AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1043510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043510 MtrunA17_Chr6g0475961 94.792 96 5 0 4 99 60 155 1.21e-60 183
Msa1043510 MtrunA17_Chr6g0475961 100.000 76 0 0 24 99 4 79 1.02e-49 155
Msa1043510 MtrunA17_Chr6g0475961 91.228 57 5 0 4 60 136 192 5.90e-29 103
Msa1043510 MtrunA17_Chr7g0274921 93.814 97 6 0 4 100 135 231 1.24e-60 184
Msa1043510 MtrunA17_Chr7g0274921 94.792 96 5 0 4 99 59 154 5.90e-60 182
Msa1043510 MtrunA17_Chr7g0274921 100.000 76 0 0 24 99 3 78 3.86e-49 155
Msa1043510 MtrunA17_Chr1g0181441 94.792 96 5 0 4 99 57 152 1.01e-59 182
Msa1043510 MtrunA17_Chr1g0181441 94.792 96 5 0 4 99 133 228 1.01e-59 182
Msa1043510 MtrunA17_Chr1g0181441 100.000 76 0 0 24 99 1 76 6.45e-49 155
Msa1043510 MtrunA17_Chr4g0041751 93.750 96 6 0 4 99 57 152 3.53e-59 181
Msa1043510 MtrunA17_Chr4g0041751 98.684 76 1 0 24 99 1 76 2.68e-48 153
Msa1043510 MtrunA17_Chr4g0041751 72.043 93 26 0 7 99 136 228 6.95e-40 132
Msa1043510 MtrunA17_Chr4g0046801 93.814 97 6 0 4 100 364 460 4.52e-58 184
Msa1043510 MtrunA17_Chr4g0046801 94.792 96 5 0 4 99 60 155 2.10e-57 182
Msa1043510 MtrunA17_Chr4g0046801 94.792 96 5 0 4 99 136 231 2.10e-57 182
Msa1043510 MtrunA17_Chr4g0046801 94.792 96 5 0 4 99 212 307 2.10e-57 182
Msa1043510 MtrunA17_Chr4g0046801 94.792 96 5 0 4 99 288 383 2.10e-57 182
Msa1043510 MtrunA17_Chr4g0046801 98.701 77 1 0 23 99 3 79 6.65e-47 155
Msa1043510 MtrunA17_Chr8g0377821 94.792 96 5 0 4 99 65 160 5.28e-58 182
Msa1043510 MtrunA17_Chr8g0377821 94.792 96 5 0 4 99 141 236 5.28e-58 182
Msa1043510 MtrunA17_Chr8g0377821 94.792 96 5 0 4 99 217 312 5.28e-58 182
Msa1043510 MtrunA17_Chr8g0377821 94.792 96 5 0 4 99 293 388 5.28e-58 182
Msa1043510 MtrunA17_Chr8g0377821 100.000 76 0 0 24 99 9 84 2.34e-47 155
Msa1043510 MtrunA17_Chr4g0041641 93.814 97 6 0 4 100 365 461 5.36e-58 184
Msa1043510 MtrunA17_Chr4g0041641 94.792 96 5 0 4 99 61 156 2.50e-57 182
Msa1043510 MtrunA17_Chr4g0041641 94.792 96 5 0 4 99 137 232 2.50e-57 182
Msa1043510 MtrunA17_Chr4g0041641 94.792 96 5 0 4 99 213 308 2.50e-57 182
Msa1043510 MtrunA17_Chr4g0041641 94.792 96 5 0 4 99 289 384 2.50e-57 182
Msa1043510 MtrunA17_Chr4g0041641 100.000 76 0 0 24 99 5 80 8.81e-47 155
Msa1043510 MtrunA17_Chr4g0041701 94.845 97 5 0 4 100 437 533 6.54e-58 186
Msa1043510 MtrunA17_Chr4g0041701 94.792 96 5 0 4 99 57 152 1.10e-56 182
Msa1043510 MtrunA17_Chr4g0041701 94.792 96 5 0 4 99 133 228 1.10e-56 182
Msa1043510 MtrunA17_Chr4g0041701 94.792 96 5 0 4 99 209 304 1.10e-56 182
Msa1043510 MtrunA17_Chr4g0041701 94.792 96 5 0 4 99 285 380 1.10e-56 182
Msa1043510 MtrunA17_Chr4g0041701 94.792 96 5 0 4 99 361 456 1.10e-56 182
Msa1043510 MtrunA17_Chr4g0041701 100.000 76 0 0 24 99 1 76 2.86e-46 155
Msa1043510 MtrunA17_Chr4g0048591 93.814 97 6 0 4 100 440 536 2.19e-57 184
Msa1043510 MtrunA17_Chr4g0048591 94.792 96 5 0 4 99 60 155 1.01e-56 182
Msa1043510 MtrunA17_Chr4g0048591 94.792 96 5 0 4 99 136 231 1.01e-56 182
Msa1043510 MtrunA17_Chr4g0048591 94.792 96 5 0 4 99 212 307 1.01e-56 182
Msa1043510 MtrunA17_Chr4g0048591 96.774 93 3 0 7 99 367 459 2.43e-56 182
Msa1043510 MtrunA17_Chr4g0048591 92.708 96 7 0 4 99 288 383 5.18e-55 178
Msa1043510 MtrunA17_Chr4g0048591 98.701 77 1 0 23 99 3 79 2.32e-46 155
Msa1043510 MtrunA17_Chr8g0342711 93.814 97 6 0 4 100 440 536 2.38e-57 184
Msa1043510 MtrunA17_Chr8g0342711 94.792 96 5 0 4 99 60 155 1.09e-56 182
Msa1043510 MtrunA17_Chr8g0342711 94.792 96 5 0 4 99 136 231 1.09e-56 182
Msa1043510 MtrunA17_Chr8g0342711 94.792 96 5 0 4 99 212 307 1.09e-56 182
Msa1043510 MtrunA17_Chr8g0342711 94.792 96 5 0 4 99 288 383 1.09e-56 182
Msa1043510 MtrunA17_Chr8g0342711 94.792 96 5 0 4 99 364 459 1.09e-56 182
Msa1043510 MtrunA17_Chr8g0342711 100.000 76 0 0 24 99 4 79 2.80e-46 155
Msa1043510 MtrunA17_Chr4g0046831 93.814 97 6 0 4 100 500 596 6.08e-57 184
Msa1043510 MtrunA17_Chr4g0046831 94.792 96 5 0 4 99 60 155 2.69e-56 182
Msa1043510 MtrunA17_Chr4g0046831 94.792 96 5 0 4 99 136 231 2.69e-56 182
Msa1043510 MtrunA17_Chr4g0046831 94.792 96 5 0 4 99 212 307 2.69e-56 182
Msa1043510 MtrunA17_Chr4g0046831 94.792 96 5 0 4 99 348 443 2.69e-56 182
Msa1043510 MtrunA17_Chr4g0046831 94.792 96 5 0 4 99 424 519 2.69e-56 182
Msa1043510 MtrunA17_Chr4g0046831 98.684 76 1 0 24 99 4 79 8.88e-45 152
Msa1043510 MtrunA17_Chr4g0046831 78.125 96 5 1 4 99 288 367 5.72e-40 139
Msa1043510 MtrunA17_Chr6g0475951 98.701 77 1 0 24 100 1 77 1.34e-51 156
Msa1043510 MtrunA17_Chr7g0266661 100.000 76 0 0 24 99 1 76 4.21e-51 157
Msa1043510 MtrunA17_Chr1g0178381 100.000 76 0 0 24 99 1 76 4.21e-51 157
Msa1043510 MtrunA17_Chr3g0127481 100.000 76 0 0 24 99 1 76 4.21e-51 157
Msa1043510 MtrunA17_Chr8g0380181 100.000 76 0 0 24 99 1 76 1.18e-50 156
Msa1043510 MtrunA17_Chr5g0413361 100.000 76 0 0 24 99 1 76 1.20e-50 156
Msa1043510 MtrunA17_Chr4g0037241 100.000 76 0 0 24 99 1 76 5.06e-50 155
Msa1043510 MtrunA17_Chr4g0037241 63.542 96 35 0 4 99 57 152 1.14e-37 124
Msa1043510 MtrunA17_Chr5g0444101 100.000 76 0 0 24 99 1 76 5.06e-50 155
Msa1043510 MtrunA17_Chr5g0444101 63.542 96 35 0 4 99 57 152 1.14e-37 124
Msa1043510 MtrunA17_Chr8g0374171 91.667 96 8 0 4 99 54 149 2.11e-49 154
Msa1043510 MtrunA17_Chr8g0374171 94.118 34 2 0 66 99 40 73 5.92e-16 68.9
Msa1043510 MtrunA17_Chr8g0374171 81.081 37 7 0 4 40 130 166 9.34e-13 60.5
Msa1043510 MtrunA17_Chr1g0169371 71.053 76 22 0 24 99 215 290 5.89e-30 107
Msa1043510 MtrunA17_Chr5g0433721 68.831 77 23 1 24 99 194 270 8.80e-29 104
Msa1043510 MtrunA17_Chr5g0433631 69.863 73 22 0 24 96 266 338 8.16e-28 103
Msa1043510 MtrunA17_Chr5g0428191 69.333 75 23 0 24 98 241 315 9.67e-27 100
Msa1043510 MtrunA17_Chr5g0424981 60.000 75 30 0 24 98 2 76 4.09e-26 92.4
Msa1043510 MtrunA17_Chr8g0374161 100.000 44 0 0 24 67 9 52 1.06e-25 90.5
Msa1043510 MtrunA17_Chr5g0433681 58.974 78 31 1 24 100 1 78 1.67e-24 88.2
Msa1043510 MtrunA17_Chr5g0433521 61.333 75 29 0 24 98 240 314 4.46e-24 92.8
Msa1043510 MtrunA17_Chr5g0433661 65.333 75 26 0 24 98 278 352 6.29e-24 93.2
Msa1043510 MtrunA17_Chr5g0433411 64.384 73 26 0 24 96 267 339 6.29e-24 92.8
Msa1043510 MtrunA17_Chr2g0298951 61.333 75 29 0 24 98 236 310 1.88e-23 91.3
Msa1043510 MtrunA17_Chr2g0298941 60.000 75 30 0 24 98 177 251 7.68e-23 88.6
Msa1043510 MtrunA17_Chr7g0259431 54.118 85 39 0 14 98 213 297 1.27e-22 89.0
Msa1043510 MtrunA17_Chr1g0169401 60.000 70 28 0 30 99 2 71 2.63e-22 82.4
Msa1043510 MtrunA17_Chr4g0003111 53.333 75 35 0 24 98 4 78 8.82e-21 79.0
Msa1043510 MtrunA17_Chr5g0433531 57.333 75 31 1 24 97 244 318 2.69e-20 82.8
Msa1043510 MtrunA17_Chr5g0433701 58.824 68 27 1 24 90 1 68 1.23e-19 76.3
Msa1043510 MtrunA17_Chr7g0223111 60.526 76 29 1 24 98 267 342 1.67e-19 80.9
Msa1043510 MtrunA17_Chr5g0424971 53.333 75 35 0 24 98 252 326 2.91e-18 77.4
Msa1043510 MtrunA17_Chr5g0433391 48.684 76 38 1 24 98 8 83 2.71e-16 67.4
Msa1043510 MtrunA17_Chr5g0433711 56.452 62 27 0 36 97 2 63 9.23e-16 65.9
Msa1043510 MtrunA17_Chr5g0433381 51.316 76 35 2 23 96 8 83 1.07e-15 66.2
Msa1043510 MtrunA17_Chr4g0041621 78.788 33 7 0 67 99 11 43 8.48e-12 55.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043510 AT4G05320.7 93.814 97 6 0 4 100 57 153 1.78e-61 184
Msa1043510 AT4G05320.7 100.000 76 0 0 24 99 1 76 6.20e-50 155
Msa1043510 AT4G05050.4 93.814 97 6 0 4 100 57 153 1.78e-61 184
Msa1043510 AT4G05050.4 100.000 76 0 0 24 99 1 76 6.20e-50 155
Msa1043510 AT4G02890.2 93.814 97 6 0 4 100 133 229 1.83e-60 184
Msa1043510 AT4G02890.2 94.792 96 5 0 4 99 57 152 8.73e-60 182
Msa1043510 AT4G02890.2 100.000 76 0 0 24 99 1 76 5.73e-49 155
Msa1043510 AT4G02890.1 93.814 97 6 0 4 100 133 229 1.83e-60 184
Msa1043510 AT4G02890.1 94.792 96 5 0 4 99 57 152 8.73e-60 182
Msa1043510 AT4G02890.1 100.000 76 0 0 24 99 1 76 5.73e-49 155
Msa1043510 AT4G05050.2 93.814 97 6 0 4 100 133 229 1.83e-60 184
Msa1043510 AT4G05050.2 94.792 96 5 0 4 99 57 152 8.73e-60 182
Msa1043510 AT4G05050.2 100.000 76 0 0 24 99 1 76 5.73e-49 155
Msa1043510 AT4G05050.1 93.814 97 6 0 4 100 133 229 1.83e-60 184
Msa1043510 AT4G05050.1 94.792 96 5 0 4 99 57 152 8.73e-60 182
Msa1043510 AT4G05050.1 100.000 76 0 0 24 99 1 76 5.73e-49 155
Msa1043510 AT4G05050.3 93.814 97 6 0 4 100 133 229 1.83e-60 184
Msa1043510 AT4G05050.3 94.792 96 5 0 4 99 57 152 8.73e-60 182
Msa1043510 AT4G05050.3 100.000 76 0 0 24 99 1 76 5.73e-49 155
Msa1043510 AT4G05320.5 93.814 97 6 0 4 100 209 305 1.84e-59 184
Msa1043510 AT4G05320.5 94.792 96 5 0 4 99 57 152 8.71e-59 182
Msa1043510 AT4G05320.5 94.792 96 5 0 4 99 133 228 8.71e-59 182
Msa1043510 AT4G05320.5 100.000 76 0 0 24 99 1 76 4.85e-48 155
Msa1043510 AT4G05320.8 93.814 97 6 0 4 100 209 305 1.84e-59 184
Msa1043510 AT4G05320.8 94.792 96 5 0 4 99 57 152 8.71e-59 182
Msa1043510 AT4G05320.8 94.792 96 5 0 4 99 133 228 8.71e-59 182
Msa1043510 AT4G05320.8 100.000 76 0 0 24 99 1 76 4.85e-48 155
Msa1043510 AT4G02890.3 93.814 97 6 0 4 100 209 305 1.84e-59 184
Msa1043510 AT4G02890.3 94.792 96 5 0 4 99 57 152 8.71e-59 182
Msa1043510 AT4G02890.3 94.792 96 5 0 4 99 133 228 8.71e-59 182
Msa1043510 AT4G02890.3 100.000 76 0 0 24 99 1 76 4.85e-48 155
Msa1043510 AT4G02890.4 93.814 97 6 0 4 100 209 305 1.84e-59 184
Msa1043510 AT4G02890.4 94.792 96 5 0 4 99 57 152 8.71e-59 182
Msa1043510 AT4G02890.4 94.792 96 5 0 4 99 133 228 8.71e-59 182
Msa1043510 AT4G02890.4 100.000 76 0 0 24 99 1 76 4.85e-48 155
Msa1043510 AT5G03240.3 94.792 96 5 0 4 99 57 152 7.61e-59 182
Msa1043510 AT5G03240.3 94.792 96 5 0 4 99 133 228 7.61e-59 182
Msa1043510 AT5G03240.3 94.792 96 5 0 4 99 209 304 7.61e-59 182
Msa1043510 AT5G03240.3 100.000 76 0 0 24 99 1 76 4.23e-48 155
Msa1043510 AT5G03240.2 94.792 96 5 0 4 99 57 152 7.61e-59 182
Msa1043510 AT5G03240.2 94.792 96 5 0 4 99 133 228 7.61e-59 182
Msa1043510 AT5G03240.2 94.792 96 5 0 4 99 209 304 7.61e-59 182
Msa1043510 AT5G03240.2 100.000 76 0 0 24 99 1 76 4.23e-48 155
Msa1043510 AT5G03240.1 94.792 96 5 0 4 99 57 152 7.61e-59 182
Msa1043510 AT5G03240.1 94.792 96 5 0 4 99 133 228 7.61e-59 182
Msa1043510 AT5G03240.1 94.792 96 5 0 4 99 209 304 7.61e-59 182
Msa1043510 AT5G03240.1 100.000 76 0 0 24 99 1 76 4.23e-48 155
Msa1043510 AT5G20620.2 94.792 96 5 0 4 99 57 152 7.61e-59 182
Msa1043510 AT5G20620.2 94.792 96 5 0 4 99 133 228 7.61e-59 182
Msa1043510 AT5G20620.2 94.792 96 5 0 4 99 209 304 7.61e-59 182
Msa1043510 AT5G20620.2 100.000 76 0 0 24 99 1 76 4.23e-48 155
Msa1043510 AT4G05320.1 93.814 97 6 0 4 100 285 381 1.40e-58 184
Msa1043510 AT4G05320.1 94.792 96 5 0 4 99 57 152 6.62e-58 182
Msa1043510 AT4G05320.1 94.792 96 5 0 4 99 133 228 6.62e-58 182
Msa1043510 AT4G05320.1 94.792 96 5 0 4 99 209 304 6.62e-58 182
Msa1043510 AT4G05320.1 100.000 76 0 0 24 99 1 76 2.94e-47 155
Msa1043510 AT4G05320.6 93.814 97 6 0 4 100 285 381 1.40e-58 184
Msa1043510 AT4G05320.6 94.792 96 5 0 4 99 57 152 6.62e-58 182
Msa1043510 AT4G05320.6 94.792 96 5 0 4 99 133 228 6.62e-58 182
Msa1043510 AT4G05320.6 94.792 96 5 0 4 99 209 304 6.62e-58 182
Msa1043510 AT4G05320.6 100.000 76 0 0 24 99 1 76 2.94e-47 155
Msa1043510 AT4G05320.3 93.814 97 6 0 4 100 285 381 1.40e-58 184
Msa1043510 AT4G05320.3 94.792 96 5 0 4 99 57 152 6.62e-58 182
Msa1043510 AT4G05320.3 94.792 96 5 0 4 99 133 228 6.62e-58 182
Msa1043510 AT4G05320.3 94.792 96 5 0 4 99 209 304 6.62e-58 182
Msa1043510 AT4G05320.3 100.000 76 0 0 24 99 1 76 2.94e-47 155
Msa1043510 AT5G20620.1 94.792 96 5 0 4 99 57 152 6.15e-58 182
Msa1043510 AT5G20620.1 94.792 96 5 0 4 99 133 228 6.15e-58 182
Msa1043510 AT5G20620.1 94.792 96 5 0 4 99 209 304 6.15e-58 182
Msa1043510 AT5G20620.1 94.792 96 5 0 4 99 285 380 6.15e-58 182
Msa1043510 AT5G20620.1 100.000 76 0 0 24 99 1 76 2.85e-47 155
Msa1043510 AT4G05320.2 93.814 97 6 0 4 100 361 457 7.57e-58 184
Msa1043510 AT4G05320.2 94.792 96 5 0 4 99 57 152 3.52e-57 182
Msa1043510 AT4G05320.2 94.792 96 5 0 4 99 133 228 3.52e-57 182
Msa1043510 AT4G05320.2 94.792 96 5 0 4 99 209 304 3.52e-57 182
Msa1043510 AT4G05320.2 94.792 96 5 0 4 99 285 380 3.52e-57 182
Msa1043510 AT4G05320.2 100.000 76 0 0 24 99 1 76 1.23e-46 155
Msa1043510 AT4G05320.4 93.814 97 6 0 4 100 361 457 7.57e-58 184
Msa1043510 AT4G05320.4 94.792 96 5 0 4 99 57 152 3.52e-57 182
Msa1043510 AT4G05320.4 94.792 96 5 0 4 99 133 228 3.52e-57 182
Msa1043510 AT4G05320.4 94.792 96 5 0 4 99 209 304 3.52e-57 182
Msa1043510 AT4G05320.4 94.792 96 5 0 4 99 285 380 3.52e-57 182
Msa1043510 AT4G05320.4 100.000 76 0 0 24 99 1 76 1.23e-46 155
Msa1043510 AT1G55060.1 89.583 96 10 0 4 99 57 152 2.16e-57 176
Msa1043510 AT1G55060.1 92.708 96 7 0 4 99 133 228 3.20e-57 176
Msa1043510 AT1G55060.1 86.842 76 10 0 24 99 1 76 3.13e-42 138
Msa1043510 AT1G65350.1 95.699 93 4 0 7 99 135 227 3.12e-57 179
Msa1043510 AT1G65350.1 93.750 96 5 1 4 99 57 151 1.27e-55 175
Msa1043510 AT1G65350.1 79.091 110 9 1 4 99 208 317 1.42e-49 159
Msa1043510 AT1G65350.1 100.000 76 0 0 24 99 1 76 5.35e-48 155
Msa1043510 AT5G37640.1 90.625 96 9 0 4 99 59 154 1.83e-56 177
Msa1043510 AT5G37640.1 89.583 96 10 0 4 99 135 230 2.76e-54 171
Msa1043510 AT5G37640.1 87.629 97 11 1 4 99 211 307 1.99e-50 161
Msa1043510 AT5G37640.1 78.947 76 16 0 24 99 3 78 5.09e-34 119
Msa1043510 AT2G36170.1 100.000 76 0 0 24 99 1 76 5.51e-51 157
Msa1043510 AT3G52590.1 100.000 76 0 0 24 99 1 76 5.51e-51 157
Msa1043510 AT3G09790.2 89.583 96 10 0 4 99 59 154 1.46e-50 168
Msa1043510 AT3G09790.2 85.526 76 11 0 24 99 3 78 8.13e-37 130
Msa1043510 AT3G09790.2 75.581 86 21 0 12 97 540 625 1.75e-35 127
Msa1043510 AT3G09790.2 67.647 102 26 2 4 98 135 236 2.36e-35 127
Msa1043510 AT3G09790.2 68.750 96 26 1 4 99 377 468 1.05e-33 122
Msa1043510 AT3G09790.2 70.968 93 25 1 4 94 299 391 2.61e-33 121
Msa1043510 AT3G09790.2 67.327 101 28 1 4 99 218 318 5.88e-33 120
Msa1043510 AT3G09790.2 64.000 100 29 1 7 99 452 551 2.07e-31 115
Msa1043510 AT3G09790.1 89.583 96 10 0 4 99 59 154 1.46e-50 168
Msa1043510 AT3G09790.1 85.526 76 11 0 24 99 3 78 8.13e-37 130
Msa1043510 AT3G09790.1 75.581 86 21 0 12 97 540 625 1.75e-35 127
Msa1043510 AT3G09790.1 67.647 102 26 2 4 98 135 236 2.36e-35 127
Msa1043510 AT3G09790.1 68.750 96 26 1 4 99 377 468 1.05e-33 122
Msa1043510 AT3G09790.1 70.968 93 25 1 4 94 299 391 2.61e-33 121
Msa1043510 AT3G09790.1 67.327 101 28 1 4 99 218 318 5.88e-33 120
Msa1043510 AT3G09790.1 64.000 100 29 1 7 99 452 551 2.07e-31 115
Msa1043510 AT2G47110.2 100.000 76 0 0 24 99 1 76 1.62e-50 157
Msa1043510 AT2G47110.1 100.000 76 0 0 24 99 1 76 1.62e-50 157
Msa1043510 AT1G23410.1 100.000 76 0 0 24 99 1 76 1.73e-50 156
Msa1043510 AT3G62250.1 100.000 76 0 0 24 99 1 76 1.89e-50 156
Msa1043510 AT2G35635.1 100.000 76 0 0 24 99 1 76 6.32e-50 155
Msa1043510 AT2G35635.1 63.542 96 35 0 4 99 57 152 5.09e-37 122
Msa1043510 AT1G31340.1 100.000 76 0 0 24 99 1 76 9.65e-50 154
Msa1043510 AT1G31340.1 63.918 97 35 0 4 100 57 153 8.99e-39 127
Msa1043510 AT1G53930.1 75.342 73 18 0 24 96 86 158 8.62e-34 114
Msa1043510 AT1G53950.1 52.525 99 41 1 6 98 45 143 4.37e-26 94.7
Msa1043510 AT1G11980.1 55.263 76 34 0 24 99 1 76 6.23e-25 89.7
Msa1043510 AT1G53945.1 45.977 87 45 1 6 90 26 112 3.31e-16 68.6
Msa1043510 AT4G12570.1 38.667 75 45 1 24 97 95 169 1.52e-12 62.4
Msa1043510 AT5G42220.2 38.889 72 44 0 24 95 24 95 1.91e-11 59.3
Msa1043510 AT5G42220.1 38.889 72 44 0 24 95 24 95 1.91e-11 59.3

Find 22 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTGTGAAGACACTTAC+TGG 0.340523 7_2:+1668509 Msa1043510:CDS
AAAATAAGCCTTTGCTGGTC+TGG 0.369394 7_2:-1668614 None:intergenic
TACTGGGAAGACTATTACCT+TGG 0.388796 7_2:+1668526 Msa1043510:CDS
GTTGGAGGATGGTCGTACTT+TGG 0.490504 7_2:+1668649 Msa1043510:CDS
TGGGAAGACTATTACCTTGG+AGG 0.507917 7_2:+1668529 Msa1043510:CDS
TAACGTGAAAGCGAAGATAC+AGG 0.523093 7_2:+1668574 Msa1043510:CDS
GCTGGCAAGCAGTTGGAGGA+TGG 0.535241 7_2:+1668638 Msa1043510:CDS
GAAAGCGAAGATACAGGATA+AGG 0.552277 7_2:+1668580 Msa1043510:CDS
ATAAGCCTTTGCTGGTCTGG+TGG 0.552962 7_2:-1668611 None:intergenic
GGAGGCGAAGAACAAGATGC+AGG 0.555285 7_2:-1668700 None:intergenic
AGCGAAGATACAGGATAAGG+AGG 0.570060 7_2:+1668583 Msa1043510:CDS
GAAGACTATTACCTTGGAGG+TGG 0.573223 7_2:+1668532 Msa1043510:CDS
ATCAGAGCTTTCCACCTCCA+AGG 0.576914 7_2:-1668543 None:intergenic
TATTTGTGAAGACACTTACT+GGG 0.579572 7_2:+1668510 Msa1043510:CDS
CTTGTTCTTCGCCTCCGTGG+TGG 0.614501 7_2:+1668707 Msa1043510:CDS
GTATTCCACCAGACCAGCAA+AGG 0.618403 7_2:+1668606 Msa1043510:CDS
GCGAAGATACAGGATAAGGA+GGG 0.623735 7_2:+1668584 Msa1043510:CDS
CATCTTGTTCTTCGCCTCCG+TGG 0.627545 7_2:+1668704 Msa1043510:CDS
TTCTGCTACGATTGATAACG+TGG 0.645659 7_2:-1668444 None:intergenic
GAGGCGAAGAACAAGATGCA+GGG 0.658046 7_2:-1668699 None:intergenic
GACACACTTAGTAGCCACCA+CGG 0.697470 7_2:-1668721 None:intergenic
ACACTTAGTAGCCACCACGG+AGG 0.802224 7_2:-1668718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ATATTTGTGAAGACACTTAC+TGG + chr7_2:1668509-1668528 Msa1043510:CDS 30.0%
TATTTGTGAAGACACTTACT+GGG + chr7_2:1668510-1668529 Msa1043510:CDS 30.0%
!!! CTACTCTGCATTTAGTTTTG+AGG + chr7_2:1668468-1668487 Msa1043510:CDS 35.0%
!! TTCTGCTACGATTGATAACG+TGG - chr7_2:1668447-1668466 None:intergenic 40.0%
!!! CATTTAGTTTTGAGGCTTCG+TGG + chr7_2:1668476-1668495 Msa1043510:CDS 40.0%
TACTGGGAAGACTATTACCT+TGG + chr7_2:1668526-1668545 Msa1043510:CDS 40.0%
TAACGTGAAAGCGAAGATAC+AGG + chr7_2:1668574-1668593 Msa1043510:CDS 40.0%
GAAAGCGAAGATACAGGATA+AGG + chr7_2:1668580-1668599 Msa1043510:CDS 40.0%
AAAATAAGCCTTTGCTGGTC+TGG - chr7_2:1668617-1668636 None:intergenic 40.0%
CAGCAAAAATAAGCCTTTGC+TGG - chr7_2:1668622-1668641 None:intergenic 40.0%
!!! CAGCAAAGGCTTATTTTTGC+TGG + chr7_2:1668620-1668639 Msa1043510:CDS 40.0%
!! TATTTTTGCTGGCAAGCAGT+TGG + chr7_2:1668631-1668650 Msa1043510:CDS 40.0%
!!! TTAGTTTTGAGGCTTCGTGG+TGG + chr7_2:1668479-1668498 Msa1043510:CDS 45.0%
TGGGAAGACTATTACCTTGG+AGG + chr7_2:1668529-1668548 Msa1043510:CDS 45.0%
GAAGACTATTACCTTGGAGG+TGG + chr7_2:1668532-1668551 Msa1043510:CDS 45.0%
AGCGAAGATACAGGATAAGG+AGG + chr7_2:1668583-1668602 Msa1043510:CDS 45.0%
GCGAAGATACAGGATAAGGA+GGG + chr7_2:1668584-1668603 Msa1043510:CDS 45.0%
ATCAGAGCTTTCCACCTCCA+AGG - chr7_2:1668546-1668565 None:intergenic 50.0%
GTATTCCACCAGACCAGCAA+AGG + chr7_2:1668606-1668625 Msa1043510:CDS 50.0%
! ATAAGCCTTTGCTGGTCTGG+TGG - chr7_2:1668614-1668633 None:intergenic 50.0%
! TTTTGCTGGCAAGCAGTTGG+AGG + chr7_2:1668634-1668653 Msa1043510:CDS 50.0%
GTTGGAGGATGGTCGTACTT+TGG + chr7_2:1668649-1668668 Msa1043510:CDS 50.0%
GAGGCGAAGAACAAGATGCA+GGG - chr7_2:1668702-1668721 None:intergenic 50.0%
GGAGGCGAAGAACAAGATGC+AGG - chr7_2:1668703-1668722 None:intergenic 55.0%
CATCTTGTTCTTCGCCTCCG+TGG + chr7_2:1668704-1668723 Msa1043510:CDS 55.0%
GCTGGCAAGCAGTTGGAGGA+TGG + chr7_2:1668638-1668657 Msa1043510:CDS 60.0%
CTTGTTCTTCGCCTCCGTGG+TGG + chr7_2:1668707-1668726 Msa1043510:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 1668434 1668736 1668434 ID=Msa1043510;Name=Msa1043510
chr7_2 mRNA 1668434 1668736 1668434 ID=Msa1043510-mRNA-1;Parent=Msa1043510;Name=Msa1043510-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|100
chr7_2 exon 1668434 1668736 1668434 ID=Msa1043510-mRNA-1:exon:267;Parent=Msa1043510-mRNA-1
chr7_2 CDS 1668434 1668736 1668434 ID=Msa1043510-mRNA-1:cds;Parent=Msa1043510-mRNA-1
Gene Sequence

>Msa1043510

ATGTCAAACGCCACGTTATCAATCGTAGCAGAATCTACTCTGCATTTAGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACGATTGATAACGTGAAAGCGAAGATACAGGATAAGGAGGGTATTCCACCAGACCAGCAAAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAATATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGCCTCCGTGGTGGCTACTAA

Protein sequence

>Msa1043510

MSNATLSIVAESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY*