AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1026610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026610 MtrunA17_Chr7g0238741 94.943 613 29 1 1 613 1 611 0.0 1183
Msa1026610 MtrunA17_Chr3g0111941 38.578 661 318 18 1 611 1 623 4.01e-106 334
Msa1026610 MtrunA17_Chr5g0435351 37.099 655 317 19 1 611 1 604 2.81e-89 289
Msa1026610 MtrunA17_Chr2g0328331 43.459 451 198 11 196 602 270 707 9.50e-89 290
Msa1026610 MtrunA17_Chr2g0328331 42.308 104 50 5 1 99 1 99 8.82e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026610 AT1G07540.1 51.955 358 137 8 257 610 291 617 7.65e-102 322
Msa1026610 AT3G12560.1 38.199 644 316 25 1 609 1 597 5.40e-98 312
Msa1026610 AT3G12560.2 38.199 644 316 25 1 609 1 597 5.40e-98 312
Msa1026610 AT5G13820.2 36.420 648 352 16 1 611 1 625 5.87e-94 302
Msa1026610 AT5G13820.1 36.420 648 352 16 1 611 1 625 5.87e-94 302
Msa1026610 AT3G46590.3 45.519 424 151 14 210 612 173 537 2.86e-90 290
Msa1026610 AT3G46590.5 49.584 361 118 11 263 612 195 502 3.21e-90 288
Msa1026610 AT3G46590.2 49.584 361 118 11 263 612 236 543 5.70e-90 289
Msa1026610 AT3G46590.1 49.584 361 118 11 263 612 235 542 6.04e-90 289
Msa1026610 AT5G59430.3 43.301 418 176 11 206 608 184 555 1.07e-80 265
Msa1026610 AT5G59430.2 42.961 412 174 11 206 602 184 549 4.86e-77 256
Msa1026610 AT5G59430.1 42.961 412 174 11 206 602 184 549 4.86e-77 256
Msa1026610 AT5G59430.5 42.961 412 174 11 206 602 184 549 4.86e-77 256
Msa1026610 AT5G59430.4 42.961 412 174 11 206 602 183 548 6.63e-77 255
Msa1026610 AT3G53790.1 75.000 104 25 1 500 602 293 396 6.08e-45 165
Msa1026610 AT3G53790.1 41.139 158 43 3 259 412 146 257 2.53e-24 106
Msa1026610 AT3G46590.4 43.299 194 61 5 263 448 236 388 1.87e-32 129

Find 163 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACAAGCATTTGATATTT+TGG 0.097321 7_1:+58798457 Msa1026610:CDS
TCCTTAACCTTTATTGTATC+TGG 0.203390 7_1:-58799336 None:intergenic
GAACCAATAGTTGCAGTTTC+AGG 0.221968 7_1:-58800268 None:intergenic
CCAAACCTTTACCTGGTTTA+GGG 0.257043 7_1:-58802744 None:intergenic
GTTCACGACCAAAACTTTCT+AGG 0.280251 7_1:+58801011 Msa1026610:CDS
GAATCAAGTAGGATCGTTTA+AGG 0.284561 7_1:+58798595 Msa1026610:CDS
AGCTAATGCATCCATGTTAA+TGG 0.287279 7_1:-58801575 None:intergenic
GTTACATTTACCATACCTTA+TGG 0.298261 7_1:+58802800 Msa1026610:three_prime_UTR
AATTACTGCAAATGATAGTT+TGG 0.298412 7_1:-58799894 None:intergenic
TTCGCAGAAGCAGCATTATC+AGG 0.312880 7_1:-58798524 None:intergenic
CCCAAACCTTTACCTGGTTT+AGG 0.312939 7_1:-58802745 None:intergenic
ACCTTTATTGTATCTGGTGG+TGG 0.323994 7_1:-58799330 None:intergenic
GTTCCATACCGGCGTAAATC+AGG 0.326139 7_1:+58801601 Msa1026610:CDS
CATACCTTATGGTCAAATAT+TGG 0.326860 7_1:+58802811 Msa1026610:three_prime_UTR
TCTACTTCTAGAACCGAAAA+TGG 0.337783 7_1:-58801658 None:intergenic
TGATTTAATACGACTGTGTA+TGG 0.339314 7_1:+58797339 Msa1026610:five_prime_UTR
AATGGTTACCTAGAAAGTTT+TGG 0.349626 7_1:-58801019 None:intergenic
AATCAAGATTCCTGCGGAAA+TGG 0.355705 7_1:-58799206 None:intergenic
ATGATTATAATTTGACCATA+TGG 0.358478 7_1:+58802778 Msa1026610:three_prime_UTR
ATTCAATTGCACCTCTTCAT+AGG 0.361260 7_1:-58802944 None:intergenic
CCCTAAACCAGGTAAAGGTT+TGG 0.367667 7_1:+58802744 Msa1026610:three_prime_UTR
CCGAAAATGGCCTCCTGATT+CGG 0.370780 7_1:-58801645 None:intergenic
TCATGTTTCCCTTGCAAACT+AGG 0.375599 7_1:-58798668 None:intergenic
ATTGTATCTGGTGGTGGGTC+AGG 0.376926 7_1:-58799324 None:intergenic
GATGACAAACGTCATAGGTT+AGG 0.387281 7_1:+58800917 Msa1026610:CDS
TACCGAATGGTTCCGGTACT+AGG 0.387844 7_1:+58799232 Msa1026610:CDS
CCTAAACCAGGTAAAGGTTT+GGG 0.388936 7_1:+58802745 Msa1026610:three_prime_UTR
TATGCTGACAGGTTCTGATC+TGG 0.389935 7_1:+58797995 Msa1026610:intron
ATCCCTGAAACTGCAACTAT+TGG 0.394539 7_1:+58800265 Msa1026610:CDS
GCATTGTTGTTGAGACCAAT+AGG 0.397180 7_1:-58802541 None:intergenic
GATTCTTTACCGAATGGTTC+CGG 0.397478 7_1:+58799225 Msa1026610:CDS
ATGATGACGAAAACTTTGTT+AGG 0.398972 7_1:+58799271 Msa1026610:CDS
TCTTATCTGCTCATGCCTAT+TGG 0.403689 7_1:+58802526 Msa1026610:CDS
ACTTTGGACAGCGCCGAATC+AGG 0.407176 7_1:+58801632 Msa1026610:CDS
TCGAGAAGCTCTTGAGGAAC+AGG 0.408362 7_1:-58802498 None:intergenic
CATTGGAGGGCCATTTCCGC+AGG 0.422303 7_1:+58799196 Msa1026610:CDS
AGAAGTAGAAGCATTGGTTC+AGG 0.423386 7_1:+58801672 Msa1026610:CDS
CACGTAGGCATCCTTCTTCA+AGG 0.423941 7_1:+58800842 Msa1026610:CDS
ACCAGATACAATAAAGGTTA+AGG 0.432280 7_1:+58799335 Msa1026610:CDS
GGTTTAGGGAATATAAATTA+CGG 0.434535 7_1:-58802730 None:intergenic
CTTACCAATATTTGACCATA+AGG 0.438301 7_1:-58802815 None:intergenic
TTTCCTACCGTTACAACCCT+TGG 0.440877 7_1:-58799960 None:intergenic
CAGTTGATTCTTCTTGTACA+AGG 0.447047 7_1:+58799757 Msa1026610:CDS
AACTCTGAGTCTTCTGCAAA+AGG 0.448193 7_1:-58798496 None:intergenic
TTTCATGACAATCATCTTGA+AGG 0.449326 7_1:+58799015 Msa1026610:CDS
CCTTTATTGTATCTGGTGGT+GGG 0.454587 7_1:-58799329 None:intergenic
AAGGAGGAGCAATTTGAGAA+TGG 0.454790 7_1:+58798614 Msa1026610:CDS
ATGCTGACAGGTTCTGATCT+GGG 0.454851 7_1:+58797996 Msa1026610:intron
TCAAAATTCTGCAGGATAAG+TGG 0.457423 7_1:+58802424 Msa1026610:intron
TTTAGGGGAGGGGTACAATC+AGG 0.460652 7_1:+58798414 Msa1026610:intron
TCTTTCTTCAATATGTAAGA+AGG 0.463690 7_1:-58802589 None:intergenic
CTAGAGCTTCAAGATCTCCT+AGG 0.464029 7_1:+58798145 Msa1026610:CDS
ACTTGCAGTGAAGTTGTCTC+TGG 0.465134 7_1:+58798638 Msa1026610:CDS
TCATGTGGAGAAACCTTCAT+TGG 0.466265 7_1:+58799179 Msa1026610:CDS
CCCACCACCAGATACAATAA+AGG 0.467536 7_1:+58799329 Msa1026610:CDS
AACCAATAGTTGCAGTTTCA+GGG 0.467791 7_1:-58800267 None:intergenic
TATGATTATGCAGAAGAGGT+TGG 0.467837 7_1:+58798095 Msa1026610:exon
TGCTTGTATCTGATTGCTGT+CGG 0.468760 7_1:-58798444 None:intergenic
TTGGTCGTGAACCAGTGGTT+AGG 0.470589 7_1:-58801000 None:intergenic
AATATACATGTTTAGGGGAG+GGG 0.471588 7_1:+58798404 Msa1026610:intron
AAAATGAAAACAGGAAAAGT+AGG 0.472361 7_1:-58797168 None:intergenic
GACCCTTGTTTCCTAACCAC+TGG 0.473534 7_1:+58800989 Msa1026610:CDS
GAAACTTTCTCCAGAGTCAC+TGG 0.475737 7_1:+58798982 Msa1026610:intron
CGGAAATGGCCCTCCAATGA+AGG 0.478640 7_1:-58799192 None:intergenic
TGTATCTCGGGAACGTTCTA+CGG 0.481631 7_1:+58801441 Msa1026610:CDS
AAGGAACATATAATGTATCT+CGG 0.482346 7_1:+58801428 Msa1026610:CDS
ATTCTTTGAGTTCAGTTCAG+TGG 0.484041 7_1:-58799295 None:intergenic
CTCAAGATGACAAACGTCAT+AGG 0.485216 7_1:+58800912 Msa1026610:CDS
TCGAACTTATGTCGATTTGA+AGG 0.486100 7_1:+58801832 Msa1026610:CDS
GCTTGTATCTGATTGCTGTC+GGG 0.486132 7_1:-58798443 None:intergenic
ATTAAGTAATTTCCTAGTAC+CGG 0.489621 7_1:-58799244 None:intergenic
TAATCTTCTTCCCTTGAAGA+AGG 0.490156 7_1:-58800853 None:intergenic
TATCTGCTTCAGATTCAAAC+AGG 0.493220 7_1:+58797474 Msa1026610:five_prime_UTR
GTATGGTAAATGTAACCATA+TGG 0.493229 7_1:-58802793 None:intergenic
ATGACAAACGTCATAGGTTA+GGG 0.494107 7_1:+58800918 Msa1026610:CDS
AAATCAGGGAATTCCTACTT+TGG 0.494182 7_1:+58801616 Msa1026610:CDS
CATGTTTCCCTTGCAAACTA+GGG 0.496574 7_1:-58798667 None:intergenic
CCGTTACAACCCTTGGACTC+AGG 0.497977 7_1:-58799953 None:intergenic
CATGTCAAAGTGTCGAGCTC+TGG 0.501891 7_1:+58801540 Msa1026610:CDS
CTAGGAGATCTTGAAGCTCT+AGG 0.502668 7_1:-58798144 None:intergenic
ATATTCCCTAAACCAGGTAA+AGG 0.506636 7_1:+58802739 Msa1026610:three_prime_UTR
TCATCGAAACTCGAGGAAGC+TGG 0.506712 7_1:+58798025 Msa1026610:five_prime_UTR
GATGCAAGTCCTTTCGTGAA+TGG 0.506837 7_1:+58799357 Msa1026610:CDS
CACAGTTCCTGCCATTAACA+TGG 0.513821 7_1:+58801564 Msa1026610:CDS
TTAACCTTTATTGTATCTGG+TGG 0.516316 7_1:-58799333 None:intergenic
AAATCACCCAAACCTTTACC+TGG 0.517428 7_1:-58802751 None:intergenic
GATAACAGTGTCTTCAACAT+GGG 0.518933 7_1:+58797496 Msa1026610:five_prime_UTR
AAGATATGATTATGCAGAAG+AGG 0.522332 7_1:+58798091 Msa1026610:exon
TTCCTAGTACCGGAACCATT+CGG 0.524514 7_1:-58799234 None:intergenic
GATTATTATTTCTTATCAAG+TGG 0.525741 7_1:+58797286 Msa1026610:five_prime_UTR
CATCTTGAGATATCCCGGTC+TGG 0.533217 7_1:-58800898 None:intergenic
GGTTCTAGAAGTAGAAGCAT+TGG 0.533999 7_1:+58801666 Msa1026610:CDS
TTAACACCAACAATAATCAC+TGG 0.535987 7_1:-58797315 None:intergenic
CATTAGCTGTGGTTCCATAC+CGG 0.536414 7_1:+58801590 Msa1026610:CDS
AATCTTGATTCTTTACCGAA+TGG 0.536477 7_1:+58799219 Msa1026610:CDS
CAATATTTGACCATAAGGTA+TGG 0.540732 7_1:-58802810 None:intergenic
TGCTGACAGGTTCTGATCTG+GGG 0.544676 7_1:+58797997 Msa1026610:intron
GGATGTGTCCCTAGTTTGCA+AGG 0.546500 7_1:+58798659 Msa1026610:CDS
CATAAGTTCGATGCTTTGCA+TGG 0.547294 7_1:-58801820 None:intergenic
ATAATGATGATCTTTAATTG+TGG 0.549870 7_1:+58797362 Msa1026610:five_prime_UTR
AGTTGATTCTTCTTGTACAA+GGG 0.551085 7_1:+58799758 Msa1026610:CDS
GAGGCCGTGACAACTATACT+TGG 0.552044 7_1:+58800809 Msa1026610:CDS
GTTCTATAAATCCATCAGAT+CGG 0.553470 7_1:-58799119 None:intergenic
AGGAACATATAATGTATCTC+GGG 0.554305 7_1:+58801429 Msa1026610:CDS
TATTCAAGACATTGTTCACA+TGG 0.556687 7_1:-58797259 None:intergenic
GTCTCCAAGTATAGTTGTCA+CGG 0.557099 7_1:-58800813 None:intergenic
AGTAAAACTTTGATCCAGAC+CGG 0.558827 7_1:+58800884 Msa1026610:CDS
TTTGTCATCTTGAGATATCC+CGG 0.559326 7_1:-58800903 None:intergenic
AAAATTGAAAATTGTGCTGA+AGG 0.559691 7_1:+58801466 Msa1026610:CDS
TTCATGACAATCATCTTGAA+GGG 0.563839 7_1:+58799016 Msa1026610:CDS
TCACAGATGAGAACAATAGC+GGG 0.568398 7_1:+58799625 Msa1026610:intron
CCTGAGTCCAAGGGTTGTAA+CGG 0.569619 7_1:+58799953 Msa1026610:CDS
AATGCATCCATGTTAATGGC+AGG 0.570258 7_1:-58801571 None:intergenic
GATTCGGCGCTGTCCAAAGT+AGG 0.570894 7_1:-58801629 None:intergenic
GAACCAGTGGTTAGGAAACA+AGG 0.575620 7_1:-58800992 None:intergenic
TTCCATACCGGCGTAAATCA+GGG 0.575681 7_1:+58801602 Msa1026610:CDS
GATGAAATTCGATTATGTCT+CGG 0.581676 7_1:-58800953 None:intergenic
AGAAGTTCATCCTGAGTCCA+AGG 0.582995 7_1:+58799943 Msa1026610:CDS
TAGAGCTTCAAGATCTCCTA+GGG 0.583424 7_1:+58798146 Msa1026610:CDS
AAGGGAAACATGAAAATCAA+AGG 0.584574 7_1:+58798678 Msa1026610:CDS
GGATAACAGTGTCTTCAACA+TGG 0.584830 7_1:+58797495 Msa1026610:five_prime_UTR
TGCAACTATTGGTTCGCTGA+AGG 0.585230 7_1:+58800276 Msa1026610:CDS
TGTGGAGAAACCTTCATTGG+AGG 0.586442 7_1:+58799182 Msa1026610:CDS
GCAGGATAAGTGGAAGACCT+TGG 0.586572 7_1:+58802434 Msa1026610:intron
CATCGTCTACGTCTGATAGT+TGG 0.588516 7_1:+58799718 Msa1026610:CDS
AGCTGAAGCTTCTCCTACAG+AGG 0.590303 7_1:-58801506 None:intergenic
CTCAACATGGTCTCCTCTGT+AGG 0.594624 7_1:+58801493 Msa1026610:CDS
ATCTCTCCTCAGCAAAGGAG+AGG 0.595351 7_1:+58802471 Msa1026610:CDS
ACTCTGTCGAGAAGCTCTTG+AGG 0.596757 7_1:-58802504 None:intergenic
GTGGAGAAACCTTCATTGGA+GGG 0.598653 7_1:+58799183 Msa1026610:CDS
TCATAGGTTAGGGTTCATGT+TGG 0.599261 7_1:+58800928 Msa1026610:CDS
CAAGAATCTCTCCTCAGCAA+AGG 0.600327 7_1:+58802466 Msa1026610:CDS
GCTGACAGGTTCTGATCTGG+GGG 0.600596 7_1:+58797998 Msa1026610:intron
ATAAAGAATGACCTATGAAG+AGG 0.606065 7_1:+58802933 Msa1026610:three_prime_UTR
AACAAACAAGAGAATCAAGT+AGG 0.610792 7_1:+58798584 Msa1026610:CDS
TAATTTATATTCCCTAAACC+AGG 0.610951 7_1:+58802733 Msa1026610:three_prime_UTR
ACGTAGGCATCCTTCTTCAA+GGG 0.611020 7_1:+58800843 Msa1026610:CDS
GATAGTTGGTCTCACTGTCA+AGG 0.611926 7_1:+58799732 Msa1026610:CDS
GGTTCTCCTCTCCTTTGCTG+AGG 0.612253 7_1:-58802477 None:intergenic
GTCACAGATGAGAACAATAG+CGG 0.626501 7_1:+58799624 Msa1026610:intron
TAACATGGATGCATTAGCTG+TGG 0.627343 7_1:+58801579 Msa1026610:CDS
AGCTAAATACCATTCACGAA+AGG 0.627535 7_1:-58799366 None:intergenic
AGGAATTCCCTGATTTACGC+CGG 0.631176 7_1:-58801609 None:intergenic
GACAATCATCTTGAAGGGCA+AGG 0.632636 7_1:+58799021 Msa1026610:CDS
AGAAGCAGCATTATCAGGAA+CGG 0.641011 7_1:-58798519 None:intergenic
TTGGACAGCGCCGAATCAGG+AGG 0.641138 7_1:+58801635 Msa1026610:CDS
GAAGTTCATCCTGAGTCCAA+GGG 0.645051 7_1:+58799944 Msa1026610:CDS
GATTCTTGCTGTGTGAACCA+AGG 0.647449 7_1:-58802451 None:intergenic
TTGCAGTGCAGAAAATCATG+TGG 0.655690 7_1:+58799164 Msa1026610:CDS
AAGGACAGAATGTCATCGAG+AGG 0.656662 7_1:+58799040 Msa1026610:CDS
TCAAGTAGGATCGTTTAAGG+AGG 0.657594 7_1:+58798598 Msa1026610:CDS
AGGACAGAATGTCATCGAGA+GGG 0.662480 7_1:+58799041 Msa1026610:CDS
GATGTGTCCCTAGTTTGCAA+GGG 0.670828 7_1:+58798660 Msa1026610:CDS
ACATCTTTAATGTTACAACA+AGG 0.673582 7_1:+58801409 Msa1026610:CDS
ACTATCAGACGTAGACGATG+AGG 0.673863 7_1:-58799715 None:intergenic
AACCAGTGGTTAGGAAACAA+GGG 0.674807 7_1:-58800991 None:intergenic
TGCTGAAGGTGATCTCAACA+TGG 0.680051 7_1:+58801480 Msa1026610:CDS
GGGAGCGTCATCGAAACTCG+AGG 0.682002 7_1:+58798018 Msa1026610:five_prime_UTR
GTAAAACTTTGATCCAGACC+GGG 0.689896 7_1:+58800885 Msa1026610:CDS
ATAACAGTGTCTTCAACATG+GGG 0.693185 7_1:+58797497 Msa1026610:five_prime_UTR
GTAAAGAATCAAGATTCCTG+CGG 0.712651 7_1:-58799212 None:intergenic
CACAGATGAGAACAATAGCG+GGG 0.719728 7_1:+58799626 Msa1026610:intron
CTTGGAGACGAACTGCACGT+AGG 0.749412 7_1:+58800827 Msa1026610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAAAAAAAATGAAAAC+AGG - chr7_1:58797180-58797199 None:intergenic 10.0%
!!! TATTTTTTTTCTTCATTTAT+TGG + chr7_1:58797553-58797572 Msa1026610:intron 10.0%
!! TAATTCAATGTTAATTATAT+AGG + chr7_1:58798921-58798940 Msa1026610:intron 10.0%
!!! TTTTATTTAATATTTTGCAT+TGG + chr7_1:58801732-58801751 Msa1026610:intron 10.0%
!!! TTACTTTTGAAAATATTGAA+GGG + chr7_1:58797447-58797466 Msa1026610:five_prime_UTR 15.0%
!!! AAAAACTTTCTTTTCTTAAA+TGG - chr7_1:58799687-58799706 None:intergenic 15.0%
!! TTATATTAAATGATCAAATG+TGG - chr7_1:58800003-58800022 None:intergenic 15.0%
!! CATTTGATCATTTAATATAA+AGG + chr7_1:58800003-58800022 Msa1026610:intron 15.0%
!! TCATATAAGTACTTATATAT+AGG - chr7_1:58800612-58800631 None:intergenic 15.0%
!!! TTTGAAATATATTTTGACTT+TGG - chr7_1:58800675-58800694 None:intergenic 15.0%
!!! TATTTTGTTATTATTTTCAG+AGG + chr7_1:58800777-58800796 Msa1026610:intron 15.0%
!!! TCTTTAATAGTTAAAGTATT+AGG + chr7_1:58802298-58802317 Msa1026610:intron 15.0%
!!! GATTATTATTTCTTATCAAG+TGG + chr7_1:58797286-58797305 Msa1026610:five_prime_UTR 20.0%
!! ATAATGATGATCTTTAATTG+TGG + chr7_1:58797362-58797381 Msa1026610:five_prime_UTR 20.0%
!!! GTTACTTTTGAAAATATTGA+AGG + chr7_1:58797446-58797465 Msa1026610:five_prime_UTR 20.0%
!! AAAAAGAAATTCACTATAGT+TGG - chr7_1:58797807-58797826 None:intergenic 20.0%
!!! ATCTAATGACTTTTTCTTAT+AGG + chr7_1:58798057-58798076 Msa1026610:five_prime_UTR 20.0%
!!! TCTAATGACTTTTTCTTATA+GGG + chr7_1:58798058-58798077 Msa1026610:five_prime_UTR 20.0%
!! CTTGTAATAATTTGAGAAAA+TGG + chr7_1:58798266-58798285 Msa1026610:intron 20.0%
!! TAATTCCAATATACATGTTT+AGG + chr7_1:58798397-58798416 Msa1026610:intron 20.0%
!! AATTCCAATATACATGTTTA+GGG + chr7_1:58798398-58798417 Msa1026610:intron 20.0%
!!! TTTTTCTGGTATTAACATAA+AGG + chr7_1:58798559-58798578 Msa1026610:CDS 20.0%
!! AAATAAAAAAGAGAGAAAGA+AGG - chr7_1:58799827-58799846 None:intergenic 20.0%
!!! ATTTAATATAAAGGCTTGTT+TGG + chr7_1:58800012-58800031 Msa1026610:intron 20.0%
!! TTAAGTTATTTATCCAAACT+GGG + chr7_1:58800135-58800154 Msa1026610:intron 20.0%
!! AGAAAATCTATAGATACTTT+AGG + chr7_1:58801093-58801112 Msa1026610:intron 20.0%
!! TTTAGGTACAAACATATATT+TGG + chr7_1:58801110-58801129 Msa1026610:intron 20.0%
!! ATGATTATAATTTGACCATA+TGG + chr7_1:58802778-58802797 Msa1026610:three_prime_UTR 20.0%
! AAAATGAAAACAGGAAAAGT+AGG - chr7_1:58797171-58797190 None:intergenic 25.0%
!!! TTTTTTCCAGTGATTATTGT+TGG + chr7_1:58797309-58797328 Msa1026610:five_prime_UTR 25.0%
!! GAAAATAATTTTCTTACCCT+AGG - chr7_1:58798165-58798184 None:intergenic 25.0%
! TATTGTAATACAAGTCAGTA+GGG - chr7_1:58798200-58798219 None:intergenic 25.0%
! ATATTGTAATACAAGTCAGT+AGG - chr7_1:58798201-58798220 None:intergenic 25.0%
! ATTCCAATATACATGTTTAG+GGG + chr7_1:58798399-58798418 Msa1026610:intron 25.0%
!! GATACAAGCATTTGATATTT+TGG + chr7_1:58798457-58798476 Msa1026610:CDS 25.0%
! AAAATCAAAGGTAAATGTTG+AGG + chr7_1:58798690-58798709 Msa1026610:intron 25.0%
!! GCAGAATAATGAATTTTCAT+TGG + chr7_1:58798805-58798824 Msa1026610:intron 25.0%
! ATTAAGTAATTTCCTAGTAC+CGG - chr7_1:58799247-58799266 None:intergenic 25.0%
! AATTACTGCAAATGATAGTT+TGG - chr7_1:58799897-58799916 None:intergenic 25.0%
! CTTAAGTTATTTATCCAAAC+TGG + chr7_1:58800134-58800153 Msa1026610:intron 25.0%
!!! TCTAACATGCTTGTTATATA+AGG + chr7_1:58800164-58800183 Msa1026610:intron 25.0%
! TACTTATATATAGGCTATCT+TGG - chr7_1:58800603-58800622 None:intergenic 25.0%
!! GTATCTATAGATTTTCTCTA+AGG - chr7_1:58801090-58801109 None:intergenic 25.0%
!! TATGCTCATTTTCAATAAAC+AGG + chr7_1:58801380-58801399 Msa1026610:intron 25.0%
! ACATCTTTAATGTTACAACA+AGG + chr7_1:58801409-58801428 Msa1026610:CDS 25.0%
! AAGGAACATATAATGTATCT+CGG + chr7_1:58801428-58801447 Msa1026610:CDS 25.0%
! AAAATTGAAAATTGTGCTGA+AGG + chr7_1:58801466-58801485 Msa1026610:CDS 25.0%
! TTTCTAATACAGGAAATAAC+TGG - chr7_1:58802008-58802027 None:intergenic 25.0%
!! TTCGAGAAATTTTCTAATAC+AGG - chr7_1:58802018-58802037 None:intergenic 25.0%
! TCTTTCTTCAATATGTAAGA+AGG - chr7_1:58802592-58802611 None:intergenic 25.0%
! GGTTTAGGGAATATAAATTA+CGG - chr7_1:58802733-58802752 None:intergenic 25.0%
! TAATTTATATTCCCTAAACC+AGG + chr7_1:58802733-58802752 Msa1026610:three_prime_UTR 25.0%
TATTCAAGACATTGTTCACA+TGG - chr7_1:58797262-58797281 None:intergenic 30.0%
TTAACACCAACAATAATCAC+TGG - chr7_1:58797318-58797337 None:intergenic 30.0%
TGATTTAATACGACTGTGTA+TGG + chr7_1:58797339-58797358 Msa1026610:five_prime_UTR 30.0%
ATTCATGAAAATAACTCCTC+GGG - chr7_1:58797677-58797696 None:intergenic 30.0%
CATTCATGAAAATAACTCCT+CGG - chr7_1:58797678-58797697 None:intergenic 30.0%
TCATGAATGTGAGATGATAT+TGG + chr7_1:58797689-58797708 Msa1026610:intron 30.0%
AAAATGTGTTAAGGCCTTAA+GGG - chr7_1:58797896-58797915 None:intergenic 30.0%
TTGAATTTGATTATGCTGAC+AGG + chr7_1:58797984-58798003 Msa1026610:intron 30.0%
AAGATATGATTATGCAGAAG+AGG + chr7_1:58798091-58798110 Msa1026610:exon 30.0%
!! AGGTTGGATTACAGTTTTAA+TGG + chr7_1:58798111-58798130 Msa1026610:CDS 30.0%
TTCAATGTTATCACATGTGT+CGG + chr7_1:58798295-58798314 Msa1026610:intron 30.0%
ATGCCTTCAATCAGAAATAT+CGG + chr7_1:58798333-58798352 Msa1026610:intron 30.0%
AACAAACAAGAGAATCAAGT+AGG + chr7_1:58798584-58798603 Msa1026610:CDS 30.0%
AAGGGAAACATGAAAATCAA+AGG + chr7_1:58798678-58798697 Msa1026610:CDS 30.0%
GCGTTATAATGAATTCTCAT+TGG - chr7_1:58798753-58798772 None:intergenic 30.0%
! CTTCTTTTCTCATTGTTGAA+TGG + chr7_1:58798869-58798888 Msa1026610:intron 30.0%
TTTCATGACAATCATCTTGA+AGG + chr7_1:58799015-58799034 Msa1026610:CDS 30.0%
TTCATGACAATCATCTTGAA+GGG + chr7_1:58799016-58799035 Msa1026610:CDS 30.0%
GTTCTATAAATCCATCAGAT+CGG - chr7_1:58799122-58799141 None:intergenic 30.0%
! TGCAATCTTTTGATACTCTT+TGG - chr7_1:58799149-58799168 None:intergenic 30.0%
AATCTTGATTCTTTACCGAA+TGG + chr7_1:58799219-58799238 Msa1026610:CDS 30.0%
! ATGATGACGAAAACTTTGTT+AGG + chr7_1:58799271-58799290 Msa1026610:CDS 30.0%
TTAACCTTTATTGTATCTGG+TGG - chr7_1:58799336-58799355 None:intergenic 30.0%
ACCAGATACAATAAAGGTTA+AGG + chr7_1:58799335-58799354 Msa1026610:CDS 30.0%
TCCTTAACCTTTATTGTATC+TGG - chr7_1:58799339-58799358 None:intergenic 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG + chr7_1:58799535-58799554 Msa1026610:intron 30.0%
TCTGTGACAAAAACAATTGA+TGG - chr7_1:58799612-58799631 None:intergenic 30.0%
! AGTTGATTCTTCTTGTACAA+GGG + chr7_1:58799758-58799777 Msa1026610:CDS 30.0%
! TTTGCAATCTGTTTCCTTTT+AGG + chr7_1:58799844-58799863 Msa1026610:intron 30.0%
AACGAAAAAACAAGCCTAAA+AGG - chr7_1:58799861-58799880 None:intergenic 30.0%
!!! TTAGGCTTGTTTTTTCGTTT+TGG + chr7_1:58799862-58799881 Msa1026610:intron 30.0%
GAGCTTATGAAAACAACTTA+TGG + chr7_1:58800089-58800108 Msa1026610:intron 30.0%
ATAACAAGCATGTTAGACTA+AGG - chr7_1:58800161-58800180 None:intergenic 30.0%
GGATATCAATAAAAAGCTCT+GGG - chr7_1:58800249-58800268 None:intergenic 30.0%
! TCATGCTTTTACTAAATCCA+TGG + chr7_1:58800378-58800397 Msa1026610:intron 30.0%
AGAGTGCGAAAAATATACAA+TGG - chr7_1:58800735-58800754 None:intergenic 30.0%
! TTATTTTCAGAGGACAGTAA+TGG + chr7_1:58800787-58800806 Msa1026610:intron 30.0%
GATGAAATTCGATTATGTCT+CGG - chr7_1:58800956-58800975 None:intergenic 30.0%
! AATGGTTACCTAGAAAGTTT+TGG - chr7_1:58801022-58801041 None:intergenic 30.0%
TTCTAGGTAACCATTATGTA+CGG + chr7_1:58801027-58801046 Msa1026610:intron 30.0%
AGGAACATATAATGTATCTC+GGG + chr7_1:58801429-58801448 Msa1026610:CDS 30.0%
AAAACACTAAACAAACCTTC+CGG - chr7_1:58801716-58801735 None:intergenic 30.0%
ATATATTACTTGTGTGTTGC+AGG + chr7_1:58801768-58801787 Msa1026610:intron 30.0%
CAAGTAGTTAGAATGGAAAA+AGG - chr7_1:58801888-58801907 None:intergenic 30.0%
CTTTATGCAAGTAGTTAGAA+TGG - chr7_1:58801895-58801914 None:intergenic 30.0%
CATTCTAACTACTTGCATAA+AGG + chr7_1:58801893-58801912 Msa1026610:intron 30.0%
! GAAGAGTTAGCTTAAAACAT+TGG + chr7_1:58801936-58801955 Msa1026610:intron 30.0%
TCTTGATCTAATGATCCAAT+CGG + chr7_1:58802166-58802185 Msa1026610:intron 30.0%
!! TGTAACACCATAGTCTTATT+AGG + chr7_1:58802249-58802268 Msa1026610:intron 30.0%
!! GTAACACCATAGTCTTATTA+GGG + chr7_1:58802250-58802269 Msa1026610:intron 30.0%
!!! TAGGAAGCATTTTAAAGACT+AGG + chr7_1:58802317-58802336 Msa1026610:intron 30.0%
GTATGGTAAATGTAACCATA+TGG - chr7_1:58802796-58802815 None:intergenic 30.0%
GTTACATTTACCATACCTTA+TGG + chr7_1:58802800-58802819 Msa1026610:three_prime_UTR 30.0%
CAATATTTGACCATAAGGTA+TGG - chr7_1:58802813-58802832 None:intergenic 30.0%
CATACCTTATGGTCAAATAT+TGG + chr7_1:58802811-58802830 Msa1026610:three_prime_UTR 30.0%
CTTACCAATATTTGACCATA+AGG - chr7_1:58802818-58802837 None:intergenic 30.0%
ATAAAGAATGACCTATGAAG+AGG + chr7_1:58802933-58802952 Msa1026610:three_prime_UTR 30.0%
!! GTTTGATCTGTGTGTTTTTG+TGG + chr7_1:58797209-58797228 Msa1026610:five_prime_UTR 35.0%
TATCTGCTTCAGATTCAAAC+AGG + chr7_1:58797474-58797493 Msa1026610:five_prime_UTR 35.0%
GATAACAGTGTCTTCAACAT+GGG + chr7_1:58797496-58797515 Msa1026610:five_prime_UTR 35.0%
ATAACAGTGTCTTCAACATG+GGG + chr7_1:58797497-58797516 Msa1026610:five_prime_UTR 35.0%
! AATTTGCATTTTCCAGTTGC+TGG - chr7_1:58797625-58797644 None:intergenic 35.0%
CTATCGATACTAATCATGCA+CGG + chr7_1:58797843-58797862 Msa1026610:intron 35.0%
AAATGTGTTAAGGCCTTAAG+GGG - chr7_1:58797895-58797914 None:intergenic 35.0%
CAAAATGTGTTAAGGCCTTA+AGG - chr7_1:58797897-58797916 None:intergenic 35.0%
CTCCTATGCAAAATGTGTTA+AGG - chr7_1:58797905-58797924 None:intergenic 35.0%
TATGATTATGCAGAAGAGGT+TGG + chr7_1:58798095-58798114 Msa1026610:exon 35.0%
! GTACCGATATTTCTGATTGA+AGG - chr7_1:58798339-58798358 None:intergenic 35.0%
CAGAAATATCGGTACTACAT+AGG + chr7_1:58798344-58798363 Msa1026610:intron 35.0%
CAATATACATGTTTAGGGGA+GGG + chr7_1:58798403-58798422 Msa1026610:intron 35.0%
AATATACATGTTTAGGGGAG+GGG + chr7_1:58798404-58798423 Msa1026610:intron 35.0%
!!! TGATATTTTGGCTAGTGTAG+CGG + chr7_1:58798469-58798488 Msa1026610:CDS 35.0%
TTAATACCAGAAAAAGCGAG+AGG - chr7_1:58798554-58798573 None:intergenic 35.0%
GAATCAAGTAGGATCGTTTA+AGG + chr7_1:58798595-58798614 Msa1026610:CDS 35.0%
ATCAAAGGTAAATGTTGAGG+AGG + chr7_1:58798693-58798712 Msa1026610:intron 35.0%
GTAAATGTTGAGGAGGTTAA+TGG + chr7_1:58798700-58798719 Msa1026610:intron 35.0%
! TCTTTTGATACTCTTTGGCT+TGG - chr7_1:58799144-58799163 None:intergenic 35.0%
GTAAAGAATCAAGATTCCTG+CGG - chr7_1:58799215-58799234 None:intergenic 35.0%
! ATTCTTTGAGTTCAGTTCAG+TGG - chr7_1:58799298-58799317 None:intergenic 35.0%
AGCTAAATACCATTCACGAA+AGG - chr7_1:58799369-58799388 None:intergenic 35.0%
! CAGTTGATTCTTCTTGTACA+AGG + chr7_1:58799757-58799776 Msa1026610:CDS 35.0%
TCTTCTTGTACAAGGGTTAA+TGG + chr7_1:58799765-58799784 Msa1026610:intron 35.0%
AAATGTGGTCAATCATTTCG+CGG - chr7_1:58799988-58800007 None:intergenic 35.0%
! TGTTATATAAGGCTCTGACA+TGG + chr7_1:58800175-58800194 Msa1026610:intron 35.0%
!! AAAAAGCTCTGGGACTTTAA+AGG - chr7_1:58800239-58800258 None:intergenic 35.0%
GGGATATCAATAAAAAGCTC+TGG - chr7_1:58800250-58800269 None:intergenic 35.0%
AACCAATAGTTGCAGTTTCA+GGG - chr7_1:58800270-58800289 None:intergenic 35.0%
! TGCTTTTACTAAATCCATGG+AGG + chr7_1:58800381-58800400 Msa1026610:intron 35.0%
TAGTACAATACTGAAGCATG+TGG + chr7_1:58800405-58800424 Msa1026610:intron 35.0%
TAAGTACTTGTGAGACTGTT+TGG + chr7_1:58800512-58800531 Msa1026610:intron 35.0%
AGACTGTTTGGAAAAGCTTA+TGG + chr7_1:58800524-58800543 Msa1026610:intron 35.0%
TAGCTTACGATATGTCCATA+AGG + chr7_1:58800550-58800569 Msa1026610:intron 35.0%
AATCAAGTGAAAACGCCTTA+TGG - chr7_1:58800568-58800587 None:intergenic 35.0%
TAATCTTCTTCCCTTGAAGA+AGG - chr7_1:58800856-58800875 None:intergenic 35.0%
AGTAAAACTTTGATCCAGAC+CGG + chr7_1:58800884-58800903 Msa1026610:CDS 35.0%
TTTGTCATCTTGAGATATCC+CGG - chr7_1:58800906-58800925 None:intergenic 35.0%
ATGACAAACGTCATAGGTTA+GGG + chr7_1:58800918-58800937 Msa1026610:CDS 35.0%
TGACGAAAATCCGTACATAA+TGG - chr7_1:58801040-58801059 None:intergenic 35.0%
! ATTATGTACGGATTTTCGTC+AGG + chr7_1:58801039-58801058 Msa1026610:intron 35.0%
ACTAGGAATGTGCAAAATGA+AGG - chr7_1:58801281-58801300 None:intergenic 35.0%
AGCTAATGCATCCATGTTAA+TGG - chr7_1:58801578-58801597 None:intergenic 35.0%
AAATCAGGGAATTCCTACTT+TGG + chr7_1:58801616-58801635 Msa1026610:CDS 35.0%
!! TCTACTTCTAGAACCGAAAA+TGG - chr7_1:58801661-58801680 None:intergenic 35.0%
!! TCGAACTTATGTCGATTTGA+AGG + chr7_1:58801832-58801851 Msa1026610:CDS 35.0%
AAGCTAACTCTTCCACTATT+TGG - chr7_1:58801929-58801948 None:intergenic 35.0%
! AGCTTAAAACATTGGCTAGT+AGG + chr7_1:58801944-58801963 Msa1026610:intron 35.0%
CGATTTAGACTGTCTGATTA+AGG + chr7_1:58802074-58802093 Msa1026610:intron 35.0%
TTAGACTGTCTGATTAAGGT+TGG + chr7_1:58802078-58802097 Msa1026610:intron 35.0%
AATCCTTTCTCTATGACTGT+GGG - chr7_1:58802225-58802244 None:intergenic 35.0%
AAATCCTTTCTCTATGACTG+TGG - chr7_1:58802226-58802245 None:intergenic 35.0%
! CGTGATTTTCAAAATTCTGC+AGG + chr7_1:58802416-58802435 Msa1026610:intron 35.0%
TCAAAATTCTGCAGGATAAG+TGG + chr7_1:58802424-58802443 Msa1026610:intron 35.0%
ATATTCCCTAAACCAGGTAA+AGG + chr7_1:58802739-58802758 Msa1026610:three_prime_UTR 35.0%
ATTCAATTGCACCTCTTCAT+AGG - chr7_1:58802947-58802966 None:intergenic 35.0%
GGATAACAGTGTCTTCAACA+TGG + chr7_1:58797495-58797514 Msa1026610:five_prime_UTR 40.0%
TGCTGAACCTTATCTCATCT+TGG + chr7_1:58797587-58797606 Msa1026610:intron 40.0%
TGAAGGTCCAAGATGAGATA+AGG - chr7_1:58797597-58797616 None:intergenic 40.0%
! GTTTTGTGTTAAGCCCCTTA+AGG + chr7_1:58797879-58797898 Msa1026610:intron 40.0%
! GGCCTTAACACATTTTGCAT+AGG + chr7_1:58797900-58797919 Msa1026610:intron 40.0%
TAGAGCTTCAAGATCTCCTA+GGG + chr7_1:58798146-58798165 Msa1026610:CDS 40.0%
TACAAGTCAGTAGGGAATGT+AGG - chr7_1:58798192-58798211 None:intergenic 40.0%
ACAATATGAATCACCGAGAC+AGG + chr7_1:58798214-58798233 Msa1026610:intron 40.0%
CCTCCCCTAAACATGTATAT+TGG - chr7_1:58798405-58798424 None:intergenic 40.0%
CCAATATACATGTTTAGGGG+AGG + chr7_1:58798402-58798421 Msa1026610:intron 40.0%
TGCTTGTATCTGATTGCTGT+CGG - chr7_1:58798447-58798466 None:intergenic 40.0%
!!! GATATTTTGGCTAGTGTAGC+GGG + chr7_1:58798470-58798489 Msa1026610:CDS 40.0%
AACTCTGAGTCTTCTGCAAA+AGG - chr7_1:58798499-58798518 None:intergenic 40.0%
AGAAGCAGCATTATCAGGAA+CGG - chr7_1:58798522-58798541 None:intergenic 40.0%
!!! AAAGATCCTCTCGCTTTTTC+TGG + chr7_1:58798545-58798564 Msa1026610:CDS 40.0%
TCAAGTAGGATCGTTTAAGG+AGG + chr7_1:58798598-58798617 Msa1026610:CDS 40.0%
AAGGAGGAGCAATTTGAGAA+TGG + chr7_1:58798614-58798633 Msa1026610:CDS 40.0%
CATGTTTCCCTTGCAAACTA+GGG - chr7_1:58798670-58798689 None:intergenic 40.0%
TCATGTTTCCCTTGCAAACT+AGG - chr7_1:58798671-58798690 None:intergenic 40.0%
TTGCAGTGCAGAAAATCATG+TGG + chr7_1:58799164-58799183 Msa1026610:CDS 40.0%
TCATGTGGAGAAACCTTCAT+TGG + chr7_1:58799179-58799198 Msa1026610:CDS 40.0%
AATCAAGATTCCTGCGGAAA+TGG - chr7_1:58799209-58799228 None:intergenic 40.0%
GATTCTTTACCGAATGGTTC+CGG + chr7_1:58799225-58799244 Msa1026610:CDS 40.0%
CCTTTATTGTATCTGGTGGT+GGG - chr7_1:58799332-58799351 None:intergenic 40.0%
ACCTTTATTGTATCTGGTGG+TGG - chr7_1:58799333-58799352 None:intergenic 40.0%
!! CACTGGCTTGAATCACAATT+TGG - chr7_1:58799447-58799466 None:intergenic 40.0%
! TTGCTGCTATTTGACAACAC+TGG - chr7_1:58799464-58799483 None:intergenic 40.0%
TAGCGGCTATATCATTGTAG+CGG + chr7_1:58799552-58799571 Msa1026610:intron 40.0%
GTCACAGATGAGAACAATAG+CGG + chr7_1:58799624-58799643 Msa1026610:intron 40.0%
TCACAGATGAGAACAATAGC+GGG + chr7_1:58799625-58799644 Msa1026610:intron 40.0%
! GCTTGTTTGGATTGACTTAC+TGG + chr7_1:58800025-58800044 Msa1026610:intron 40.0%
ATCCCTGAAACTGCAACTAT+TGG + chr7_1:58800265-58800284 Msa1026610:CDS 40.0%
GAACCAATAGTTGCAGTTTC+AGG - chr7_1:58800271-58800290 None:intergenic 40.0%
CCTTGAACCTAGCATCTTTA+GGG + chr7_1:58800451-58800470 Msa1026610:intron 40.0%
TCACAAGTACTTACACTAGC+AGG - chr7_1:58800505-58800524 None:intergenic 40.0%
! AGGCTATCTTGGCGATTTTA+TGG - chr7_1:58800592-58800611 None:intergenic 40.0%
! TTTTCAGAGGACAGTAATGG+AGG + chr7_1:58800790-58800809 Msa1026610:intron 40.0%
GTCTCCAAGTATAGTTGTCA+CGG - chr7_1:58800816-58800835 None:intergenic 40.0%
GTAAAACTTTGATCCAGACC+GGG + chr7_1:58800885-58800904 Msa1026610:CDS 40.0%
CTCAAGATGACAAACGTCAT+AGG + chr7_1:58800912-58800931 Msa1026610:CDS 40.0%
GATGACAAACGTCATAGGTT+AGG + chr7_1:58800917-58800936 Msa1026610:CDS 40.0%
TCATAGGTTAGGGTTCATGT+TGG + chr7_1:58800928-58800947 Msa1026610:CDS 40.0%
AACCAGTGGTTAGGAAACAA+GGG - chr7_1:58800994-58801013 None:intergenic 40.0%
GTTCACGACCAAAACTTTCT+AGG + chr7_1:58801011-58801030 Msa1026610:CDS 40.0%
!!! ATTTTCTCTAAGGCGTCGTT+TGG - chr7_1:58801080-58801099 None:intergenic 40.0%
TCCAACATTGAGTCAGTATC+AGG + chr7_1:58801335-58801354 Msa1026610:intron 40.0%
AATGCATCCATGTTAATGGC+AGG - chr7_1:58801574-58801593 None:intergenic 40.0%
TAACATGGATGCATTAGCTG+TGG + chr7_1:58801579-58801598 Msa1026610:CDS 40.0%
!! GGTTCTAGAAGTAGAAGCAT+TGG + chr7_1:58801666-58801685 Msa1026610:CDS 40.0%
!! AGAAGTAGAAGCATTGGTTC+AGG + chr7_1:58801672-58801691 Msa1026610:CDS 40.0%
GTTCAGGCAGTTGAAAAACT+AGG + chr7_1:58801688-58801707 Msa1026610:CDS 40.0%
GCAGTTGAAAAACTAGGAAC+CGG + chr7_1:58801694-58801713 Msa1026610:CDS 40.0%
TTGAAAAACTAGGAACCGGA+AGG + chr7_1:58801698-58801717 Msa1026610:CDS 40.0%
TATTACTTGTGTGTTGCAGG+TGG + chr7_1:58801771-58801790 Msa1026610:intron 40.0%
CATAAGTTCGATGCTTTGCA+TGG - chr7_1:58801823-58801842 None:intergenic 40.0%
! GGTTCTTTTGTGCCAAATAG+TGG + chr7_1:58801914-58801933 Msa1026610:intron 40.0%
ACTGTCTGATTAAGGTTGGA+TGG + chr7_1:58802082-58802101 Msa1026610:intron 40.0%
! GAAGTGCCCTAATAAGACTA+TGG - chr7_1:58802259-58802278 None:intergenic 40.0%
AGTATGAACTCTCTGCATTG+TGG + chr7_1:58802384-58802403 Msa1026610:intron 40.0%
TCTTATCTGCTCATGCCTAT+TGG + chr7_1:58802526-58802545 Msa1026610:CDS 40.0%
! GCATTGTTGTTGAGACCAAT+AGG - chr7_1:58802544-58802563 None:intergenic 40.0%
CCAAACCTTTACCTGGTTTA+GGG - chr7_1:58802747-58802766 None:intergenic 40.0%
CCTAAACCAGGTAAAGGTTT+GGG + chr7_1:58802745-58802764 Msa1026610:three_prime_UTR 40.0%
AAATCACCCAAACCTTTACC+TGG - chr7_1:58802754-58802773 None:intergenic 40.0%
ACCTTCATGATTCCAGCAAC+TGG + chr7_1:58797610-58797629 Msa1026610:intron 45.0%
TCCAGTTGCTGGAATCATGA+AGG - chr7_1:58797614-58797633 None:intergenic 45.0%
TATCATACAACTCAGTCCCG+AGG + chr7_1:58797658-58797677 Msa1026610:intron 45.0%
! TATGCTGACAGGTTCTGATC+TGG + chr7_1:58797995-58798014 Msa1026610:intron 45.0%
! ATGCTGACAGGTTCTGATCT+GGG + chr7_1:58797996-58798015 Msa1026610:intron 45.0%
CTAGGAGATCTTGAAGCTCT+AGG - chr7_1:58798147-58798166 None:intergenic 45.0%
CTAGAGCTTCAAGATCTCCT+AGG + chr7_1:58798145-58798164 Msa1026610:CDS 45.0%
GCTTGTATCTGATTGCTGTC+GGG - chr7_1:58798446-58798465 None:intergenic 45.0%
TTCGCAGAAGCAGCATTATC+AGG - chr7_1:58798527-58798546 None:intergenic 45.0%
ACTTGCAGTGAAGTTGTCTC+TGG + chr7_1:58798638-58798657 Msa1026610:CDS 45.0%
! GATGTGTCCCTAGTTTGCAA+GGG + chr7_1:58798660-58798679 Msa1026610:CDS 45.0%
GAAACTTTCTCCAGAGTCAC+TGG + chr7_1:58798982-58799001 Msa1026610:intron 45.0%
TGATGAATCACCAGTGACTC+TGG - chr7_1:58798995-58799014 None:intergenic 45.0%
GACAATCATCTTGAAGGGCA+AGG + chr7_1:58799021-58799040 Msa1026610:CDS 45.0%
AAGGACAGAATGTCATCGAG+AGG + chr7_1:58799040-58799059 Msa1026610:CDS 45.0%
AGGACAGAATGTCATCGAGA+GGG + chr7_1:58799041-58799060 Msa1026610:CDS 45.0%
CGCATCAAAAACCGATCTGA+TGG + chr7_1:58799108-58799127 Msa1026610:CDS 45.0%
TGTGGAGAAACCTTCATTGG+AGG + chr7_1:58799182-58799201 Msa1026610:CDS 45.0%
GTGGAGAAACCTTCATTGGA+GGG + chr7_1:58799183-58799202 Msa1026610:CDS 45.0%
! TTCCTAGTACCGGAACCATT+CGG - chr7_1:58799237-58799256 None:intergenic 45.0%
CCCACCACCAGATACAATAA+AGG + chr7_1:58799329-58799348 Msa1026610:CDS 45.0%
GATGCAAGTCCTTTCGTGAA+TGG + chr7_1:58799357-58799376 Msa1026610:CDS 45.0%
CACAGATGAGAACAATAGCG+GGG + chr7_1:58799626-58799645 Msa1026610:intron 45.0%
ACTATCAGACGTAGACGATG+AGG - chr7_1:58799718-58799737 None:intergenic 45.0%
CATCGTCTACGTCTGATAGT+TGG + chr7_1:58799718-58799737 Msa1026610:CDS 45.0%
! GATAGTTGGTCTCACTGTCA+AGG + chr7_1:58799732-58799751 Msa1026610:CDS 45.0%
AGGGTTAATGGCACGAATCA+TGG + chr7_1:58799777-58799796 Msa1026610:intron 45.0%
AATGGCACGAATCATGGTAC+AGG + chr7_1:58799783-58799802 Msa1026610:intron 45.0%
AGAAGTTCATCCTGAGTCCA+AGG + chr7_1:58799943-58799962 Msa1026610:CDS 45.0%
GAAGTTCATCCTGAGTCCAA+GGG + chr7_1:58799944-58799963 Msa1026610:CDS 45.0%
TTTCCTACCGTTACAACCCT+TGG - chr7_1:58799963-58799982 None:intergenic 45.0%
TGTTAGACTAAGGCCCAGTT+TGG - chr7_1:58800151-58800170 None:intergenic 45.0%
!! TGCAACTATTGGTTCGCTGA+AGG + chr7_1:58800276-58800295 Msa1026610:CDS 45.0%
! CAGTATTGTACTAGCCTCCA+TGG - chr7_1:58800398-58800417 None:intergenic 45.0%
AAGATGCTAGGTTCAAGGCT+CGG - chr7_1:58800449-58800468 None:intergenic 45.0%
GCCTTGAACCTAGCATCTTT+AGG + chr7_1:58800450-58800469 Msa1026610:intron 45.0%
CCCTAAAGATGCTAGGTTCA+AGG - chr7_1:58800454-58800473 None:intergenic 45.0%
AAACAGGCCCTAAAGATGCT+AGG - chr7_1:58800461-58800480 None:intergenic 45.0%
!! TAGCATCTTTAGGGCCTGTT+TGG + chr7_1:58800460-58800479 Msa1026610:intron 45.0%
!! TCTTTAGGGCCTGTTTGGAT+CGG + chr7_1:58800465-58800484 Msa1026610:intron 45.0%
TCGAATAAGCCGATCCAAAC+AGG - chr7_1:58800477-58800496 None:intergenic 45.0%
CGCACTCTCACAATGTCTAT+TGG + chr7_1:58800747-58800766 Msa1026610:intron 45.0%
ACGTAGGCATCCTTCTTCAA+GGG + chr7_1:58800843-58800862 Msa1026610:CDS 45.0%
GAACCAGTGGTTAGGAAACA+AGG - chr7_1:58800995-58801014 None:intergenic 45.0%
!! AAGTTTTGGTCGTGAACCAG+TGG - chr7_1:58801008-58801027 None:intergenic 45.0%
!! GCCTGATACTGACTCAATGT+TGG - chr7_1:58801339-58801358 None:intergenic 45.0%
TGTATCTCGGGAACGTTCTA+CGG + chr7_1:58801441-58801460 Msa1026610:CDS 45.0%
TGCTGAAGGTGATCTCAACA+TGG + chr7_1:58801480-58801499 Msa1026610:CDS 45.0%
CACAGTTCCTGCCATTAACA+TGG + chr7_1:58801564-58801583 Msa1026610:CDS 45.0%
CATTAGCTGTGGTTCCATAC+CGG + chr7_1:58801590-58801609 Msa1026610:CDS 45.0%
TTCCATACCGGCGTAAATCA+GGG + chr7_1:58801602-58801621 Msa1026610:CDS 45.0%
AGGAATTCCCTGATTTACGC+CGG - chr7_1:58801612-58801631 None:intergenic 45.0%
ACATCCCAGCTCTCGTAAAT+AGG + chr7_1:58802108-58802127 Msa1026610:intron 45.0%
CATCCCAGCTCTCGTAAATA+GGG + chr7_1:58802109-58802128 Msa1026610:intron 45.0%
GTTCCCACAGTCATAGAGAA+AGG + chr7_1:58802219-58802238 Msa1026610:intron 45.0%
! GATTCTTGCTGTGTGAACCA+AGG - chr7_1:58802454-58802473 None:intergenic 45.0%
CAAGAATCTCTCCTCAGCAA+AGG + chr7_1:58802466-58802485 Msa1026610:CDS 45.0%
CCCTAAACCAGGTAAAGGTT+TGG + chr7_1:58802744-58802763 Msa1026610:three_prime_UTR 45.0%
CCCAAACCTTTACCTGGTTT+AGG - chr7_1:58802748-58802767 None:intergenic 45.0%
!!! TAATTTTTTTTTATACTTAT+TGG + chr7_1:58797947-58797966 Msa1026610:intron 5.0%
! TGCTGACAGGTTCTGATCTG+GGG + chr7_1:58797997-58798016 Msa1026610:intron 50.0%
TCATCGAAACTCGAGGAAGC+TGG + chr7_1:58798025-58798044 Msa1026610:five_prime_UTR 50.0%
TTGTGCAGTTGTGCCTGTCT+CGG - chr7_1:58798230-58798249 None:intergenic 50.0%
! TTTAGGGGAGGGGTACAATC+AGG + chr7_1:58798414-58798433 Msa1026610:intron 50.0%
! GGATGTGTCCCTAGTTTGCA+AGG + chr7_1:58798659-58798678 Msa1026610:CDS 50.0%
TACCGAATGGTTCCGGTACT+AGG + chr7_1:58799232-58799251 Msa1026610:CDS 50.0%
!! ATTGTATCTGGTGGTGGGTC+AGG - chr7_1:58799327-58799346 None:intergenic 50.0%
CCTGAGTCCAAGGGTTGTAA+CGG + chr7_1:58799953-58799972 Msa1026610:CDS 50.0%
AGTCCAAGGGTTGTAACGGT+AGG + chr7_1:58799957-58799976 Msa1026610:intron 50.0%
GAGGCCGTGACAACTATACT+TGG + chr7_1:58800809-58800828 Msa1026610:CDS 50.0%
CACGTAGGCATCCTTCTTCA+AGG + chr7_1:58800842-58800861 Msa1026610:CDS 50.0%
CATCTTGAGATATCCCGGTC+TGG - chr7_1:58800901-58800920 None:intergenic 50.0%
! GACCCTTGTTTCCTAACCAC+TGG + chr7_1:58800989-58801008 Msa1026610:CDS 50.0%
TTGGTCGTGAACCAGTGGTT+AGG - chr7_1:58801003-58801022 None:intergenic 50.0%
! TCGTCTCTCTCACATCGACT+AGG - chr7_1:58801298-58801317 None:intergenic 50.0%
CTCAACATGGTCTCCTCTGT+AGG + chr7_1:58801493-58801512 Msa1026610:CDS 50.0%
AGCTGAAGCTTCTCCTACAG+AGG - chr7_1:58801509-58801528 None:intergenic 50.0%
!! CATGTCAAAGTGTCGAGCTC+TGG + chr7_1:58801540-58801559 Msa1026610:CDS 50.0%
GTTCCATACCGGCGTAAATC+AGG + chr7_1:58801601-58801620 Msa1026610:CDS 50.0%
TTCCCTGATTTACGCCGGTA+TGG - chr7_1:58801607-58801626 None:intergenic 50.0%
CCGAAAATGGCCTCCTGATT+CGG - chr7_1:58801648-58801667 None:intergenic 50.0%
!! CCGAATCAGGAGGCCATTTT+CGG + chr7_1:58801645-58801664 Msa1026610:CDS 50.0%
GGACCCTATTTACGAGAGCT+GGG - chr7_1:58802115-58802134 None:intergenic 50.0%
TGGACCCTATTTACGAGAGC+TGG - chr7_1:58802116-58802135 None:intergenic 50.0%
GCAGGATAAGTGGAAGACCT+TGG + chr7_1:58802434-58802453 Msa1026610:intron 50.0%
ATCTCTCCTCAGCAAAGGAG+AGG + chr7_1:58802471-58802490 Msa1026610:CDS 50.0%
TCGAGAAGCTCTTGAGGAAC+AGG - chr7_1:58802501-58802520 None:intergenic 50.0%
ACTCTGTCGAGAAGCTCTTG+AGG - chr7_1:58802507-58802526 None:intergenic 50.0%
! GCTGACAGGTTCTGATCTGG+GGG + chr7_1:58797998-58798017 Msa1026610:intron 55.0%
CGGAAATGGCCCTCCAATGA+AGG - chr7_1:58799195-58799214 None:intergenic 55.0%
GGCACGAATCATGGTACAGG+CGG + chr7_1:58799786-58799805 Msa1026610:intron 55.0%
GGTACAGGCGGAACAATGCA+TGG + chr7_1:58799798-58799817 Msa1026610:intron 55.0%
CCGTTACAACCCTTGGACTC+AGG - chr7_1:58799956-58799975 None:intergenic 55.0%
CTTGGAGACGAACTGCACGT+AGG + chr7_1:58800827-58800846 Msa1026610:CDS 55.0%
GATTCGGCGCTGTCCAAAGT+AGG - chr7_1:58801632-58801651 None:intergenic 55.0%
! ACTTTGGACAGCGCCGAATC+AGG + chr7_1:58801632-58801651 Msa1026610:CDS 55.0%
GGTTCTCCTCTCCTTTGCTG+AGG - chr7_1:58802480-58802499 None:intergenic 55.0%
!! GGGAGCGTCATCGAAACTCG+AGG + chr7_1:58798018-58798037 Msa1026610:five_prime_UTR 60.0%
CATTGGAGGGCCATTTCCGC+AGG + chr7_1:58799196-58799215 Msa1026610:CDS 60.0%
! TTGGACAGCGCCGAATCAGG+AGG + chr7_1:58801635-58801654 Msa1026610:CDS 60.0%
GCACTCACGCAACTGCCGAT+TGG - chr7_1:58802184-58802203 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 58797154 58802971 58797154 ID=Msa1026610;Name=Msa1026610
chr7_1 mRNA 58797154 58802971 58797154 ID=Msa1026610-mRNA-1;Parent=Msa1026610;Name=Msa1026610-mRNA-1;_AED=0.17;_eAED=0.17;_QI=477|0.9|0.81|1|0.9|0.81|11|384|613
chr7_1 exon 58797154 58797540 58797154 ID=Msa1026610-mRNA-1:exon:11732;Parent=Msa1026610-mRNA-1
chr7_1 exon 58798006 58798167 58798006 ID=Msa1026610-mRNA-1:exon:11733;Parent=Msa1026610-mRNA-1
chr7_1 exon 58798419 58798699 58798419 ID=Msa1026610-mRNA-1:exon:11734;Parent=Msa1026610-mRNA-1
chr7_1 exon 58798996 58799378 58798996 ID=Msa1026610-mRNA-1:exon:11735;Parent=Msa1026610-mRNA-1
chr7_1 exon 58799631 58799779 58799631 ID=Msa1026610-mRNA-1:exon:11736;Parent=Msa1026610-mRNA-1
chr7_1 exon 58799866 58799974 58799866 ID=Msa1026610-mRNA-1:exon:11737;Parent=Msa1026610-mRNA-1
chr7_1 exon 58800218 58800297 58800218 ID=Msa1026610-mRNA-1:exon:11738;Parent=Msa1026610-mRNA-1
chr7_1 exon 58800797 58801032 58800797 ID=Msa1026610-mRNA-1:exon:11739;Parent=Msa1026610-mRNA-1
chr7_1 exon 58801402 58801719 58801402 ID=Msa1026610-mRNA-1:exon:11740;Parent=Msa1026610-mRNA-1
chr7_1 exon 58801790 58801853 58801790 ID=Msa1026610-mRNA-1:exon:11741;Parent=Msa1026610-mRNA-1
chr7_1 exon 58802438 58802971 58802438 ID=Msa1026610-mRNA-1:exon:11742;Parent=Msa1026610-mRNA-1
chr7_1 five_prime_UTR 58797154 58797540 58797154 ID=Msa1026610-mRNA-1:five_prime_utr;Parent=Msa1026610-mRNA-1
chr7_1 five_prime_UTR 58798006 58798095 58798006 ID=Msa1026610-mRNA-1:five_prime_utr;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58798096 58798167 58798096 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58798419 58798699 58798419 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58798996 58799378 58798996 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58799631 58799779 58799631 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58799866 58799974 58799866 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58800218 58800297 58800218 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58800797 58801032 58800797 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58801402 58801719 58801402 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58801790 58801853 58801790 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 CDS 58802438 58802587 58802438 ID=Msa1026610-mRNA-1:cds;Parent=Msa1026610-mRNA-1
chr7_1 three_prime_UTR 58802588 58802971 58802588 ID=Msa1026610-mRNA-1:three_prime_utr;Parent=Msa1026610-mRNA-1
Gene Sequence

>Msa1026610

ATGATTATGCAGAAGAGGTTGGATTACAGTTTTAATGGCTATCAAGTTCCTAGAGCTTCAAGATCTCCTAGGGGGAGGGGTACAATCAGGAAGAAACCCGACAGCAATCAGATACAAGCATTTGATATTTTGGCTAGTGTAGCGGGCAACCTTTTGCAGAAGACTCAGAGTTCCGTTCCTGATAATGCTGCTTCTGCGAAAGATCCTCTCGCTTTTTCTGGTATTAACATAAAGGATAACAAACAAGAGAATCAAGTAGGATCGTTTAAGGAGGAGCAATTTGAGAATGGAACTTGCAGTGAAGTTGTCTCTGGATGTGTCCCTAGTTTGCAAGGGAAACATGAAAATCAAAGAGTCACTGGTGATTCATCATTTCATGACAATCATCTTGAAGGGCAAGGACAGAATGTCATCGAGAGGGAAGATGAACGTGTGAAATTGAGAAGTACAAATGAGAAGACTATTCGCATCAAAAACCGATCTGATGGATTTATAGAACCAAGCCAAAGAGTATCAAAAGATTGCAGTGCAGAAAATCATGTGGAGAAACCTTCATTGGAGGGCCATTTCCGCAGGAATCTTGATTCTTTACCGAATGGTTCCGGTACTAGGAAATTACTTAATAGAGATGATGACGAAAACTTTGTTAGGTCCACTGAACTGAACTCAAAGAATAAGATACCTGACCCACCACCAGATACAATAAAGGTTAAGGATGCAAGTCCTTTCGTGAATGATGAGAACAATAGCGGGGACAATTCTGTGCTTGTAAATTCAGAAATGATGTATCCATTTAAGAAAAGAAAGTTTTTCTATCAAACCTCATCGTCTACGTCTGATAGTTGGTCTCACTGTCAAGGCACAGTTGATTCTTCTTGTACAAGGGCTTGTTTTTTCGTTTTGGCTCAACGATCCAAACTATCATTTGCAGTAATTGAAGAATCATCTTCTATAGCTGATGAAGAAGTTCATCCTGAGTCCAAGGGTTGTAACGTGAAGCTTAGCATAAAATCCTTTAAAGTCCCAGAGCTTTTTATTGATATCCCTGAAACTGCAACTATTGGTTCGCTGAAGAGGACAGTAATGGAGGCCGTGACAACTATACTTGGAGACGAACTGCACGTAGGCATCCTTCTTCAAGGGAAGAAGATTAGAGATGACAGTAAAACTTTGATCCAGACCGGGATATCTCAAGATGACAAACGTCATAGGTTAGGGTTCATGTTGGAGCCGAGACATAATCGAATTTCATCTTCATACAATGAAGACCCTTGTTTCCTAACCACTGGTTCACGACCAAAACTTTCTAGGCAATCAACATCTTTAATGTTACAACAAGGAACATATAATGTATCTCGGGAACGTTCTACGGTCAAAATTGAAAATTGTGCTGAAGGTGATCTCAACATGGTCTCCTCTGTAGGAGAAGCTTCAGCTAACAACAATAACATGTCAAAGTGTCGAGCTCTGGTCACAGTTCCTGCCATTAACATGGATGCATTAGCTGTGGTTCCATACCGGCGTAAATCAGGGAATTCCTACTTTGGACAGCGCCGAATCAGGAGGCCATTTTCGGTTCTAGAAGTAGAAGCATTGGTTCAGGCAGTTGAAAAACTAGGAACCGGAAGGTGGCGTGATGTCAAACAACGTGCTTTTGACCATGCAAAGCATCGAACTTATGTCGATTTGAAGGATAAGTGGAAGACCTTGGTTCACACAGCAAGAATCTCTCCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAAGAGCTTCTCGACAGAGTCTTATCTGCTCATGCCTATTGGTCTCAACAACAATGCAAGCATCAATTTAAATCAATGTGA
Protein sequence

>Msa1026610

MIMQKRLDYSFNGYQVPRASRSPRGRGTIRKKPDSNQIQAFDILASVAGNLLQKTQSSVPDNAASAKDPLAFSGINIKDNKQENQVGSFKEEQFENGTCSEVVSGCVPSLQGKHENQRVTGDSSFHDNHLEGQGQNVIEREDERVKLRSTNEKTIRIKNRSDGFIEPSQRVSKDCSAENHVEKPSLEGHFRRNLDSLPNGSGTRKLLNRDDDENFVRSTELNSKNKIPDPPPDTIKVKDASPFVNDENNSGDNSVLVNSEMMYPFKKRKFFYQTSSSTSDSWSHCQGTVDSSCTRACFFVLAQRSKLSFAVIEESSSIADEEVHPESKGCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTTILGDELHVGILLQGKKIRDDSKTLIQTGISQDDKRHRLGFMLEPRHNRISSSYNEDPCFLTTGSRPKLSRQSTSLMLQQGTYNVSRERSTVKIENCAEGDLNMVSSVGEASANNNNMSKCRALVTVPAINMDALAVVPYRRKSGNSYFGQRRIRRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFDHAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLSAHAYWSQQQCKHQFKSM*