AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085690 MtrunA17_Chr1g0201561 97.714 175 3 1 1 174 1 175 3.62e-122 341
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085690 AT1G34000.1 65.909 176 54 5 1 174 1 172 4.95e-55 172

Find 42 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATCCTTCTCTCGAATTT+TGG 0.108201 1_2:-65952608 Msa0085690:CDS
GAATTGTGCATCATGGAAAT+TGG 0.209181 1_2:+65952412 None:intergenic
CAGAAGCCAAGTTCTGTTAT+TGG 0.242057 1_2:-65954150 Msa0085690:CDS
TCCATTGCTAATCTCATTCT+TGG 0.259463 1_2:+65954005 None:intergenic
GTGTATTTATCTTTGTTCTT+TGG 0.267188 1_2:+65954442 None:intergenic
AGCTTTATGCTGTTACTATA+AGG 0.314703 1_2:-65954287 Msa0085690:CDS
TTCTTCAGATGGGCAATGTT+TGG 0.321634 1_2:-65952689 Msa0085690:intron
AAAGGTTGAGGAAGATTAGA+TGG 0.381685 1_2:+65954210 None:intergenic
GGCTTCTGTGGTTGTGGAGG+AGG 0.386924 1_2:+65954165 None:intergenic
GAGGAAGATGAATGAGTTGT+TGG 0.427102 1_2:+65954354 None:intergenic
AATTGTGCATCATGGAAATT+GGG 0.429200 1_2:+65952413 None:intergenic
GTCTGAGCCCGTTGCAAACT+CGG 0.430085 1_2:+65952646 None:intergenic
GGTGAAGGTTTCAAAGGTTG+AGG 0.438534 1_2:+65954198 None:intergenic
TCATCTCCAATAACAGAACT+TGG 0.445908 1_2:+65954144 None:intergenic
AGGAAGATGAATGAGTTGTT+GGG 0.449866 1_2:+65954355 None:intergenic
GAACTTGGCTTCTGTGGTTG+TGG 0.451217 1_2:+65954159 None:intergenic
TTGCTAACCGAGTTTGCAAC+GGG 0.454057 1_2:-65952653 Msa0085690:CDS
GGAGGCTGAGAAGGAGGTGA+AGG 0.470690 1_2:+65954183 None:intergenic
ATAAGGAATGTTCAGAATGA+TGG 0.482112 1_2:-65954270 Msa0085690:CDS
AGATGAAGTTGAACATGAAG+AGG 0.502915 1_2:+65954335 None:intergenic
CTTGAACAAGCTGCAGATCA+AGG 0.507475 1_2:-65954048 Msa0085690:CDS
CTTGGCTTCTGTGGTTGTGG+AGG 0.510538 1_2:+65954162 None:intergenic
TATAGTAACAGCATAAAGCT+TGG 0.513051 1_2:+65954290 None:intergenic
AAAGCAAGAATTGTGCATCA+TGG 0.527473 1_2:+65952405 None:intergenic
ATAACAGAACTTGGCTTCTG+TGG 0.527549 1_2:+65954153 None:intergenic
TGTGGAGGAGGCTGAGAAGG+AGG 0.535122 1_2:+65954177 None:intergenic
GTGTTATCAAAATCAGAGGA+TGG 0.539556 1_2:+65954494 None:intergenic
TTAGATGGTTCTTTCACAGA+AGG 0.540411 1_2:+65954225 None:intergenic
TCTTTCACAGAAGGAGCCGC+TGG 0.542093 1_2:+65954234 None:intergenic
GGTTGTGGAGGAGGCTGAGA+AGG 0.543573 1_2:+65954174 None:intergenic
GTTGCTAACCGAGTTTGCAA+CGG 0.550254 1_2:-65952654 Msa0085690:CDS
AGAGGATGGGTGTGTGGACA+AGG 0.551464 1_2:+65954508 None:intergenic
CTATCCCAAAATTCGAGAGA+AGG 0.568832 1_2:+65952603 None:intergenic
GAAGGAGGTGAAGGTTTCAA+AGG 0.586451 1_2:+65954192 None:intergenic
GCCAAGAATGAGATTAGCAA+TGG 0.587710 1_2:-65954006 Msa0085690:CDS
TGCATCATGGAAATTGGGAA+AGG 0.591648 1_2:+65952418 None:intergenic
TGTTATCAAAATCAGAGGAT+GGG 0.600673 1_2:+65954495 None:intergenic
AGAATGAGATTAGCAATGGA+AGG 0.602777 1_2:-65954002 Msa0085690:intron
CATAGTGTTATCAAAATCAG+AGG 0.614036 1_2:+65954490 None:intergenic
AAAATCAGAGGATGGGTGTG+TGG 0.614445 1_2:+65954502 None:intergenic
GGAGCCGCTGGTCTTCTGAG+AGG 0.691891 1_2:+65954246 None:intergenic
TGGTCCTCTCAGAAGACCAG+CGG 0.739227 1_2:-65954250 Msa0085690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATCATTTGTTAT+AGG - chr1_2:65953194-65953213 Msa0085690:intron 10.0%
!!! AGTATTTTTTTTATCATTTA+TGG - chr1_2:65953873-65953892 Msa0085690:intron 10.0%
!!! TTTAAAATGTATAATCATTA+AGG + chr1_2:65954177-65954196 None:intergenic 10.0%
!!! TTTATTTTATCATTTGTTAT+AGG - chr1_2:65953194-65953213 Msa0085690:intron 10.0%
!!! AGTATTTTTTTTATCATTTA+TGG - chr1_2:65953873-65953892 Msa0085690:intron 10.0%
!!! TTTAAAATGTATAATCATTA+AGG + chr1_2:65954177-65954196 None:intergenic 10.0%
!!! AATTCTTTCTATTTTTGAAT+TGG - chr1_2:65952939-65952958 Msa0085690:intron 15.0%
!!! ATTCTTTCTATTTTTGAATT+GGG - chr1_2:65952940-65952959 Msa0085690:intron 15.0%
!!! AACTACAAATTATTTTCATT+TGG - chr1_2:65953718-65953737 Msa0085690:intron 15.0%
!!! ACTACAAATTATTTTCATTT+GGG - chr1_2:65953719-65953738 Msa0085690:intron 15.0%
!!! TTAGATATGATAAGTTTTTT+TGG - chr1_2:65954519-65954538 Msa0085690:five_prime_UTR 15.0%
!!! AATTCTTTCTATTTTTGAAT+TGG - chr1_2:65952939-65952958 Msa0085690:intron 15.0%
!!! ATTCTTTCTATTTTTGAATT+GGG - chr1_2:65952940-65952959 Msa0085690:intron 15.0%
!!! AACTACAAATTATTTTCATT+TGG - chr1_2:65953718-65953737 Msa0085690:intron 15.0%
!!! ACTACAAATTATTTTCATTT+GGG - chr1_2:65953719-65953738 Msa0085690:intron 15.0%
!!! TACAACTTTTTCTTTTGTTT+TGG + chr1_2:65952440-65952459 None:intergenic 20.0%
!!! TTCTTTCTATTTTTGAATTG+GGG - chr1_2:65952941-65952960 Msa0085690:intron 20.0%
!! TCCAAATTAAGATTTAAGAA+AGG + chr1_2:65952983-65953002 None:intergenic 20.0%
!! ATTAATCAGATTTACAATTC+TGG + chr1_2:65953811-65953830 None:intergenic 20.0%
!!! TACAACTTTTTCTTTTGTTT+TGG + chr1_2:65952440-65952459 None:intergenic 20.0%
!!! TTCTTTCTATTTTTGAATTG+GGG - chr1_2:65952941-65952960 Msa0085690:intron 20.0%
!! TCCAAATTAAGATTTAAGAA+AGG + chr1_2:65952983-65953002 None:intergenic 20.0%
!! ATTAATCAGATTTACAATTC+TGG + chr1_2:65953811-65953830 None:intergenic 20.0%
! GTGTATTTATCTTTGTTCTT+TGG + chr1_2:65952464-65952483 None:intergenic 25.0%
!!! ATGTTACAGACATGTTTTTT+GGG + chr1_2:65952506-65952525 None:intergenic 25.0%
! GCCTTTCTTAAATCTTAATT+TGG - chr1_2:65952979-65952998 Msa0085690:intron 25.0%
!! TGATTGTGTTTTCTTTATGT+TGG - chr1_2:65953010-65953029 Msa0085690:intron 25.0%
!!! TAGAACTAGTTAGGTTTTTT+TGG - chr1_2:65953033-65953052 Msa0085690:intron 25.0%
! CATGATTAAAGCAATAAGTT+TGG + chr1_2:65953420-65953439 None:intergenic 25.0%
! ATCTGATTAATAAGTACTTG+TGG - chr1_2:65953820-65953839 Msa0085690:intron 25.0%
! AATGGATACTTATAGAGTAA+CGG - chr1_2:65953912-65953931 Msa0085690:intron 25.0%
! TGTCTCTAATGTATGAAATA+TGG - chr1_2:65954119-65954138 Msa0085690:CDS 25.0%
! GTGTATTTATCTTTGTTCTT+TGG + chr1_2:65952464-65952483 None:intergenic 25.0%
!!! ATGTTACAGACATGTTTTTT+GGG + chr1_2:65952506-65952525 None:intergenic 25.0%
! GCCTTTCTTAAATCTTAATT+TGG - chr1_2:65952979-65952998 Msa0085690:intron 25.0%
!! TGATTGTGTTTTCTTTATGT+TGG - chr1_2:65953010-65953029 Msa0085690:intron 25.0%
!!! TAGAACTAGTTAGGTTTTTT+TGG - chr1_2:65953033-65953052 Msa0085690:intron 25.0%
! CATGATTAAAGCAATAAGTT+TGG + chr1_2:65953420-65953439 None:intergenic 25.0%
! ATCTGATTAATAAGTACTTG+TGG - chr1_2:65953820-65953839 Msa0085690:intron 25.0%
! AATGGATACTTATAGAGTAA+CGG - chr1_2:65953912-65953931 Msa0085690:intron 25.0%
! TGTCTCTAATGTATGAAATA+TGG - chr1_2:65954119-65954138 Msa0085690:CDS 25.0%
TGTTATCAAAATCAGAGGAT+GGG + chr1_2:65952411-65952430 None:intergenic 30.0%
CATAGTGTTATCAAAATCAG+AGG + chr1_2:65952416-65952435 None:intergenic 30.0%
!!! TGTTACAGACATGTTTTTTG+GGG + chr1_2:65952505-65952524 None:intergenic 30.0%
!!! GATGTTACAGACATGTTTTT+TGG + chr1_2:65952507-65952526 None:intergenic 30.0%
TATAGTAACAGCATAAAGCT+TGG + chr1_2:65952616-65952635 None:intergenic 30.0%
! AGCTTTATGCTGTTACTATA+AGG - chr1_2:65952616-65952635 Msa0085690:CDS 30.0%
ATAAGGAATGTTCAGAATGA+TGG - chr1_2:65952633-65952652 Msa0085690:CDS 30.0%
TTGGCAATGAATCCAAAAAA+GGG + chr1_2:65952882-65952901 None:intergenic 30.0%
! TTATGTTGGTAGAACTAGTT+AGG - chr1_2:65953024-65953043 Msa0085690:intron 30.0%
AATATGCTAAAAACAGCTCA+AGG + chr1_2:65953134-65953153 None:intergenic 30.0%
CATATTTCCATATGCTTTCT+AGG - chr1_2:65953148-65953167 Msa0085690:intron 30.0%
! ATGTTATCCTAGAAAGCATA+TGG + chr1_2:65953158-65953177 None:intergenic 30.0%
!! TATGCTTTCTAGGATAACAT+AGG - chr1_2:65953158-65953177 Msa0085690:intron 30.0%
AATTCACTTGTTTGTCCAAT+AGG - chr1_2:65953269-65953288 Msa0085690:intron 30.0%
! TAACTAACTGATTCTCCTAT+TGG + chr1_2:65953287-65953306 None:intergenic 30.0%
!! TAGTTAATTTTGAGTCTCTG+TGG - chr1_2:65953301-65953320 Msa0085690:intron 30.0%
AATTTGTATCAGTTGTGTTG+TGG - chr1_2:65953358-65953377 Msa0085690:intron 30.0%
!! AACACAATCTAGTTCTACAT+TGG + chr1_2:65953570-65953589 None:intergenic 30.0%
AATGTAGAACTAGATTGTGT+TGG - chr1_2:65953569-65953588 Msa0085690:intron 30.0%
ATTAGAGATGAGCTAAATGT+TGG - chr1_2:65953629-65953648 Msa0085690:intron 30.0%
GGATTATCTCTTGTTCAAAA+TGG - chr1_2:65953894-65953913 Msa0085690:intron 30.0%
ATGGATACTTATAGAGTAAC+GGG - chr1_2:65953913-65953932 Msa0085690:intron 30.0%
!!! TCAAGTGATGTTGGATTTTT+TGG + chr1_2:65953961-65953980 None:intergenic 30.0%
! TTGATAAAAAGGTGCATTGA+AGG + chr1_2:65954030-65954049 None:intergenic 30.0%
! TCAATGCACCTTTTTATCAA+AGG - chr1_2:65954030-65954049 Msa0085690:CDS 30.0%
GACTTTGTCCTTTGATAAAA+AGG + chr1_2:65954041-65954060 None:intergenic 30.0%
! ATTCTTGTTTCTTCTTCAGA+TGG - chr1_2:65954203-65954222 Msa0085690:CDS 30.0%
! TTCTTGTTTCTTCTTCAGAT+GGG - chr1_2:65954204-65954223 Msa0085690:CDS 30.0%
!!! GAATTTTGGGATAGTAGATT+TGG - chr1_2:65954309-65954328 Msa0085690:CDS 30.0%
AATTGTGCATCATGGAAATT+GGG + chr1_2:65954493-65954512 None:intergenic 30.0%
TGTTATCAAAATCAGAGGAT+GGG + chr1_2:65952411-65952430 None:intergenic 30.0%
CATAGTGTTATCAAAATCAG+AGG + chr1_2:65952416-65952435 None:intergenic 30.0%
!!! TGTTACAGACATGTTTTTTG+GGG + chr1_2:65952505-65952524 None:intergenic 30.0%
!!! GATGTTACAGACATGTTTTT+TGG + chr1_2:65952507-65952526 None:intergenic 30.0%
TATAGTAACAGCATAAAGCT+TGG + chr1_2:65952616-65952635 None:intergenic 30.0%
! AGCTTTATGCTGTTACTATA+AGG - chr1_2:65952616-65952635 Msa0085690:CDS 30.0%
ATAAGGAATGTTCAGAATGA+TGG - chr1_2:65952633-65952652 Msa0085690:CDS 30.0%
TTGGCAATGAATCCAAAAAA+GGG + chr1_2:65952882-65952901 None:intergenic 30.0%
! TTATGTTGGTAGAACTAGTT+AGG - chr1_2:65953024-65953043 Msa0085690:intron 30.0%
AATATGCTAAAAACAGCTCA+AGG + chr1_2:65953134-65953153 None:intergenic 30.0%
CATATTTCCATATGCTTTCT+AGG - chr1_2:65953148-65953167 Msa0085690:intron 30.0%
! ATGTTATCCTAGAAAGCATA+TGG + chr1_2:65953158-65953177 None:intergenic 30.0%
!! TATGCTTTCTAGGATAACAT+AGG - chr1_2:65953158-65953177 Msa0085690:intron 30.0%
AATTCACTTGTTTGTCCAAT+AGG - chr1_2:65953269-65953288 Msa0085690:intron 30.0%
! TAACTAACTGATTCTCCTAT+TGG + chr1_2:65953287-65953306 None:intergenic 30.0%
!! TAGTTAATTTTGAGTCTCTG+TGG - chr1_2:65953301-65953320 Msa0085690:intron 30.0%
AATTTGTATCAGTTGTGTTG+TGG - chr1_2:65953358-65953377 Msa0085690:intron 30.0%
!! AACACAATCTAGTTCTACAT+TGG + chr1_2:65953570-65953589 None:intergenic 30.0%
AATGTAGAACTAGATTGTGT+TGG - chr1_2:65953569-65953588 Msa0085690:intron 30.0%
ATTAGAGATGAGCTAAATGT+TGG - chr1_2:65953629-65953648 Msa0085690:intron 30.0%
GGATTATCTCTTGTTCAAAA+TGG - chr1_2:65953894-65953913 Msa0085690:intron 30.0%
ATGGATACTTATAGAGTAAC+GGG - chr1_2:65953913-65953932 Msa0085690:intron 30.0%
!!! TCAAGTGATGTTGGATTTTT+TGG + chr1_2:65953961-65953980 None:intergenic 30.0%
! TTGATAAAAAGGTGCATTGA+AGG + chr1_2:65954030-65954049 None:intergenic 30.0%
! TCAATGCACCTTTTTATCAA+AGG - chr1_2:65954030-65954049 Msa0085690:CDS 30.0%
GACTTTGTCCTTTGATAAAA+AGG + chr1_2:65954041-65954060 None:intergenic 30.0%
! ATTCTTGTTTCTTCTTCAGA+TGG - chr1_2:65954203-65954222 Msa0085690:CDS 30.0%
! TTCTTGTTTCTTCTTCAGAT+GGG - chr1_2:65954204-65954223 Msa0085690:CDS 30.0%
!!! GAATTTTGGGATAGTAGATT+TGG - chr1_2:65954309-65954328 Msa0085690:CDS 30.0%
AATTGTGCATCATGGAAATT+GGG + chr1_2:65954493-65954512 None:intergenic 30.0%
GTGTTATCAAAATCAGAGGA+TGG + chr1_2:65952412-65952431 None:intergenic 35.0%
!!! TTACAGACATGTTTTTTGGG+GGG + chr1_2:65952503-65952522 None:intergenic 35.0%
!!! GTTACAGACATGTTTTTTGG+GGG + chr1_2:65952504-65952523 None:intergenic 35.0%
!! TTGTTGGGATTTTGATGCAT+GGG + chr1_2:65952536-65952555 None:intergenic 35.0%
AGGAAGATGAATGAGTTGTT+GGG + chr1_2:65952551-65952570 None:intergenic 35.0%
AGATGAAGTTGAACATGAAG+AGG + chr1_2:65952571-65952590 None:intergenic 35.0%
TTAGATGGTTCTTTCACAGA+AGG + chr1_2:65952681-65952700 None:intergenic 35.0%
AAAGGTTGAGGAAGATTAGA+TGG + chr1_2:65952696-65952715 None:intergenic 35.0%
TCATCTCCAATAACAGAACT+TGG + chr1_2:65952762-65952781 None:intergenic 35.0%
GTTTCAGAGACAAAAAGCTA+AGG - chr1_2:65952803-65952822 Msa0085690:intron 35.0%
ACAAAAAGCTAAGGAATTGC+AGG - chr1_2:65952812-65952831 Msa0085690:intron 35.0%
CTTGGCAATGAATCCAAAAA+AGG + chr1_2:65952883-65952902 None:intergenic 35.0%
TCCATTGCTAATCTCATTCT+TGG + chr1_2:65952901-65952920 None:intergenic 35.0%
AGAATGAGATTAGCAATGGA+AGG - chr1_2:65952901-65952920 Msa0085690:intron 35.0%
! GAATTGGGGTTGATTTAAGT+TGG - chr1_2:65952955-65952974 Msa0085690:intron 35.0%
TACACAAACACTTATGTGAC+AGG - chr1_2:65953226-65953245 Msa0085690:intron 35.0%
GCTTTAATCATGTCTCCTTT+CGG - chr1_2:65953428-65953447 Msa0085690:intron 35.0%
CCATCACTATCAATTACCAA+AGG + chr1_2:65953467-65953486 None:intergenic 35.0%
!! CCTTTGGTAATTGATAGTGA+TGG - chr1_2:65953464-65953483 Msa0085690:intron 35.0%
!! TTGGTAATTGATAGTGATGG+AGG - chr1_2:65953467-65953486 Msa0085690:intron 35.0%
ATTCACATTACAACGTGTTG+TGG + chr1_2:65953694-65953713 None:intergenic 35.0%
! TCAACAAGTTTGCTTGTGTA+TGG + chr1_2:65953746-65953765 None:intergenic 35.0%
TAATGTCCAGCAAACAGTAA+TGG - chr1_2:65953770-65953789 Msa0085690:intron 35.0%
AATGTCCAGCAAACAGTAAT+GGG - chr1_2:65953771-65953790 Msa0085690:intron 35.0%
TGGATACTTATAGAGTAACG+GGG - chr1_2:65953914-65953933 Msa0085690:intron 35.0%
!!! TGTTGGATTTTTTGGTGGAT+CGG + chr1_2:65953953-65953972 None:intergenic 35.0%
!!! AGTGATGTTGGATTTTTTGG+TGG + chr1_2:65953958-65953977 None:intergenic 35.0%
!!! CAATGTTTGGTTTTGCTGTT+GGG - chr1_2:65954227-65954246 Msa0085690:CDS 35.0%
! AAGATCCTTCTCTCGAATTT+TGG - chr1_2:65954295-65954314 Msa0085690:CDS 35.0%
! AGATCCTTCTCTCGAATTTT+GGG - chr1_2:65954296-65954315 Msa0085690:CDS 35.0%
GAATTGTGCATCATGGAAAT+TGG + chr1_2:65954494-65954513 None:intergenic 35.0%
AAAGCAAGAATTGTGCATCA+TGG + chr1_2:65954501-65954520 None:intergenic 35.0%
GTGTTATCAAAATCAGAGGA+TGG + chr1_2:65952412-65952431 None:intergenic 35.0%
!!! TTACAGACATGTTTTTTGGG+GGG + chr1_2:65952503-65952522 None:intergenic 35.0%
!!! GTTACAGACATGTTTTTTGG+GGG + chr1_2:65952504-65952523 None:intergenic 35.0%
!! TTGTTGGGATTTTGATGCAT+GGG + chr1_2:65952536-65952555 None:intergenic 35.0%
AGGAAGATGAATGAGTTGTT+GGG + chr1_2:65952551-65952570 None:intergenic 35.0%
AGATGAAGTTGAACATGAAG+AGG + chr1_2:65952571-65952590 None:intergenic 35.0%
TTAGATGGTTCTTTCACAGA+AGG + chr1_2:65952681-65952700 None:intergenic 35.0%
AAAGGTTGAGGAAGATTAGA+TGG + chr1_2:65952696-65952715 None:intergenic 35.0%
TCATCTCCAATAACAGAACT+TGG + chr1_2:65952762-65952781 None:intergenic 35.0%
GTTTCAGAGACAAAAAGCTA+AGG - chr1_2:65952803-65952822 Msa0085690:intron 35.0%
ACAAAAAGCTAAGGAATTGC+AGG - chr1_2:65952812-65952831 Msa0085690:intron 35.0%
CTTGGCAATGAATCCAAAAA+AGG + chr1_2:65952883-65952902 None:intergenic 35.0%
TCCATTGCTAATCTCATTCT+TGG + chr1_2:65952901-65952920 None:intergenic 35.0%
AGAATGAGATTAGCAATGGA+AGG - chr1_2:65952901-65952920 Msa0085690:intron 35.0%
! GAATTGGGGTTGATTTAAGT+TGG - chr1_2:65952955-65952974 Msa0085690:intron 35.0%
TACACAAACACTTATGTGAC+AGG - chr1_2:65953226-65953245 Msa0085690:intron 35.0%
GCTTTAATCATGTCTCCTTT+CGG - chr1_2:65953428-65953447 Msa0085690:intron 35.0%
CCATCACTATCAATTACCAA+AGG + chr1_2:65953467-65953486 None:intergenic 35.0%
!! CCTTTGGTAATTGATAGTGA+TGG - chr1_2:65953464-65953483 Msa0085690:intron 35.0%
!! TTGGTAATTGATAGTGATGG+AGG - chr1_2:65953467-65953486 Msa0085690:intron 35.0%
ATTCACATTACAACGTGTTG+TGG + chr1_2:65953694-65953713 None:intergenic 35.0%
! TCAACAAGTTTGCTTGTGTA+TGG + chr1_2:65953746-65953765 None:intergenic 35.0%
TAATGTCCAGCAAACAGTAA+TGG - chr1_2:65953770-65953789 Msa0085690:intron 35.0%
AATGTCCAGCAAACAGTAAT+GGG - chr1_2:65953771-65953790 Msa0085690:intron 35.0%
TGGATACTTATAGAGTAACG+GGG - chr1_2:65953914-65953933 Msa0085690:intron 35.0%
!!! TGTTGGATTTTTTGGTGGAT+CGG + chr1_2:65953953-65953972 None:intergenic 35.0%
!!! AGTGATGTTGGATTTTTTGG+TGG + chr1_2:65953958-65953977 None:intergenic 35.0%
!!! CAATGTTTGGTTTTGCTGTT+GGG - chr1_2:65954227-65954246 Msa0085690:CDS 35.0%
! AAGATCCTTCTCTCGAATTT+TGG - chr1_2:65954295-65954314 Msa0085690:CDS 35.0%
! AGATCCTTCTCTCGAATTTT+GGG - chr1_2:65954296-65954315 Msa0085690:CDS 35.0%
GAATTGTGCATCATGGAAAT+TGG + chr1_2:65954494-65954513 None:intergenic 35.0%
AAAGCAAGAATTGTGCATCA+TGG + chr1_2:65954501-65954520 None:intergenic 35.0%
!! GTTGTTGGGATTTTGATGCA+TGG + chr1_2:65952537-65952556 None:intergenic 40.0%
GAGGAAGATGAATGAGTTGT+TGG + chr1_2:65952552-65952571 None:intergenic 40.0%
ATAACAGAACTTGGCTTCTG+TGG + chr1_2:65952753-65952772 None:intergenic 40.0%
CAGAAGCCAAGTTCTGTTAT+TGG - chr1_2:65952753-65952772 Msa0085690:intron 40.0%
GCCAAGAATGAGATTAGCAA+TGG - chr1_2:65952897-65952916 Msa0085690:intron 40.0%
AGTTGTGTTGTGGCGATAAT+AGG - chr1_2:65953368-65953387 Msa0085690:intron 40.0%
GGTTATCATCATAGTCCGAA+AGG + chr1_2:65953446-65953465 None:intergenic 40.0%
CGGACTATGATGATAACCTT+TGG - chr1_2:65953448-65953467 Msa0085690:intron 40.0%
TGAGCTAAATGTTGGAGTAC+TGG - chr1_2:65953637-65953656 Msa0085690:intron 40.0%
GGAGAGTTGGAAGTAACAAA+GGG + chr1_2:65953663-65953682 None:intergenic 40.0%
TTCTACCCATTACTGTTTGC+TGG + chr1_2:65953779-65953798 None:intergenic 40.0%
! ACTTATAGAGTAACGGGGAA+TGG - chr1_2:65953919-65953938 Msa0085690:intron 40.0%
CCTCAATTCTCAAGTGATGT+TGG + chr1_2:65953970-65953989 None:intergenic 40.0%
CCAACATCACTTGAGAATTG+AGG - chr1_2:65953967-65953986 Msa0085690:intron 40.0%
!!! GGGCTTTTTCGAGGTATTAT+CGG + chr1_2:65954089-65954108 None:intergenic 40.0%
ATTAGAGACACATGTCTGCT+GGG + chr1_2:65954109-65954128 None:intergenic 40.0%
TTCTTCAGATGGGCAATGTT+TGG - chr1_2:65954214-65954233 Msa0085690:CDS 40.0%
!!! GCAATGTTTGGTTTTGCTGT+TGG - chr1_2:65954226-65954245 Msa0085690:CDS 40.0%
CTATCCCAAAATTCGAGAGA+AGG + chr1_2:65954303-65954322 None:intergenic 40.0%
TGCATCATGGAAATTGGGAA+AGG + chr1_2:65954488-65954507 None:intergenic 40.0%
!! GTTGTTGGGATTTTGATGCA+TGG + chr1_2:65952537-65952556 None:intergenic 40.0%
GAGGAAGATGAATGAGTTGT+TGG + chr1_2:65952552-65952571 None:intergenic 40.0%
ATAACAGAACTTGGCTTCTG+TGG + chr1_2:65952753-65952772 None:intergenic 40.0%
CAGAAGCCAAGTTCTGTTAT+TGG - chr1_2:65952753-65952772 Msa0085690:intron 40.0%
GCCAAGAATGAGATTAGCAA+TGG - chr1_2:65952897-65952916 Msa0085690:intron 40.0%
AGTTGTGTTGTGGCGATAAT+AGG - chr1_2:65953368-65953387 Msa0085690:intron 40.0%
GGTTATCATCATAGTCCGAA+AGG + chr1_2:65953446-65953465 None:intergenic 40.0%
CGGACTATGATGATAACCTT+TGG - chr1_2:65953448-65953467 Msa0085690:intron 40.0%
TGAGCTAAATGTTGGAGTAC+TGG - chr1_2:65953637-65953656 Msa0085690:intron 40.0%
GGAGAGTTGGAAGTAACAAA+GGG + chr1_2:65953663-65953682 None:intergenic 40.0%
TTCTACCCATTACTGTTTGC+TGG + chr1_2:65953779-65953798 None:intergenic 40.0%
! ACTTATAGAGTAACGGGGAA+TGG - chr1_2:65953919-65953938 Msa0085690:intron 40.0%
CCTCAATTCTCAAGTGATGT+TGG + chr1_2:65953970-65953989 None:intergenic 40.0%
CCAACATCACTTGAGAATTG+AGG - chr1_2:65953967-65953986 Msa0085690:intron 40.0%
!!! GGGCTTTTTCGAGGTATTAT+CGG + chr1_2:65954089-65954108 None:intergenic 40.0%
ATTAGAGACACATGTCTGCT+GGG + chr1_2:65954109-65954128 None:intergenic 40.0%
TTCTTCAGATGGGCAATGTT+TGG - chr1_2:65954214-65954233 Msa0085690:CDS 40.0%
!!! GCAATGTTTGGTTTTGCTGT+TGG - chr1_2:65954226-65954245 Msa0085690:CDS 40.0%
CTATCCCAAAATTCGAGAGA+AGG + chr1_2:65954303-65954322 None:intergenic 40.0%
TGCATCATGGAAATTGGGAA+AGG + chr1_2:65954488-65954507 None:intergenic 40.0%
AAAATCAGAGGATGGGTGTG+TGG + chr1_2:65952404-65952423 None:intergenic 45.0%
GGTGAAGGTTTCAAAGGTTG+AGG + chr1_2:65952708-65952727 None:intergenic 45.0%
GAAGGAGGTGAAGGTTTCAA+AGG + chr1_2:65952714-65952733 None:intergenic 45.0%
CTTGAACAAGCTGCAGATCA+AGG - chr1_2:65952855-65952874 Msa0085690:intron 45.0%
!!! GCAGATCAAGGTCCCTTTTT+TGG - chr1_2:65952867-65952886 Msa0085690:intron 45.0%
GGGAGAGTTGGAAGTAACAA+AGG + chr1_2:65953664-65953683 None:intergenic 45.0%
CATTAGAGACACATGTCTGC+TGG + chr1_2:65954110-65954129 None:intergenic 45.0%
GTTGCTAACCGAGTTTGCAA+CGG - chr1_2:65954249-65954268 Msa0085690:CDS 45.0%
TTGCTAACCGAGTTTGCAAC+GGG - chr1_2:65954250-65954269 Msa0085690:CDS 45.0%
AAAATCAGAGGATGGGTGTG+TGG + chr1_2:65952404-65952423 None:intergenic 45.0%
GGTGAAGGTTTCAAAGGTTG+AGG + chr1_2:65952708-65952727 None:intergenic 45.0%
GAAGGAGGTGAAGGTTTCAA+AGG + chr1_2:65952714-65952733 None:intergenic 45.0%
CTTGAACAAGCTGCAGATCA+AGG - chr1_2:65952855-65952874 Msa0085690:intron 45.0%
!!! GCAGATCAAGGTCCCTTTTT+TGG - chr1_2:65952867-65952886 Msa0085690:intron 45.0%
GGGAGAGTTGGAAGTAACAA+AGG + chr1_2:65953664-65953683 None:intergenic 45.0%
CATTAGAGACACATGTCTGC+TGG + chr1_2:65954110-65954129 None:intergenic 45.0%
GTTGCTAACCGAGTTTGCAA+CGG - chr1_2:65954249-65954268 Msa0085690:CDS 45.0%
TTGCTAACCGAGTTTGCAAC+GGG - chr1_2:65954250-65954269 Msa0085690:CDS 45.0%
!! GGGGGGATTGATGATGATAC+TGG + chr1_2:65952486-65952505 None:intergenic 50.0%
GAACTTGGCTTCTGTGGTTG+TGG + chr1_2:65952747-65952766 None:intergenic 50.0%
GTTACTTCCAACTCTCCCTC+AGG - chr1_2:65953666-65953685 Msa0085690:intron 50.0%
!! AAGTCGTGAGTGCTGACACA+AGG - chr1_2:65954056-65954075 Msa0085690:CDS 50.0%
!!! ATGTCTGCTGGGCTTTTTCG+AGG + chr1_2:65954098-65954117 None:intergenic 50.0%
!! GGGGGGATTGATGATGATAC+TGG + chr1_2:65952486-65952505 None:intergenic 50.0%
GAACTTGGCTTCTGTGGTTG+TGG + chr1_2:65952747-65952766 None:intergenic 50.0%
GTTACTTCCAACTCTCCCTC+AGG - chr1_2:65953666-65953685 Msa0085690:intron 50.0%
!! AAGTCGTGAGTGCTGACACA+AGG - chr1_2:65954056-65954075 Msa0085690:CDS 50.0%
!!! ATGTCTGCTGGGCTTTTTCG+AGG + chr1_2:65954098-65954117 None:intergenic 50.0%
AGAGGATGGGTGTGTGGACA+AGG + chr1_2:65952398-65952417 None:intergenic 55.0%
TGGTCCTCTCAGAAGACCAG+CGG - chr1_2:65952653-65952672 Msa0085690:CDS 55.0%
TCTTTCACAGAAGGAGCCGC+TGG + chr1_2:65952672-65952691 None:intergenic 55.0%
CTTGGCTTCTGTGGTTGTGG+AGG + chr1_2:65952744-65952763 None:intergenic 55.0%
CAACGTGTTGTGGAGCCTGA+GGG + chr1_2:65953684-65953703 None:intergenic 55.0%
ACAACGTGTTGTGGAGCCTG+AGG + chr1_2:65953685-65953704 None:intergenic 55.0%
GTCTGAGCCCGTTGCAAACT+CGG + chr1_2:65954260-65954279 None:intergenic 55.0%
AGAGGATGGGTGTGTGGACA+AGG + chr1_2:65952398-65952417 None:intergenic 55.0%
TGGTCCTCTCAGAAGACCAG+CGG - chr1_2:65952653-65952672 Msa0085690:CDS 55.0%
TCTTTCACAGAAGGAGCCGC+TGG + chr1_2:65952672-65952691 None:intergenic 55.0%
CTTGGCTTCTGTGGTTGTGG+AGG + chr1_2:65952744-65952763 None:intergenic 55.0%
CAACGTGTTGTGGAGCCTGA+GGG + chr1_2:65953684-65953703 None:intergenic 55.0%
ACAACGTGTTGTGGAGCCTG+AGG + chr1_2:65953685-65953704 None:intergenic 55.0%
GTCTGAGCCCGTTGCAAACT+CGG + chr1_2:65954260-65954279 None:intergenic 55.0%
GGAGGCTGAGAAGGAGGTGA+AGG + chr1_2:65952723-65952742 None:intergenic 60.0%
TGTGGAGGAGGCTGAGAAGG+AGG + chr1_2:65952729-65952748 None:intergenic 60.0%
GGTTGTGGAGGAGGCTGAGA+AGG + chr1_2:65952732-65952751 None:intergenic 60.0%
GGCTTCTGTGGTTGTGGAGG+AGG + chr1_2:65952741-65952760 None:intergenic 60.0%
TGTGGAGCCTGAGGGAGAGT+TGG + chr1_2:65953676-65953695 None:intergenic 60.0%
GGAGGCTGAGAAGGAGGTGA+AGG + chr1_2:65952723-65952742 None:intergenic 60.0%
TGTGGAGGAGGCTGAGAAGG+AGG + chr1_2:65952729-65952748 None:intergenic 60.0%
GGTTGTGGAGGAGGCTGAGA+AGG + chr1_2:65952732-65952751 None:intergenic 60.0%
GGCTTCTGTGGTTGTGGAGG+AGG + chr1_2:65952741-65952760 None:intergenic 60.0%
TGTGGAGCCTGAGGGAGAGT+TGG + chr1_2:65953676-65953695 None:intergenic 60.0%
!! GGAGCCGCTGGTCTTCTGAG+AGG + chr1_2:65952660-65952679 None:intergenic 65.0%
!! GGAGCCGCTGGTCTTCTGAG+AGG + chr1_2:65952660-65952679 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 65952387 65954538 65952387 ID=Msa0085690;Name=Msa0085690
chr1_2 mRNA 65952387 65954538 65952387 ID=Msa0085690-mRNA-1;Parent=Msa0085690;Name=Msa0085690-mRNA-1;_AED=0.22;_eAED=0.22;_QI=126|1|1|1|1|1|2|202|174
chr1_2 exon 65952387 65952703 65952387 ID=Msa0085690-mRNA-1:exon:22304;Parent=Msa0085690-mRNA-1
chr1_2 exon 65954003 65954538 65954003 ID=Msa0085690-mRNA-1:exon:22303;Parent=Msa0085690-mRNA-1
chr1_2 five_prime_UTR 65954413 65954538 65954413 ID=Msa0085690-mRNA-1:five_prime_utr;Parent=Msa0085690-mRNA-1
chr1_2 CDS 65954003 65954412 65954003 ID=Msa0085690-mRNA-1:cds;Parent=Msa0085690-mRNA-1
chr1_2 CDS 65952589 65952703 65952589 ID=Msa0085690-mRNA-1:cds;Parent=Msa0085690-mRNA-1
chr1_2 three_prime_UTR 65952387 65952588 65952387 ID=Msa0085690-mRNA-1:three_prime_utr;Parent=Msa0085690-mRNA-1
Gene Sequence

>Msa0085690

ATGTCTGTAACATCTTCAATCCCATGCATCAAAATCCCAACAACTCATTCATCTTCCTCTTCATGTTCAACTTCATCTTATTCTTTTAGATTCTCTTCTTCCAAGCTTTATGCTGTTACTATAAGGAATGTTCAGAATGATGGTCCTCTCAGAAGACCAGCGGCTCCTTCTGTGAAAGAACCATCTAATCTTCCTCAACCTTTGAAACCTTCACCTCCTTCTCAGCCTCCTCCACAACCACAGAAGCCAAGTTCTGTTATTGGAGATGATAAAAGCGTTGTTTCATTAGAGTTTCAGAGACAAAAAGCTAAGGAATTGCAGGAATATTTCAAAAAGAAGAAGCTTGAACAAGCTGCAGATCAAGGTCCCTTTTTTGGATTCATTGCCAAGAATGAGATTAGCAATGGAAGATGGGCAATGTTTGGTTTTGCTGTTGGGTTGCTAACCGAGTTTGCAACGGGCTCAGACTTTGTTGATCAAGTGAAGATCCTTCTCTCGAATTTTGGGATAGTAGATTTGGATTGA

Protein sequence

>Msa0085690

MSVTSSIPCIKIPTTHSSSSSCSTSSYSFRFSSSKLYAVTIRNVQNDGPLRRPAAPSVKEPSNLPQPLKPSPPSQPPPQPQKPSSVIGDDKSVVSLEFQRQKAKELQEYFKKKKLEQAADQGPFFGFIAKNEISNGRWAMFGFAVGLLTEFATGSDFVDQVKILLSNFGIVDLD*