AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0048920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048920 MtrunA17_Chr4g0026241 96.117 206 7 1 1 206 1 205 3.60e-146 404
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048920 AT3G44380.1 67.598 179 58 0 5 183 6 184 4.48e-83 244

Find 86 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTACAAACTTACGAAATA+AGG 0.225859 1_2:-2015971 None:intergenic
AGTGAAAACGTGGTCAAATT+TGG 0.233053 1_2:-2015997 None:intergenic
TAACTCTCACTTTAAACTTA+TGG 0.256093 1_2:-2013746 None:intergenic
AGGTGGAATGTTGGGTCTTT+TGG 0.258820 1_2:-2013387 None:intergenic
TTTACTGTTTGAAATGCTTT+TGG 0.258972 1_2:+2016024 Msa0048920:three_prime_UTR
GTGATGGTGTTGTTGTTATA+TGG 0.327349 1_2:-2013095 None:intergenic
ACGGAGGAAGGATGAAATTA+AGG 0.329845 1_2:-2012995 None:intergenic
ACTGCACAACTTGAACTCTT+TGG 0.363523 1_2:+2013822 Msa0048920:CDS
TTTACAAACTTACGAAATAA+GGG 0.378352 1_2:-2015970 None:intergenic
AGAACTTCTGCGTCTACAAC+GGG 0.388729 1_2:-2013447 None:intergenic
GTTGAGTTAAGATTCTTGAT+TGG 0.393041 1_2:+2016121 Msa0048920:three_prime_UTR
TAGTTGATTGGGGCTATGTT+TGG 0.400386 1_2:-2013492 None:intergenic
GATGCGGCTGTTGATATTGC+TGG 0.402057 1_2:+2013699 Msa0048920:CDS
TTGTTATATGGTTATTATTG+TGG 0.419717 1_2:-2013083 None:intergenic
TAACGACTTTACAAGCTTTG+AGG 0.428220 1_2:+2016099 Msa0048920:three_prime_UTR
GGCTGAGACCCGGCTTGGAC+AGG 0.429344 1_2:-2013567 None:intergenic
GTTGTTGAAGAGTAGTTGAT+TGG 0.439944 1_2:-2013504 None:intergenic
TTCTACGAAGGTTCTCTCCT+CGG 0.440988 1_2:+2013537 Msa0048920:CDS
GGTTCAGCTCCTGTCCAAGC+CGG 0.442027 1_2:+2013558 Msa0048920:CDS
TTCCCTTACAGCTCTATACT+AGG 0.444135 1_2:-2016069 None:intergenic
AGCTGGACATCAGCAATAAT+AGG 0.444898 1_2:+2013321 Msa0048920:CDS
TTGAGATGAGGTGGAATGTT+GGG 0.453056 1_2:-2013395 None:intergenic
GAAGCCATGAGTTTGGTGTT+TGG 0.457305 1_2:-2013168 None:intergenic
AGAAAAGAATGGACGGAGGA+AGG 0.463692 1_2:-2013007 None:intergenic
GTTCAGCTCCTGTCCAAGCC+GGG 0.468167 1_2:+2013559 Msa0048920:CDS
ACATCTCAGCTCCTCAGAAC+CGG 0.474289 1_2:+2013205 Msa0048920:five_prime_UTR
CAACTTGAACTCTTTGGCTC+AGG 0.480208 1_2:+2013828 Msa0048920:CDS
AATTAAGGATAATGCGTTTG+AGG 0.485940 1_2:-2012980 None:intergenic
GCGTCTACAACGGGGAGGCT+TGG 0.496927 1_2:-2013438 None:intergenic
GATTGGGGCTATGTTTGGAT+TGG 0.499436 1_2:-2013487 None:intergenic
TCGGTGGCTGAGACCCGGCT+TGG 0.502166 1_2:-2013572 None:intergenic
TTGTTGAAGAGTAGTTGATT+GGG 0.503825 1_2:-2013503 None:intergenic
GTGCTAGGAAGCCATGAGTT+TGG 0.507496 1_2:-2013175 None:intergenic
GGGAATGATTGTATTGGTAA+AGG 0.514283 1_2:-2013034 None:intergenic
GGCAAAGGGAATGATTGTAT+TGG 0.519499 1_2:-2013040 None:intergenic
CGGCTCGGCTTAAAGCTCTT+CGG 0.519771 1_2:+2013619 Msa0048920:CDS
AAAAGAGGTCACAATGGAGC+TGG 0.519825 1_2:+2013304 Msa0048920:CDS
TTCCCTTTGCCTCTCATAGT+CGG 0.523144 1_2:+2013052 Msa0048920:five_prime_UTR
GCCCCTAGTATAGAGCTGTA+AGG 0.524647 1_2:+2016066 Msa0048920:three_prime_UTR
CGAAGAGCTTTAAGCCGAGC+CGG 0.530739 1_2:-2013618 None:intergenic
TCCCTTACAGCTCTATACTA+GGG 0.534035 1_2:-2016068 None:intergenic
CCCCTAGTATAGAGCTGTAA+GGG 0.534430 1_2:+2016067 Msa0048920:three_prime_UTR
TCGCCACGTCAGACATTACT+CGG 0.536903 1_2:-2013659 None:intergenic
ATGTCAGTTACTGAGACTTC+CGG 0.538438 1_2:+2013599 Msa0048920:CDS
GTAAAGGAGGAAGAAAAGAA+TGG 0.544660 1_2:-2013018 None:intergenic
AATGATTGTATTGGTAAAGG+AGG 0.551508 1_2:-2013031 None:intergenic
GATGATGAGTTGGCAGGTGA+AGG 0.551759 1_2:+2015741 Msa0048920:CDS
ATTGAGATGAGGTGGAATGT+TGG 0.554077 1_2:-2013396 None:intergenic
GTGTTAACCCTCCGGTTCTG+AGG 0.555034 1_2:-2013216 None:intergenic
GCACCGACTATGAGAGGCAA+AGG 0.556990 1_2:-2013055 None:intergenic
TGAAGTTGATTGAGATGAGG+TGG 0.561080 1_2:-2013404 None:intergenic
TATGCAAGTAGATGATGAGT+TGG 0.566187 1_2:+2015731 Msa0048920:intron
AGGAGGAAGAAAAGAATGGA+CGG 0.577208 1_2:-2013014 None:intergenic
AGTTACTGAGACTTCCGGCT+CGG 0.580095 1_2:+2013604 Msa0048920:CDS
TGAGATGTATCTGAAGTGCT+AGG 0.586842 1_2:-2013190 None:intergenic
TGTTGAAGAGTAGTTGATTG+GGG 0.588353 1_2:-2013502 None:intergenic
AGGAAGAAAAGAATGGACGG+AGG 0.588813 1_2:-2013011 None:intergenic
TACACCAAACACCAAACTCA+TGG 0.599095 1_2:+2013164 Msa0048920:five_prime_UTR
AAGAACTTCTGCGTCTACAA+CGG 0.599919 1_2:-2013448 None:intergenic
ATGTCACATGATCTCAAAGT+CGG 0.602542 1_2:-2015897 None:intergenic
TGACCTCGGTGGCTGAGACC+CGG 0.603018 1_2:-2013577 None:intergenic
GTCATTGCACCGACTATGAG+AGG 0.603941 1_2:-2013061 None:intergenic
GTATGAGATTGTGATGGATG+TGG 0.605181 1_2:-2013134 None:intergenic
CACCGACTATGAGAGGCAAA+GGG 0.606633 1_2:-2013054 None:intergenic
CAAGTAGATGATGAGTTGGC+AGG 0.612414 1_2:+2015735 Msa0048920:intron
GTTTGGATTGGTGACATGAA+CGG 0.614061 1_2:-2013475 None:intergenic
ATATGAATTATTATGTGTGA+TGG 0.620244 1_2:-2013111 None:intergenic
TCTCAGCTCCTCAGAACCGG+AGG 0.634975 1_2:+2013208 Msa0048920:five_prime_UTR
CCCTTACAGCTCTATACTAG+GGG 0.636040 1_2:-2016067 None:intergenic
CTCAGTAACTGACATGACCT+CGG 0.639739 1_2:-2013591 None:intergenic
CTTGGACAGGAGCTGAACCG+AGG 0.641650 1_2:-2013554 None:intergenic
AATTGAGTATGAGATTGTGA+TGG 0.645677 1_2:-2013140 None:intergenic
TGAAACTGAAGCAAAAGCTG+AGG 0.653198 1_2:+2015776 Msa0048920:CDS
CTCAGCTCCTCAGAACCGGA+GGG 0.664025 1_2:+2013209 Msa0048920:five_prime_UTR
AAGTGAAGTTGATTGAGATG+AGG 0.676539 1_2:-2013407 None:intergenic
GAGCCGAGTAATGTCTGACG+TGG 0.684373 1_2:+2013656 Msa0048920:CDS
ACGTGAGATGGTTCTTGATG+CGG 0.689072 1_2:+2013683 Msa0048920:CDS
TGACGTGGCGAAACGTGAGA+TGG 0.689628 1_2:+2013671 Msa0048920:CDS
GTCCCACCACAAAACTCTAG+CGG 0.692849 1_2:-2013724 None:intergenic
ACCTTCGTAGAAAATTGACA+TGG 0.695121 1_2:-2013526 None:intergenic
GAGTTGGCAGGTGAAGGTGA+AGG 0.709725 1_2:+2015747 Msa0048920:CDS
AGTAAAACATAGTGAAAACG+TGG 0.721954 1_2:-2016007 None:intergenic
AAGCCGGGTCTCAGCCACCG+AGG 0.724149 1_2:+2013574 Msa0048920:CDS
CTTCTGCGTCTACAACGGGG+AGG 0.732058 1_2:-2013443 None:intergenic
AGTAACTGACATGACCTCGG+TGG 0.742599 1_2:-2013588 None:intergenic
GAACTTCTGCGTCTACAACG+GGG 0.764589 1_2:-2013446 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTATAATTTTTTATTAG+TGG - chr1_2:2015514-2015533 None:intergenic 10.0%
!!! AATAATTTTAAAAGTTGAAC+AGG + chr1_2:2015574-2015593 Msa0048920:intron 15.0%
!!! ATTTAAAGTTGAGATATTTT+AGG + chr1_2:2015873-2015892 Msa0048920:three_prime_UTR 15.0%
!! TTGTTATATGGTTATTATTG+TGG - chr1_2:2013086-2013105 None:intergenic 20.0%
!! ATATGAATTATTATGTGTGA+TGG - chr1_2:2013114-2013133 None:intergenic 20.0%
!! CGAAATAATCAAACAAATTA+TGG - chr1_2:2014127-2014146 None:intergenic 20.0%
!!! ATATTATTGTGTTGATGTAA+TGG + chr1_2:2014191-2014210 Msa0048920:intron 20.0%
!!! TATTATTGTGTTGATGTAAT+GGG + chr1_2:2014192-2014211 Msa0048920:intron 20.0%
!!! AATTTTCAACACAACAAATA+CGG - chr1_2:2014570-2014589 None:intergenic 20.0%
!! TATAAAAAGAAAAACTTAGC+CGG - chr1_2:2014720-2014739 None:intergenic 20.0%
!! TAGAAGAAAAAAAACAATGA+AGG - chr1_2:2015186-2015205 None:intergenic 20.0%
!! AGAATGTAAAATTTCTAAAC+CGG + chr1_2:2015532-2015551 Msa0048920:intron 20.0%
!! TCAAAGATAAAATGAGTAAA+GGG - chr1_2:2015660-2015679 None:intergenic 20.0%
!! TTTACAAACTTACGAAATAA+GGG - chr1_2:2015973-2015992 None:intergenic 20.0%
!! ATTTACAAACTTACGAAATA+AGG - chr1_2:2015974-2015993 None:intergenic 20.0%
!! CAACAAAACTAATCTTTTCA+TGG + chr1_2:2013275-2013294 Msa0048920:exon 25.0%
! TAACTCTCACTTTAAACTTA+TGG - chr1_2:2013749-2013768 None:intergenic 25.0%
! TCAATAACATCAAGAAAAAC+AGG - chr1_2:2013792-2013811 None:intergenic 25.0%
!! TTTTCTTGATGTTATTGATC+AGG + chr1_2:2013794-2013813 Msa0048920:CDS 25.0%
! CAAATTAAGCATAGAAAAAG+TGG + chr1_2:2013886-2013905 Msa0048920:intron 25.0%
! AGCACAAAACATTAAAAACA+GGG - chr1_2:2013987-2014006 None:intergenic 25.0%
! AAGCACAAAACATTAAAAAC+AGG - chr1_2:2013988-2014007 None:intergenic 25.0%
! TTTATACGTAGGATGTATAT+TGG + chr1_2:2014294-2014313 Msa0048920:intron 25.0%
! AAATCATCCTACAAATGTTA+AGG - chr1_2:2014358-2014377 None:intergenic 25.0%
!!! TGCTATTGATTTCTCATAAT+GGG - chr1_2:2015130-2015149 None:intergenic 25.0%
!!! TTGCTATTGATTTCTCATAA+TGG - chr1_2:2015131-2015150 None:intergenic 25.0%
! AAGAAAAAAAACAATGAAGG+CGG - chr1_2:2015183-2015202 None:intergenic 25.0%
!! TTTAAACGGTTATTGGTTAA+GGG - chr1_2:2015290-2015309 None:intergenic 25.0%
!!! AATTTTAAAAGTTGAACAGG+TGG + chr1_2:2015577-2015596 Msa0048920:intron 25.0%
! CAAAGATAAAATGAGTAAAG+GGG - chr1_2:2015659-2015678 None:intergenic 25.0%
! CTCAAAGATAAAATGAGTAA+AGG - chr1_2:2015661-2015680 None:intergenic 25.0%
!!! TTTACTGTTTGAAATGCTTT+TGG + chr1_2:2016024-2016043 Msa0048920:three_prime_UTR 25.0%
!!! TTACTGTTTGAAATGCTTTT+GGG + chr1_2:2016025-2016044 Msa0048920:three_prime_UTR 25.0%
AATTAAGGATAATGCGTTTG+AGG - chr1_2:2012983-2013002 None:intergenic 30.0%
! AATGATTGTATTGGTAAAGG+AGG - chr1_2:2013034-2013053 None:intergenic 30.0%
AATTGAGTATGAGATTGTGA+TGG - chr1_2:2013143-2013162 None:intergenic 30.0%
!!! TTTTTTTTGTGTTAACCCTC+CGG - chr1_2:2013227-2013246 None:intergenic 30.0%
! TTTTCATGGAAGAGAAAAAG+AGG + chr1_2:2013289-2013308 Msa0048920:exon 30.0%
TTGTTGAAGAGTAGTTGATT+GGG - chr1_2:2013506-2013525 None:intergenic 30.0%
!! AAAAAGTGGTGTGATTTGTT+AGG + chr1_2:2013900-2013919 Msa0048920:intron 30.0%
! ATTTGTTAGGTTTGGGAAAT+TGG + chr1_2:2013913-2013932 Msa0048920:intron 30.0%
AAAAATCAAAACGTGACGTT+AGG - chr1_2:2013946-2013965 None:intergenic 30.0%
TAATGGGATATTCATAGTCT+CGG + chr1_2:2014208-2014227 Msa0048920:intron 30.0%
TTACACGTGTATTTATACGT+AGG + chr1_2:2014283-2014302 Msa0048920:intron 30.0%
AATCTTCTTTGATTCAATCG+CGG - chr1_2:2014328-2014347 None:intergenic 30.0%
TGAATCAAAGAAGATTGATG+TGG + chr1_2:2014332-2014351 Msa0048920:intron 30.0%
TGAATTAAAGAGTTTCGTCA+AGG - chr1_2:2014430-2014449 None:intergenic 30.0%
TGACGAAACTCTTTAATTCA+TGG + chr1_2:2014430-2014449 Msa0048920:intron 30.0%
GACGAAACTCTTTAATTCAT+GGG + chr1_2:2014431-2014450 Msa0048920:intron 30.0%
!! GCATTTTAATGAAAATGACG+TGG - chr1_2:2014683-2014702 None:intergenic 30.0%
TAAAATATCATGCAGTGCAA+AGG - chr1_2:2014877-2014896 None:intergenic 30.0%
GCACAACAGTATTATAAACA+CGG + chr1_2:2014897-2014916 Msa0048920:intron 30.0%
TCAATAGAATTCCATGAGAT+TGG + chr1_2:2014922-2014941 Msa0048920:intron 30.0%
CAATAGAATTCCATGAGATT+GGG + chr1_2:2014923-2014942 Msa0048920:intron 30.0%
!! TTGTCTTGTTCGATAACTTT+TGG + chr1_2:2015076-2015095 Msa0048920:intron 30.0%
! ATTGATTTCTCATAATGGGA+TGG - chr1_2:2015126-2015145 None:intergenic 30.0%
GAAATCAATAGCAATTCCAA+TGG + chr1_2:2015137-2015156 Msa0048920:intron 30.0%
AGAGCTTAAGTAGTTATTGA+TGG - chr1_2:2015218-2015237 None:intergenic 30.0%
! GTTTAAACGGTTATTGGTTA+AGG - chr1_2:2015291-2015310 None:intergenic 30.0%
ATCTTGGTTTAAACGGTTAT+TGG - chr1_2:2015297-2015316 None:intergenic 30.0%
TTGACAGATCTTGGTTTAAA+CGG - chr1_2:2015304-2015323 None:intergenic 30.0%
AGTAAAACATAGTGAAAACG+TGG - chr1_2:2016010-2016029 None:intergenic 30.0%
!! TACTGTTTGAAATGCTTTTG+GGG + chr1_2:2016026-2016045 Msa0048920:three_prime_UTR 30.0%
GTTGAGTTAAGATTCTTGAT+TGG + chr1_2:2016121-2016140 Msa0048920:three_prime_UTR 30.0%
GTAAAGGAGGAAGAAAAGAA+TGG - chr1_2:2013021-2013040 None:intergenic 35.0%
! GGGAATGATTGTATTGGTAA+AGG - chr1_2:2013037-2013056 None:intergenic 35.0%
!! GTGATGGTGTTGTTGTTATA+TGG - chr1_2:2013098-2013117 None:intergenic 35.0%
AAGAGAAAAAGAGGTCACAA+TGG + chr1_2:2013298-2013317 Msa0048920:CDS 35.0%
! AAGTGAAGTTGATTGAGATG+AGG - chr1_2:2013410-2013429 None:intergenic 35.0%
TGTTGAAGAGTAGTTGATTG+GGG - chr1_2:2013505-2013524 None:intergenic 35.0%
GTTGTTGAAGAGTAGTTGAT+TGG - chr1_2:2013507-2013526 None:intergenic 35.0%
! ACCATGTCAATTTTCTACGA+AGG + chr1_2:2013525-2013544 Msa0048920:CDS 35.0%
ACCTTCGTAGAAAATTGACA+TGG - chr1_2:2013529-2013548 None:intergenic 35.0%
!! TGGTGTGATTTGTTAGGTTT+GGG + chr1_2:2013906-2013925 Msa0048920:intron 35.0%
GCTTCTCAAGTTTGAATTGT+AGG + chr1_2:2014004-2014023 Msa0048920:intron 35.0%
ATACGTAGGATGTATATTGG+AGG + chr1_2:2014297-2014316 Msa0048920:intron 35.0%
CTGCACAATCTAGGTTAATA+CGG - chr1_2:2014477-2014496 None:intergenic 35.0%
!! AATGCCATTTAACTTGCAAC+CGG + chr1_2:2014698-2014717 Msa0048920:intron 35.0%
TGACTGTAACTAGTGATTTG+AGG - chr1_2:2014796-2014815 None:intergenic 35.0%
TCACTAGTTACAGTCATTAG+TGG + chr1_2:2014800-2014819 Msa0048920:intron 35.0%
AAAAAAAACAATGAAGGCGG+TGG - chr1_2:2015180-2015199 None:intergenic 35.0%
TGAGTAGTGATGTTCTGTTA+TGG - chr1_2:2015259-2015278 None:intergenic 35.0%
TGGTTATAGAAGATGTTGCA+GGG - chr1_2:2015334-2015353 None:intergenic 35.0%
TTCTATAACCAGGTGTGTTA+AGG + chr1_2:2015343-2015362 Msa0048920:intron 35.0%
AGAATGAAAAGAAAAGGCCA+TGG - chr1_2:2015374-2015393 None:intergenic 35.0%
! TTTTCTTTTCATTCTCACCG+CGG + chr1_2:2015379-2015398 Msa0048920:intron 35.0%
ACAGATTCGATGGTGTATAT+GGG - chr1_2:2015416-2015435 None:intergenic 35.0%
TGTCACAAAACAAATGGCTA+AGG - chr1_2:2015445-2015464 None:intergenic 35.0%
AATTTCTAAACCGGTTGACT+CGG + chr1_2:2015541-2015560 Msa0048920:intron 35.0%
! ACCTTCATTTGTTTCTCATG+TGG + chr1_2:2015692-2015711 Msa0048920:intron 35.0%
! CCTTCATTTGTTTCTCATGT+GGG + chr1_2:2015693-2015712 Msa0048920:intron 35.0%
TATGCAAGTAGATGATGAGT+TGG + chr1_2:2015731-2015750 Msa0048920:intron 35.0%
ATGTCACATGATCTCAAAGT+CGG - chr1_2:2015900-2015919 None:intergenic 35.0%
AGTGAAAACGTGGTCAAATT+TGG - chr1_2:2016000-2016019 None:intergenic 35.0%
TAACGACTTTACAAGCTTTG+AGG + chr1_2:2016099-2016118 Msa0048920:three_prime_UTR 35.0%
ACGGAGGAAGGATGAAATTA+AGG - chr1_2:2012998-2013017 None:intergenic 40.0%
AGGAGGAAGAAAAGAATGGA+CGG - chr1_2:2013017-2013036 None:intergenic 40.0%
GGCAAAGGGAATGATTGTAT+TGG - chr1_2:2013043-2013062 None:intergenic 40.0%
!! GTATGAGATTGTGATGGATG+TGG - chr1_2:2013137-2013156 None:intergenic 40.0%
TACACCAAACACCAAACTCA+TGG + chr1_2:2013164-2013183 Msa0048920:five_prime_UTR 40.0%
! TGAGATGTATCTGAAGTGCT+AGG - chr1_2:2013193-2013212 None:intergenic 40.0%
AGCTGGACATCAGCAATAAT+AGG + chr1_2:2013321-2013340 Msa0048920:CDS 40.0%
TTGAGATGAGGTGGAATGTT+GGG - chr1_2:2013398-2013417 None:intergenic 40.0%
ATTGAGATGAGGTGGAATGT+TGG - chr1_2:2013399-2013418 None:intergenic 40.0%
! TGAAGTTGATTGAGATGAGG+TGG - chr1_2:2013407-2013426 None:intergenic 40.0%
AAGAACTTCTGCGTCTACAA+CGG - chr1_2:2013451-2013470 None:intergenic 40.0%
!! GTTTGGATTGGTGACATGAA+CGG - chr1_2:2013478-2013497 None:intergenic 40.0%
TAGTTGATTGGGGCTATGTT+TGG - chr1_2:2013495-2013514 None:intergenic 40.0%
ATGTCAGTTACTGAGACTTC+CGG + chr1_2:2013599-2013618 Msa0048920:CDS 40.0%
ACTGCACAACTTGAACTCTT+TGG + chr1_2:2013822-2013841 Msa0048920:CDS 40.0%
!! GTGGTGTGATTTGTTAGGTT+TGG + chr1_2:2013905-2013924 Msa0048920:intron 40.0%
! GATGTGGCCTTAACATTTGT+AGG + chr1_2:2014348-2014367 Msa0048920:intron 40.0%
GTAAATGTAGCGTACCTTTG+AGG + chr1_2:2014381-2014400 Msa0048920:intron 40.0%
CGTATTAACCTAGATTGTGC+AGG + chr1_2:2014475-2014494 Msa0048920:intron 40.0%
TATGTGATCCTGCACAATCT+AGG - chr1_2:2014486-2014505 None:intergenic 40.0%
TTGAACACTTCCCCTGTTAT+TGG + chr1_2:2014656-2014675 Msa0048920:intron 40.0%
AATGACGTGGACCAATAACA+GGG - chr1_2:2014670-2014689 None:intergenic 40.0%
AAATGACGTGGACCAATAAC+AGG - chr1_2:2014671-2014690 None:intergenic 40.0%
TTAGCCGGTTGCAAGTTAAA+TGG - chr1_2:2014705-2014724 None:intergenic 40.0%
GATTTGAGGAAAACGATGAG+TGG - chr1_2:2014782-2014801 None:intergenic 40.0%
AATTCCATGAGATTGGGTGA+GGG + chr1_2:2014929-2014948 Msa0048920:intron 40.0%
ACCAACACATTCCATCAACA+TGG + chr1_2:2015050-2015069 Msa0048920:intron 40.0%
! ACCATGTTGATGGAATGTGT+TGG - chr1_2:2015054-2015073 None:intergenic 40.0%
CAAGACAAACACCATGTTGA+TGG - chr1_2:2015064-2015083 None:intergenic 40.0%
TGATTGGAGAAGAAGACCAT+TGG - chr1_2:2015156-2015175 None:intergenic 40.0%
ATGTTCTGTTATGGAGAGGT+TGG - chr1_2:2015250-2015269 None:intergenic 40.0%
AGTGATGTTCTGTTATGGAG+AGG - chr1_2:2015254-2015273 None:intergenic 40.0%
! GGTTATTGGTTAAGGGCTTA+GGG - chr1_2:2015283-2015302 None:intergenic 40.0%
GGCTCATAATTGACAGATCT+TGG - chr1_2:2015313-2015332 None:intergenic 40.0%
CTGGTTATAGAAGATGTTGC+AGG - chr1_2:2015335-2015354 None:intergenic 40.0%
CTGCAACATCTTCTATAACC+AGG + chr1_2:2015333-2015352 Msa0048920:intron 40.0%
GCGGTGAGAATGAAAAGAAA+AGG - chr1_2:2015380-2015399 None:intergenic 40.0%
! TTTCTTTTCATTCTCACCGC+GGG + chr1_2:2015380-2015399 Msa0048920:intron 40.0%
ATTCGATGGTGTATATGGGT+CGG - chr1_2:2015412-2015431 None:intergenic 40.0%
GACAGATTCGATGGTGTATA+TGG - chr1_2:2015417-2015436 None:intergenic 40.0%
AAGGTTCATGACAGATTCGA+TGG - chr1_2:2015426-2015445 None:intergenic 40.0%
CTCACGTGTCACAAAACAAA+TGG - chr1_2:2015451-2015470 None:intergenic 40.0%
! TACTTGTTAACCGAGTCAAC+CGG - chr1_2:2015554-2015573 None:intergenic 40.0%
ATGAGTAAAGGGGAATGCTA+AGG - chr1_2:2015649-2015668 None:intergenic 40.0%
CCCACATGAGAAACAAATGA+AGG - chr1_2:2015696-2015715 None:intergenic 40.0%
TGAAACTGAAGCAAAAGCTG+AGG + chr1_2:2015776-2015795 Msa0048920:CDS 40.0%
!!! TGAAATGCTTTTGGGGTGAA+TGG + chr1_2:2016033-2016052 Msa0048920:three_prime_UTR 40.0%
TCCCTTACAGCTCTATACTA+GGG - chr1_2:2016071-2016090 None:intergenic 40.0%
TTCCCTTACAGCTCTATACT+AGG - chr1_2:2016072-2016091 None:intergenic 40.0%
AGAAAAGAATGGACGGAGGA+AGG - chr1_2:2013010-2013029 None:intergenic 45.0%
AGGAAGAAAAGAATGGACGG+AGG - chr1_2:2013014-2013033 None:intergenic 45.0%
TTCCCTTTGCCTCTCATAGT+CGG + chr1_2:2013052-2013071 Msa0048920:five_prime_UTR 45.0%
!! GAAGCCATGAGTTTGGTGTT+TGG - chr1_2:2013171-2013190 None:intergenic 45.0%
AAAAGAGGTCACAATGGAGC+TGG + chr1_2:2013304-2013323 Msa0048920:CDS 45.0%
! AGGTGGAATGTTGGGTCTTT+TGG - chr1_2:2013390-2013409 None:intergenic 45.0%
AGAACTTCTGCGTCTACAAC+GGG - chr1_2:2013450-2013469 None:intergenic 45.0%
GATTGGGGCTATGTTTGGAT+TGG - chr1_2:2013490-2013509 None:intergenic 45.0%
TTCTACGAAGGTTCTCTCCT+CGG + chr1_2:2013537-2013556 Msa0048920:CDS 45.0%
CTCAGTAACTGACATGACCT+CGG - chr1_2:2013594-2013613 None:intergenic 45.0%
ACGTGAGATGGTTCTTGATG+CGG + chr1_2:2013683-2013702 Msa0048920:CDS 45.0%
! CAACTTGAACTCTTTGGCTC+AGG + chr1_2:2013828-2013847 Msa0048920:CDS 45.0%
! TTGAACTCTTTGGCTCAGGT+CGG + chr1_2:2013832-2013851 Msa0048920:intron 45.0%
CATAGTCTCGGATATGTGCA+AGG + chr1_2:2014220-2014239 Msa0048920:intron 45.0%
GGTACTCTAGATAGAGTCGA+CGG + chr1_2:2014241-2014260 Msa0048920:intron 45.0%
!! AGCGTACCTTTGAGGTGTTT+CGG + chr1_2:2014389-2014408 Msa0048920:intron 45.0%
ATGACGTGGACCAATAACAG+GGG - chr1_2:2014669-2014688 None:intergenic 45.0%
GTCAAGCTCGGAGAAATCAT+GGG + chr1_2:2014837-2014856 Msa0048920:intron 45.0%
GAATTCCATGAGATTGGGTG+AGG + chr1_2:2014928-2014947 Msa0048920:intron 45.0%
! ATGAGATTGGGTGAGGGTAT+GGG + chr1_2:2014935-2014954 Msa0048920:intron 45.0%
! CGGTTATTGGTTAAGGGCTT+AGG - chr1_2:2015284-2015303 None:intergenic 45.0%
ACACGTGAGACTGAATGAAG+AGG + chr1_2:2015462-2015481 Msa0048920:intron 45.0%
GTGAGACTGAATGAAGAGGT+GGG + chr1_2:2015466-2015485 Msa0048920:intron 45.0%
TGAGACTGAATGAAGAGGTG+GGG + chr1_2:2015467-2015486 Msa0048920:intron 45.0%
! CAAGTAGATGATGAGTTGGC+AGG + chr1_2:2015735-2015754 Msa0048920:intron 45.0%
CCCTTACAGCTCTATACTAG+GGG - chr1_2:2016070-2016089 None:intergenic 45.0%
CCCCTAGTATAGAGCTGTAA+GGG + chr1_2:2016067-2016086 Msa0048920:three_prime_UTR 45.0%
!!! TTTTATAATTTTTTATTAGT+GGG - chr1_2:2015513-2015532 None:intergenic 5.0%
! CACCGACTATGAGAGGCAAA+GGG - chr1_2:2013057-2013076 None:intergenic 50.0%
!! GTCATTGCACCGACTATGAG+AGG - chr1_2:2013064-2013083 None:intergenic 50.0%
GTGCTAGGAAGCCATGAGTT+TGG - chr1_2:2013178-2013197 None:intergenic 50.0%
ACATCTCAGCTCCTCAGAAC+CGG + chr1_2:2013205-2013224 Msa0048920:five_prime_UTR 50.0%
!!! AACGGGGAGGCTTGGTTTTA+AGG - chr1_2:2013433-2013452 None:intergenic 50.0%
GAACTTCTGCGTCTACAACG+GGG - chr1_2:2013449-2013468 None:intergenic 50.0%
AGTAACTGACATGACCTCGG+TGG - chr1_2:2013591-2013610 None:intergenic 50.0%
AGTTACTGAGACTTCCGGCT+CGG + chr1_2:2013604-2013623 Msa0048920:CDS 50.0%
TCGCCACGTCAGACATTACT+CGG - chr1_2:2013662-2013681 None:intergenic 50.0%
GATGCGGCTGTTGATATTGC+TGG + chr1_2:2013699-2013718 Msa0048920:CDS 50.0%
!! CACCGCTAGAGTTTTGTGGT+GGG + chr1_2:2013722-2013741 Msa0048920:CDS 50.0%
GTCCCACCACAAAACTCTAG+CGG - chr1_2:2013727-2013746 None:intergenic 50.0%
!! TACCTTTGAGGTGTTTCGGC+TGG + chr1_2:2014393-2014412 Msa0048920:intron 50.0%
ATCCAGCCGAAACACCTCAA+AGG - chr1_2:2014398-2014417 None:intergenic 50.0%
ACCGCTTTCATCGTCAAGCT+CGG + chr1_2:2014825-2014844 Msa0048920:intron 50.0%
TCCGAGCTTGACGATGAAAG+CGG - chr1_2:2014829-2014848 None:intergenic 50.0%
CGTCAAGCTCGGAGAAATCA+TGG + chr1_2:2014836-2014855 Msa0048920:intron 50.0%
CATACCCTCACCCAATCTCA+TGG - chr1_2:2014936-2014955 None:intergenic 50.0%
CATGAGATTGGGTGAGGGTA+TGG + chr1_2:2014934-2014953 Msa0048920:intron 50.0%
CAATGAAGGCGGTGGTTGAT+TGG - chr1_2:2015172-2015191 None:intergenic 50.0%
!! TGGAAGCACCTTAACACACC+TGG - chr1_2:2015354-2015373 None:intergenic 50.0%
! GGTGTGTTAAGGTGCTTCCA+TGG + chr1_2:2015354-2015373 Msa0048920:intron 50.0%
CGTGAGACTGAATGAAGAGG+TGG + chr1_2:2015465-2015484 Msa0048920:intron 50.0%
ACAGATGCGCGTGTGTTAGA+TGG + chr1_2:2015604-2015623 Msa0048920:intron 50.0%
! GATGATGAGTTGGCAGGTGA+AGG + chr1_2:2015741-2015760 Msa0048920:CDS 50.0%
GCCCCTAGTATAGAGCTGTA+AGG + chr1_2:2016066-2016085 Msa0048920:three_prime_UTR 50.0%
!! GCACCGACTATGAGAGGCAA+AGG - chr1_2:2013058-2013077 None:intergenic 55.0%
GTGTTAACCCTCCGGTTCTG+AGG - chr1_2:2013219-2013238 None:intergenic 55.0%
!! CGAAGAGCTTTAAGCCGAGC+CGG - chr1_2:2013621-2013640 None:intergenic 55.0%
! CGGCTCGGCTTAAAGCTCTT+CGG + chr1_2:2013619-2013638 Msa0048920:CDS 55.0%
GAGCCGAGTAATGTCTGACG+TGG + chr1_2:2013656-2013675 Msa0048920:CDS 55.0%
TGACGTGGCGAAACGTGAGA+TGG + chr1_2:2013671-2013690 Msa0048920:CDS 55.0%
! CTGGCACCGCTAGAGTTTTG+TGG + chr1_2:2013718-2013737 Msa0048920:CDS 55.0%
!! GCACCGCTAGAGTTTTGTGG+TGG + chr1_2:2013721-2013740 Msa0048920:CDS 55.0%
GAGTTGGCAGGTGAAGGTGA+AGG + chr1_2:2015747-2015766 Msa0048920:CDS 55.0%
TCTCAGCTCCTCAGAACCGG+AGG + chr1_2:2013208-2013227 Msa0048920:five_prime_UTR 60.0%
CTCAGCTCCTCAGAACCGGA+GGG + chr1_2:2013209-2013228 Msa0048920:five_prime_UTR 60.0%
CTTCTGCGTCTACAACGGGG+AGG - chr1_2:2013446-2013465 None:intergenic 60.0%
CTTGGACAGGAGCTGAACCG+AGG - chr1_2:2013557-2013576 None:intergenic 60.0%
GGTTCAGCTCCTGTCCAAGC+CGG + chr1_2:2013558-2013577 Msa0048920:CDS 60.0%
GTTCAGCTCCTGTCCAAGCC+GGG + chr1_2:2013559-2013578 Msa0048920:CDS 60.0%
TATGGGTCGGTTGTGTCCCG+CGG - chr1_2:2015399-2015418 None:intergenic 60.0%
GCGTCTACAACGGGGAGGCT+TGG - chr1_2:2013441-2013460 None:intergenic 65.0%
TGACCTCGGTGGCTGAGACC+CGG - chr1_2:2013580-2013599 None:intergenic 65.0%
!! GGCTGAGACCCGGCTTGGAC+AGG - chr1_2:2013570-2013589 None:intergenic 70.0%
TCGGTGGCTGAGACCCGGCT+TGG - chr1_2:2013575-2013594 None:intergenic 70.0%
AAGCCGGGTCTCAGCCACCG+AGG + chr1_2:2013574-2013593 Msa0048920:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 2012974 2016221 2012974 ID=Msa0048920;Name=Msa0048920
chr1_2 mRNA 2012974 2016221 2012974 ID=Msa0048920-mRNA-1;Parent=Msa0048920;Name=Msa0048920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=320|0|0.5|1|1|1|2|418|206
chr1_2 exon 2012974 2013849 2012974 ID=Msa0048920-mRNA-1:exon:361;Parent=Msa0048920-mRNA-1
chr1_2 exon 2015739 2016221 2015739 ID=Msa0048920-mRNA-1:exon:362;Parent=Msa0048920-mRNA-1
chr1_2 five_prime_UTR 2012974 2013293 2012974 ID=Msa0048920-mRNA-1:five_prime_utr;Parent=Msa0048920-mRNA-1
chr1_2 CDS 2013294 2013849 2013294 ID=Msa0048920-mRNA-1:cds;Parent=Msa0048920-mRNA-1
chr1_2 CDS 2015739 2015803 2015739 ID=Msa0048920-mRNA-1:cds;Parent=Msa0048920-mRNA-1
chr1_2 three_prime_UTR 2015804 2016221 2015804 ID=Msa0048920-mRNA-1:three_prime_utr;Parent=Msa0048920-mRNA-1
Gene Sequence

>Msa0048920

ATGGAAGAGAAAAAGAGGTCACAATGGAGCTGGACATCAGCAATAATAGGAGCAACAACAGCACTAGCAGCAACATCAATTCTCTCAGCAAAACCAAAAGACCCAACATTCCACCTCATCTCAATCAACTTCACTTCCTTAAAACCAAGCCTCCCCGTTGTAGACGCAGAAGTTCTTCTAACCGTTCATGTCACCAATCCAAACATAGCCCCAATCAACTACTCTTCAACAACCATGTCAATTTTCTACGAAGGTTCTCTCCTCGGTTCAGCTCCTGTCCAAGCCGGGTCTCAGCCACCGAGGTCATGTCAGTTACTGAGACTTCCGGCTCGGCTTAAAGCTCTTCGGCTCGCGAAACACGCGAGCCGAGTAATGTCTGACGTGGCGAAACGTGAGATGGTTCTTGATGCGGCTGTTGATATTGCTGGCACCGCTAGAGTTTTGTGGTGGGACCATAAGTTTAAAGTGAGAGTTAATAGTCATATTACTGTTGATCCTGTTTTTCTTGATGTTATTGATCAGGAGAATACTGCACAACTTGAACTCTTTGGCTCAGTAGATGATGAGTTGGCAGGTGAAGGTGAAGGTGAAGATGAAACTGAAGCAAAAGCTGAGGAGTGA

Protein sequence

>Msa0048920

MEEKKRSQWSWTSAIIGATTALAATSILSAKPKDPTFHLISINFTSLKPSLPVVDAEVLLTVHVTNPNIAPINYSSTTMSIFYEGSLLGSAPVQAGSQPPRSCQLLRLPARLKALRLAKHASRVMSDVAKREMVLDAAVDIAGTARVLWWDHKFKVRVNSHITVDPVFLDVIDQENTAQLELFGSVDDELAGEGEGEDETEAKAEE*