AlfalfaGEDB | MsG0780036800.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036800.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036800.01.T01	KEH21845.1	96.774	62	2	0	1	62	1	62	1.87E-32	116
MsG0780036800.01.T02	KEH21845.1	100	37	0	0	1	37	26	62	8.38E-16	73.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036800.01.T01	A0A072U7N2	96.774	62	2	0	1	62	1	62	8.91e-33	116
MsG0780036800.01.T02	A0A072U7N2	100.000	37	0	0	1	37	26	62	4.00e-16	73.2

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048065.01	MsG0780036800.01	0.800107	1.682950e-48	7.770658e-46
MsG0080048463.01	MsG0780036800.01	0.801589	8.385952e-49	4.019933e-46
MsG0080048660.01	MsG0780036800.01	0.800955	1.130361e-48	5.333005e-46
MsG0080048683.01	MsG0780036800.01	0.800093	1.694193e-48	7.819785e-46
MsG0080048748.01	MsG0780036800.01	0.802827	4.662611e-49	2.306966e-46
MsG0080048849.01	MsG0780036800.01	0.848634	5.407449e-60	9.985854e-57
MsG0080048938.01	MsG0780036800.01	0.839589	1.447818e-57	2.008600e-54
MsG0080049068.01	MsG0780036800.01	0.804603	1.995649e-49	1.033350e-46
MsG0080049069.01	MsG0780036800.01	0.819876	9.226805e-53	7.187686e-50
MsG0180000026.01	MsG0780036800.01	0.813771	2.161841e-51	1.424547e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036800.01.T01	MTR_7g019160	96.774	62	2	0	1	62	1	62	2.26e-36	116
MsG0780036800.01.T01	MTR_6g016890	65.000	60	21	0	1	60	2	61	3.24e-21	78.2
MsG0780036800.01.T01	MTR_5g005330	61.290	62	18	3	3	58	5	66	1.82e-13	58.9
MsG0780036800.01.T02	MTR_7g019160	100.000	37	0	0	1	37	26	62	1.01e-19	73.2
MsG0780036800.01.T02	MTR_6g016890	77.143	35	8	0	1	35	27	61	3.03e-13	57.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 7 sgRNAs with CRISPR-Local

Find 7 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTCTCTTCAATAAGCTTTC+TGG	0.211273	7:+14120940	None:intergenic
ATGGGTCTTGGAAGACTGGT+AGG	0.573515	7:-14121061	MsG0780036800.01.T01:CDS
CAAGAAAGGGATATGGGTCT+TGG	0.416355	7:-14121073	None:intergenic
CTCTTCTCCATCTTATCATA+TGG	0.344037	7:+14120998	None:intergenic
GAAGAAGCCATATGATAAGA+TGG	0.518528	7:-14121005	MsG0780036800.01.T01:CDS
GAAGAGTGAGAGTATGAGAG+TGG	0.529189	7:-14120981	MsG0780036800.01.T01:CDS
GGATATGGGTCTTGGAAGAC+TGG	0.493445	7:-14121065	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AGTCTCTTCAATAAGCTTTC+TGG	+	Chr7:14121019-14121038	None:intergenic	35.0%
	CTCTTCTCCATCTTATCATA+TGG	+	Chr7:14120961-14120980	None:intergenic	35.0%
	GAAGAAGCCATATGATAAGA+TGG	-	Chr7:14120951-14120970	MsG0780036800.01.T01:CDS	35.0%
	ATGGGTCTTGGAAGACTGGT+AGG	-	Chr7:14120895-14120914	MsG0780036800.01.T01:CDS	50.0%
!	GAAGAGTGAGAGTATGAGAG+TGG	-	Chr7:14120975-14120994	MsG0780036800.01.T01:CDS	45.0%
!!	AAGTTGAAAGATTTTGTCTT+TGG	+	Chr7:14121060-14121079	None:intergenic	25.0%
!!!	AATTTCAAAGACTTTATTTT+TGG	+	Chr7:14120931-14120950	None:intergenic	15.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	14120895	14121083	14120895	ID=MsG0780036800.01;Name=MsG0780036800.01
Chr7	mRNA	14120895	14121083	14120895	ID=MsG0780036800.01.T01;Parent=MsG0780036800.01;Name=MsG0780036800.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|62
Chr7	exon	14120895	14121083	14120895	ID=MsG0780036800.01.T01:exon:2927;Parent=MsG0780036800.01.T01
Chr7	CDS	14120895	14121083	14120895	ID=MsG0780036800.01.T01:cds;Parent=MsG0780036800.01.T01
Chr7	mRNA	14120895	14121008	14120895	ID=MsG0780036800.01.T02;Parent=MsG0780036800.01;Name=MsG0780036800.01.T02;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|37
Chr7	exon	14120895	14121008	14120895	ID=MsG0780036800.01.T02:exon:2928;Parent=MsG0780036800.01.T02
Chr7	CDS	14120895	14121008	14120895	ID=MsG0780036800.01.T02:cds;Parent=MsG0780036800.01.T02

Gene Sequence	>MsG0780036800.01.T02 ATGGAGAAGAGTGAGAGTATGAGAGTGGAGATAAAGAGCAGAAAAGCCAGAAAGCTTATTGAAGAGACTCTCAAAATTGCTGATTCACCAAAGACAAAATCTTTCAACTTCTGA >MsG0780036800.01.T01 ATGGGTCTTGGAAGACTGGTAGGAACACTAAATCCAAAAATAAAGTCTTTGAAATTGAAGAAGCCATATGATAAGATGGAGAAGAGTGAGAGTATGAGAGTGGAGATAAAGAGCAGAAAAGCCAGAAAGCTTATTGAAGAGACTCTCAAAATTGCTGATTCACCAAAGACAAAATCTTTCAACTTCTGA
Protein sequence	>MsG0780036800.01.T02 MEKSESMRVEIKSRKARKLIEETLKIADSPKTKSFNF* >MsG0780036800.01.T01 MGLGRLVGTLNPKIKSLKLKKPYDKMEKSESMRVEIKSRKARKLIEETLKIADSPKTKSFNF*