AlfalfaGEDB | Msa0959080

M. sativa cultivar zhongmu-4 / Msa0959080

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0010190 GO:0016043 GO:0017004 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840
PFAM: PF11152.11

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959080	XP_039682757.1	72.603	292	22	3	1	234	21	312	2.12e-128	375

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959080	sp\|Q9FJ81\|CCB2_ARATH	46.038	265	77	6	27	234	20	275	7.68e-69	215

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959080	A0A396HHQ4	72.603	292	22	3	1	234	21	312	1.01e-128	375

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001460	Msa0959080	0.809711	1.653236e-50	-8.615850e-47
Msa0003470	Msa0959080	0.824657	7.168169e-54	-8.615850e-47
Msa0008850	Msa0959080	0.805876	1.079946e-49	-8.615850e-47
Msa0017120	Msa0959080	0.804518	2.078397e-49	-8.615850e-47
Msa0036580	Msa0959080	-0.805437	1.335320e-49	-8.615850e-47
Msa0065390	Msa0959080	0.801386	9.228158e-49	-8.615850e-47
Msa0068410	Msa0959080	0.810896	9.176295e-51	-8.615850e-47
Msa0091480	Msa0959080	0.811354	7.302617e-51	-8.615850e-47
Msa0094420	Msa0959080	0.822326	2.514886e-53	-8.615850e-47
Msa0103060	Msa0959080	0.807112	5.926138e-50	-8.615850e-47
Msa0605620	Msa0959080	0.817524	3.153906e-52	-8.615850e-47
Msa0607280	Msa0959080	0.817458	3.263875e-52	-8.615850e-47
Msa0607300	Msa0959080	0.808493	3.014462e-50	-8.615850e-47
Msa0645820	Msa0959080	0.811700	6.140697e-51	-8.615850e-47
Msa0651350	Msa0959080	0.807430	5.074596e-50	-8.615850e-47
Msa0667220	Msa0959080	0.800458	1.427749e-48	-8.615850e-47
Msa0672350	Msa0959080	0.803446	3.473357e-49	-8.615850e-47
Msa0681890	Msa0959080	0.811875	5.623575e-51	-8.615850e-47
Msa0685540	Msa0959080	0.806210	9.186640e-50	-8.615850e-47
Msa0690350	Msa0959080	0.819265	1.271747e-52	-8.615850e-47
Msa0690720	Msa0959080	0.814383	1.584603e-51	-8.615850e-47
Msa0704990	Msa0959080	0.807528	4.837696e-50	-8.615850e-47
Msa0705030	Msa0959080	0.807288	5.438250e-50	-8.615850e-47
Msa0707780	Msa0959080	0.811536	6.665880e-51	-8.615850e-47
Msa0709080	Msa0959080	0.820486	6.686429e-53	-8.615850e-47
Msa0709480	Msa0959080	0.804970	1.672818e-49	-8.615850e-47
Msa0717270	Msa0959080	0.803473	3.428045e-49	-8.615850e-47
Msa0730180	Msa0959080	0.837295	5.655072e-57	-8.615850e-47
Msa0739610	Msa0959080	0.802384	5.755349e-49	-8.615850e-47
Msa0770430	Msa0959080	0.816091	6.613336e-52	-8.615850e-47
Msa0790830	Msa0959080	0.812290	4.567162e-51	-8.615850e-47
Msa0799710	Msa0959080	0.824172	9.320636e-54	-8.615850e-47
Msa0800130	Msa0959080	0.825264	5.154722e-54	-8.615850e-47
Msa0802210	Msa0959080	0.815889	7.333966e-52	-8.615850e-47
Msa0837990	Msa0959080	0.812895	3.367703e-51	-8.615850e-47
Msa0127080	Msa0959080	0.807437	5.056329e-50	-8.615850e-47
Msa0135980	Msa0959080	0.817048	4.034810e-52	-8.615850e-47
Msa0139270	Msa0959080	-0.803721	3.044822e-49	-8.615850e-47
Msa0146470	Msa0959080	0.828810	7.307467e-55	-8.615850e-47
Msa0152380	Msa0959080	0.800794	1.219231e-48	-8.615850e-47
Msa0162030	Msa0959080	0.846725	1.813073e-59	-8.615850e-47
Msa0162050	Msa0959080	0.825544	4.423111e-54	-8.615850e-47
Msa0162070	Msa0959080	0.825976	3.494988e-54	-8.615850e-47
Msa0176620	Msa0959080	-0.809115	2.219313e-50	-8.615850e-47
Msa0194570	Msa0959080	0.806811	6.863070e-50	-8.615850e-47
Msa0217470	Msa0959080	0.809772	1.603921e-50	-8.615850e-47
Msa0222070	Msa0959080	0.824304	8.677818e-54	-8.615850e-47
Msa0222120	Msa0959080	0.827172	1.811972e-54	-8.615850e-47
Msa0227490	Msa0959080	0.808352	3.231478e-50	-8.615850e-47
Msa0227500	Msa0959080	0.817244	3.646246e-52	-8.615850e-47
Msa0236330	Msa0959080	0.807959	3.918388e-50	-8.615850e-47
Msa0380430	Msa0959080	0.830613	2.661213e-55	-8.615850e-47
Msa0382560	Msa0959080	0.812240	4.683262e-51	-8.615850e-47
Msa0387790	Msa0959080	0.801374	9.279383e-49	-8.615850e-47
Msa0413180	Msa0959080	0.814740	1.320948e-51	-8.615850e-47
Msa0417630	Msa0959080	0.826647	2.418579e-54	-8.615850e-47
Msa0423110	Msa0959080	0.811077	8.385855e-51	-8.615850e-47
Msa0458790	Msa0959080	0.817260	3.616114e-52	-8.615850e-47
Msa0259330	Msa0959080	0.814295	1.657296e-51	-8.615850e-47
Msa0263620	Msa0959080	0.824512	7.753773e-54	-8.615850e-47
Msa0284780	Msa0959080	0.818442	1.956047e-52	-8.615850e-47
Msa0304870	Msa0959080	0.813804	2.125918e-51	-8.615850e-47
Msa0314790	Msa0959080	0.807628	4.606292e-50	-8.615850e-47
Msa0317260	Msa0959080	0.806427	8.270912e-50	-8.615850e-47
Msa0320540	Msa0959080	0.824874	6.373066e-54	-8.615850e-47
Msa0341260	Msa0959080	0.811412	7.093223e-51	-8.615850e-47
Msa0344070	Msa0959080	0.812122	4.968595e-51	-8.615850e-47
Msa0500510	Msa0959080	0.813646	2.303364e-51	-8.615850e-47
Msa0511890	Msa0959080	0.800922	1.148338e-48	-8.615850e-47
Msa0518160	Msa0959080	0.801403	9.152371e-49	-8.615850e-47
Msa0524050	Msa0959080	0.813895	2.030287e-51	-8.615850e-47
Msa0546380	Msa0959080	0.802111	6.550768e-49	-8.615850e-47
Msa0546740	Msa0959080	0.816406	5.622582e-52	-8.615850e-47
Msa0550720	Msa0959080	0.805898	1.068648e-49	-8.615850e-47
Msa0553520	Msa0959080	0.812010	5.257945e-51	-8.615850e-47
Msa0576420	Msa0959080	0.832592	8.655722e-56	-8.615850e-47
Msa0583930	Msa0959080	0.803574	3.266991e-49	-8.615850e-47
Msa0595780	Msa0959080	0.817487	3.215630e-52	-8.615850e-47
Msa0848360	Msa0959080	0.819515	1.115325e-52	-8.615850e-47
Msa0851740	Msa0959080	0.801414	9.107367e-49	-8.615850e-47
Msa0855020	Msa0959080	0.802241	6.159627e-49	-8.615850e-47
Msa0900320	Msa0959080	0.832540	8.915868e-56	-8.615850e-47
Msa0925160	Msa0959080	0.823439	1.384511e-53	-8.615850e-47
Msa0925730	Msa0959080	0.813211	2.871371e-51	-8.615850e-47
Msa0938970	Msa0959080	0.800474	1.417034e-48	-8.615850e-47
Msa0955260	Msa0959080	0.822987	1.765179e-53	-8.615850e-47
Msa0959080	Msa0965960	0.832646	8.392943e-56	-8.615850e-47
Msa0959080	Msa0972730	0.828441	8.977358e-55	-8.615850e-47
Msa0959080	Msa0990520	0.807404	5.139653e-50	-8.615850e-47
Msa0959080	Msa1016110	0.835581	1.544248e-56	-8.615850e-47
Msa0959080	Msa1024140	0.803072	4.151152e-49	-8.615850e-47
Msa0959080	Msa1027790	0.804803	1.812451e-49	-8.615850e-47
Msa0959080	Msa1072080	0.802165	6.384250e-49	-8.615850e-47
Msa0959080	Msa1077940	-0.800223	1.594181e-48	-8.615850e-47
Msa0959080	Msa1111670	0.818899	1.540218e-52	-8.615850e-47
Msa0959080	Msa1112610	0.810365	1.195376e-50	-8.615850e-47
Msa0959080	Msa1140010	0.804568	2.029059e-49	-8.615850e-47
Msa0959080	Msa1149760	0.832875	7.362951e-56	-8.615850e-47
Msa0959080	Msa1166180	0.823152	1.615720e-53	-8.615850e-47
Msa0959080	Msa1166280	0.821918	3.126742e-53	-8.615850e-47
Msa0959080	Msa1171340	0.800089	1.697270e-48	-8.615850e-47
Msa0959080	Msa1178970	0.813132	2.988238e-51	-8.615850e-47
Msa0959080	Msa1183390	0.813586	2.374857e-51	-8.615850e-47
Msa0959080	Msa1196600	0.819683	1.021026e-52	-8.615850e-47
Msa0959080	Msa1200920	0.812346	4.440999e-51	-8.615850e-47
Msa0959080	Msa1214900	0.853226	2.749318e-61	-8.615850e-47
Msa0959080	Msa1222390	0.814291	1.660561e-51	-8.615850e-47
Msa0959080	Msa1226600	0.800268	1.560575e-48	-8.615850e-47
Msa0959080	Msa1238480	0.805828	1.105679e-49	-8.615850e-47
Msa0959080	Msa1263590	0.801189	1.012567e-48	-8.615850e-47
Msa0959080	Msa1263670	0.803219	3.869608e-49	-8.615850e-47
Msa0959080	Msa1268370	0.816252	6.085388e-52	-8.615850e-47
Msa0959080	Msa1271510	0.807884	4.064051e-50	-8.615850e-47
Msa0959080	Msa1276080	0.802708	4.934302e-49	-8.615850e-47
Msa0959080	Msa1309360	0.810679	1.022275e-50	-8.615850e-47
Msa0959080	Msa1339250	0.817190	3.749442e-52	-8.615850e-47
Msa0959080	Msa1349360	0.828115	1.075704e-54	-8.615850e-47
Msa0959080	Msa1352290	0.840420	8.789518e-58	-8.615850e-47
Msa0959080	Msa1352820	0.800468	1.420956e-48	-8.615850e-47
Msa0959080	Msa1354040	0.811464	6.912154e-51	-8.615850e-47
Msa0959080	Msa1367600	0.839087	1.954179e-57	-8.615850e-47
Msa0959080	Msa1367940	0.813664	2.282622e-51	-8.615850e-47
Msa0959080	Msa1376640	0.800884	1.168838e-48	-8.615850e-47
Msa0959080	Msa1395690	-0.804666	1.935880e-49	-8.615850e-47
Msa0959080	Msa1397540	0.810793	9.658733e-51	-8.615850e-47
Msa0959080	Msa1406230	0.819003	1.459230e-52	-8.615850e-47
Msa0959080	Msa1406550	0.800336	1.511856e-48	-8.615850e-47
Msa0959080	Msa1410170	0.813740	2.196336e-51	-8.615850e-47
Msa0959080	Msa1428420	0.823272	1.514834e-53	-8.615850e-47
Msa0959080	Msa1429830	0.814122	1.808944e-51	-8.615850e-47
Msa0959080	Msa1435910	0.842787	2.088597e-58	-8.615850e-47
Msa0959080	Msa1458920	0.800849	1.188389e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959080	MtrunA17_Chr6g0477031	72.603	292	22	3	1	234	21	312	1.95e-132	375

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0959080	AT5G52110.1	46.038	265	77	6	27	234	20	275	7.81e-70	215
Msa0959080	AT5G52110.2	46.038	265	77	6	27	234	20	275	7.81e-70	215

Find 96 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTATTTGAACCACAAATTTC+TGG	0.178305	6_3:-75446914	None:intergenic
AGATGGATTGGTTATGCTTT+TGG	0.224018	6_3:+75442608	Msa0959080:CDS
CCTGACATGAGTGACGTATT+TGG	0.271753	6_3:+75447428	Msa0959080:three_prime_UTR
ATGATCATATCTTTATCTTT+TGG	0.284154	6_3:+75447019	Msa0959080:three_prime_UTR
TACAAATGCATGCATTTATA+TGG	0.303752	6_3:+75447348	Msa0959080:three_prime_UTR
GGTTGAGTTGGTGGAATTGT+TGG	0.306640	6_3:-75442400	None:intergenic
TCGATAGAAACTTGTAATAT+TGG	0.317636	6_3:-75445571	None:intergenic
GGAGTAAAGATGAGCGTTAA+AGG	0.335560	6_3:+75447177	Msa0959080:three_prime_UTR
ATGAATCTTACTTACCTAGA+TGG	0.344186	6_3:+75442591	Msa0959080:CDS
TAAAGGGACTCGTTCTCTTC+TGG	0.348385	6_3:+75445543	Msa0959080:CDS
TTAACCATGTTATCTTTGTT+TGG	0.349315	6_3:+75447156	Msa0959080:three_prime_UTR
TATGTAGAGAACAGAGGTTT+TGG	0.349833	6_3:+75443910	Msa0959080:intron
CAACAATATCTTTGAAACCT+TGG	0.361248	6_3:+75442292	Msa0959080:CDS
TTCAGGAACTTGTACCTAAA+GGG	0.377417	6_3:+75445527	Msa0959080:intron
TCTGTTCTTCGCTTCACATT+GGG	0.380169	6_3:+75442441	Msa0959080:CDS
ATATATGCTTAAATTGTGTA+TGG	0.380720	6_3:+75447131	Msa0959080:three_prime_UTR
GTTGAGTTGGTGGAATTGTT+GGG	0.381196	6_3:-75442399	None:intergenic
AGTATATCAGAATGATATAA+TGG	0.391232	6_3:+75446565	Msa0959080:three_prime_UTR
CTCTGTTCTTCGCTTCACAT+TGG	0.396058	6_3:+75442440	Msa0959080:CDS
AGAAGAGAACGAGTCCCTTT+AGG	0.399029	6_3:-75445541	None:intergenic
TACCTCTACATGTGCATGTT+AGG	0.402435	6_3:+75447080	Msa0959080:three_prime_UTR
AACCACAAATTTCTGGATCA+AGG	0.404189	6_3:-75446907	None:intergenic
GCTATTACCTCTAAGCTTGT+TGG	0.408859	6_3:-75445695	None:intergenic
AATATTTGTTGCGCTTCATC+TGG	0.410067	6_3:-75444643	None:intergenic
CTGTTGTTGGGTTGAGTTGG+TGG	0.410373	6_3:-75442409	None:intergenic
CAGAGAGATTGAGCTGTTGT+TGG	0.413325	6_3:-75442422	None:intergenic
TAAAGGATTATAATGAAGTC+AGG	0.420527	6_3:+75447194	Msa0959080:three_prime_UTR
GTTGGCAACAGCTGCAATCC+AGG	0.421141	6_3:-75445677	None:intergenic
GAGCTGTTGTTGGGTTGAGT+TGG	0.439886	6_3:-75442412	None:intergenic
TATAAAATTGAATTGAAGCT+AGG	0.440009	6_3:-75446470	None:intergenic
AACCTTGATCCAGAAATTTG+TGG	0.443250	6_3:+75446905	Msa0959080:three_prime_UTR
ACCAGTTGGATTTATTCTGC+TGG	0.446677	6_3:+75445615	Msa0959080:CDS
TCCCACAATTCCATCAGAAC+TGG	0.456097	6_3:-75447380	Msa0959090:CDS
GCTGTTGCCAACAAGCTTAG+AGG	0.457265	6_3:+75445688	Msa0959080:CDS
GGTATAGTTGTTTGTTCCAC+CGG	0.459040	6_3:-75444622	None:intergenic
GTTTAGTTTGATGCTTCAAA+AGG	0.459936	6_3:-75446949	None:intergenic
TTAGCATTAAAGACAGAGCC+TGG	0.460642	6_3:+75445659	Msa0959080:CDS
GGACGGTCTGAAGGAAGATC+TGG	0.460993	6_3:+75444687	Msa0959080:CDS
ACCAGTTCTGATGGAATTGT+GGG	0.463118	6_3:+75447379	Msa0959080:three_prime_UTR
AATTCTCTTCAAGGCATAAT+CGG	0.468614	6_3:-75446759	None:intergenic
CTTGAAAAGCATTTCCCGCT+AGG	0.470773	6_3:+75447320	Msa0959080:three_prime_UTR
TTTCAGGAACTTGTACCTAA+AGG	0.472526	6_3:+75445526	Msa0959080:intron
TCTTACTTACCTAGATGGAT+TGG	0.475217	6_3:+75442596	Msa0959080:CDS
GTCTGAAGGAAGATCTGGCT+TGG	0.484196	6_3:+75444692	Msa0959080:CDS
GAGGGACGTAATTCTCTTCA+AGG	0.484535	6_3:-75446768	None:intergenic
TTGAGAAATTTACCAAGGTA+AGG	0.490938	6_3:-75443965	None:intergenic
CCAAATACGTCACTCATGTC+AGG	0.496616	6_3:-75447428	Msa0959090:CDS
AAGGTGCAGTATCTCATGTC+AGG	0.499836	6_3:-75446659	None:intergenic
TGTTTGATTTCAGGTATACC+TGG	0.505101	6_3:+75442563	Msa0959080:intron
ACCAGCAGAATAAATCCAAC+TGG	0.505118	6_3:-75445616	None:intergenic
AAAGCATAACCAATCCATCT+AGG	0.507839	6_3:-75442605	None:intergenic
AACCAGTTCTGATGGAATTG+TGG	0.510124	6_3:+75447378	Msa0959080:three_prime_UTR
TTACCTTGGTAAATTTCTCA+AGG	0.516569	6_3:+75443967	Msa0959080:CDS
ATATTGTTAGGGTGCTCAAC+CGG	0.520224	6_3:+75444603	Msa0959080:intron
CAGAAACTTTCTACACCTCA+AGG	0.526611	6_3:-75446616	None:intergenic
TTTATAAAAGTAGATTGAAG+TGG	0.530625	6_3:+75446487	Msa0959080:three_prime_UTR
AGAGAGATTGAGCTGTTGTT+GGG	0.530917	6_3:-75442421	None:intergenic
GAGTTGGTGGAATTGTTGGG+TGG	0.538336	6_3:-75442396	None:intergenic
CATGTGACATACCGCAGCTA+TGG	0.538449	6_3:-75444746	None:intergenic
ATGCATGCATTTATATGGAC+AGG	0.538512	6_3:+75447353	Msa0959080:three_prime_UTR
AGATATAGCGGACGGTCTGA+AGG	0.538525	6_3:+75444678	Msa0959080:CDS
TTCTCACAACTTTCCTCCGA+GGG	0.541210	6_3:-75446786	None:intergenic
GACAGGACAACCAGTTCTGA+TGG	0.542232	6_3:+75447370	Msa0959080:three_prime_UTR
GCAGTATCTCATGTCAGGAT+TGG	0.545120	6_3:-75446654	None:intergenic
TCAATTGTACTGCCTTACCT+TGG	0.552367	6_3:+75443953	Msa0959080:CDS
TTGAAGAGAATTACGTCCCT+CGG	0.562265	6_3:+75446770	Msa0959080:three_prime_UTR
AATGCTAAATGCATATCTCA+TGG	0.577761	6_3:-75445644	None:intergenic
GTAAGGCAGTACAATTGAGA+AGG	0.580325	6_3:-75443948	None:intergenic
TGGAATCATCTACACTACTC+TGG	0.581452	6_3:+75447251	Msa0959080:three_prime_UTR
TACTCCAAACAAAGATAACA+TGG	0.587584	6_3:-75447160	None:intergenic
TTGTTGTTACGAGGAATCCA+AGG	0.589798	6_3:-75442309	None:intergenic
ATTGTAGTCGATGAGCAAGT+TGG	0.590518	6_3:-75447274	None:intergenic
ATCCTAACATGCACATGTAG+AGG	0.591932	6_3:-75447082	None:intergenic
GATGATAAGGTTCTAACGAA+AGG	0.592302	6_3:+75446528	Msa0959080:three_prime_UTR
TTGTTATATGTAGAGAACAG+AGG	0.594161	6_3:+75443904	Msa0959080:intron
AAAACAACGTTGTTGTTACG+AGG	0.609688	6_3:-75442318	None:intergenic
GAGGTGTAGAAAGTTTCTGA+TGG	0.613131	6_3:+75446620	Msa0959080:three_prime_UTR
GCATTTGTATCTGACCTAGC+GGG	0.613689	6_3:-75447334	None:intergenic
AAAGGATTATAATGAAGTCA+GGG	0.616521	6_3:+75447195	Msa0959080:three_prime_UTR
TCAGAATTTATAAAACCTTG+AGG	0.618883	6_3:+75446601	Msa0959080:three_prime_UTR
TAATACAAACGCCATAGCTG+CGG	0.626421	6_3:+75444735	Msa0959080:CDS
TAGTAGCACATCATGTCATG+TGG	0.627443	6_3:-75447057	None:intergenic
TTTCTCACAACTTTCCTCCG+AGG	0.628696	6_3:-75446787	None:intergenic
TCATGCATTCTTGACCTGAG+TGG	0.631776	6_3:+75447231	Msa0959080:three_prime_UTR
TTGTTAGGGTGCTCAACCGG+TGG	0.631914	6_3:+75444606	Msa0959080:intron
AGGTTTCAAAGATATTGTTG+TGG	0.632815	6_3:-75442289	None:intergenic
TTACCTTGAGAAATTTACCA+AGG	0.635163	6_3:-75443970	None:intergenic
ATGTCATGTGGAAACAAATG+AGG	0.637698	6_3:-75447045	None:intergenic
TAGTGTAGATGATTCCACTC+AGG	0.644522	6_3:-75447245	None:intergenic
TGCATTTGTATCTGACCTAG+CGG	0.647366	6_3:-75447335	None:intergenic
TGTCATGTCAACAGATATAG+CGG	0.651701	6_3:+75444666	Msa0959080:CDS
AAGTAAGATTCATCAAAACC+AGG	0.662494	6_3:-75442581	None:intergenic
AGCTAGGCTTATAAACACGA+AGG	0.676220	6_3:-75446454	None:intergenic
AATACGTCACTCATGTCAGG+TGG	0.680177	6_3:-75447425	Msa0959090:CDS
ATGTCAACAGATATAGCGGA+CGG	0.684511	6_3:+75444670	Msa0959080:CDS
AAGAGAATTACGTCCCTCGG+AGG	0.705425	6_3:+75446773	Msa0959080:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATTTAATTGAATAAGAAA+GGG	-	chr6_3:75442714-75442733	None:intergenic	10.0%
!!!	TCATTTTTTCAAATTATTAT+CGG	-	chr6_3:75444298-75444317	None:intergenic	10.0%
!!	TATAATATTAATACGTAATA+TGG	+	chr6_3:75445117-75445136	Msa0959080:intron	10.0%
!!	AATTATTGTATAGTTTATTA+TGG	-	chr6_3:75445354-75445373	None:intergenic	10.0%
!!	ATAAAATAATATGTAACAAT+CGG	-	chr6_3:75445782-75445801	None:intergenic	10.0%
!!!	GTTTTTTTATTGTATTCATT+TGG	+	chr6_3:75442527-75442546	Msa0959080:intron	15.0%
!!	CATATTTAATTGAATAAGAA+AGG	-	chr6_3:75442715-75442734	None:intergenic	15.0%
!!!	TTTTTTTTTTTTGTTTGGTT+CGG	+	chr6_3:75443094-75443113	Msa0959080:intron	15.0%
!!	AAATGTTTACAATAATTTGA+TGG	+	chr6_3:75443175-75443194	Msa0959080:intron	15.0%
!!!	AATTGATATTTTCATTTCTA+AGG	+	chr6_3:75443756-75443775	Msa0959080:intron	15.0%
!!	ACTTGTAAAAAAACTAATTT+GGG	-	chr6_3:75444491-75444510	None:intergenic	15.0%
!!!	TTAATTTTCCTTTTAGTATA+CGG	+	chr6_3:75444526-75444545	Msa0959080:intron	15.0%
!!	TAAAATAATATGTAACAATC+GGG	-	chr6_3:75445781-75445800	None:intergenic	15.0%
!!!	CTTATCTTAAATCATTTTCT+TGG	+	chr6_3:75442638-75442657	Msa0959080:CDS	20.0%
!!	ATTTAACAAACAGTTTAGTT+TGG	-	chr6_3:75442874-75442893	None:intergenic	20.0%
!!!	TTTCTCTATATTCTTTTCAA+TGG	-	chr6_3:75442977-75442996	None:intergenic	20.0%
!!!	AACTAAAATTCGATTTTGTT+TGG	-	chr6_3:75443000-75443019	None:intergenic	20.0%
!!!	TTTTTTTTTTTGTTTGGTTC+GGG	+	chr6_3:75443095-75443114	Msa0959080:intron	20.0%
!!	GAAAGAAATGTATACAATAT+TGG	-	chr6_3:75444002-75444021	None:intergenic	20.0%
!!	AAAAAATATCACAACTGATA+TGG	-	chr6_3:75444210-75444229	None:intergenic	20.0%
!!	GACTTGTAAAAAAACTAATT+TGG	-	chr6_3:75444492-75444511	None:intergenic	20.0%
!!	GTATACTAAAAGGAAAATTA+AGG	-	chr6_3:75444527-75444546	None:intergenic	20.0%
!!	TATTAATTTAAACAAACCCA+TGG	+	chr6_3:75444798-75444817	Msa0959080:intron	20.0%
!!	AACTAGAAAAGAAGAAAAAA+TGG	+	chr6_3:75444846-75444865	Msa0959080:intron	20.0%
!!	ATTGAAATTGTTCGAAAATA+AGG	-	chr6_3:75444916-75444935	None:intergenic	20.0%
!!	TTAACATAATTTCCAAAAAC+TGG	-	chr6_3:75445297-75445316	None:intergenic	20.0%
!!!	AAAAAAATCAGTTTTTAGTG+TGG	+	chr6_3:75445905-75445924	Msa0959080:intron	20.0%
!!	ATAAGAGATAAGATTGAAAA+AGG	+	chr6_3:75445931-75445950	Msa0959080:intron	20.0%
!!	TAAGAGATAAGATTGAAAAA+GGG	+	chr6_3:75445932-75445951	Msa0959080:intron	20.0%
!!	CATTTGTGTTTGTTTATATT+AGG	-	chr6_3:75445964-75445983	None:intergenic	20.0%
!!	ATTTATCTGTTTCAAATTGA+TGG	+	chr6_3:75446071-75446090	Msa0959080:intron	20.0%
!!	AAATGTATCTCAAAATTTCA+TGG	-	chr6_3:75446194-75446213	None:intergenic	20.0%
!!!	AAATTTTGAGATACATTTAG+AGG	+	chr6_3:75446196-75446215	Msa0959080:intron	20.0%
!!	TATAAAATTGAATTGAAGCT+AGG	-	chr6_3:75446473-75446492	None:intergenic	20.0%
!!	TTTATAAAAGTAGATTGAAG+TGG	+	chr6_3:75446487-75446506	Msa0959080:three_prime_UTR	20.0%
!!	AGTATATCAGAATGATATAA+TGG	+	chr6_3:75446565-75446584	Msa0959080:three_prime_UTR	20.0%
!!	TTCCAATCATGATATAAAAA+AGG	-	chr6_3:75446681-75446700	None:intergenic	20.0%
!!	AAGATACAATTAAGAAAAAG+TGG	+	chr6_3:75446712-75446731	Msa0959080:three_prime_UTR	20.0%
!!!	ATTAGAAAGTGAATTTTTGA+AGG	+	chr6_3:75446845-75446864	Msa0959080:three_prime_UTR	20.0%
!!	GAAATCAATATACAAAAACA+TGG	-	chr6_3:75446983-75447002	None:intergenic	20.0%
!!!	ATGATCATATCTTTATCTTT+TGG	+	chr6_3:75447019-75447038	Msa0959080:three_prime_UTR	20.0%
!!	ATATATGCTTAAATTGTGTA+TGG	+	chr6_3:75447131-75447150	Msa0959080:three_prime_UTR	20.0%
!!	TAATGTTGTTGTAGATTTTG+TGG	-	chr6_3:75442358-75442377	None:intergenic	25.0%
!!!	TGTGTTTTTTGTTTGATTTC+AGG	+	chr6_3:75442554-75442573	Msa0959080:intron	25.0%
!!	TCTAAAGTTTGACATATGAA+TGG	-	chr6_3:75442808-75442827	None:intergenic	25.0%
!	TGTCAAACTTTAGATGTATA+TGG	+	chr6_3:75442814-75442833	Msa0959080:intron	25.0%
!	GTCAAACTTTAGATGTATAT+GGG	+	chr6_3:75442815-75442834	Msa0959080:intron	25.0%
!	AGTTTCAGAATTGTTAGTAA+TGG	+	chr6_3:75443058-75443077	Msa0959080:intron	25.0%
!!!	TTTGGTTTGGTTTTTTTGTA+AGG	+	chr6_3:75443130-75443149	Msa0959080:intron	25.0%
!!!	TTTTAGAGACAAATTGTTAG+TGG	+	chr6_3:75443292-75443311	Msa0959080:intron	25.0%
!	AAATGTGTGCTATAAAGATT+AGG	+	chr6_3:75443416-75443435	Msa0959080:intron	25.0%
!!	TGCAATTTAAAACCTTGTAT+TGG	-	chr6_3:75443661-75443680	None:intergenic	25.0%
!!	ATTTTTGTTAGGGACTAATT+TGG	+	chr6_3:75443787-75443806	Msa0959080:intron	25.0%
!!	TTTTTGTTAGGGACTAATTT+GGG	+	chr6_3:75443788-75443807	Msa0959080:intron	25.0%
!!	AACCTTTATATGTTTTTCTG+TGG	+	chr6_3:75443856-75443875	Msa0959080:intron	25.0%
!	TAAGACTTGATAGATATGTT+TGG	+	chr6_3:75444048-75444067	Msa0959080:intron	25.0%
!	CTATGATTAAAGAGAAAATG+TGG	+	chr6_3:75444173-75444192	Msa0959080:intron	25.0%
!	ACATAGCTTAAAACAACTTA+TGG	+	chr6_3:75444398-75444417	Msa0959080:intron	25.0%
!	GAAAAGAAGAAAAAATGGTA+TGG	+	chr6_3:75444851-75444870	Msa0959080:intron	25.0%
!	AATTTCTTTCGATGAATCAT+TGG	-	chr6_3:75444996-75445015	None:intergenic	25.0%
!	AGGAAAAAAATTGAAAATGC+TGG	+	chr6_3:75445031-75445050	Msa0959080:intron	25.0%
!	TTAATACGTAATATGGAAGT+TGG	+	chr6_3:75445124-75445143	Msa0959080:intron	25.0%
!!!	TTTGTACAGTTTTGTCAAAT+AGG	+	chr6_3:75445154-75445173	Msa0959080:intron	25.0%
!!!	TTGTACAGTTTTGTCAAATA+GGG	+	chr6_3:75445155-75445174	Msa0959080:intron	25.0%
!!	TTGCTGTTGAAAATATGATT+AGG	-	chr6_3:75445385-75445404	None:intergenic	25.0%
!	TCGATAGAAACTTGTAATAT+TGG	-	chr6_3:75445574-75445593	None:intergenic	25.0%
!	TTTAACCAGATTAATGTAGA+AGG	-	chr6_3:75445842-75445861	None:intergenic	25.0%
!	TAGAGATAAAATAATGAAGC+AGG	-	chr6_3:75445991-75446010	None:intergenic	25.0%
!	GCATCTCAAATTTGAAAAAT+CGG	+	chr6_3:75446096-75446115	Msa0959080:intron	25.0%
!	AATTTAAACCAAATCTAGCT+TGG	+	chr6_3:75446126-75446145	Msa0959080:intron	25.0%
!	ATGAAAAATGATGCAGATTA+AGG	-	chr6_3:75446159-75446178	None:intergenic	25.0%
!	TTGCTAATATATGACGAAAA+CGG	-	chr6_3:75446340-75446359	None:intergenic	25.0%
!	TTTCGTCATATATTAGCAAA+AGG	+	chr6_3:75446341-75446360	Msa0959080:intron	25.0%
!	AAAAATTGCAGAAGTTTGAA+AGG	-	chr6_3:75446412-75446431	None:intergenic	25.0%
!	TCAGAATTTATAAAACCTTG+AGG	+	chr6_3:75446601-75446620	Msa0959080:three_prime_UTR	25.0%
!!!	CACCTTTTTTATATCATGAT+TGG	+	chr6_3:75446676-75446695	Msa0959080:three_prime_UTR	25.0%
!	ATTAAGAAAAAGTGGAATCT+AGG	+	chr6_3:75446720-75446739	Msa0959080:three_prime_UTR	25.0%
!	AGTTGTGAGAAACAAAAAAA+TGG	+	chr6_3:75446798-75446817	Msa0959080:three_prime_UTR	25.0%
!	GAAACAAAAAAATGGATATC+AGG	+	chr6_3:75446806-75446825	Msa0959080:three_prime_UTR	25.0%
!	TTATTTGAACCACAAATTTC+TGG	-	chr6_3:75446917-75446936	None:intergenic	25.0%
!	TTAACCATGTTATCTTTGTT+TGG	+	chr6_3:75447156-75447175	Msa0959080:three_prime_UTR	25.0%
!	TAAAGGATTATAATGAAGTC+AGG	+	chr6_3:75447194-75447213	Msa0959080:three_prime_UTR	25.0%
!	AAAGGATTATAATGAAGTCA+GGG	+	chr6_3:75447195-75447214	Msa0959080:three_prime_UTR	25.0%
!	TACAAATGCATGCATTTATA+TGG	+	chr6_3:75447348-75447367	Msa0959080:three_prime_UTR	25.0%
!	TTCATCTCTTCTTTTCTTTC+TGG	-	chr6_3:75442261-75442280	None:intergenic	30.0%
	AGGTTTCAAAGATATTGTTG+TGG	-	chr6_3:75442292-75442311	None:intergenic	30.0%
!!	CAACAATATCTTTGAAACCT+TGG	+	chr6_3:75442292-75442311	Msa0959080:CDS	30.0%
!	ATTTTGTGGAACATGTTTTG+GGG	-	chr6_3:75442344-75442363	None:intergenic	30.0%
!	GATTTTGTGGAACATGTTTT+GGG	-	chr6_3:75442345-75442364	None:intergenic	30.0%
!	AGATTTTGTGGAACATGTTT+TGG	-	chr6_3:75442346-75442365	None:intergenic	30.0%
	AAGTAAGATTCATCAAAACC+AGG	-	chr6_3:75442584-75442603	None:intergenic	30.0%
	ATGAATCTTACTTACCTAGA+TGG	+	chr6_3:75442591-75442610	Msa0959080:CDS	30.0%
!!	ACAAACAGTTTAGTTTGGTT+CGG	-	chr6_3:75442869-75442888	None:intergenic	30.0%
	AGTTCGAAATGCAAACAATT+CGG	-	chr6_3:75442916-75442935	None:intergenic	30.0%
	GAAACTGAACTAAAACAGTT+CGG	-	chr6_3:75443044-75443063	None:intergenic	30.0%
	TGCAAATCTCATCAATGTTA+AGG	-	chr6_3:75443690-75443709	None:intergenic	30.0%
	CCTTAAGAAATCCAACAAAA+AGG	-	chr6_3:75443732-75443751	None:intergenic	30.0%
!	CCTTTTTGTTGGATTTCTTA+AGG	+	chr6_3:75443729-75443748	Msa0959080:intron	30.0%
!	AGGTCTCAGTAATTTTTGTT+AGG	+	chr6_3:75443776-75443795	Msa0959080:intron	30.0%
!	GGTCTCAGTAATTTTTGTTA+GGG	+	chr6_3:75443777-75443796	Msa0959080:intron	30.0%
	CACCACAGAAAAACATATAA+AGG	-	chr6_3:75443861-75443880	None:intergenic	30.0%
	TTGTTATATGTAGAGAACAG+AGG	+	chr6_3:75443904-75443923	Msa0959080:intron	30.0%
	TTGAGAAATTTACCAAGGTA+AGG	-	chr6_3:75443968-75443987	None:intergenic	30.0%
	TTACCTTGGTAAATTTCTCA+AGG	+	chr6_3:75443967-75443986	Msa0959080:CDS	30.0%
	TTACCTTGAGAAATTTACCA+AGG	-	chr6_3:75443973-75443992	None:intergenic	30.0%
	CTTATTTCAATGAACTCTCT+AGG	-	chr6_3:75444245-75444264	None:intergenic	30.0%
	AATTTAAACAAACCCATGGT+TGG	+	chr6_3:75444802-75444821	Msa0959080:intron	30.0%
	TATAGAAATCAACCAACCAT+GGG	-	chr6_3:75444817-75444836	None:intergenic	30.0%
!!	GTTCAGCTCATTTTTATTCA+AGG	+	chr6_3:75444938-75444957	Msa0959080:intron	30.0%
	TTCATCGAAAGAAATTCTTC+TGG	+	chr6_3:75445000-75445019	Msa0959080:intron	30.0%
!!	AAATTCTTCTGGAACAGTTT+AGG	+	chr6_3:75445011-75445030	Msa0959080:intron	30.0%
	TGCATCTTGTGGAAAATATA+GGG	-	chr6_3:75445077-75445096	None:intergenic	30.0%
!!	TGTACAGTTTTGTCAAATAG+GGG	+	chr6_3:75445156-75445175	Msa0959080:intron	30.0%
	TTCAACCTGTTCAAATAATG+TGG	+	chr6_3:75445475-75445494	Msa0959080:intron	30.0%
	ACATTCCACATTATTTGAAC+AGG	-	chr6_3:75445483-75445502	None:intergenic	30.0%
	TGTTTCAGATTCTGAATTTC+AGG	+	chr6_3:75445510-75445529	Msa0959080:intron	30.0%
	AATGCTAAATGCATATCTCA+TGG	-	chr6_3:75445647-75445666	None:intergenic	30.0%
	TTAAGCCTTCTACATTAATC+TGG	+	chr6_3:75445834-75445853	Msa0959080:intron	30.0%
	CAAAATTTCATGGAAATTCG+TGG	-	chr6_3:75446184-75446203	None:intergenic	30.0%
	AAAGAGGATATAGTGTAACA+TGG	-	chr6_3:75446304-75446323	None:intergenic	30.0%
	TGCTAATATATGACGAAAAC+GGG	-	chr6_3:75446339-75446358	None:intergenic	30.0%
	GTTTGAAAGGTAAAAACACA+TGG	-	chr6_3:75446399-75446418	None:intergenic	30.0%
!	TATTTTCTGCAACGATGATA+AGG	+	chr6_3:75446515-75446534	Msa0959080:three_prime_UTR	30.0%
	AATTCTCTTCAAGGCATAAT+CGG	-	chr6_3:75446762-75446781	None:intergenic	30.0%
!!	GTTTAGTTTGATGCTTCAAA+AGG	-	chr6_3:75446952-75446971	None:intergenic	30.0%
	TACTCCAAACAAAGATAACA+TGG	-	chr6_3:75447163-75447182	None:intergenic	30.0%
!	AAAACAACGTTGTTGTTACG+AGG	-	chr6_3:75442321-75442340	None:intergenic	35.0%
!	TGTTTGATTTCAGGTATACC+TGG	+	chr6_3:75442563-75442582	Msa0959080:intron	35.0%
	TCTTACTTACCTAGATGGAT+TGG	+	chr6_3:75442596-75442615	Msa0959080:CDS	35.0%
	AAAGCATAACCAATCCATCT+AGG	-	chr6_3:75442608-75442627	None:intergenic	35.0%
!!!	AGATGGATTGGTTATGCTTT+TGG	+	chr6_3:75442608-75442627	Msa0959080:CDS	35.0%
	ACTTTAGATGTATATGGGCA+TGG	+	chr6_3:75442820-75442839	Msa0959080:intron	35.0%
	GAAATGCAAACAATTCGGTT+CGG	-	chr6_3:75442911-75442930	None:intergenic	35.0%
	TCTGAACCGAACTGTTATTA+TGG	+	chr6_3:75442948-75442967	Msa0959080:intron	35.0%
	CTGAACCGAACTGTTATTAT+GGG	+	chr6_3:75442949-75442968	Msa0959080:intron	35.0%
	TGGTACCCATAATAACAGTT+CGG	-	chr6_3:75442957-75442976	None:intergenic	35.0%
	TGAACTAAAACAGTTCGGTT+CGG	-	chr6_3:75443039-75443058	None:intergenic	35.0%
!!	TGTTAGTGGCTAACTTGTTA+AGG	+	chr6_3:75443306-75443325	Msa0959080:intron	35.0%
!!	GTTAGTGGCTAACTTGTTAA+GGG	+	chr6_3:75443307-75443326	Msa0959080:intron	35.0%
!!	TTAGTGGCTAACTTGTTAAG+GGG	+	chr6_3:75443308-75443327	Msa0959080:intron	35.0%
	TCGAAATAACAGTACTTGTG+TGG	-	chr6_3:75443450-75443469	None:intergenic	35.0%
	AGTCAATCGCGAAAAAATAG+CGG	-	chr6_3:75443635-75443654	None:intergenic	35.0%
!	GACGAGAAAAACCTTTTTGT+TGG	+	chr6_3:75443718-75443737	Msa0959080:intron	35.0%
!	TATGTAGAGAACAGAGGTTT+TGG	+	chr6_3:75443910-75443929	Msa0959080:intron	35.0%
!	ATGTAGAGAACAGAGGTTTT+GGG	+	chr6_3:75443911-75443930	Msa0959080:intron	35.0%
	GGAGCTTTCATAATTCAACA+AGG	+	chr6_3:75444069-75444088	Msa0959080:intron	35.0%
!	GTCAGTGTTTCATAGGTTTT+CGG	-	chr6_3:75444268-75444287	None:intergenic	35.0%
	TCTCAGATGTTGATACATGT+TGG	+	chr6_3:75444346-75444365	Msa0959080:intron	35.0%
	TTTGAGCTCCGTATACTAAA+AGG	-	chr6_3:75444537-75444556	None:intergenic	35.0%
	AGCCATGTCTGAATATTGTT+AGG	+	chr6_3:75444591-75444610	Msa0959080:intron	35.0%
	GCCATGTCTGAATATTGTTA+GGG	+	chr6_3:75444592-75444611	Msa0959080:intron	35.0%
	ACCCTAACAATATTCAGACA+TGG	-	chr6_3:75444596-75444615	None:intergenic	35.0%
!	AATATTTGTTGCGCTTCATC+TGG	-	chr6_3:75444646-75444665	None:intergenic	35.0%
	TGTCATGTCAACAGATATAG+CGG	+	chr6_3:75444666-75444685	Msa0959080:CDS	35.0%
	CTATAGAAATCAACCAACCA+TGG	-	chr6_3:75444818-75444837	None:intergenic	35.0%
	CTGCATCTTGTGGAAAATAT+AGG	-	chr6_3:75445078-75445097	None:intergenic	35.0%
!	CTATATTTTCCACAAGATGC+AGG	+	chr6_3:75445076-75445095	Msa0959080:intron	35.0%
	CGTAATATGGAAGTTGGATA+TGG	+	chr6_3:75445130-75445149	Msa0959080:intron	35.0%
!!	GTACAGTTTTGTCAAATAGG+GGG	+	chr6_3:75445157-75445176	Msa0959080:intron	35.0%
	TACGAAGTGTAGTCAAATAG+TGG	+	chr6_3:75445242-75445261	Msa0959080:intron	35.0%
!	AGCATAACTTGACCAGTTTT+TGG	+	chr6_3:75445282-75445301	Msa0959080:intron	35.0%
	TTTCAGGAACTTGTACCTAA+AGG	+	chr6_3:75445526-75445545	Msa0959080:intron	35.0%
	TTCAGGAACTTGTACCTAAA+GGG	+	chr6_3:75445527-75445546	Msa0959080:intron	35.0%
!!!	AACTGGTTTTTGTGAATCAG+TGG	-	chr6_3:75445602-75445621	None:intergenic	35.0%
!	ACTGATTCACAAAAACCAGT+TGG	+	chr6_3:75445601-75445620	Msa0959080:CDS	35.0%
	GGTAGTAAGTAACAGCTAAA+CGG	-	chr6_3:75446277-75446296	None:intergenic	35.0%
	GATATAGTGTAACATGGACT+AGG	-	chr6_3:75446298-75446317	None:intergenic	35.0%
	CACATGGTTAAAAAGACGAA+GGG	-	chr6_3:75446383-75446402	None:intergenic	35.0%
	ACACATGGTTAAAAAGACGA+AGG	-	chr6_3:75446384-75446403	None:intergenic	35.0%
!!	CTTCTGCAATTTTTGTTTGC+AGG	+	chr6_3:75446418-75446437	Msa0959080:intron	35.0%
!	GATGATAAGGTTCTAACGAA+AGG	+	chr6_3:75446528-75446547	Msa0959080:three_prime_UTR	35.0%
	AACCTTGATCCAGAAATTTG+TGG	+	chr6_3:75446905-75446924	Msa0959080:three_prime_UTR	35.0%
!	AACCACAAATTTCTGGATCA+AGG	-	chr6_3:75446910-75446929	None:intergenic	35.0%
	ATGTCATGTGGAAACAAATG+AGG	-	chr6_3:75447048-75447067	None:intergenic	35.0%
	ATGCATGCATTTATATGGAC+AGG	+	chr6_3:75447353-75447372	Msa0959080:three_prime_UTR	35.0%
!	TTGTTGTTACGAGGAATCCA+AGG	-	chr6_3:75442312-75442331	None:intergenic	40.0%
!!	GTTGAGTTGGTGGAATTGTT+GGG	-	chr6_3:75442402-75442421	None:intergenic	40.0%
	AGAGAGATTGAGCTGTTGTT+GGG	-	chr6_3:75442424-75442443	None:intergenic	40.0%
	TCTGTTCTTCGCTTCACATT+GGG	+	chr6_3:75442441-75442460	Msa0959080:CDS	40.0%
	AGATGTATATGGGCATGGTT+CGG	+	chr6_3:75442825-75442844	Msa0959080:intron	40.0%
	GTCAATTCAGCAGTTTGGTT+TGG	+	chr6_3:75443117-75443136	Msa0959080:intron	40.0%
!!	TGAGAGAATTTGTTAGCAGC+AGG	+	chr6_3:75443331-75443350	Msa0959080:intron	40.0%
!!	GAGAGAATTTGTTAGCAGCA+GGG	+	chr6_3:75443332-75443351	Msa0959080:intron	40.0%
	ATGTGTTAGGAAGCTTAAGG+AGG	-	chr6_3:75443373-75443392	None:intergenic	40.0%
	GGAATGTGTTAGGAAGCTTA+AGG	-	chr6_3:75443376-75443395	None:intergenic	40.0%
	CGATTGACTACACCAATACA+AGG	+	chr6_3:75443646-75443665	Msa0959080:intron	40.0%
	GTAAGGCAGTACAATTGAGA+AGG	-	chr6_3:75443951-75443970	None:intergenic	40.0%
	TCAATTGTACTGCCTTACCT+TGG	+	chr6_3:75443953-75443972	Msa0959080:CDS	40.0%
	TGTCTACGTCAGTGTTTCAT+AGG	-	chr6_3:75444275-75444294	None:intergenic	40.0%
	GCACTCTAACTTCAAAACGA+TGG	-	chr6_3:75444377-75444396	None:intergenic	40.0%
	ACAATATTCAGACATGGCTG+AGG	-	chr6_3:75444590-75444609	None:intergenic	40.0%
!	ATATTGTTAGGGTGCTCAAC+CGG	+	chr6_3:75444603-75444622	Msa0959080:intron	40.0%
	GGTATAGTTGTTTGTTCCAC+CGG	-	chr6_3:75444625-75444644	None:intergenic	40.0%
!	ATGTCAACAGATATAGCGGA+CGG	+	chr6_3:75444670-75444689	Msa0959080:CDS	40.0%
	TAATACAAACGCCATAGCTG+CGG	+	chr6_3:75444735-75444754	Msa0959080:CDS	40.0%
	TTCAAGGAGATATATGCGCA+AGG	+	chr6_3:75444954-75444973	Msa0959080:intron	40.0%
	TCAAGGAGATATATGCGCAA+GGG	+	chr6_3:75444955-75444974	Msa0959080:intron	40.0%
	GGGTGTCTTTCAAATCATTG+AGG	-	chr6_3:75445057-75445076	None:intergenic	40.0%
	TCATCATTACCTGCATCTTG+TGG	-	chr6_3:75445088-75445107	None:intergenic	40.0%
	ACCAGTTGGATTTATTCTGC+TGG	+	chr6_3:75445615-75445634	Msa0959080:CDS	40.0%
	ACCAGCAGAATAAATCCAAC+TGG	-	chr6_3:75445619-75445638	None:intergenic	40.0%
	TTAGCATTAAAGACAGAGCC+TGG	+	chr6_3:75445659-75445678	Msa0959080:CDS	40.0%
	GCTATTACCTCTAAGCTTGT+TGG	-	chr6_3:75445698-75445717	None:intergenic	40.0%
	CGGGAAAATGAGTAACAAAG+AGG	-	chr6_3:75446320-75446339	None:intergenic	40.0%
!!	TTTTTGTTTGCAGGCTGATG+TGG	+	chr6_3:75446427-75446446	Msa0959080:intron	40.0%
	AGCTAGGCTTATAAACACGA+AGG	-	chr6_3:75446457-75446476	None:intergenic	40.0%
	CAGAAACTTTCTACACCTCA+AGG	-	chr6_3:75446619-75446638	None:intergenic	40.0%
	GAGGTGTAGAAAGTTTCTGA+TGG	+	chr6_3:75446620-75446639	Msa0959080:three_prime_UTR	40.0%
	TTGAAGAGAATTACGTCCCT+CGG	+	chr6_3:75446770-75446789	Msa0959080:three_prime_UTR	40.0%
	TAGTAGCACATCATGTCATG+TGG	-	chr6_3:75447060-75447079	None:intergenic	40.0%
	TACCTCTACATGTGCATGTT+AGG	+	chr6_3:75447080-75447099	Msa0959080:three_prime_UTR	40.0%
	ATCCTAACATGCACATGTAG+AGG	-	chr6_3:75447085-75447104	None:intergenic	40.0%
	GGAGTAAAGATGAGCGTTAA+AGG	+	chr6_3:75447177-75447196	Msa0959080:three_prime_UTR	40.0%
	TAGTGTAGATGATTCCACTC+AGG	-	chr6_3:75447248-75447267	None:intergenic	40.0%
	TGGAATCATCTACACTACTC+TGG	+	chr6_3:75447251-75447270	Msa0959080:three_prime_UTR	40.0%
	ATTGTAGTCGATGAGCAAGT+TGG	-	chr6_3:75447277-75447296	None:intergenic	40.0%
	TGCATTTGTATCTGACCTAG+CGG	-	chr6_3:75447338-75447357	None:intergenic	40.0%
!	AACCAGTTCTGATGGAATTG+TGG	+	chr6_3:75447378-75447397	Msa0959080:three_prime_UTR	40.0%
!	ACCAGTTCTGATGGAATTGT+GGG	+	chr6_3:75447379-75447398	Msa0959080:three_prime_UTR	40.0%
!!	GGTTGAGTTGGTGGAATTGT+TGG	-	chr6_3:75442403-75442422	None:intergenic	45.0%
	CAGAGAGATTGAGCTGTTGT+TGG	-	chr6_3:75442425-75442444	None:intergenic	45.0%
	CTCTGTTCTTCGCTTCACAT+TGG	+	chr6_3:75442440-75442459	Msa0959080:CDS	45.0%
!!	TATATGGGCATGGTTCGGTT+CGG	+	chr6_3:75442830-75442849	Msa0959080:intron	45.0%
	CAGTTCGGTTCAGAACAGTT+TGG	-	chr6_3:75442942-75442961	None:intergenic	45.0%
!!	CGGTTCGGTTCAAAACAGTT+TGG	-	chr6_3:75443024-75443043	None:intergenic	45.0%
	TTCGGGTCAATTCAGCAGTT+TGG	+	chr6_3:75443112-75443131	Msa0959080:intron	45.0%
	TGTTAGGAAGCTTAAGGAGG+AGG	-	chr6_3:75443370-75443389	None:intergenic	45.0%
	AGCTTCCTAACACATTCCAC+CGG	+	chr6_3:75443378-75443397	Msa0959080:intron	45.0%
	TATAGCACACATTTCCCCGA+AGG	-	chr6_3:75443410-75443429	None:intergenic	45.0%
	AGCGTCACTATAGCTGCTAT+TGG	-	chr6_3:75443581-75443600	None:intergenic	45.0%
	GCTATAGTACTATAGCACGC+TGG	+	chr6_3:75443598-75443617	Msa0959080:intron	45.0%
!!!	AGAGGTTTTGGGTCTGTCTT+TGG	+	chr6_3:75443922-75443941	Msa0959080:CDS	45.0%
	GTGAATGTAGCCACATGTGT+CGG	+	chr6_3:75444323-75444342	Msa0959080:intron	45.0%
	CAAGGAGATATATGCGCAAG+GGG	+	chr6_3:75444956-75444975	Msa0959080:intron	45.0%
	AGAAGAGAACGAGTCCCTTT+AGG	-	chr6_3:75445544-75445563	None:intergenic	45.0%
	TAAAGGGACTCGTTCTCTTC+TGG	+	chr6_3:75445543-75445562	Msa0959080:CDS	45.0%
	GTTGTGCTCCAAGCTAGATT+TGG	-	chr6_3:75446137-75446156	None:intergenic	45.0%
	GACGAAGGGTAGTTATATCG+TGG	-	chr6_3:75446369-75446388	None:intergenic	45.0%
	GCAGTATCTCATGTCAGGAT+TGG	-	chr6_3:75446657-75446676	None:intergenic	45.0%
	AAGGTGCAGTATCTCATGTC+AGG	-	chr6_3:75446662-75446681	None:intergenic	45.0%
	GAGGGACGTAATTCTCTTCA+AGG	-	chr6_3:75446771-75446790	None:intergenic	45.0%
	TTCTCACAACTTTCCTCCGA+GGG	-	chr6_3:75446789-75446808	None:intergenic	45.0%
	TTTCTCACAACTTTCCTCCG+AGG	-	chr6_3:75446790-75446809	None:intergenic	45.0%
	TCATGCATTCTTGACCTGAG+TGG	+	chr6_3:75447231-75447250	Msa0959080:three_prime_UTR	45.0%
!!	CTTGAAAAGCATTTCCCGCT+AGG	+	chr6_3:75447320-75447339	Msa0959080:three_prime_UTR	45.0%
	GCATTTGTATCTGACCTAGC+GGG	-	chr6_3:75447337-75447356	None:intergenic	45.0%
	TCCCACAATTCCATCAGAAC+TGG	-	chr6_3:75447383-75447402	Msa0959090:CDS	45.0%
	AATACGTCACTCATGTCAGG+TGG	-	chr6_3:75447428-75447447	Msa0959090:CDS	45.0%
	CCAAATACGTCACTCATGTC+AGG	-	chr6_3:75447431-75447450	Msa0959090:CDS	45.0%
	CCTGACATGAGTGACGTATT+TGG	+	chr6_3:75447428-75447447	Msa0959080:three_prime_UTR	45.0%
!!!	TTTTTTTTTTTTTTTTTGTT+TGG	+	chr6_3:75443089-75443108	Msa0959080:intron	5.0%
!!	GAGTTGGTGGAATTGTTGGG+TGG	-	chr6_3:75442399-75442418	None:intergenic	50.0%
!!	CTGTTGTTGGGTTGAGTTGG+TGG	-	chr6_3:75442412-75442431	None:intergenic	50.0%
!!	GAGCTGTTGTTGGGTTGAGT+TGG	-	chr6_3:75442415-75442434	None:intergenic	50.0%
!!	ATATGGGCATGGTTCGGTTC+GGG	+	chr6_3:75442831-75442850	Msa0959080:intron	50.0%
	GCTTCCTAACACATTCCACC+GGG	+	chr6_3:75443379-75443398	Msa0959080:intron	50.0%
	GTAACCCGGTGGAATGTGTT+AGG	-	chr6_3:75443386-75443405	None:intergenic	50.0%
	ATTCCACCGGGTTACACCTT+CGG	+	chr6_3:75443391-75443410	Msa0959080:intron	50.0%
!	ATTTCCCCGAAGGTGTAACC+CGG	-	chr6_3:75443400-75443419	None:intergenic	50.0%
!	ACATCTGAGACCGACACATG+TGG	-	chr6_3:75444336-75444355	None:intergenic	50.0%
!!	AGATATAGCGGACGGTCTGA+AGG	+	chr6_3:75444678-75444697	Msa0959080:CDS	50.0%
	GTCTGAAGGAAGATCTGGCT+TGG	+	chr6_3:75444692-75444711	Msa0959080:CDS	50.0%
	CATGTGACATACCGCAGCTA+TGG	-	chr6_3:75444749-75444768	None:intergenic	50.0%
	CATAGCTGCGGTATGTCACA+TGG	+	chr6_3:75444747-75444766	Msa0959080:intron	50.0%
	ATATATGCGCAAGGGGCTAC+TGG	+	chr6_3:75444963-75444982	Msa0959080:intron	50.0%
	GCTGTTGCCAACAAGCTTAG+AGG	+	chr6_3:75445688-75445707	Msa0959080:CDS	50.0%
	AAGAGAATTACGTCCCTCGG+AGG	+	chr6_3:75446773-75446792	Msa0959080:three_prime_UTR	50.0%
!	GACAGGACAACCAGTTCTGA+TGG	+	chr6_3:75447370-75447389	Msa0959080:three_prime_UTR	50.0%
	TTAGCAGCAGGGATTGAGCC+CGG	+	chr6_3:75443343-75443362	Msa0959080:intron	55.0%
	GAAGCTTAAGGAGGAGGTCC+GGG	-	chr6_3:75443364-75443383	None:intergenic	55.0%
	GGAAGCTTAAGGAGGAGGTC+CGG	-	chr6_3:75443365-75443384	None:intergenic	55.0%
	TTCCACCGGGTTACACCTTC+GGG	+	chr6_3:75443392-75443411	Msa0959080:intron	55.0%
!	TTGTTAGGGTGCTCAACCGG+TGG	+	chr6_3:75444606-75444625	Msa0959080:intron	55.0%
	GGACGGTCTGAAGGAAGATC+TGG	+	chr6_3:75444687-75444706	Msa0959080:CDS	55.0%
	GTTGGCAACAGCTGCAATCC+AGG	-	chr6_3:75445680-75445699	None:intergenic	55.0%
	TCCACCGGGTTACACCTTCG+GGG	+	chr6_3:75443393-75443412	Msa0959080:intron	60.0%
!	TCCCCGAAGGTGTAACCCGG+TGG	-	chr6_3:75443397-75443416	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	75442248	75447460	75442248	ID=Msa0959080;Name=Msa0959080
chr6_3	mRNA	75442248	75447460	75442248	ID=Msa0959080-mRNA-1;Parent=Msa0959080;Name=Msa0959080-mRNA-1;_AED=0.14;_eAED=0.14;_QI=28\|0.8\|1\|1\|1\|1\|6\|1016\|234
chr6_3	exon	75442248	75442462	75442248	ID=Msa0959080-mRNA-1:exon:13485;Parent=Msa0959080-mRNA-1
chr6_3	exon	75442576	75442694	75442576	ID=Msa0959080-mRNA-1:exon:13486;Parent=Msa0959080-mRNA-1
chr6_3	exon	75443917	75443988	75443917	ID=Msa0959080-mRNA-1:exon:13487;Parent=Msa0959080-mRNA-1
chr6_3	exon	75444613	75444756	75444613	ID=Msa0959080-mRNA-1:exon:13488;Parent=Msa0959080-mRNA-1
chr6_3	exon	75445532	75445709	75445532	ID=Msa0959080-mRNA-1:exon:13489;Parent=Msa0959080-mRNA-1
chr6_3	exon	75446440	75447460	75446440	ID=Msa0959080-mRNA-1:exon:13490;Parent=Msa0959080-mRNA-1
chr6_3	five_prime_UTR	75442248	75442275	75442248	ID=Msa0959080-mRNA-1:five_prime_utr;Parent=Msa0959080-mRNA-1
chr6_3	CDS	75442276	75442462	75442276	ID=Msa0959080-mRNA-1:cds;Parent=Msa0959080-mRNA-1
chr6_3	CDS	75442576	75442694	75442576	ID=Msa0959080-mRNA-1:cds;Parent=Msa0959080-mRNA-1
chr6_3	CDS	75443917	75443988	75443917	ID=Msa0959080-mRNA-1:cds;Parent=Msa0959080-mRNA-1
chr6_3	CDS	75444613	75444756	75444613	ID=Msa0959080-mRNA-1:cds;Parent=Msa0959080-mRNA-1
chr6_3	CDS	75445532	75445709	75445532	ID=Msa0959080-mRNA-1:cds;Parent=Msa0959080-mRNA-1
chr6_3	CDS	75446440	75446444	75446440	ID=Msa0959080-mRNA-1:cds;Parent=Msa0959080-mRNA-1
chr6_3	three_prime_UTR	75446445	75447460	75446445	ID=Msa0959080-mRNA-1:three_prime_utr;Parent=Msa0959080-mRNA-1

Gene Sequence

>Msa0959080

ATGAACAGCATAACCACAACAATATCTTTGAAACCTTGGATTCCTCGTAACAACAACGTTGTTTTCCCCAAAACATGTTCCACAAAATCTACAACAACATTAGTTCGTGCAAATCTTCAACCACCCAACAATTCCACCAACTCAACCCAACAACAGCTCAATCTCTCTGTTCTTCGCTTCACATTGGGTATACCTGGTTTTGATGAATCTTACTTACCTAGATGGATTGGTTATGCTTTTGGTTCACTTCTTATCTTAAATCATTTTCTTGGTTCTGATTCTGTTACTGTTACAACAGCACAGCTAAGAACAGAGGTTTTGGGTCTGTCTTTGGCTTCCTTCTCAATTGTACTGCCTTACCTTGGTAAATTTCTCAAGGGTGCTCAACCGGTGGAACAAACAACTATACCAGATGAAGCGCAACAAATATTTGTCATGTCAACAGATATAGCGGACGGTCTGAAGGAAGATCTGGCTTGGACATCGTATATTTTGCTGCGTAATACAAACGCCATAGCTGCGGAACTTGTACCTAAAGGGACTCGTTCTCTTCTGGTGCAGCCAATATTACAAGTTTCTATCGAGAGTTCCACTGATTCACAAAAACCAGTTGGATTTATTCTGCTGGTCTCGACCATGAGATATGCATTTAGCATTAAAGACAGAGCCTGGATTGCAGCTGTTGCCAACAAGCTTAGAGGCTGA

Protein sequence

>Msa0959080

MNSITTTISLKPWIPRNNNVVFPKTCSTKSTTTLVRANLQPPNNSTNSTQQQLNLSVLRFTLGIPGFDESYLPRWIGYAFGSLLILNHFLGSDSVTVTTAQLRTEVLGLSLASFSIVLPYLGKFLKGAQPVEQTTIPDEAQQIFVMSTDIADGLKEDLAWTSYILLRNTNAIAAELVPKGTRSLLVQPILQVSIESSTDSQKPVGFILLVSTMRYAFSIKDRAWIAAVANKLRG*