 None:intergenic
AAAACTTGGTGGTGAAAGCT+GGG 0.597144 3_1:-50519835 None:intergenic
TGCAGAGCTACCACGAGCGG+TGG 0.597300 3_1:-50520486 None:intergenic
ACCATGTTGATTCCAAACTA+GGG 0.597315 3_1:-50520035 None:intergenic
CCATTGATAATTATGGAGAC+GGG 0.597890 3_1:+50520217 Msa0360790:CDS
GGGCTCATGGGACAAAGAGT+AGG 0.597966 3_1:+50520460 Msa0360790:CDS
TTCGATGGATATGAATATGT+GGG 0.600883 3_1:+50520125 Msa0360790:CDS
AGCAATTGACGCGAATTCGG+TGG 0.602094 3_1:-50519876 None:intergenic
GAGTAGGCTTCCACCGCTCG+TGG 0.605399 3_1:+50520476 Msa0360790:CDS
GGCAGTGGCATGAGTATCAG+TGG 0.608079 3_1:-50519911 None:intergenic
ATTGCATAGTAAGTGGAGTG+TGG 0.622359 3_1:+50520577 Msa0360790:CDS
GAAGGTTCACTCCATGACCT+AGG 0.625361 3_1:-50520672 None:intergenic
TAGGGTCATTGTCCATTGGA+CGG 0.625760 3_1:-50520017 None:intergenic
ACAGTGGAGTGCTTGTGTCA+CGG 0.633452 3_1:+50520511 Msa0360790:CDS
AGTTCTTTGTGAAAACTTGG+TGG 0.635979 3_1:-50519846 None:intergenic
GTGGTAGCTCTGCAAGACAG+TGG 0.653979 3_1:+50520495 Msa0360790:CDS
AATGGCCCAATGGTAAACTC+CGG 0.657151 3_1:-50520199 None:intergenic
GGAGTGAACCTTCTTCTGAG+TGG 0.663604 3_1:+50520682 Msa0360790:CDS
TCTTGCAGAGCTACCACGAG+CGG 0.668928 3_1:-50520489 None:intergenic
ACCCTAGTTTGGAATCAACA+TGG 0.676174 3_1:+50520034 Msa0360790:CDS
ATGAGTATCAGTGGTAGTGG+TGG 0.676996 3_1:-50519902 None:intergenic
CAATAATTATTGTTATACGG+CGG 0.684485 3_1:-50520558 None:intergenic
TGACGCTTAGTAATAGTCCA+CGG 0.686492 3_1:-50520294 None:intergenic
TATGTGGGTGGAGCCTATTG+TGG 0.686763 3_1:+50520140 Msa0360790:CDS
GTATTCCAAGAGAACCTGGA+GGG 0.687787 3_1:-50518841 None:intergenic
AATTTGGGCACCAACCAATG+GGG 0.702858 3_1:-50520244 None:intergenic
GATGGATATGAATATGTGGG+TGG 0.713715 3_1:+50520128 Msa0360790:CDS
GGTATTCCAAGAGAACCTGG+AGG 0.754694 3_1:-50518842 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTACAAATATTTTTTT+TGG + chr3_1:50519126-50519145 Msa0360790:intron 10.0%
!! AAGAAAAATAATGTAATAAT+AGG - chr3_1:50519250-50519269 None:intergenic 10.0%
!!! TTTTTCATAAAAAACATATA+AGG + chr3_1:50519563-50519582 Msa0360790:intron 10.0%
!!! TATGTTACAAATATTTTTTT+TGG + chr3_1:50519126-50519145 Msa0360790:intron 10.0%
!! AAGAAAAATAATGTAATAAT+AGG - chr3_1:50519250-50519269 None:intergenic 10.0%
!!! TTTTTCATAAAAAACATATA+AGG + chr3_1:50519563-50519582 Msa0360790:intron 10.0%
!! TAATGTAATAATAGGAAAAT+AGG - chr3_1:50519242-50519261 None:intergenic 15.0%
!! TTTATGAAAAAAGATACATA+GGG - chr3_1:50519554-50519573 None:intergenic 15.0%
!!! TTTTATGAAAAAAGATACAT+AGG - chr3_1:50519555-50519574 None:intergenic 15.0%
!! ATGCAATAATTATTGTTATA+CGG - chr3_1:50520564-50520583 None:intergenic 15.0%
!!! ATGATATTGTATTTTAAACT+TGG + chr3_1:50520642-50520661 Msa0360790:CDS 15.0%
!!! TGATATTGTATTTTAAACTT+GGG + chr3_1:50520643-50520662 Msa0360790:CDS 15.0%
!! TAATGTAATAATAGGAAAAT+AGG - chr3_1:50519242-50519261 None:intergenic 15.0%
!! TTTATGAAAAAAGATACATA+GGG - chr3_1:50519554-50519573 None:intergenic 15.0%
!!! TTTTATGAAAAAAGATACAT+AGG - chr3_1:50519555-50519574 None:intergenic 15.0%
!! ATGCAATAATTATTGTTATA+CGG - chr3_1:50520564-50520583 None:intergenic 15.0%
!!! ATGATATTGTATTTTAAACT+TGG + chr3_1:50520642-50520661 Msa0360790:CDS 15.0%
!!! TGATATTGTATTTTAAACTT+GGG + chr3_1:50520643-50520662 Msa0360790:CDS 15.0%
!!! TTTTTTTTTTTGAAAGACAG+AGG - chr3_1:50519063-50519082 None:intergenic 20.0%
!!! TTTTGGTTTTCTTTCATTTT+TGG + chr3_1:50519143-50519162 Msa0360790:intron 20.0%
!! TTAAGGTTTAAAAGTCATAT+AGG - chr3_1:50519443-50519462 None:intergenic 20.0%
!!! AAAGTATGTTGTTTTTTGAT+TGG - chr3_1:50519477-50519496 None:intergenic 20.0%
!! ATCAAAAAACAACATACTTT+AGG + chr3_1:50519477-50519496 Msa0360790:intron 20.0%
!! TCAAAAAACAACATACTTTA+GGG + chr3_1:50519478-50519497 Msa0360790:intron 20.0%
!! AATAATTATTGCATAGTAAG+TGG + chr3_1:50520570-50520589 Msa0360790:CDS 20.0%
!!! GATATTGTATTTTAAACTTG+GGG + chr3_1:50520644-50520663 Msa0360790:CDS 20.0%
!!! TTTTTTTTTTTGAAAGACAG+AGG - chr3_1:50519063-50519082 None:intergenic 20.0%
!!! TTTTGGTTTTCTTTCATTTT+TGG + chr3_1:50519143-50519162 Msa0360790:intron 20.0%
!! TTAAGGTTTAAAAGTCATAT+AGG - chr3_1:50519443-50519462 None:intergenic 20.0%
!!! AAAGTATGTTGTTTTTTGAT+TGG - chr3_1:50519477-50519496 None:intergenic 20.0%
!! ATCAAAAAACAACATACTTT+AGG + chr3_1:50519477-50519496 Msa0360790:intron 20.0%
!! TCAAAAAACAACATACTTTA+GGG + chr3_1:50519478-50519497 Msa0360790:intron 20.0%
!! AATAATTATTGCATAGTAAG+TGG + chr3_1:50520570-50520589 Msa0360790:CDS 20.0%
!!! GATATTGTATTTTAAACTTG+GGG + chr3_1:50520644-50520663 Msa0360790:CDS 20.0%
! CAAGAAAGAGTAAAGAAATA+TGG + chr3_1:50518929-50518948 Msa0360790:CDS 25.0%
!! AAACCAACAGTTTTTATTCA+TGG + chr3_1:50518980-50518999 Msa0360790:CDS 25.0%
! AAGTTTATATTCACCAATGA+TGG + chr3_1:50519016-50519035 Msa0360790:CDS 25.0%
! AGCTATGTCACAAAAAAAAT+TGG + chr3_1:50519376-50519395 Msa0360790:intron 25.0%
! ATGTCACAAAAAAAATTGGT+AGG + chr3_1:50519380-50519399 Msa0360790:intron 25.0%
! ATGAAGAAGTTATGTATTTG+TGG - chr3_1:50519688-50519707 None:intergenic 25.0%
! ATGATCAATTGATTAGCATT+GGG - chr3_1:50519949-50519968 None:intergenic 25.0%
! AATGATCAATTGATTAGCAT+TGG - chr3_1:50519950-50519969 None:intergenic 25.0%
! CAACAAAACTTTGAACAATA+GGG - chr3_1:50520395-50520414 None:intergenic 25.0%
!!! CTATTGTTCAAAGTTTTGTT+GGG + chr3_1:50520394-50520413 Msa0360790:CDS 25.0%
!!! TATTGTTCAAAGTTTTGTTG+GGG + chr3_1:50520395-50520414 Msa0360790:CDS 25.0%
! CAATAATTATTGTTATACGG+CGG - chr3_1:50520561-50520580 None:intergenic 25.0%
! CAAGAAAGAGTAAAGAAATA+TGG + chr3_1:50518929-50518948 Msa0360790:CDS 25.0%
!! AAACCAACAGTTTTTATTCA+TGG + chr3_1:50518980-50518999 Msa0360790:CDS 25.0%
! AAGTTTATATTCACCAATGA+TGG + chr3_1:50519016-50519035 Msa0360790:CDS 25.0%
! AGCTATGTCACAAAAAAAAT+TGG + chr3_1:50519376-50519395 Msa0360790:intron 25.0%
! ATGTCACAAAAAAAATTGGT+AGG + chr3_1:50519380-50519399 Msa0360790:intron 25.0%
! ATGAAGAAGTTATGTATTTG+TGG - chr3_1:50519688-50519707 None:intergenic 25.0%
! ATGATCAATTGATTAGCATT+GGG - chr3_1:50519949-50519968 None:intergenic 25.0%
! AATGATCAATTGATTAGCAT+TGG - chr3_1:50519950-50519969 None:intergenic 25.0%
! CAACAAAACTTTGAACAATA+GGG - chr3_1:50520395-50520414 None:intergenic 25.0%
!!! CTATTGTTCAAAGTTTTGTT+GGG + chr3_1:50520394-50520413 Msa0360790:CDS 25.0%
!!! TATTGTTCAAAGTTTTGTTG+GGG + chr3_1:50520395-50520414 Msa0360790:CDS 25.0%
! CAATAATTATTGTTATACGG+CGG - chr3_1:50520561-50520580 None:intergenic 25.0%
AGAGGAAAATAGCAATGAAA+AGG - chr3_1:50518772-50518791 None:intergenic 30.0%
TTCTAAGTAGAAGGAGAATT+GGG - chr3_1:50518802-50518821 None:intergenic 30.0%
ATGATGATCTTCTAAGTAGA+AGG - chr3_1:50518811-50518830 None:intergenic 30.0%
TTAGAAGATCATCATCCAAA+AGG + chr3_1:50518816-50518835 Msa0360790:CDS 30.0%
TAGAAGATCATCATCCAAAA+GGG + chr3_1:50518817-50518836 Msa0360790:CDS 30.0%
GTTTCAAAGCTAAGTCTATT+TGG + chr3_1:50518956-50518975 Msa0360790:CDS 30.0%
TGTCCATGAATAAAAACTGT+TGG - chr3_1:50518986-50519005 None:intergenic 30.0%
! ACAGTTTTTATTCATGGACA+AGG + chr3_1:50518986-50519005 Msa0360790:CDS 30.0%
TCACAAAAAAAATTGGTAGG+TGG + chr3_1:50519383-50519402 Msa0360790:intron 30.0%
AAAGTCATATAGGAAACGAT+TGG - chr3_1:50519433-50519452 None:intergenic 30.0%
!!! AAGGATGCTATACTTTTTTG+TGG - chr3_1:50519505-50519524 None:intergenic 30.0%
TAGAGTTCTTTGTGAAAACT+TGG - chr3_1:50519852-50519871 None:intergenic 30.0%
TTCGATGGATATGAATATGT+GGG + chr3_1:50520125-50520144 Msa0360790:CDS 30.0%
TCATGGAAAAGAAGATTGAT+AGG - chr3_1:50520372-50520391 None:intergenic 30.0%
CCAACAAAACTTTGAACAAT+AGG - chr3_1:50520396-50520415 None:intergenic 30.0%
!! CCTATTGTTCAAAGTTTTGT+TGG + chr3_1:50520393-50520412 Msa0360790:CDS 30.0%
TTGGCTAAACATAATACAAC+CGG - chr3_1:50520427-50520446 None:intergenic 30.0%
!!! AACTAAAGCTTTTGAAGCTA+TGG + chr3_1:50520617-50520636 Msa0360790:CDS 30.0%
!! TGTATTTTAAACTTGGGGTT+AGG + chr3_1:50520649-50520668 Msa0360790:CDS 30.0%
AGAGGAAAATAGCAATGAAA+AGG - chr3_1:50518772-50518791 None:intergenic 30.0%
TTCTAAGTAGAAGGAGAATT+GGG - chr3_1:50518802-50518821 None:intergenic 30.0%
ATGATGATCTTCTAAGTAGA+AGG - chr3_1:50518811-50518830 None:intergenic 30.0%
TTAGAAGATCATCATCCAAA+AGG + chr3_1:50518816-50518835 Msa0360790:CDS 30.0%
TAGAAGATCATCATCCAAAA+GGG + chr3_1:50518817-50518836 Msa0360790:CDS 30.0%
GTTTCAAAGCTAAGTCTATT+TGG + chr3_1:50518956-50518975 Msa0360790:CDS 30.0%
TGTCCATGAATAAAAACTGT+TGG - chr3_1:50518986-50519005 None:intergenic 30.0%
! ACAGTTTTTATTCATGGACA+AGG + chr3_1:50518986-50519005 Msa0360790:CDS 30.0%
TCACAAAAAAAATTGGTAGG+TGG + chr3_1:50519383-50519402 Msa0360790:intron 30.0%
AAAGTCATATAGGAAACGAT+TGG - chr3_1:50519433-50519452 None:intergenic 30.0%
!!! AAGGATGCTATACTTTTTTG+TGG - chr3_1:50519505-50519524 None:intergenic 30.0%
TAGAGTTCTTTGTGAAAACT+TGG - chr3_1:50519852-50519871 None:intergenic 30.0%
TTCGATGGATATGAATATGT+GGG + chr3_1:50520125-50520144 Msa0360790:CDS 30.0%
TCATGGAAAAGAAGATTGAT+AGG - chr3_1:50520372-50520391 None:intergenic 30.0%
CCAACAAAACTTTGAACAAT+AGG - chr3_1:50520396-50520415 None:intergenic 30.0%
!! CCTATTGTTCAAAGTTTTGT+TGG + chr3_1:50520393-50520412 Msa0360790:CDS 30.0%
TTGGCTAAACATAATACAAC+CGG - chr3_1:50520427-50520446 None:intergenic 30.0%
!!! AACTAAAGCTTTTGAAGCTA+TGG + chr3_1:50520617-50520636 Msa0360790:CDS 30.0%
!! TGTATTTTAAACTTGGGGTT+AGG + chr3_1:50520649-50520668 Msa0360790:CDS 30.0%
CTTCTAAGTAGAAGGAGAAT+TGG - chr3_1:50518803-50518822 None:intergenic 35.0%
TCTCTTGGAATACCTATCAT+TGG + chr3_1:50518851-50518870 Msa0360790:CDS 35.0%
GTAACAACACAGCAGAAAAA+TGG + chr3_1:50518903-50518922 Msa0360790:CDS 35.0%
GAACAATTTGGTACCATCAT+TGG - chr3_1:50519032-50519051 None:intergenic 35.0%
TAAATTAACGGCCATAAGCT+TGG + chr3_1:50519194-50519213 Msa0360790:intron 35.0%
CATCTTCAACTTGTATTTCG+TGG + chr3_1:50519299-50519318 Msa0360790:intron 35.0%
TGGAGATAGAGGCTAATATA+AGG - chr3_1:50519336-50519355 None:intergenic 35.0%
GAATTGAATGCCAACAAATG+TGG - chr3_1:50519356-50519375 None:intergenic 35.0%
CTACAAATAGTAGTGGTTGT+AGG - chr3_1:50519715-50519734 None:intergenic 35.0%
TGTGTAGCTACAAATAGTAG+TGG - chr3_1:50519722-50519741 None:intergenic 35.0%
AAGGAAGACATTGTAGAAGT+TGG - chr3_1:50519796-50519815 None:intergenic 35.0%
AGTTCTTTGTGAAAACTTGG+TGG - chr3_1:50519849-50519868 None:intergenic 35.0%
!! TCAGTTACCACTTTTATTGG+CGG - chr3_1:50519991-50520010 None:intergenic 35.0%
!! GCATCAGTTACCACTTTTAT+TGG - chr3_1:50519994-50520013 None:intergenic 35.0%
!! ACCATGTTGATTCCAAACTA+GGG - chr3_1:50520038-50520057 None:intergenic 35.0%
ACAACATTGCTCATTTCGTT+GGG + chr3_1:50520087-50520106 Msa0360790:CDS 35.0%
CATATCCATCGAACCTTTAA+TGG - chr3_1:50520118-50520137 None:intergenic 35.0%
GTTCGATGGATATGAATATG+TGG + chr3_1:50520124-50520143 Msa0360790:CDS 35.0%
GTTACATCTTAGCTGATCTT+GGG + chr3_1:50520175-50520194 Msa0360790:CDS 35.0%
CATAATTATCAATGGCCCAA+TGG - chr3_1:50520212-50520231 None:intergenic 35.0%
! CATTGGGCCATTGATAATTA+TGG + chr3_1:50520210-50520229 Msa0360790:CDS 35.0%
! GCCATTGATAATTATGGAGA+CGG + chr3_1:50520216-50520235 Msa0360790:CDS 35.0%
! CCATTGATAATTATGGAGAC+GGG + chr3_1:50520217-50520236 Msa0360790:CDS 35.0%
AACTTTGAACAATAGGGTCA+TGG - chr3_1:50520389-50520408 None:intergenic 35.0%
TTAGCCAACAATTTCATGCA+TGG + chr3_1:50520439-50520458 Msa0360790:CDS 35.0%
TAGCCAACAATTTCATGCAT+GGG + chr3_1:50520440-50520459 Msa0360790:CDS 35.0%
CTTCTAAGTAGAAGGAGAAT+TGG - chr3_1:50518803-50518822 None:intergenic 35.0%
TCTCTTGGAATACCTATCAT+TGG + chr3_1:50518851-50518870 Msa0360790:CDS 35.0%
GTAACAACACAGCAGAAAAA+TGG + chr3_1:50518903-50518922 Msa0360790:CDS 35.0%
GAACAATTTGGTACCATCAT+TGG - chr3_1:50519032-50519051 None:intergenic 35.0%
TAAATTAACGGCCATAAGCT+TGG + chr3_1:50519194-50519213 Msa0360790:intron 35.0%
CATCTTCAACTTGTATTTCG+TGG + chr3_1:50519299-50519318 Msa0360790:intron 35.0%
TGGAGATAGAGGCTAATATA+AGG - chr3_1:50519336-50519355 None:intergenic 35.0%
GAATTGAATGCCAACAAATG+TGG - chr3_1:50519356-50519375 None:intergenic 35.0%
CTACAAATAGTAGTGGTTGT+AGG - chr3_1:50519715-50519734 None:intergenic 35.0%
TGTGTAGCTACAAATAGTAG+TGG - chr3_1:50519722-50519741 None:intergenic 35.0%
AAGGAAGACATTGTAGAAGT+TGG - chr3_1:50519796-50519815 None:intergenic 35.0%
AGTTCTTTGTGAAAACTTGG+TGG - chr3_1:50519849-50519868 None:intergenic 35.0%
!! TCAGTTACCACTTTTATTGG+CGG - chr3_1:50519991-50520010 None:intergenic 35.0%
!! GCATCAGTTACCACTTTTAT+TGG - chr3_1:50519994-50520013 None:intergenic 35.0%
!! ACCATGTTGATTCCAAACTA+GGG - chr3_1:50520038-50520057 None:intergenic 35.0%
ACAACATTGCTCATTTCGTT+GGG + chr3_1:50520087-50520106 Msa0360790:CDS 35.0%
CATATCCATCGAACCTTTAA+TGG - chr3_1:50520118-50520137 None:intergenic 35.0%
GTTCGATGGATATGAATATG+TGG + chr3_1:50520124-50520143 Msa0360790:CDS 35.0%
GTTACATCTTAGCTGATCTT+GGG + chr3_1:50520175-50520194 Msa0360790:CDS 35.0%
CATAATTATCAATGGCCCAA+TGG - chr3_1:50520212-50520231 None:intergenic 35.0%
! CATTGGGCCATTGATAATTA+TGG + chr3_1:50520210-50520229 Msa0360790:CDS 35.0%
! GCCATTGATAATTATGGAGA+CGG + chr3_1:50520216-50520235 Msa0360790:CDS 35.0%
! CCATTGATAATTATGGAGAC+GGG + chr3_1:50520217-50520236 Msa0360790:CDS 35.0%
AACTTTGAACAATAGGGTCA+TGG - chr3_1:50520389-50520408 None:intergenic 35.0%
TTAGCCAACAATTTCATGCA+TGG + chr3_1:50520439-50520458 Msa0360790:CDS 35.0%
TAGCCAACAATTTCATGCAT+GGG + chr3_1:50520440-50520459 Msa0360790:CDS 35.0%
GGAGAATTGGGATTATGAAG+AGG - chr3_1:50518790-50518809 None:intergenic 40.0%
ATAGGTATTCCAAGAGAACC+TGG - chr3_1:50518848-50518867 None:intergenic 40.0%
! TTCTGCTGTGTTGTTACGTA+AGG - chr3_1:50518900-50518919 None:intergenic 40.0%
!! TTTTGAAAGACAGAGGTTGC+TGG - chr3_1:50519056-50519075 None:intergenic 40.0%
GATTGGATTCGTGTAGCTTA+AGG - chr3_1:50519460-50519479 None:intergenic 40.0%
!! GATGTGTTGCTTGGACTAAA+AGG - chr3_1:50519524-50519543 None:intergenic 40.0%
!! AAATAGTGTGGTGGACAATG+AGG - chr3_1:50519659-50519678 None:intergenic 40.0%
! TTGTGGAAGCACAAATAGTG+TGG - chr3_1:50519671-50519690 None:intergenic 40.0%
AGAAGTTGGAGAGGAATCAA+AGG - chr3_1:50519782-50519801 None:intergenic 40.0%
AGACATTGTAGAAGTTGGAG+AGG - chr3_1:50519791-50519810 None:intergenic 40.0%
AAGACACTTGTGTTGGACTA+AGG - chr3_1:50519815-50519834 None:intergenic 40.0%
!! AAAACTTGGTGGTGAAAGCT+GGG - chr3_1:50519838-50519857 None:intergenic 40.0%
! CAATTGATTAGCATTGGGCT+TGG - chr3_1:50519944-50519963 None:intergenic 40.0%
AAACTAGGGTCATTGTCCAT+TGG - chr3_1:50520024-50520043 None:intergenic 40.0%
AATGGACAATGACCCTAGTT+TGG + chr3_1:50520023-50520042 Msa0360790:CDS 40.0%
! ACCCTAGTTTGGAATCAACA+TGG + chr3_1:50520034-50520053 Msa0360790:CDS 40.0%
!! GACCATGTTGATTCCAAACT+AGG - chr3_1:50520039-50520058 None:intergenic 40.0%
CACAACATTGCTCATTTCGT+TGG + chr3_1:50520086-50520105 Msa0360790:CDS 40.0%
AGAGTCCATTAAAGGTTCGA+TGG + chr3_1:50520110-50520129 Msa0360790:CDS 40.0%
GATGGATATGAATATGTGGG+TGG + chr3_1:50520128-50520147 Msa0360790:CDS 40.0%
GGTTACATCTTAGCTGATCT+TGG + chr3_1:50520174-50520193 Msa0360790:CDS 40.0%
CCCGTCTCCATAATTATCAA+TGG - chr3_1:50520220-50520239 None:intergenic 40.0%
GCCTTGGAAAGCTTCAATTT+GGG - chr3_1:50520262-50520281 None:intergenic 40.0%
TGACGCTTAGTAATAGTCCA+CGG - chr3_1:50520297-50520316 None:intergenic 40.0%
AATTTCATGCATGGGCTCAT+GGG + chr3_1:50520448-50520467 Msa0360790:CDS 40.0%
AATTATTGTTATACGGCGGC+CGG - chr3_1:50520557-50520576 None:intergenic 40.0%
ATTGCATAGTAAGTGGAGTG+TGG + chr3_1:50520577-50520596 Msa0360790:CDS 40.0%
GGAGAATTGGGATTATGAAG+AGG - chr3_1:50518790-50518809 None:intergenic 40.0%
ATAGGTATTCCAAGAGAACC+TGG - chr3_1:50518848-50518867 None:intergenic 40.0%
! TTCTGCTGTGTTGTTACGTA+AGG - chr3_1:50518900-50518919 None:intergenic 40.0%
!! TTTTGAAAGACAGAGGTTGC+TGG - chr3_1:50519056-50519075 None:intergenic 40.0%
GATTGGATTCGTGTAGCTTA+AGG - chr3_1:50519460-50519479 None:intergenic 40.0%
!! GATGTGTTGCTTGGACTAAA+AGG - chr3_1:50519524-50519543 None:intergenic 40.0%
!! AAATAGTGTGGTGGACAATG+AGG - chr3_1:50519659-50519678 None:intergenic 40.0%
! TTGTGGAAGCACAAATAGTG+TGG - chr3_1:50519671-50519690 None:intergenic 40.0%
AGAAGTTGGAGAGGAATCAA+AGG - chr3_1:50519782-50519801 None:intergenic 40.0%
AGACATTGTAGAAGTTGGAG+AGG - chr3_1:50519791-50519810 None:intergenic 40.0%
AAGACACTTGTGTTGGACTA+AGG - chr3_1:50519815-50519834 None:intergenic 40.0%
!! AAAACTTGGTGGTGAAAGCT+GGG - chr3_1:50519838-50519857 None:intergenic 40.0%
! CAATTGATTAGCATTGGGCT+TGG - chr3_1:50519944-50519963 None:intergenic 40.0%
AAACTAGGGTCATTGTCCAT+TGG - chr3_1:50520024-50520043 None:intergenic 40.0%
AATGGACAATGACCCTAGTT+TGG + chr3_1:50520023-50520042 Msa0360790:CDS 40.0%
! ACCCTAGTTTGGAATCAACA+TGG + chr3_1:50520034-50520053 Msa0360790:CDS 40.0%
!! GACCATGTTGATTCCAAACT+AGG - chr3_1:50520039-50520058 None:intergenic 40.0%
CACAACATTGCTCATTTCGT+TGG + chr3_1:50520086-50520105 Msa0360790:CDS 40.0%
AGAGTCCATTAAAGGTTCGA+TGG + chr3_1:50520110-50520129 Msa0360790:CDS 40.0%
GATGGATATGAATATGTGGG+TGG + chr3_1:50520128-50520147 Msa0360790:CDS 40.0%
GGTTACATCTTAGCTGATCT+TGG + chr3_1:50520174-50520193 Msa0360790:CDS 40.0%
CCCGTCTCCATAATTATCAA+TGG - chr3_1:50520220-50520239 None:intergenic 40.0%
GCCTTGGAAAGCTTCAATTT+GGG - chr3_1:50520262-50520281 None:intergenic 40.0%
TGACGCTTAGTAATAGTCCA+CGG - chr3_1:50520297-50520316 None:intergenic 40.0%
AATTTCATGCATGGGCTCAT+GGG + chr3_1:50520448-50520467 Msa0360790:CDS 40.0%
AATTATTGTTATACGGCGGC+CGG - chr3_1:50520557-50520576 None:intergenic 40.0%
ATTGCATAGTAAGTGGAGTG+TGG + chr3_1:50520577-50520596 Msa0360790:CDS 40.0%
GTATTCCAAGAGAACCTGGA+GGG - chr3_1:50518844-50518863 None:intergenic 45.0%
! CCAAGGCTTTGACCAATGAT+AGG - chr3_1:50518866-50518885 None:intergenic 45.0%
CCTATCATTGGTCAAAGCCT+TGG + chr3_1:50518863-50518882 Msa0360790:CDS 45.0%
GTAAGGCTCTTAGAAAGCCA+AGG - chr3_1:50518883-50518902 None:intergenic 45.0%
GAGGTTGCTGGTGAACAATT+TGG - chr3_1:50519044-50519063 None:intergenic 45.0%
!! CGTGAAAGCATCCAAGCTTA+TGG - chr3_1:50519208-50519227 None:intergenic 45.0%
AGCTTGGATGCTTTCACGAT+TGG + chr3_1:50519210-50519229 Msa0360790:intron 45.0%
GCCTCTATCTCCACATTTGT+TGG + chr3_1:50519343-50519362 Msa0360790:intron 45.0%
GCCAACAAATGTGGAGATAG+AGG - chr3_1:50519347-50519366 None:intergenic 45.0%
! GGCAATCTTGATGTGTTGCT+TGG - chr3_1:50519533-50519552 None:intergenic 45.0%
! TGGAAGCACAAATAGTGTGG+TGG - chr3_1:50519668-50519687 None:intergenic 45.0%
CTTGTGTGAAAGAGAGCTAG+TGG - chr3_1:50519759-50519778 None:intergenic 45.0%
!! GAAAACTTGGTGGTGAAAGC+TGG - chr3_1:50519839-50519858 None:intergenic 45.0%
!! ATGAGTATCAGTGGTAGTGG+TGG - chr3_1:50519905-50519924 None:intergenic 45.0%
AACTGATGCTAACCGTCCAA+TGG + chr3_1:50520005-50520024 Msa0360790:CDS 45.0%
TAGGGTCATTGTCCATTGGA+CGG - chr3_1:50520020-50520039 None:intergenic 45.0%
AACATGGTCTCATCGAGCAT+GGG + chr3_1:50520050-50520069 Msa0360790:CDS 45.0%
TCGTTGGGAGAGTCCATTAA+AGG + chr3_1:50520102-50520121 Msa0360790:CDS 45.0%
ATCTTAGCTGATCTTGGGTC+CGG + chr3_1:50520180-50520199 Msa0360790:CDS 45.0%
AATGGCCCAATGGTAAACTC+CGG - chr3_1:50520202-50520221 None:intergenic 45.0%
AATTTGGGCACCAACCAATG+GGG - chr3_1:50520247-50520266 None:intergenic 45.0%
CAATTTGGGCACCAACCAAT+GGG - chr3_1:50520248-50520267 None:intergenic 45.0%
TCAATTTGGGCACCAACCAA+TGG - chr3_1:50520249-50520268 None:intergenic 45.0%
GCCCAAATTGAAGCTTTCCA+AGG + chr3_1:50520258-50520277 Msa0360790:CDS 45.0%
GGCCTTGGAAAGCTTCAATT+TGG - chr3_1:50520263-50520282 None:intergenic 45.0%
CTTTCCAAGGCCATCATAAG+TGG + chr3_1:50520271-50520290 Msa0360790:CDS 45.0%
TGCGAGTGAGTGCAAATTGT+TGG - chr3_1:50520325-50520344 None:intergenic 45.0%
GAGCCCATGCATGAAATTGT+TGG - chr3_1:50520446-50520465 None:intergenic 45.0%
CAATTTCATGCATGGGCTCA+TGG + chr3_1:50520447-50520466 Msa0360790:CDS 45.0%
TGGAGTGTGGAATGAGTTGT+TGG + chr3_1:50520590-50520609 Msa0360790:CDS 45.0%
TTAAACTTGGGGTTAGGCCT+AGG + chr3_1:50520655-50520674 Msa0360790:CDS 45.0%
ACCTTCTTCTGAGTGGATAG+AGG + chr3_1:50520689-50520708 Msa0360790:CDS 45.0%
TCCTCTATCCACTCAGAAGA+AGG - chr3_1:50520693-50520712 None:intergenic 45.0%
GTATTCCAAGAGAACCTGGA+GGG - chr3_1:50518844-50518863 None:intergenic 45.0%
! CCAAGGCTTTGACCAATGAT+AGG - chr3_1:50518866-50518885 None:intergenic 45.0%
CCTATCATTGGTCAAAGCCT+TGG + chr3_1:50518863-50518882 Msa0360790:CDS 45.0%
GTAAGGCTCTTAGAAAGCCA+AGG - chr3_1:50518883-50518902 None:intergenic 45.0%
GAGGTTGCTGGTGAACAATT+TGG - chr3_1:50519044-50519063 None:intergenic 45.0%
!! CGTGAAAGCATCCAAGCTTA+TGG - chr3_1:50519208-50519227 None:intergenic 45.0%
AGCTTGGATGCTTTCACGAT+TGG + chr3_1:50519210-50519229 Msa0360790:intron 45.0%
GCCTCTATCTCCACATTTGT+TGG + chr3_1:50519343-50519362 Msa0360790:intron 45.0%
GCCAACAAATGTGGAGATAG+AGG - chr3_1:50519347-50519366 None:intergenic 45.0%
! GGCAATCTTGATGTGTTGCT+TGG - chr3_1:50519533-50519552 None:intergenic 45.0%
! TGGAAGCACAAATAGTGTGG+TGG - chr3_1:50519668-50519687 None:intergenic 45.0%
CTTGTGTGAAAGAGAGCTAG+TGG - chr3_1:50519759-50519778 None:intergenic 45.0%
!! GAAAACTTGGTGGTGAAAGC+TGG - chr3_1:50519839-50519858 None:intergenic 45.0%
!! ATGAGTATCAGTGGTAGTGG+TGG - chr3_1:50519905-50519924 None:intergenic 45.0%
AACTGATGCTAACCGTCCAA+TGG + chr3_1:50520005-50520024 Msa0360790:CDS 45.0%
TAGGGTCATTGTCCATTGGA+CGG - chr3_1:50520020-50520039 None:intergenic 45.0%
AACATGGTCTCATCGAGCAT+GGG + chr3_1:50520050-50520069 Msa0360790:CDS 45.0%
TCGTTGGGAGAGTCCATTAA+AGG + chr3_1:50520102-50520121 Msa0360790:CDS 45.0%
ATCTTAGCTGATCTTGGGTC+CGG + chr3_1:50520180-50520199 Msa0360790:CDS 45.0%
AATGGCCCAATGGTAAACTC+CGG - chr3_1:50520202-50520221 None:intergenic 45.0%
AATTTGGGCACCAACCAATG+GGG - chr3_1:50520247-50520266 None:intergenic 45.0%
CAATTTGGGCACCAACCAAT+GGG - chr3_1:50520248-50520267 None:intergenic 45.0%
TCAATTTGGGCACCAACCAA+TGG - chr3_1:50520249-50520268 None:intergenic 45.0%
GCCCAAATTGAAGCTTTCCA+AGG + chr3_1:50520258-50520277 Msa0360790:CDS 45.0%
GGCCTTGGAAAGCTTCAATT+TGG - chr3_1:50520263-50520282 None:intergenic 45.0%
CTTTCCAAGGCCATCATAAG+TGG + chr3_1:50520271-50520290 Msa0360790:CDS 45.0%
TGCGAGTGAGTGCAAATTGT+TGG - chr3_1:50520325-50520344 None:intergenic 45.0%
GAGCCCATGCATGAAATTGT+TGG - chr3_1:50520446-50520465 None:intergenic 45.0%
CAATTTCATGCATGGGCTCA+TGG + chr3_1:50520447-50520466 Msa0360790:CDS 45.0%
TGGAGTGTGGAATGAGTTGT+TGG + chr3_1:50520590-50520609 Msa0360790:CDS 45.0%
TTAAACTTGGGGTTAGGCCT+AGG + chr3_1:50520655-50520674 Msa0360790:CDS 45.0%
ACCTTCTTCTGAGTGGATAG+AGG + chr3_1:50520689-50520708 Msa0360790:CDS 45.0%
TCCTCTATCCACTCAGAAGA+AGG - chr3_1:50520693-50520712 None:intergenic 45.0%
!!! AACTTTTTAATTTAAATTAA+CGG + chr3_1:50519182-50519201 Msa0360790:intron 5.0%
!!! AACTTTTTAATTTAAATTAA+CGG + chr3_1:50519182-50519201 Msa0360790:intron 5.0%
GGTATTCCAAGAGAACCTGG+AGG - chr3_1:50518845-50518864 None:intergenic 50.0%
AGCTGGGAAGACACTTGTGT+TGG - chr3_1:50519822-50519841 None:intergenic 50.0%
AGCAATTGACGCGAATTCGG+TGG - chr3_1:50519879-50519898 None:intergenic 50.0%
CGGAGCAATTGACGCGAATT+CGG - chr3_1:50519882-50519901 None:intergenic 50.0%
!! AGTATCAGTGGTAGTGGTGG+CGG - chr3_1:50519902-50519921 None:intergenic 50.0%
GGCATGAGTATCAGTGGTAG+TGG - chr3_1:50519908-50519927 None:intergenic 50.0%
! AGCATTGGGCTTGGACTTCA+GGG - chr3_1:50519935-50519954 None:intergenic 50.0%
! TAGCATTGGGCTTGGACTTC+AGG - chr3_1:50519936-50519955 None:intergenic 50.0%
ATTGGCGGTCGTGCAAGTTT+CGG - chr3_1:50519976-50519995 None:intergenic 50.0%
TGCACGACCGCCAATAAAAG+TGG + chr3_1:50519981-50520000 Msa0360790:CDS 50.0%
CAACATGGTCTCATCGAGCA+TGG + chr3_1:50520049-50520068 Msa0360790:CDS 50.0%
TATGTGGGTGGAGCCTATTG+TGG + chr3_1:50520140-50520159 Msa0360790:CDS 50.0%
CCAATCCAACCTGCCACAAT+AGG - chr3_1:50520156-50520175 None:intergenic 50.0%
! CCTATTGTGGCAGGTTGGAT+TGG + chr3_1:50520153-50520172 Msa0360790:CDS 50.0%
TTGGGTCCGGAGTTTACCAT+TGG + chr3_1:50520193-50520212 Msa0360790:CDS 50.0%
TGGGTCCGGAGTTTACCATT+GGG + chr3_1:50520194-50520213 Msa0360790:CDS 50.0%
TAGTCCACGGCCACTTATGA+TGG - chr3_1:50520284-50520303 None:intergenic 50.0%
TTTGCACTCACTCGCACGTA+TGG + chr3_1:50520329-50520348 Msa0360790:CDS 50.0%
!!! AGTTTTGTTGGGGTGTGTGC+CGG + chr3_1:50520405-50520424 Msa0360790:CDS 50.0%
! ACAGTGGAGTGCTTGTGTCA+CGG + chr3_1:50520511-50520530 Msa0360790:CDS 50.0%
TTGTGTCACGGTCGCAACAT+GGG + chr3_1:50520523-50520542 Msa0360790:CDS 50.0%
GAAGGTTCACTCCATGACCT+AGG - chr3_1:50520675-50520694 None:intergenic 50.0%
GGAGTGAACCTTCTTCTGAG+TGG + chr3_1:50520682-50520701 Msa0360790:CDS 50.0%
GGTATTCCAAGAGAACCTGG+AGG - chr3_1:50518845-50518864 None:intergenic 50.0%
AGCTGGGAAGACACTTGTGT+TGG - chr3_1:50519822-50519841 None:intergenic 50.0%
AGCAATTGACGCGAATTCGG+TGG - chr3_1:50519879-50519898 None:intergenic 50.0%
CGGAGCAATTGACGCGAATT+CGG - chr3_1:50519882-50519901 None:intergenic 50.0%
!! AGTATCAGTGGTAGTGGTGG+CGG - chr3_1:50519902-50519921 None:intergenic 50.0%
GGCATGAGTATCAGTGGTAG+TGG - chr3_1:50519908-50519927 None:intergenic 50.0%
! AGCATTGGGCTTGGACTTCA+GGG - chr3_1:50519935-50519954 None:intergenic 50.0%
! TAGCATTGGGCTTGGACTTC+AGG - chr3_1:50519936-50519955 None:intergenic 50.0%
ATTGGCGGTCGTGCAAGTTT+CGG - chr3_1:50519976-50519995 None:intergenic 50.0%
TGCACGACCGCCAATAAAAG+TGG + chr3_1:50519981-50520000 Msa0360790:CDS 50.0%
CAACATGGTCTCATCGAGCA+TGG + chr3_1:50520049-50520068 Msa0360790:CDS 50.0%
TATGTGGGTGGAGCCTATTG+TGG + chr3_1:50520140-50520159 Msa0360790:CDS 50.0%
CCAATCCAACCTGCCACAAT+AGG - chr3_1:50520156-50520175 None:intergenic 50.0%
! CCTATTGTGGCAGGTTGGAT+TGG + chr3_1:50520153-50520172 Msa0360790:CDS 50.0%
TTGGGTCCGGAGTTTACCAT+TGG + chr3_1:50520193-50520212 Msa0360790:CDS 50.0%
TGGGTCCGGAGTTTACCATT+GGG + chr3_1:50520194-50520213 Msa0360790:CDS 50.0%
TAGTCCACGGCCACTTATGA+TGG - chr3_1:50520284-50520303 None:intergenic 50.0%
TTTGCACTCACTCGCACGTA+TGG + chr3_1:50520329-50520348 Msa0360790:CDS 50.0%
!!! AGTTTTGTTGGGGTGTGTGC+CGG + chr3_1:50520405-50520424 Msa0360790:CDS 50.0%
! ACAGTGGAGTGCTTGTGTCA+CGG + chr3_1:50520511-50520530 Msa0360790:CDS 50.0%
TTGTGTCACGGTCGCAACAT+GGG + chr3_1:50520523-50520542 Msa0360790:CDS 50.0%
GAAGGTTCACTCCATGACCT+AGG - chr3_1:50520675-50520694 None:intergenic 50.0%
GGAGTGAACCTTCTTCTGAG+TGG + chr3_1:50520682-50520701 Msa0360790:CDS 50.0%
TCATCCAAAAGGGTCCCTCC+AGG + chr3_1:50518827-50518846 Msa0360790:CDS 55.0%
! AGAACCTGGAGGGACCCTTT+TGG - chr3_1:50518834-50518853 None:intergenic 55.0%
! TGGTGGACAATGAGGATGCG+TGG - chr3_1:50519651-50519670 None:intergenic 55.0%
GGCAGTGGCATGAGTATCAG+TGG - chr3_1:50519914-50519933 None:intergenic 55.0%
CATCGAGCATGGGTGACAGT+TGG + chr3_1:50520060-50520079 Msa0360790:CDS 55.0%
TGGAGCCTATTGTGGCAGGT+TGG + chr3_1:50520148-50520167 Msa0360790:CDS 55.0%
ACGGCCACTTATGATGGCCT+TGG - chr3_1:50520278-50520297 None:intergenic 55.0%
AAGGCCATCATAAGTGGCCG+TGG + chr3_1:50520277-50520296 Msa0360790:CDS 55.0%
GGGCTCATGGGACAAAGAGT+AGG + chr3_1:50520460-50520479 Msa0360790:CDS 55.0%
TCTTGCAGAGCTACCACGAG+CGG - chr3_1:50520492-50520511 None:intergenic 55.0%
! GTGGTAGCTCTGCAAGACAG+TGG + chr3_1:50520495-50520514 Msa0360790:CDS 55.0%
CTTGTGTCACGGTCGCAACA+TGG + chr3_1:50520522-50520541 Msa0360790:CDS 55.0%
TGTGTCACGGTCGCAACATG+GGG + chr3_1:50520524-50520543 Msa0360790:CDS 55.0%
TATTGTTATACGGCGGCCGG+TGG - chr3_1:50520554-50520573 None:intergenic 55.0%
TTGGGGTTAGGCCTAGGTCA+TGG + chr3_1:50520661-50520680 Msa0360790:CDS 55.0%
TCATCCAAAAGGGTCCCTCC+AGG + chr3_1:50518827-50518846 Msa0360790:CDS 55.0%
! AGAACCTGGAGGGACCCTTT+TGG - chr3_1:50518834-50518853 None:intergenic 55.0%
! TGGTGGACAATGAGGATGCG+TGG - chr3_1:50519651-50519670 None:intergenic 55.0%
GGCAGTGGCATGAGTATCAG+TGG - chr3_1:50519914-50519933 None:intergenic 55.0%
CATCGAGCATGGGTGACAGT+TGG + chr3_1:50520060-50520079 Msa0360790:CDS 55.0%
TGGAGCCTATTGTGGCAGGT+TGG + chr3_1:50520148-50520167 Msa0360790:CDS 55.0%
ACGGCCACTTATGATGGCCT+TGG - chr3_1:50520278-50520297 None:intergenic 55.0%
AAGGCCATCATAAGTGGCCG+TGG + chr3_1:50520277-50520296 Msa0360790:CDS 55.0%
GGGCTCATGGGACAAAGAGT+AGG + chr3_1:50520460-50520479 Msa0360790:CDS 55.0%
TCTTGCAGAGCTACCACGAG+CGG - chr3_1:50520492-50520511 None:intergenic 55.0%
! GTGGTAGCTCTGCAAGACAG+TGG + chr3_1:50520495-50520514 Msa0360790:CDS 55.0%
CTTGTGTCACGGTCGCAACA+TGG + chr3_1:50520522-50520541 Msa0360790:CDS 55.0%
TGTGTCACGGTCGCAACATG+GGG + chr3_1:50520524-50520543 Msa0360790:CDS 55.0%
TATTGTTATACGGCGGCCGG+TGG - chr3_1:50520554-50520573 None:intergenic 55.0%
TTGGGGTTAGGCCTAGGTCA+TGG + chr3_1:50520661-50520680 Msa0360790:CDS 55.0%
AGGGTCCCTCCAGGTTCTCT+TGG + chr3_1:50518836-50518855 Msa0360790:CDS 60.0%
TGGGTGGAGCCTATTGTGGC+AGG + chr3_1:50520144-50520163 Msa0360790:CDS 60.0%
TGGAGACGGGTCAACCCCAT+TGG + chr3_1:50520230-50520249 Msa0360790:CDS 60.0%
GACGGGTCAACCCCATTGGT+TGG + chr3_1:50520234-50520253 Msa0360790:CDS 60.0%
AGGGTCCCTCCAGGTTCTCT+TGG + chr3_1:50518836-50518855 Msa0360790:CDS 60.0%
TGGGTGGAGCCTATTGTGGC+AGG + chr3_1:50520144-50520163 Msa0360790:CDS 60.0%
TGGAGACGGGTCAACCCCAT+TGG + chr3_1:50520230-50520249 Msa0360790:CDS 60.0%
GACGGGTCAACCCCATTGGT+TGG + chr3_1:50520234-50520253 Msa0360790:CDS 60.0%
GGGCTTGGACTTCAGGGCAG+TGG - chr3_1:50519929-50519948 None:intergenic 65.0%
GAGTAGGCTTCCACCGCTCG+TGG + chr3_1:50520476-50520495 Msa0360790:CDS 65.0%
TGCAGAGCTACCACGAGCGG+TGG - chr3_1:50520489-50520508 None:intergenic 65.0%
CGCAACATGGGGCACACCAC+CGG + chr3_1:50520535-50520554 Msa0360790:CDS 65.0%
GGGCTTGGACTTCAGGGCAG+TGG - chr3_1:50519929-50519948 None:intergenic 65.0%
GAGTAGGCTTCCACCGCTCG+TGG + chr3_1:50520476-50520495 Msa0360790:CDS 65.0%
TGCAGAGCTACCACGAGCGG+TGG - chr3_1:50520489-50520508 None:intergenic 65.0%
CGCAACATGGGGCACACCAC+CGG + chr3_1:50520535-50520554 Msa0360790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 50518764 50520743 50518764 ID=Msa0360790;Name=Msa0360790
chr3_1 mRNA 50518764 50520743 50518764 ID=Msa0360790-mRNA-1;Parent=Msa0360790;Name=Msa0360790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|399
chr3_1 exon 50518764 50519037 50518764 ID=Msa0360790-mRNA-1:exon:8929;Parent=Msa0360790-mRNA-1
chr3_1 exon 50519818 50520743 50519818 ID=Msa0360790-mRNA-1:exon:8930;Parent=Msa0360790-mRNA-1
chr3_1 CDS 50518764 50519037 50518764 ID=Msa0360790-mRNA-1:cds;Parent=Msa0360790-mRNA-1
chr3_1 CDS 50519818 50520743 50519818 ID=Msa0360790-mRNA-1:cds;Parent=Msa0360790-mRNA-1
Gene Sequence

>Msa0360790

ATGAACCTTTTCATTGCTATTTTCCTCTTCATAATCCCAATTCTCCTTCTACTTAGAAGATCATCATCCAAAAGGGTCCCTCCAGGTTCTCTTGGAATACCTATCATTGGTCAAAGCCTTGGCTTTCTAAGAGCCTTACGTAACAACACAGCAGAAAAATGGCTACAAGAAAGAGTAAAGAAATATGGACAAGTTTCAAAGCTAAGTCTATTTGGAAAACCAACAGTTTTTATTCATGGACAAGGTGCAAATAAGTTTATATTCACCAATGATGTCCAACACAAGTGTCTTCCCAGCTTTCACCACCAAGTTTTCACAAAGAACTCTATCATCCACCGAATTCGCGTCAATTGCTCCGCCACCACTACCACTGATACTCATGCCACTGCCCTGAAGTCCAAGCCCAATGCTAATCAATTGATCATTGAGCCGAAACTTGCACGACCGCCAATAAAAGTGGTAACTGATGCTAACCGTCCAATGGACAATGACCCTAGTTTGGAATCAACATGGTCTCATCGAGCATGGGTGACAGTTGGATGCACAACATTGCTCATTTCGTTGGGAGAGTCCATTAAAGGTTCGATGGATATGAATATGTGGGTGGAGCCTATTGTGGCAGGTTGGATTGGTTACATCTTAGCTGATCTTGGGTCCGGAGTTTACCATTGGGCCATTGATAATTATGGAGACGGGTCAACCCCATTGGTTGGTGCCCAAATTGAAGCTTTCCAAGGCCATCATAAGTGGCCGTGGACTATTACTAAGCGTCAATTTGCCAACAATTTGCACTCACTCGCACGTATGGTAACTTTTGTAGTGCTTCCTATCAATCTTCTTTTCCATGACCCTATTGTTCAAAGTTTTGTTGGGGTGTGTGCCGGTTGTATTATGTTTAGCCAACAATTTCATGCATGGGCTCATGGGACAAAGAGTAGGCTTCCACCGCTCGTGGTAGCTCTGCAAGACAGTGGAGTGCTTGTGTCACGGTCGCAACATGGGGCACACCACCGGCCGCCGTATAACAATAATTATTGCATAGTAAGTGGAGTGTGGAATGAGTTGTTGGATAAAACTAAAGCTTTTGAAGCTATGGAAATGATATTGTATTTTAAACTTGGGGTTAGGCCTAGGTCATGGAGTGAACCTTCTTCTGAGTGGATAGAGGAGATTGAAATTGCTTCTCAAAGCCAAACCTAA

Protein sequence

>Msa0360790

MNLFIAIFLFIIPILLLLRRSSSKRVPPGSLGIPIIGQSLGFLRALRNNTAEKWLQERVKKYGQVSKLSLFGKPTVFIHGQGANKFIFTNDVQHKCLPSFHHQVFTKNSIIHRIRVNCSATTTTDTHATALKSKPNANQLIIEPKLARPPIKVVTDANRPMDNDPSLESTWSHRAWVTVGCTTLLISLGESIKGSMDMNMWVEPIVAGWIGYILADLGSGVYHWAIDNYGDGSTPLVGAQIEAFQGHHKWPWTITKRQFANNLHSLARMVTFVVLPINLLFHDPIVQSFVGVCAGCIMFSQQFHAWAHGTKSRLPPLVVALQDSGVLVSRSQHGAHHRPPYNNNYCIVSGVWNELLDKTKAFEAMEMILYFKLGVRPRSWSEPSSEWIEEIEIASQSQT*