AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039287


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039287.t1 MTR_2g072530 85.874 446 63 0 19 464 6 451 0.0 789
MS.gene039287.t1 MTR_2g072550 58.582 268 39 3 197 464 31 226 5.65e-92 278
MS.gene039287.t1 MTR_7g094030 33.263 472 280 14 7 459 7 462 2.24e-65 218
MS.gene039287.t1 MTR_2g082880 33.333 435 269 10 18 445 2 422 4.01e-65 216
MS.gene039287.t1 MTR_2g072720 34.136 457 260 16 26 459 39 477 6.55e-62 209
MS.gene039287.t1 MTR_2g082800 34.793 411 241 12 10 412 10 401 3.98e-58 197
MS.gene039287.t1 MTR_2g072730 33.482 448 274 15 17 449 7 445 5.09e-57 196
MS.gene039287.t1 MTR_1g115250 31.111 450 260 13 9 444 20 433 1.06e-55 191
MS.gene039287.t1 MTR_2g082850 35.946 370 206 12 10 363 10 364 6.91e-55 187
MS.gene039287.t1 MTR_4g032845 31.050 438 270 14 26 444 3 427 7.59e-53 184
MS.gene039287.t1 MTR_1g025870 35.219 389 214 16 76 443 132 503 3.16e-44 162
MS.gene039287.t1 MTR_2g082780 39.234 209 123 4 22 229 8 213 8.04e-39 140
MS.gene039287.t1 MTR_6g022350 27.551 490 273 15 22 444 2 476 2.89e-37 142
MS.gene039287.t1 MTR_2g067210 32.391 389 219 15 10 366 26 402 5.24e-37 142
MS.gene039287.t1 MTR_5g005700 29.935 461 273 15 26 447 31 480 6.59e-35 136
MS.gene039287.t1 MTR_5g005690 25.786 477 289 12 31 457 26 487 2.97e-31 125
MS.gene039287.t1 MTR_5g007090 27.879 495 261 20 1 447 10 456 8.74e-31 124
MS.gene039287.t1 MTR_1g115245 31.208 298 181 9 19 307 20 302 9.87e-29 115
MS.gene039287.t1 MTR_4g080590 27.610 431 294 12 25 447 22 442 2.44e-28 117
MS.gene039287.t1 MTR_8g006910 28.155 412 246 16 24 414 50 432 6.91e-27 113
MS.gene039287.t1 MTR_4g080787 26.250 480 272 18 26 458 19 463 1.54e-25 109
MS.gene039287.t1 MTR_5g007130 26.580 459 233 14 31 459 20 404 1.15e-24 105
MS.gene039287.t1 MTR_3g048290 25.690 471 287 14 26 460 23 466 3.94e-24 105
MS.gene039287.t1 MTR_7g023310 25.532 423 274 13 24 424 24 427 3.52e-22 99.4
MS.gene039287.t1 MTR_5g063450 29.930 284 154 11 25 296 26 276 6.66e-21 94.4
MS.gene039287.t1 MTR_4g032730 25.253 495 282 20 19 458 5 466 1.01e-20 94.7
MS.gene039287.t1 MTR_5g039950 25.166 453 265 17 25 458 22 419 4.34e-20 92.4
MS.gene039287.t1 MTR_4g080773 25.056 447 256 17 26 424 19 434 4.60e-20 93.2
MS.gene039287.t1 MTR_4g080773 25.056 447 256 17 26 424 19 434 4.89e-20 93.2
MS.gene039287.t1 MTR_3g018680 25.178 421 222 16 24 424 20 367 1.51e-19 90.9
MS.gene039287.t1 MTR_2g072710 28.877 187 115 5 279 460 22 195 2.64e-19 86.3
MS.gene039287.t1 MTR_5g084070 23.423 444 293 12 22 451 9 419 2.65e-18 87.4
MS.gene039287.t1 MTR_4g081030 27.439 328 211 9 25 344 16 324 4.87e-18 86.3
MS.gene039287.t1 MTR_4g080590 26.374 364 250 12 25 381 22 374 1.75e-16 81.3
MS.gene039287.t1 MTR_1g013560 25.287 435 251 17 22 424 15 407 2.66e-16 81.3
MS.gene039287.t1 MTR_8g062270 25.000 464 291 22 26 458 16 453 1.04e-15 79.3
MS.gene039287.t1 MTR_2g007450 20.335 477 293 14 13 460 3 421 3.74e-15 77.8
MS.gene039287.t1 MTR_0049s0110 24.893 466 261 20 26 458 8 417 5.41e-15 77.0
MS.gene039287.t1 MTR_8g468810 22.912 467 313 17 18 458 17 462 1.98e-14 75.5
MS.gene039287.t1 MTR_5g058100 23.348 454 264 16 19 459 2 384 2.29e-14 75.1
MS.gene039287.t1 MTR_8g467800 22.458 472 288 17 26 458 20 452 4.27e-14 74.7
MS.gene039287.t1 MTR_8g014160 23.992 471 249 21 18 458 33 424 4.82e-14 74.3
MS.gene039287.t1 MTR_5g007110 35.780 109 68 2 338 446 2 108 1.18e-13 67.8
MS.gene039287.t1 MTR_8g062080 24.632 475 281 17 23 464 20 450 4.39e-13 71.2
MS.gene039287.t1 MTR_3g105060 35.211 142 79 5 26 161 14 148 5.51e-13 70.5
MS.gene039287.t1 MTR_7g115270 22.319 457 260 16 26 456 12 399 6.59e-13 70.5
MS.gene039287.t1 MTR_1g013560 26.575 365 208 15 22 364 15 341 7.31e-13 70.1
MS.gene039287.t1 MTR_5g073370 24.944 445 254 19 26 459 5 380 1.62e-12 69.3
MS.gene039287.t1 MTR_1g016310 27.149 221 132 8 20 213 14 232 2.47e-12 68.2
MS.gene039287.t1 MTR_1g016310 27.149 221 132 8 20 213 14 232 2.72e-12 68.9
MS.gene039287.t1 MTR_7g094050 34.959 123 77 2 326 447 2 122 3.86e-12 63.9
MS.gene039287.t1 MTR_2g047858 25.000 176 127 3 22 192 111 286 1.37e-11 67.0
MS.gene039287.t1 MTR_3g107160 31.757 148 89 3 20 159 4 147 1.47e-11 66.2
MS.gene039287.t1 MTR_2g007500 30.714 140 78 3 26 162 14 137 1.85e-11 65.5
MS.gene039287.t1 MTR_0049s0110 26.536 358 197 16 26 364 8 318 2.97e-11 65.1
MS.gene039287.t1 MTR_7g032380 30.178 169 99 7 26 184 11 170 3.85e-11 64.7
MS.gene039287.t1 MTR_0049s0110 26.536 358 197 16 26 364 8 318 4.47e-11 64.7
MS.gene039287.t1 MTR_4g098590 27.500 200 122 7 28 211 1 193 4.92e-11 64.7
MS.gene039287.t1 MTR_2g082860 39.130 92 49 3 25 110 26 116 5.10e-11 60.5
MS.gene039287.t1 MTR_7g023330 27.897 233 151 8 204 424 139 366 6.96e-11 64.3
MS.gene039287.t1 MTR_0049s0110 34.437 151 90 7 26 172 8 153 7.39e-11 63.2
MS.gene039287.t1 MTR_1g016340 24.036 441 263 18 17 424 11 412 7.47e-11 64.3
MS.gene039287.t1 MTR_1g016340 24.036 441 263 18 17 424 6 407 9.04e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039287.t1 AT3G14710 28.541 473 284 13 8 458 1 441 9.78e-40 149
MS.gene039287.t1 AT4G10400 25.225 444 286 13 26 459 2 409 1.61e-22 99.8
MS.gene039287.t1 AT4G10400 25.225 444 286 13 26 459 2 409 1.61e-22 99.8
MS.gene039287.t1 AT4G10400 25.225 444 286 13 26 459 2 409 1.61e-22 99.8
MS.gene039287.t1 AT3G03030 25.926 432 281 15 26 424 2 427 1.91e-21 97.1
MS.gene039287.t1 AT5G22730 25.319 470 299 17 18 456 15 463 7.38e-21 95.5
MS.gene039287.t1 AT5G22730 25.319 470 299 17 18 456 15 463 7.38e-21 95.5
MS.gene039287.t1 AT4G14096 28.062 449 269 18 23 442 5 428 7.40e-21 95.5
MS.gene039287.t1 AT4G14096 28.062 449 269 18 23 442 5 428 7.40e-21 95.5
MS.gene039287.t1 AT3G59200 24.628 471 303 15 25 457 6 462 1.86e-19 91.3
MS.gene039287.t1 AT4G14103 26.027 438 267 15 23 442 5 403 2.47e-19 90.5
MS.gene039287.t1 AT4G14103 27.095 358 239 12 23 366 5 354 6.11e-19 89.0
MS.gene039287.t1 AT4G14103 27.095 358 239 12 23 366 5 354 6.11e-19 89.0
MS.gene039287.t1 AT2G42730 25.847 472 285 20 25 457 4 449 7.17e-19 89.4
MS.gene039287.t1 AT1G66310 24.847 491 275 22 8 456 1 439 1.17e-18 88.6
MS.gene039287.t1 AT3G59200 26.016 369 235 10 25 366 6 363 1.92e-18 87.0
MS.gene039287.t1 AT5G38590 25.485 412 264 12 26 424 2 383 4.16e-18 86.7
MS.gene039287.t1 AT3G59230 26.141 482 292 19 23 457 9 473 6.88e-18 86.7
MS.gene039287.t1 AT4G26340 25.301 415 267 11 26 425 2 388 7.23e-18 85.9
MS.gene039287.t1 AT3G03030 26.433 314 203 11 26 316 2 310 1.68e-17 84.0
MS.gene039287.t1 AT3G59240 27.115 461 285 18 25 452 7 449 4.67e-17 84.0
MS.gene039287.t1 AT3G58930 25.734 443 274 18 26 424 2 433 1.24e-16 82.4
MS.gene039287.t1 AT3G58930 25.734 443 274 18 26 424 2 433 1.24e-16 82.4
MS.gene039287.t1 AT3G58930 25.734 443 274 18 26 424 2 433 1.24e-16 82.4
MS.gene039287.t1 AT2G26030 22.529 435 275 18 26 426 4 410 1.62e-16 82.0
MS.gene039287.t1 AT2G26030 22.529 435 275 18 26 426 4 410 1.62e-16 82.0
MS.gene039287.t1 AT2G26030 22.273 440 275 18 26 426 4 415 1.73e-16 82.0
MS.gene039287.t1 AT3G60040 28.042 378 218 15 25 369 12 368 2.99e-16 81.6
MS.gene039287.t1 AT3G60040 28.042 378 218 15 25 369 229 585 3.70e-16 81.6
MS.gene039287.t1 AT3G60040 28.042 378 218 15 25 369 231 587 3.77e-16 81.6
MS.gene039287.t1 AT2G29930 24.632 475 294 20 23 458 9 458 3.99e-16 80.9
MS.gene039287.t1 AT2G29930 24.632 475 294 20 23 458 9 458 3.99e-16 80.9
MS.gene039287.t1 AT3G60040 28.042 378 218 15 25 369 231 587 4.07e-16 81.6
MS.gene039287.t1 AT1G16930 23.517 489 291 16 8 456 1 446 4.15e-16 80.9
MS.gene039287.t1 AT1G16930 23.517 489 291 16 8 456 1 446 4.15e-16 80.9
MS.gene039287.t1 AT1G16930 23.517 489 291 16 8 456 1 446 4.15e-16 80.9
MS.gene039287.t1 AT3G60040 28.042 378 218 15 25 369 232 588 4.33e-16 81.6
MS.gene039287.t1 AT2G29910 29.596 223 139 7 23 240 2 211 4.46e-16 79.7
MS.gene039287.t1 AT2G29910 29.596 223 139 7 23 240 2 211 4.46e-16 79.7
MS.gene039287.t1 AT1G69630 25.403 496 272 21 9 456 3 448 6.51e-16 80.1
MS.gene039287.t1 AT2G29910 29.596 223 139 7 23 240 2 211 6.83e-16 79.3
MS.gene039287.t1 AT2G29910 29.596 223 139 7 23 240 2 211 6.83e-16 79.3
MS.gene039287.t1 AT2G29910 29.596 223 139 7 23 240 2 211 6.83e-16 79.3
MS.gene039287.t1 AT2G29910 29.596 223 139 7 23 240 2 211 6.83e-16 79.3
MS.gene039287.t1 AT2G29910 29.596 223 139 7 23 240 26 235 8.11e-16 79.3
MS.gene039287.t1 AT4G09920 30.645 186 118 4 26 207 2 180 9.54e-16 78.2
MS.gene039287.t1 AT4G09920 30.645 186 118 4 26 207 2 180 9.54e-16 78.2
MS.gene039287.t1 AT4G09920 30.645 186 118 4 26 207 2 180 9.54e-16 78.2
MS.gene039287.t1 AT4G09920 30.645 186 118 4 26 207 2 180 1.04e-15 78.2
MS.gene039287.t1 AT4G09920 30.645 186 118 4 26 207 2 180 1.04e-15 78.2
MS.gene039287.t1 AT4G00160 24.295 461 288 15 25 458 15 441 1.61e-15 79.0
MS.gene039287.t1 AT3G58940 26.753 385 204 17 26 372 2 346 1.96e-15 79.3
MS.gene039287.t1 AT3G58940 26.753 385 204 17 26 372 2 346 1.96e-15 79.3
MS.gene039287.t1 AT3G49030 25.054 459 289 17 24 461 19 443 2.99e-15 78.2
MS.gene039287.t1 AT3G26922 26.901 171 118 2 26 194 14 179 3.78e-15 76.6
MS.gene039287.t1 AT3G26922 26.901 171 118 2 26 194 14 179 3.78e-15 76.6
MS.gene039287.t1 AT1G52650 26.136 440 263 18 26 426 2 418 5.31e-15 77.4
MS.gene039287.t1 AT1G48400 33.333 147 92 3 25 165 9 155 1.12e-14 76.6
MS.gene039287.t1 AT1G48400 33.333 147 92 3 25 165 9 155 1.18e-14 76.6
MS.gene039287.t1 AT1G55030 24.053 449 289 18 26 458 19 431 1.60e-14 75.9
MS.gene039287.t1 AT1G55030 24.053 449 289 18 26 458 9 421 1.97e-14 75.5
MS.gene039287.t1 AT4G13960 26.087 368 226 12 26 366 2 350 2.02e-14 75.5
MS.gene039287.t1 AT4G13960 26.087 368 226 12 26 366 2 350 2.02e-14 75.5
MS.gene039287.t1 AT3G49150 32.000 175 110 6 20 188 10 181 4.40e-14 74.7
MS.gene039287.t1 AT5G35995 24.187 492 278 20 23 458 2 454 5.02e-14 74.3
MS.gene039287.t1 AT5G35995 24.187 492 278 20 23 458 2 454 5.02e-14 74.3
MS.gene039287.t1 AT1G78760 24.066 482 264 25 23 456 13 440 5.34e-14 74.3
MS.gene039287.t1 AT5G56560 22.472 445 297 14 28 458 7 417 5.97e-14 73.9
MS.gene039287.t1 AT1G06630 27.100 369 226 15 23 369 9 356 1.67e-13 72.4
MS.gene039287.t1 AT1G06630 27.100 369 226 15 23 369 9 356 1.67e-13 72.4
MS.gene039287.t1 AT1G06630 27.100 369 226 15 23 369 9 356 1.67e-13 72.4
MS.gene039287.t1 AT1G06630 27.100 369 226 15 23 369 9 356 1.67e-13 72.4
MS.gene039287.t1 AT4G27050 24.286 490 277 21 24 458 2 452 1.96e-13 72.4
MS.gene039287.t1 AT4G27050 24.286 490 277 21 24 458 2 452 1.96e-13 72.4
MS.gene039287.t1 AT4G27050 24.286 490 277 21 24 458 2 452 1.96e-13 72.4
MS.gene039287.t1 AT4G27050 24.286 490 277 21 24 458 2 452 1.96e-13 72.4
MS.gene039287.t1 AT4G27050 24.286 490 277 21 24 458 2 452 1.96e-13 72.4
MS.gene039287.t1 AT1G06630 27.100 369 226 15 23 369 18 365 2.01e-13 72.4
MS.gene039287.t1 AT1G06630 27.100 369 226 15 23 369 9 356 2.12e-13 72.4
MS.gene039287.t1 AT3G03040 25.137 366 239 15 26 366 2 357 2.68e-13 72.0
MS.gene039287.t1 AT1G06630 31.395 172 110 4 23 186 9 180 3.01e-13 70.9
MS.gene039287.t1 AT1G06630 26.648 364 226 14 23 366 9 351 3.93e-13 70.9
MS.gene039287.t1 AT1G06630 26.648 364 226 14 23 366 9 351 3.93e-13 70.9
MS.gene039287.t1 AT1G58310 25.203 492 299 17 25 458 7 487 5.31e-13 71.2
MS.gene039287.t1 AT4G10420 25.215 349 221 10 123 459 2 322 5.66e-13 70.1
MS.gene039287.t1 AT4G26350 29.143 175 110 5 26 194 2 168 6.45e-13 70.9
MS.gene039287.t1 AT5G56380 22.807 456 312 15 26 459 2 439 6.87e-13 70.9
MS.gene039287.t1 AT5G56380 22.807 456 312 15 26 459 2 439 6.87e-13 70.9
MS.gene039287.t1 AT3G59190 27.528 178 119 5 17 186 3 178 6.97e-13 70.5
MS.gene039287.t1 AT3G52680 22.103 466 290 15 25 458 20 444 8.89e-13 70.5
MS.gene039287.t1 AT3G49040 27.556 225 128 7 26 234 17 222 1.24e-12 68.9
MS.gene039287.t1 AT3G59190 27.907 172 114 5 23 186 9 178 1.27e-12 70.1
MS.gene039287.t1 AT5G38392 31.544 149 91 4 26 165 2 148 1.48e-12 67.4
MS.gene039287.t1 AT2G26860 24.299 428 264 15 26 425 2 397 1.99e-12 69.3
MS.gene039287.t1 AT2G26860 24.299 428 264 15 26 425 2 397 1.99e-12 69.3
MS.gene039287.t1 AT3G59170 24.056 503 271 23 25 458 6 466 2.43e-12 69.3
MS.gene039287.t1 AT4G13965 23.529 408 271 12 26 421 10 388 2.50e-12 68.9
MS.gene039287.t1 AT5G41630 28.177 181 113 6 23 188 9 187 2.77e-12 68.9
MS.gene039287.t1 AT3G49030 27.315 216 144 5 24 234 19 226 4.33e-12 68.2
MS.gene039287.t1 AT5G44980 23.256 430 281 15 24 428 2 407 6.52e-12 67.8
MS.gene039287.t1 AT5G44980 23.256 430 281 15 24 428 2 407 6.52e-12 67.8
MS.gene039287.t1 AT4G22280 23.318 446 294 14 26 458 2 412 7.75e-12 67.4
MS.gene039287.t1 AT3G50710 21.786 459 295 17 26 456 2 424 8.99e-12 67.4
MS.gene039287.t1 AT5G56440 33.140 172 102 7 26 191 2 166 9.08e-12 67.4
MS.gene039287.t1 AT3G42770 24.729 461 278 20 28 457 1 423 9.37e-12 67.4
MS.gene039287.t1 AT5G56410 23.434 431 267 17 33 427 10 413 1.04e-11 67.4
MS.gene039287.t1 AT3G58930 24.598 435 255 17 26 424 2 399 1.33e-11 66.6
MS.gene039287.t1 AT3G58930 24.598 435 255 17 26 424 2 399 1.33e-11 66.6
MS.gene039287.t1 AT1G64540 24.528 477 280 21 25 458 4 443 1.34e-11 66.6
MS.gene039287.t1 AT1G64540 24.528 477 280 21 25 458 4 443 1.34e-11 66.6
MS.gene039287.t1 AT5G38590 28.037 214 143 4 26 236 2 207 1.77e-11 65.5
MS.gene039287.t1 AT5G38396 23.641 368 242 11 26 366 2 357 1.92e-11 66.2
MS.gene039287.t1 AT4G10410 32.192 146 95 1 40 185 1 142 2.08e-11 64.7
MS.gene039287.t1 AT3G58880 25.067 371 234 15 26 370 3 355 3.92e-11 65.5
MS.gene039287.t1 AT3G58860 23.729 354 240 13 26 366 7 343 4.12e-11 65.5
MS.gene039287.t1 AT3G26922 24.516 155 110 2 42 194 1 150 4.37e-11 63.9
MS.gene039287.t1 AT3G26922 24.516 155 110 2 42 194 1 150 4.37e-11 63.9
MS.gene039287.t1 AT5G56690 26.168 214 148 6 28 235 4 213 4.69e-11 65.1
MS.gene039287.t1 AT5G02920 30.769 195 112 8 26 215 28 204 6.64e-11 63.2
MS.gene039287.t1 AT5G22730 25.132 378 239 14 18 367 15 376 6.78e-11 64.3
MS.gene039287.t1 AT5G53640 25.694 144 101 1 18 161 14 151 8.23e-11 62.4
MS.gene039287.t1 AT5G44950 23.095 433 274 19 25 426 3 407 9.52e-11 63.9
MS.gene039287.t1 AT5G41830 28.070 171 102 5 22 171 9 179 9.64e-11 64.3

Find 53 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATCTTTAGATTGATTA+TGG 0.175935 2.2:+20197602 None:intergenic
AACTCTCCTTTCTAAGATAA+AGG 0.259318 2.2:+20197419 None:intergenic
GCATCGACTATAAACCTTAA+TGG 0.263797 2.2:+20197050 None:intergenic
CCAAACTTCAATCCAACTTC+TGG 0.268395 2.2:+20197629 None:intergenic
ATCATGTAAATATGCCATTA+AGG 0.269665 2.2:-20197064 MS.gene039287:CDS
ACATTACATGAAAGCATTCT+TGG 0.297529 2.2:-20197705 MS.gene039287:CDS
CCAGAAGTTGGATTGAAGTT+TGG 0.300897 2.2:-20197629 MS.gene039287:CDS
AAACAAGAGTATTAAGAATT+GGG 0.310703 2.2:+20196631 None:intergenic
AAAACAAGAGTATTAAGAAT+TGG 0.321700 2.2:+20196630 None:intergenic
TGTTGTTGATGAAGATAAAA+AGG 0.327183 2.2:-20196941 MS.gene039287:CDS
TTCACCAATCTGCCTGTCTT+TGG 0.335476 2.2:-20196720 MS.gene039287:CDS
CCTTCTGTTGTTTCACCTGA+TGG 0.356513 2.2:+20197747 None:intergenic
GCGATATGAAGATATTGATT+TGG 0.364051 2.2:-20196032 MS.gene039287:CDS
GGATTTGAACAATGCAACTA+TGG 0.365906 2.2:-20197790 MS.gene039287:CDS
AAGCTAATGTTCTGTGTTGT+TGG 0.374573 2.2:+20197144 None:intergenic
CTTAACAGATTTCTCATATG+AGG 0.389788 2.2:-20197028 MS.gene039287:CDS
TACATGATTTATTTGAATGA+TGG 0.398273 2.2:+20197079 None:intergenic
AATGCGAAAGAGTATGATCT+TGG 0.402234 2.2:-20196124 MS.gene039287:CDS
TTAAGCAAAGAGAGAAACTT+TGG 0.410637 2.2:+20197484 None:intergenic
GCTTCAAACACTTTGAGAAT+CGG 0.411946 2.2:+20197183 None:intergenic
CTTCAAACACTTTGAGAATC+GGG 0.419619 2.2:+20197184 None:intergenic
GTGCTAACCGCGTCTATGAT+TGG 0.420698 2.2:+20197663 None:intergenic
AAGATTGATGATAGTTTGCT+TGG 0.424937 2.2:-20197588 MS.gene039287:CDS
CCTTCCAAAGACAGGCAGAT+TGG 0.430732 2.2:+20196716 None:intergenic
CTAGCATTCTATCCAGAAGT+TGG 0.443558 2.2:-20197641 MS.gene039287:CDS
GGATTTCCTTTATCTTAGAA+AGG 0.446472 2.2:-20197425 MS.gene039287:CDS
CTCAAAGTGTTTGAAGCTAG+AGG 0.446938 2.2:-20197177 MS.gene039287:CDS
GAAAGAGTATGATCTTGGTT+TGG 0.459333 2.2:-20196119 MS.gene039287:CDS
CTGTTGTTTCACCTGATGGA+AGG 0.467906 2.2:+20197751 None:intergenic
TAGTTTGCTTGGTTCTAAGA+AGG 0.491339 2.2:-20197577 MS.gene039287:CDS
ATTGAAAACTTCTCAAGTAA+AGG 0.498014 2.2:+20197114 None:intergenic
TTTAAGACAAATCGATGAAG+TGG 0.500710 2.2:-20196881 MS.gene039287:CDS
TAAGTTAACCTTCCAAAGAC+AGG 0.506614 2.2:+20196708 None:intergenic
TAAGAAGGAAAAGATGCAAA+AGG 0.508260 2.2:-20197562 MS.gene039287:CDS
GAAACAAAACACCTTCCATC+AGG 0.516491 2.2:-20197762 MS.gene039287:CDS
AACTTATCTGCAACTAAATG+AGG 0.518407 2.2:-20196691 MS.gene039287:CDS
CCAATCTGCCTGTCTTTGGA+AGG 0.521176 2.2:-20196716 MS.gene039287:CDS
TATTAAGAATTGGGGAATTG+CGG 0.526660 2.2:+20196640 None:intergenic
GTTGGAAAATGCAGCAATGT+TGG 0.535430 2.2:-20196086 MS.gene039287:CDS
AACAAGAGTATTAAGAATTG+GGG 0.542817 2.2:+20196632 None:intergenic
TGGTTTGGTTAAATTCATGT+TGG 0.555114 2.2:-20196104 MS.gene039287:CDS
TTAACAGATTTCTCATATGA+GGG 0.557255 2.2:-20197027 MS.gene039287:CDS
AAGGACAGAATGGAAGAACT+TGG 0.560909 2.2:-20196922 MS.gene039287:CDS
ATGCATCTCAGATAAGTGAA+TGG 0.564518 2.2:-20197446 MS.gene039287:CDS
CTGCAACTAAATGAGGTCAC+TGG 0.573768 2.2:-20196684 MS.gene039287:CDS
TCAAAGTGTTTGAAGCTAGA+GGG 0.585679 2.2:-20197176 MS.gene039287:CDS
TTGCAATAGTTAGAACACCT+TGG 0.610190 2.2:+20195980 None:intergenic
TTGAAGCTAGAGGGTGCGAA+TGG 0.623897 2.2:-20197167 MS.gene039287:CDS
GGAGAAGATGATGATATCGC+TGG 0.630933 2.2:-20196065 MS.gene039287:CDS
CCATCAGGTGAAACAACAGA+AGG 0.638403 2.2:-20197747 MS.gene039287:CDS
AGCAGATACTCTCATTACCA+AGG 0.666981 2.2:-20195997 MS.gene039287:CDS
ATTCATTCCAATCATAGACG+CGG 0.694975 2.2:-20197670 MS.gene039287:CDS
AAGCTTGACAGAAAGCAGTG+AGG 0.749319 2.2:+20196172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTATGATAGTTAAA+TGG - chr2.2:20196916-20196935 MS.gene039287:CDS 15.0%
!! ATCAATCTTTAGATTGATTA+TGG + chr2.2:20196142-20196161 None:intergenic 20.0%
!! TACATGATTTATTTGAATGA+TGG + chr2.2:20196665-20196684 None:intergenic 20.0%
!!! AAAACAAGAGTATTAAGAAT+TGG + chr2.2:20197114-20197133 None:intergenic 20.0%
!!! AAACAAGAGTATTAAGAATT+GGG + chr2.2:20197113-20197132 None:intergenic 20.0%
!!! AAGAAATTTAATGTCTTGTT+TGG - chr2.2:20197171-20197190 MS.gene039287:CDS 20.0%
!!! ACTGAAATTATTGTTTTACA+AGG - chr2.2:20196887-20196906 MS.gene039287:CDS 20.0%
!!! AGTTATATCTTTTGAACAAA+TGG + chr2.2:20196529-20196548 None:intergenic 20.0%
!!! ATTAAGTTGTTTTTTCAATC+AGG - chr2.2:20197438-20197457 MS.gene039287:CDS 20.0%
!!! GTTTTACTTAATGTAAGTTT+AGG - chr2.2:20197129-20197148 MS.gene039287:CDS 20.0%
!!! TATTGATTTGGAAAAAGTTA+AGG - chr2.2:20197721-20197740 MS.gene039287:CDS 20.0%
!!! TTAAGTTGTTTTTTCAATCA+GGG - chr2.2:20197439-20197458 MS.gene039287:CDS 20.0%
! ATCATGTAAATATGCCATTA+AGG - chr2.2:20196677-20196696 MS.gene039287:CDS 25.0%
! ATTGAAAACTTCTCAAGTAA+AGG + chr2.2:20196630-20196649 None:intergenic 25.0%
! TCATGATACACAAAATTTCA+GGG - chr2.2:20197503-20197522 MS.gene039287:CDS 25.0%
! TTAACAGATTTCTCATATGA+GGG - chr2.2:20196714-20196733 MS.gene039287:CDS 25.0%
! TTCAAAAACTTAGCATTTCT+GGG - chr2.2:20196481-20196500 MS.gene039287:intron 25.0%
!! AGAAGTTTTCAATAGCAATA+TGG - chr2.2:20196637-20196656 MS.gene039287:CDS 25.0%
!! TGTTGTTGATGAAGATAAAA+AGG - chr2.2:20196800-20196819 MS.gene039287:intron 25.0%
!!! AACAAGAGTATTAAGAATTG+GGG + chr2.2:20197112-20197131 None:intergenic 25.0%
!!! ATTTAATGTCTTGTTTGGAT+TGG - chr2.2:20197176-20197195 MS.gene039287:CDS 25.0%
AACTTATCTGCAACTAAATG+AGG - chr2.2:20197050-20197069 MS.gene039287:CDS 30.0%
CTAGAATAGCTTACAAAAAC+AGG - chr2.2:20197310-20197329 MS.gene039287:CDS 30.0%
CTCATGATACACAAAATTTC+AGG - chr2.2:20197502-20197521 MS.gene039287:CDS 30.0%
CTTAACAGATTTCTCATATG+AGG - chr2.2:20196713-20196732 MS.gene039287:CDS 30.0%
CTTCAAAAACTTAGCATTTC+TGG - chr2.2:20196480-20196499 MS.gene039287:intron 30.0%
GATAGTTAAATGGCTATAGT+TGG - chr2.2:20196926-20196945 MS.gene039287:CDS 30.0%
GCTTAAAGTATAAGCACTTA+TGG + chr2.2:20197413-20197432 None:intergenic 30.0%
GCTTATTTGAACTGATCTAT+TGG - chr2.2:20197198-20197217 MS.gene039287:CDS 30.0%
GGATTTCCTTTATCTTAGAA+AGG - chr2.2:20196316-20196335 MS.gene039287:intron 30.0%
TAAAATTTCTCTTGTCTTGC+AGG - chr2.2:20196975-20196994 MS.gene039287:CDS 30.0%
TAAGAAGGAAAAGATGCAAA+AGG - chr2.2:20196179-20196198 MS.gene039287:CDS 30.0%
TATTAAGAATTGGGGAATTG+CGG + chr2.2:20197104-20197123 None:intergenic 30.0%
TGAAGATAAAAAGGACAGAA+TGG - chr2.2:20196809-20196828 MS.gene039287:intron 30.0%
TTAAGCAAAGAGAGAAACTT+TGG + chr2.2:20196260-20196279 None:intergenic 30.0%
! AAGCTATTCTAGAGAACTTA+TGG + chr2.2:20197302-20197321 None:intergenic 30.0%
! CAGAAATGCTAAGTTTTTGA+AGG + chr2.2:20196482-20196501 None:intergenic 30.0%
! GCGATATGAAGATATTGATT+TGG - chr2.2:20197709-20197728 MS.gene039287:CDS 30.0%
! TTTAAGACAAATCGATGAAG+TGG - chr2.2:20196860-20196879 MS.gene039287:CDS 30.0%
!! AACTCTCCTTTCTAAGATAA+AGG + chr2.2:20196325-20196344 None:intergenic 30.0%
!! AAGATTGATGATAGTTTGCT+TGG - chr2.2:20196153-20196172 MS.gene039287:CDS 30.0%
!! ACATTACATGAAAGCATTCT+TGG - chr2.2:20196036-20196055 MS.gene039287:CDS 30.0%
!! TGCTAAGTTTTTGAAGGTTT+TGG + chr2.2:20196476-20196495 None:intergenic 30.0%
!! TGGTTTGGTTAAATTCATGT+TGG - chr2.2:20197637-20197656 MS.gene039287:CDS 30.0%
!! TTTTGGAGACAAACAGATAT+GGG + chr2.2:20196459-20196478 None:intergenic 30.0%
AAGCTAATGTTCTGTGTTGT+TGG + chr2.2:20196600-20196619 None:intergenic 35.0%
ATGCATCTCAGATAAGTGAA+TGG - chr2.2:20196295-20196314 MS.gene039287:intron 35.0%
ATTCATTCCAATCATAGACG+CGG - chr2.2:20196071-20196090 MS.gene039287:CDS 35.0%
ATTGCAGCGAAAAAGTGAAT+CGG + chr2.2:20196391-20196410 None:intergenic 35.0%
GGATTTGAACAATGCAACTA+TGG - chr2.2:20195951-20195970 MS.gene039287:CDS 35.0%
TAAGTTAACCTTCCAAAGAC+AGG + chr2.2:20197036-20197055 None:intergenic 35.0%
TTGCAATAGTTAGAACACCT+TGG + chr2.2:20197764-20197783 None:intergenic 35.0%
! AATGCGAAAGAGTATGATCT+TGG - chr2.2:20197617-20197636 MS.gene039287:CDS 35.0%
! CTTCAAACACTTTGAGAATC+GGG + chr2.2:20196560-20196579 None:intergenic 35.0%
! GAAAGAGTATGATCTTGGTT+TGG - chr2.2:20197622-20197641 MS.gene039287:CDS 35.0%
! GCTTCAAACACTTTGAGAAT+CGG + chr2.2:20196561-20196580 None:intergenic 35.0%
! TCAAAGTGTTTGAAGCTAGA+GGG - chr2.2:20196565-20196584 MS.gene039287:intron 35.0%
!! GCATCGACTATAAACCTTAA+TGG + chr2.2:20196694-20196713 None:intergenic 35.0%
!! TAGTTTGCTTGGTTCTAAGA+AGG - chr2.2:20196164-20196183 MS.gene039287:CDS 35.0%
!!! GTTTTGGAGACAAACAGATA+TGG + chr2.2:20196460-20196479 None:intergenic 35.0%
AAGGACAGAATGGAAGAACT+TGG - chr2.2:20196819-20196838 MS.gene039287:intron 40.0%
AGCAGATACTCTCATTACCA+AGG - chr2.2:20197744-20197763 MS.gene039287:CDS 40.0%
CCAAACTTCAATCCAACTTC+TGG + chr2.2:20196115-20196134 None:intergenic 40.0%
CCAGAAGTTGGATTGAAGTT+TGG - chr2.2:20196112-20196131 MS.gene039287:CDS 40.0%
CTAGCATTCTATCCAGAAGT+TGG - chr2.2:20196100-20196119 MS.gene039287:CDS 40.0%
GAAAAAGTGAATCGGAAGGA+AGG + chr2.2:20196383-20196402 None:intergenic 40.0%
GAAACAAAACACCTTCCATC+AGG - chr2.2:20195979-20195998 MS.gene039287:CDS 40.0%
GTTGGAAAATGCAGCAATGT+TGG - chr2.2:20197655-20197674 MS.gene039287:CDS 40.0%
! CTCAAAGTGTTTGAAGCTAG+AGG - chr2.2:20196564-20196583 MS.gene039287:intron 40.0%
! CTCTTGTCTTGCAGGTTTTA+AGG - chr2.2:20196983-20197002 MS.gene039287:CDS 40.0%
!!! TGATGATATCGCTGGCTTTT+TGG - chr2.2:20197684-20197703 MS.gene039287:CDS 40.0%
AAGCTTGACAGAAAGCAGTG+AGG + chr2.2:20197572-20197591 None:intergenic 45.0%
CAGCGAAAAAGTGAATCGGA+AGG + chr2.2:20196387-20196406 None:intergenic 45.0%
CCATCAGGTGAAACAACAGA+AGG - chr2.2:20195994-20196013 MS.gene039287:CDS 45.0%
CTGCAACTAAATGAGGTCAC+TGG - chr2.2:20197057-20197076 MS.gene039287:CDS 45.0%
GGAGAAGATGATGATATCGC+TGG - chr2.2:20197676-20197695 MS.gene039287:CDS 45.0%
TTCACCAATCTGCCTGTCTT+TGG - chr2.2:20197021-20197040 MS.gene039287:CDS 45.0%
!! CCTTCTGTTGTTTCACCTGA+TGG + chr2.2:20195997-20196016 None:intergenic 45.0%
!! CTGTTGTTTCACCTGATGGA+AGG + chr2.2:20195993-20196012 None:intergenic 45.0%
!!! GTCTTGCAGGTTTTAAGGCA+TGG - chr2.2:20196988-20197007 MS.gene039287:CDS 45.0%
CCAATCTGCCTGTCTTTGGA+AGG - chr2.2:20197025-20197044 MS.gene039287:CDS 50.0%
CCTTCCAAAGACAGGCAGAT+TGG + chr2.2:20197028-20197047 None:intergenic 50.0%
GTGCTAACCGCGTCTATGAT+TGG + chr2.2:20196081-20196100 None:intergenic 50.0%
! TTGAAGCTAGAGGGTGCGAA+TGG - chr2.2:20196574-20196593 MS.gene039287:intron 50.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 20195949 20197814 20195949 ID=MS.gene039287
chr2.2 mRNA 20195949 20197814 20195949 ID=MS.gene039287.t1;Parent=MS.gene039287
chr2.2 exon 20196855 20197814 20196855 ID=MS.gene039287.t1.exon1;Parent=MS.gene039287.t1
chr2.2 CDS 20196855 20197814 20196855 ID=cds.MS.gene039287.t1;Parent=MS.gene039287.t1
chr2.2 exon 20196623 20196766 20196623 ID=MS.gene039287.t1.exon2;Parent=MS.gene039287.t1
chr2.2 CDS 20196623 20196766 20196623 ID=cds.MS.gene039287.t1;Parent=MS.gene039287.t1
chr2.2 exon 20195949 20196239 20195949 ID=MS.gene039287.t1.exon3;Parent=MS.gene039287.t1
chr2.2 CDS 20195949 20196239 20195949 ID=cds.MS.gene039287.t1;Parent=MS.gene039287.t1
Gene Sequence

>MS.gene039287

ATGGATTTGAACAATGCAACTATGGAAGATGAAACAAAACACCTTCCATCAGGTGAAACAACAGAAGGAGAAAGAGACATGATTAGCACATTACATGAAAGCATTCTTGGTCACATCATGTCATTCATTCCAATCATAGACGCGGTTAGCACTAGCATTCTATCCAGAAGTTGGATTGAAGTTTGGAAATCCATAATCAATCTAAAGATTGATGATAGTTTGCTTGGTTCTAAGAAGGAAAAGATGCAAAAGGAACAGTTTGTGAATTTTGTTGAAAAAGTGCTCATTCACTTCACTAACTCAAGCATCCAAAGTTTCTCTCTTTGCTTAACTAGTCATCAATATGATGCATCTCAGATAAGTGAATGGATTTCCTTTATCTTAGAAAGGAGAGTTCAAAAGCTTCATATTCAATATGCTGATAAAATTTTCCTTCCTTCCGATTCACTTTTTCGCTGCAATTCTCTAGTCGATTTGACGCTTCAAATGAGATGTACTCTTACTCTTCCCATATCTGTTTGTCTCCAAAACCTTCAAAAACTTAGCATTTCTGGGATTAAATTAGTGAGTGATTCGTCCATTTGTTCAAAAGATATAACTCTCAATTTCCCGATTCTCAAAGTGTTTGAAGCTAGAGGGTGCGAATGGCCAACAACACAGAACATTAGCTTACAAGTACCTTTACTTGAGAAGTTTTCAATAGCAATATGGAACCATCATTCAAATAAATCATGTAAATATGCCATTAAGGTTTATAGTCGATGCTTAACAGATTTCTCATATGAGGGTGATCTTGAACAAGACATCGTTCTGTGTGATTCAGTGTCAATTCGTAATGCTTCTGTTGTGATTGTTGTTGATGAAGATAAAAAGGACAGAATGGAAGAACTTGGCTTTCGAGCATATAATCTTTTAAGACAAATCGATGAAGTGGAACAACTGAAATTATTGTTTTACAAGGTATGCTTTTCTTTTATGATAGTTAAATGGCTATAGTTGGACAAAAAAAAAAACTCAGAATTTGAATAAAATTTCTCTTGTCTTGCAGGTTTTAAGGCATGGTAAAGATATTTTCACCAATCTGCCTGTCTTTGGAAGGTTAACTTATCTGCAACTAAATGAGGTCACTGGTGAAGCTTTGTTGCAATTACTCCGCAATTCCCCAATTCTTAATACTCTTGTTTTACTTAATGTAAGTTTAGGTACTCTTAACTTTTGTTCAAAGAAATTTAATGTCTTGTTTGGATTGGCTTATTTGAACTGATCTATTGGTTTAAACACTTGTATGACTGTTTGAAAGAACATATAAAAACAACTTATGAAATGTCATAAGCTGCTTTCAGCTTATTTCCATAAGTTCTCTAGAATAGCTTACAAAAACAGGTTATAGCTTATTATATGAAAAAAGTTTGACTTAATTTTATTTTTGTTATTGACATAACTTATACATAAGAAGTTATGCCATAAGTGCTTATACTTTAAGCGCTTAATTAAGTTGTTTTTTCAATCAGGGACTTTATTACATATAACAAAATAATGTCGATGATAGATAACTCATGATACACAAAATTTCAGGGAGTAGATGATTTGCATAAAGATGTCTTCACTTCTGCAATATTACCTCACTGCTTTCTGTCAAGCTTCAAAGTAATTCAGTTTAAAGCATTCAATGCGAAAGAGTATGATCTTGGTTTGGTTAAATTCATGTTGGAAAATGCAGCAATGTTGGAGAAGATGATGATATCGCTGGCTTTTTGGCTGCGATATGAAGATATTGATTTGGAAAAAGTTAAGGAGCAGATACTCTCATTACCAAGGTGTTCTAACTATTGCAAGATAGAATTTTCTGATATCAGTAGTTCCTGA

Protein sequence

>MS.gene039287.t1

MDLNNATMEDETKHLPSGETTEGERDMISTLHESILGHIMSFIPIIDAVSTSILSRSWIEVWKSIINLKIDDSLLGSKKEKMQKEQFVNFVEKVLIHFTNSSIQSFSLCLTSHQYDASQISEWISFILERRVQKLHIQYADKIFLPSDSLFRCNSLVDLTLQMRCTLTLPISVCLQNLQKLSISGIKLVSDSSICSKDITLNFPILKVFEARGCEWPTTQNISLQVPLLEKFSIAIWNHHSNKSCKYAIKVYSRCLTDFSYEGDLEQDIVLCDSVSIRNASVVIVVDEDKKDRMEELGFRAYNLLRQIDEVEQLKLLFYKVLRHGKDIFTNLPVFGRLTYLQLNEVTGEALLQLLRNSPILNTLVLLNGVDDLHKDVFTSAILPHCFLSSFKVIQFKAFNAKEYDLGLVKFMLENAAMLEKMMISLAFWLRYEDIDLEKVKEQILSLPRCSNYCKIEFSDISSS