AlfalfaGEDB | Msa0925730

M. sativa cultivar zhongmu-4 / Msa0925730

KEGG: -
GO: GO:0000096 GO:0000097 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF12854.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0925730	XP_003620888.1	94.407	447	24	1	1	447	1	446	0.0	854

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0925730	sp\|Q9ZQE5\|PP153_ARATH	52.500	360	165	3	89	447	225	579	9.05e-135	402

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001460	Msa0925730	0.834258	3.326231e-56	-8.615850e-47
Msa0001950	Msa0925730	0.815885	7.349008e-52	-8.615850e-47
Msa0003470	Msa0925730	0.834014	3.828912e-56	-8.615850e-47
Msa0004350	Msa0925730	0.822546	2.236269e-53	-8.615850e-47
Msa0008850	Msa0925730	0.814395	1.574496e-51	-8.615850e-47
Msa0012460	Msa0925730	0.830397	3.005151e-55	-8.615850e-47
Msa0017120	Msa0925730	0.861122	1.280345e-63	-8.615850e-47
Msa0017940	Msa0925730	0.829345	5.422402e-55	-8.615850e-47
Msa0020630	Msa0925730	0.820863	5.477360e-53	-8.615850e-47
Msa0024680	Msa0925730	0.812111	4.996592e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0925730	MtrunA17_Chr6g0488111	94.407	447	24	1	1	447	1	446	0.0	854
Msa0925730	MtrunA17_Chr6g0488351	88.393	448	30	3	1	447	1	427	0.0	787
Msa0925730	MtrunA17_Chr6g0488311	85.874	446	37	3	1	446	1	420	0.0	756
Msa0925730	MtrunA17_Chr6g0463061	90.809	272	24	1	9	280	1	271	4.15e-180	504
Msa0925730	MtrunA17_Chr4g0044971	52.463	406	179	7	50	447	139	538	1.47e-144	423
Msa0925730	MtrunA17_Chr1g0166031	44.818	357	181	3	107	447	1	357	1.55e-103	312
Msa0925730	MtrunA17_Chr5g0418021	43.411	387	199	4	81	447	216	602	2.70e-103	319
Msa0925730	MtrunA17_Chr2g0287621	42.105	380	206	5	82	447	77	456	3.32e-98	301
Msa0925730	MtrunA17_Chr2g0285601	40.852	399	205	6	79	447	216	613	7.53e-93	293
Msa0925730	MtrunA17_Chr2g0285601	27.568	185	133	1	90	274	130	313	3.52e-17	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0925730	AT2G15690.1	52.500	360	165	3	89	447	225	579	9.20e-136	402
Msa0925730	AT3G24000.1	39.329	417	212	8	66	447	223	633	7.10e-93	293
Msa0925730	AT3G24000.1	38.211	123	76	0	90	212	50	172	4.19e-19	90.5
Msa0925730	AT3G24000.1	25.556	180	129	3	105	282	166	342	3.28e-11	65.9
Msa0925730	AT4G30700.1	40.842	404	210	5	73	447	389	792	1.79e-92	296
Msa0925730	AT4G30700.1	26.425	193	138	2	90	282	312	500	6.51e-17	84.0
Msa0925730	AT4G32450.1	40.838	382	209	6	81	447	158	537	4.37e-92	289
Msa0925730	AT2G25580.2	39.642	391	216	5	76	447	226	615	3.27e-91	289
Msa0925730	AT2G25580.1	39.642	391	216	5	76	447	226	615	3.27e-91	289
Msa0925730	AT3G23330.2	39.851	404	214	5	73	447	203	606	6.48e-91	288

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Find 101 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCCGCCTTTACGTAT+GGG	0.575319	6_2:+69055721	Msa0925730:CDS
AAAATCATGTCCAAGATTGT+TGG	0.458631	6_2:+69056825	Msa0925730:CDS
AAAATGCCTGAGAGAAATGT+CGG	0.579396	6_2:+69056060	Msa0925730:CDS
AAAGATGGAAAATGCTCTTG+TGG	0.538565	6_2:+69056891	Msa0925730:CDS
AACCTTCACCCTCGTCAAAA+CGG	0.553675	6_2:+69055670	Msa0925730:CDS
AAGGAGTGTGGAATTGTTCC+GGG	0.399945	6_2:+69056264	Msa0925730:CDS
AATATGCCCTATAAAGAAGA+GGG	0.647133	6_2:+69056579	Msa0925730:CDS
AATGCAAAACTTTCCTCATC+AGG	0.490492	6_2:-69056177	None:intergenic
AATGCAGTTTGAATCGATGA+AGG	0.500807	6_2:+69056245	Msa0925730:CDS
AATGCTCTTGTGGAGATTAT+TGG	0.277711	6_2:+69056901	Msa0925730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTATAATGTGAATGGTTTA+GGG	+	chr6_2:69056106-69056125	Msa0925730:CDS	30.0%
AGAATAGAGTGAGTGAATAT+CGG	+	chr6_2:69056553-69056572	Msa0925730:CDS	30.0%
TAATATGCCCTATAAAGAAG+AGG	+	chr6_2:69056578-69056597	Msa0925730:CDS	30.0%
AATATGCCCTATAAAGAAGA+GGG	+	chr6_2:69056579-69056598	Msa0925730:CDS	30.0%
ATCAAGAATCTACGTATATG+TGG	+	chr6_2:69056783-69056802	Msa0925730:CDS	30.0%
AAAATCATGTCCAAGATTGT+TGG	+	chr6_2:69056825-69056844	Msa0925730:CDS	30.0%
AGATTCCATCATTTCAAAGA+TGG	+	chr6_2:69056876-69056895	Msa0925730:CDS	30.0%
GGTATAATGTGAATGGTTTA+GGG	+	chr6_2:69056106-69056125	Msa0925730:CDS	30.0%
AGAATAGAGTGAGTGAATAT+CGG	+	chr6_2:69056553-69056572	Msa0925730:CDS	30.0%
TAATATGCCCTATAAAGAAG+AGG	+	chr6_2:69056578-69056597	Msa0925730:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	69055583	69056926	69055583	ID=Msa0925730;Name=Msa0925730
chr6_2	mRNA	69055583	69056926	69055583	ID=Msa0925730-mRNA-1;Parent=Msa0925730;Name=Msa0925730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|447
chr6_2	exon	69055583	69056926	69055583	ID=Msa0925730-mRNA-1:exon:11087;Parent=Msa0925730-mRNA-1
chr6_2	CDS	69055583	69056926	69055583	ID=Msa0925730-mRNA-1:cds;Parent=Msa0925730-mRNA-1

Gene Sequence

>Msa0925730

ATGGAGCTTAAACTTCAAGCATCAATGGCTTCATCTTCATCTTCTTCCACTCCTTTCTGCACCTATGCAGTTCATCACCATGCCACCAACCTTCACCCTCGTCAAAACGGCTCCAACAACCGTCGTTTCACTCCCAGAAAAACCCCGCCTTTACGTATGGGTAACCCTTCAATCCAACCAAAATTGAACCATCATCAAAGCCGCAATCAACATAAAAATGCAAACTTTGCGCATTTTCTTCAAGAGGGTAACGTAAATCAAATTTTAGAATTAATGGGTCAAGGTGTTTTTGCAGATTATAGTGATTTTCTTTCTCTTTTGAAACTATGTGCGGATTTGAAGTCACTTGAATTAGGGAAAAGGGTTCATGAATTCTTGAGAAGATCAAAATTCGGAGGGAATGTTGAATTGTGTAATAGATTGATTGGGTTGTACGTGAAATGTGGTTGTGTGAAGGATGCGCGGAAAGTGTTTGATAAAATGCCTGAGAGAAATGTCGGTTCGTGGAATTTGATGATTAGTGGGTATAATGTGAATGGTTTAGGGAATGATGGTTTGTTGGTTTTTAAGCAGATGAGGCAACAAGGGGTAGTGCCTGATGAGGAAAGTTTTGCATTGGTTTTGGCGGCGTGTGCGTTGGTAGACGGTGTGGAAGAAGGTTTAATGCAGTTTGAATCGATGAAGGAGTGTGGAATTGTTCCGGGGATGGAGCATTATCTGGGTGTTGTTAATATTTTGGGGTGTGCTGGTCAGTTGGATGAAGCTCAGGAGTTTATTGAGAATATGCCAATTGAAGCCGGAGTTGAGGTTTGGGAGACTCTGCGAAATTTTGCGAGAATTCATGGAGACTTAGAACGTGAGGATCATGCTGATGAGCTGTTAACTGTTCTTGATCCTTCGAAAGCTGCTGCTGATAAAGTGCCACTCCCTCAGAGAAAGAAGCAGTCTGCAATTAACATGCTGGAGGAGAAGAATAGAGTGAGTGAATATCGGTGTAATATGCCCTATAAAGAAGAGGGTGATGTGAAATTGAGAGGTTTGACTGGGCAGATGAGGGAAGCAGGTTATGTTCCTGATACGAGATACGTTCTCCATGACATTGATGAGGAGGAAAAAGAAAAGGCTTTGCAGTATCATAGTGAACGTTTGGCAATTGCTTATGGTCTCATCAGTACTCCACCGAGGACTACGCTTAGAATTATCAAGAATCTACGTATATGTGGAGACTGTCACAATGCTATCAAAATCATGTCCAAGATTGTTGGAAGGGAGCTCATTGTGAGGGACAACAAGAGATTCCATCATTTCAAAGATGGAAAATGCTCTTGTGGAGATTATTGGTAG

Protein sequence

>Msa0925730

MELKLQASMASSSSSSTPFCTYAVHHHATNLHPRQNGSNNRRFTPRKTPPLRMGNPSIQPKLNHHQSRNQHKNANFAHFLQEGNVNQILELMGQGVFADYSDFLSLLKLCADLKSLELGKRVHEFLRRSKFGGNVELCNRLIGLYVKCGCVKDARKVFDKMPERNVGSWNLMISGYNVNGLGNDGLLVFKQMRQQGVVPDEESFALVLAACALVDGVEEGLMQFESMKECGIVPGMEHYLGVVNILGCAGQLDEAQEFIENMPIEAGVEVWETLRNFARIHGDLEREDHADELLTVLDPSKAAADKVPLPQRKKQSAINMLEEKNRVSEYRCNMPYKEEGDVKLRGLTGQMREAGYVPDTRYVLHDIDEEEKEKALQYHSERLAIAYGLISTPPRTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW*