AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1282640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1282640 MtrunA17_Chr8g0354121 96.729 214 2 1 126 339 187 395 6.35e-147 419
Msa1282640 MtrunA17_Chr8g0354121 99.206 126 1 0 1 126 1 126 9.23e-87 266
Msa1282640 MtrunA17_Chr3g0081511 56.331 387 94 7 1 316 1 383 9.99e-135 389
Msa1282640 MtrunA17_Chr3g0081421 54.404 386 106 10 1 316 1 386 5.52e-126 367
Msa1282640 MtrunA17_Chr7g0255561 53.619 373 106 7 6 318 7 372 3.22e-122 357
Msa1282640 MtrunA17_Chr7g0255581 53.619 373 106 7 6 318 7 372 3.22e-122 357
Msa1282640 MtrunA17_Chr7g0263101 40.000 380 154 9 1 317 1 369 2.04e-78 244
Msa1282640 MtrunA17_Chr3g0114731 37.760 384 171 6 9 338 14 383 1.81e-76 240
Msa1282640 MtrunA17_Chr1g0182291 42.169 332 129 7 3 275 5 332 1.30e-74 234
Msa1282640 MtrunA17_Chr1g0160181 39.118 340 146 6 9 288 14 352 1.37e-67 217
Msa1282640 MtrunA17_Chr2g0290611 32.923 325 158 3 10 275 9 332 1.96e-55 184
Msa1282640 MtrunA17_Chr2g0278551 31.300 377 192 4 18 335 17 385 3.14e-55 185
Msa1282640 MtrunA17_Chr1g0171301 33.837 331 159 6 9 282 12 339 5.03e-52 176
Msa1282640 MtrunA17_Chr6g0483401 33.544 316 148 4 22 276 19 333 9.50e-49 167
Msa1282640 MtrunA17_Chr3g0114691 42.714 199 103 4 126 314 192 389 1.12e-48 168
Msa1282640 MtrunA17_Chr3g0114691 52.419 124 59 0 3 126 10 133 5.05e-36 134
Msa1282640 MtrunA17_Chr2g0284261 29.697 330 172 4 7 279 2 328 3.60e-46 160
Msa1282640 MtrunA17_Chr2g0332001 28.729 362 194 5 10 308 35 395 3.98e-46 161
Msa1282640 MtrunA17_Chr1g0160171 46.023 176 90 2 126 297 186 360 1.19e-45 159
Msa1282640 MtrunA17_Chr1g0160171 55.372 121 54 0 6 126 9 129 8.20e-38 139
Msa1282640 MtrunA17_Chr1g0184221 25.581 344 188 3 9 285 12 354 6.32e-44 155
Msa1282640 MtrunA17_Chr8g0334771 31.642 335 165 6 11 282 5 338 1.71e-43 154
Msa1282640 MtrunA17_Chr3g0129571 30.056 356 176 9 15 308 9 353 8.92e-43 151
Msa1282640 MtrunA17_Chr4g0050931 32.013 303 176 4 4 279 3 302 2.23e-42 149
Msa1282640 MtrunA17_Chr3g0114711 38.119 202 90 4 126 292 184 385 7.82e-39 142
Msa1282640 MtrunA17_Chr3g0114711 44.882 127 67 1 3 126 1 127 4.75e-30 118
Msa1282640 MtrunA17_Chr3g0129591 30.539 334 168 7 15 286 7 338 1.75e-38 140
Msa1282640 MtrunA17_Chr3g0114701 48.171 164 82 3 128 289 183 345 6.27e-38 139
Msa1282640 MtrunA17_Chr3g0114701 44.915 118 65 0 9 126 5 122 7.88e-27 109
Msa1282640 MtrunA17_Chr4g0073241 26.870 361 194 7 18 313 13 368 2.26e-37 137
Msa1282640 MtrunA17_Chr3g0129601 40.127 157 93 1 128 284 204 359 4.19e-36 134
Msa1282640 MtrunA17_Chr3g0129601 35.772 123 79 0 4 126 20 142 1.57e-19 88.2
Msa1282640 MtrunA17_Chr4g0050881 38.272 162 98 2 129 290 184 343 9.96e-34 127
Msa1282640 MtrunA17_Chr4g0050881 37.719 114 70 1 10 123 6 118 1.19e-17 82.8
Msa1282640 MtrunA17_Chr3g0126101 28.213 319 169 5 20 283 16 329 2.00e-33 126
Msa1282640 MtrunA17_Chr1g0177221 31.452 248 112 4 13 203 18 264 3.34e-33 124
Msa1282640 MtrunA17_Chr2g0278541 36.923 195 111 4 130 314 194 386 1.96e-32 124
Msa1282640 MtrunA17_Chr2g0278541 38.655 119 73 0 7 125 6 124 8.17e-24 100
Msa1282640 MtrunA17_Chr4g0051001 27.778 306 162 4 7 253 25 330 2.42e-32 123
Msa1282640 MtrunA17_Chr3g0129581 31.737 334 164 6 15 286 7 338 3.04e-32 123
Msa1282640 MtrunA17_Chr3g0142131 39.735 151 90 1 126 276 203 352 6.00e-32 123
Msa1282640 MtrunA17_Chr3g0142131 47.863 117 61 0 10 126 17 133 5.37e-29 115
Msa1282640 MtrunA17_Chr8g0334761 36.364 176 105 4 112 282 165 338 2.65e-31 121
Msa1282640 MtrunA17_Chr8g0334761 44.167 120 63 2 11 126 5 124 8.10e-23 97.8
Msa1282640 MtrunA17_Chr2g0278021 32.227 211 137 3 129 339 67 271 3.57e-31 119
Msa1282640 MtrunA17_Chr1g0155761 40.397 151 89 1 126 276 209 358 5.15e-30 118
Msa1282640 MtrunA17_Chr1g0155761 44.444 117 65 0 10 126 18 134 5.25e-27 110
Msa1282640 MtrunA17_Chr8g0383731 35.443 158 101 1 127 284 182 338 5.84e-30 117
Msa1282640 MtrunA17_Chr8g0383731 34.821 112 73 0 15 126 7 118 1.93e-12 67.4
Msa1282640 MtrunA17_Chr5g0441761 25.641 312 177 5 17 275 18 327 6.04e-30 117
Msa1282640 MtrunA17_Chr2g0278561 38.854 157 94 2 129 285 191 345 1.38e-29 117
Msa1282640 MtrunA17_Chr2g0278561 46.154 117 63 0 7 123 9 125 5.80e-28 112
Msa1282640 MtrunA17_Chr1g0186571 40.789 152 84 3 146 296 201 347 1.60e-29 116
Msa1282640 MtrunA17_Chr1g0186571 39.683 126 74 1 3 126 1 126 4.72e-23 98.2
Msa1282640 MtrunA17_Chr7g0271561 49.123 114 58 0 18 131 12 125 4.72e-29 115
Msa1282640 MtrunA17_Chr7g0271561 36.129 155 98 1 129 283 187 340 1.22e-26 108
Msa1282640 MtrunA17_Chr5g0413921 27.812 320 165 6 18 276 12 326 9.09e-29 114
Msa1282640 MtrunA17_Chr6g0463971 34.395 157 102 1 127 283 189 344 1.01e-28 114
Msa1282640 MtrunA17_Chr6g0463971 40.000 115 68 1 10 124 13 126 2.05e-23 99.4
Msa1282640 MtrunA17_Chr1g0186611 41.429 140 79 3 146 283 204 342 1.42e-28 113
Msa1282640 MtrunA17_Chr1g0186611 42.373 118 68 0 9 126 12 129 1.76e-25 105
Msa1282640 MtrunA17_Chr1g0186641 35.758 165 103 3 122 284 177 340 4.40e-28 112
Msa1282640 MtrunA17_Chr1g0186641 42.857 126 70 1 3 126 1 126 2.16e-25 104
Msa1282640 MtrunA17_Chr1g0164831 31.013 158 108 1 126 283 172 328 3.99e-27 109
Msa1282640 MtrunA17_Chr1g0164831 39.623 106 62 1 18 123 8 111 1.12e-15 77.0
Msa1282640 MtrunA17_Chr1g0186601 44.915 118 65 0 9 126 12 129 4.20e-27 109
Msa1282640 MtrunA17_Chr1g0186601 39.474 152 83 5 133 282 193 337 5.62e-27 108
Msa1282640 MtrunA17_Chr1g0182261 41.096 146 75 5 150 285 83 227 1.51e-26 105
Msa1282640 MtrunA17_Chr1g0182261 41.558 77 45 0 9 85 10 86 2.93e-13 68.6
Msa1282640 MtrunA17_Chr4g0051021 31.915 188 125 2 131 316 191 377 1.73e-26 108
Msa1282640 MtrunA17_Chr4g0051021 41.176 119 70 0 8 126 9 127 1.25e-21 94.7
Msa1282640 MtrunA17_Chr1g0150151 24.425 348 198 7 3 287 1 346 5.95e-26 106
Msa1282640 MtrunA17_Chr1g0186561 43.220 118 67 0 9 126 12 129 6.29e-26 106
Msa1282640 MtrunA17_Chr1g0186561 39.024 164 90 5 138 299 199 354 2.76e-24 101
Msa1282640 MtrunA17_Chr5g0404801 43.333 120 68 0 10 129 4 123 7.14e-26 100
Msa1282640 MtrunA17_Chr4g0050941 34.737 190 120 3 129 318 193 378 2.55e-25 105
Msa1282640 MtrunA17_Chr4g0050941 42.149 121 69 1 7 126 6 126 1.87e-22 97.1
Msa1282640 MtrunA17_Chr4g0050891 40.800 125 73 1 146 270 208 331 2.55e-25 104
Msa1282640 MtrunA17_Chr4g0050891 37.288 118 74 0 6 123 6 123 2.59e-20 90.5
Msa1282640 MtrunA17_Chr8g0334751 35.625 160 102 1 126 285 182 340 3.33e-25 104
Msa1282640 MtrunA17_Chr8g0334751 41.525 118 65 2 11 124 6 123 1.58e-17 82.4
Msa1282640 MtrunA17_Chr5g0413941 36.000 150 95 1 127 276 178 326 3.63e-25 103
Msa1282640 MtrunA17_Chr5g0413941 31.148 122 82 2 10 130 4 124 4.02e-12 66.6
Msa1282640 MtrunA17_Chr2g0278031 42.982 114 65 0 10 123 11 124 4.38e-25 98.2
Msa1282640 MtrunA17_Chr2g0310441 30.151 199 124 4 126 319 181 369 4.51e-25 103
Msa1282640 MtrunA17_Chr2g0310441 39.316 117 66 2 11 122 5 121 9.98e-18 83.2
Msa1282640 MtrunA17_Chr6g0451261 27.331 311 168 7 3 256 1 310 1.01e-24 105
Msa1282640 MtrunA17_Chr4g0059311 32.919 161 105 2 127 285 183 342 1.51e-24 102
Msa1282640 MtrunA17_Chr4g0059311 33.600 125 82 1 3 126 1 125 9.94e-18 83.2
Msa1282640 MtrunA17_Chr5g0413951 30.220 182 122 2 95 276 150 326 4.66e-24 100
Msa1282640 MtrunA17_Chr8g0334721 35.971 139 77 1 170 308 4 130 1.79e-23 95.1
Msa1282640 MtrunA17_Chr1g0160111 44.545 110 61 0 22 131 16 125 1.62e-22 97.1
Msa1282640 MtrunA17_Chr1g0160111 29.480 173 114 2 129 294 186 357 1.95e-22 96.7
Msa1282640 MtrunA17_Chr6g0451201 26.537 309 170 6 33 287 32 337 4.21e-22 95.5
Msa1282640 MtrunA17_Chr5g0404811 32.500 160 105 2 130 289 69 225 4.87e-22 93.6
Msa1282640 MtrunA17_Chr6g0451171 24.620 329 181 7 22 286 21 346 3.23e-21 93.2
Msa1282640 MtrunA17_Chr5g0413931 30.000 180 125 1 104 283 154 332 3.57e-21 92.8
Msa1282640 MtrunA17_Chr1g0177231 47.475 99 48 1 204 298 29 127 5.38e-21 87.4
Msa1282640 MtrunA17_Chr8g0334711 43.396 106 58 2 18 122 15 119 2.01e-20 88.2
Msa1282640 MtrunA17_Chr3g0084091 21.212 297 155 6 93 317 10 299 1.37e-19 87.8
Msa1282640 MtrunA17_Chr5g0429001 27.976 168 108 2 131 286 131 297 2.24e-19 87.4
Msa1282640 MtrunA17_Chr3g0126091 20.973 329 199 5 15 283 13 340 7.21e-19 86.3
Msa1282640 MtrunA17_Chr6g0451191 27.976 168 112 2 127 286 55 221 2.60e-18 82.8
Msa1282640 MtrunA17_Chr1g0172891 50.725 69 34 0 208 276 11 79 4.18e-18 79.0
Msa1282640 MtrunA17_Chr5g0413961 29.560 159 110 2 127 284 181 338 6.41e-18 83.6
Msa1282640 MtrunA17_Chr5g0413961 33.333 120 79 1 7 126 8 126 6.59e-16 77.8
Msa1282640 MtrunA17_Chr5g0428881 25.263 190 139 2 131 318 196 384 7.47e-18 83.6
Msa1282640 MtrunA17_Chr5g0428881 29.008 131 86 1 3 126 1 131 7.31e-15 74.7
Msa1282640 MtrunA17_Chr1g0211801 36.364 121 75 1 3 123 1 119 1.17e-17 81.6
Msa1282640 MtrunA17_Chr7g0227921 32.500 160 101 4 126 282 180 335 1.23e-17 82.8
Msa1282640 MtrunA17_Chr7g0227921 31.933 119 79 2 9 126 7 124 8.23e-12 65.5
Msa1282640 MtrunA17_Chr6g0451251 25.234 321 180 6 18 281 17 334 1.87e-17 82.4
Msa1282640 MtrunA17_Chr5g0408041 38.938 113 69 0 12 124 10 122 2.49e-17 82.4
Msa1282640 MtrunA17_Chr5g0408041 31.126 151 102 2 126 276 198 346 7.90e-12 65.9
Msa1282640 MtrunA17_Chr8g0372571 68.182 44 14 0 183 226 2 45 3.38e-17 75.1
Msa1282640 MtrunA17_Chr4g0021721 68.182 44 14 0 183 226 2 45 4.09e-17 74.7
Msa1282640 MtrunA17_Chr5g0408031 35.652 115 74 0 10 124 7 121 4.82e-17 81.3
Msa1282640 MtrunA17_Chr5g0408031 31.126 151 102 2 126 276 197 345 5.08e-12 66.2
Msa1282640 MtrunA17_Chr5g0408001 35.043 117 76 0 10 126 7 123 6.64e-17 80.9
Msa1282640 MtrunA17_Chr5g0408001 30.601 183 119 4 130 312 199 373 1.38e-13 71.2
Msa1282640 MtrunA17_Chr6g0451211 34.513 113 74 0 175 287 230 342 8.52e-17 80.5
Msa1282640 MtrunA17_Chr5g0407991 36.607 112 71 0 13 124 9 120 1.37e-16 80.1
Msa1282640 MtrunA17_Chr5g0407991 30.612 147 100 2 130 276 198 342 8.44e-11 62.8
Msa1282640 MtrunA17_Chr1g0211811 39.241 79 48 0 205 283 1 79 2.01e-15 70.9
Msa1282640 MtrunA17_Chr5g0407971 33.913 115 76 0 10 124 8 122 7.45e-15 74.7
Msa1282640 MtrunA17_Chr5g0407971 30.612 147 100 2 130 276 200 344 9.26e-14 71.6
Msa1282640 MtrunA17_Chr5g0399281 24.850 334 173 10 10 275 5 328 9.59e-15 74.3
Msa1282640 MtrunA17_Chr6g0451241 44.928 69 38 0 219 287 23 91 2.22e-14 68.9
Msa1282640 MtrunA17_Chr8g0369841 33.036 112 75 0 13 124 9 120 3.73e-14 72.8
Msa1282640 MtrunA17_Chr4g0050921 34.375 96 61 1 158 253 8 101 4.12e-14 68.6
Msa1282640 MtrunA17_Chr4g0056081 32.609 138 88 4 1 134 2 138 2.12e-12 67.4
Msa1282640 MtrunA17_Chr1g0182251 60.465 43 17 0 72 114 1 43 4.68e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1282640 AT2G40900.1 48.169 355 123 5 10 306 7 358 5.62e-113 333
Msa1282640 AT3G56620.1 49.842 317 105 2 10 273 7 322 3.60e-106 316
Msa1282640 AT5G07050.1 57.944 214 82 3 127 339 195 401 2.90e-79 248
Msa1282640 AT5G07050.1 76.923 130 26 1 1 126 1 130 1.44e-62 204
Msa1282640 AT1G44800.1 39.275 331 143 4 5 278 2 331 6.78e-75 235
Msa1282640 AT2G39510.1 37.984 387 165 8 8 335 2 372 1.11e-73 233
Msa1282640 AT2G37460.1 41.768 328 136 7 3 275 4 331 1.80e-72 229
Msa1282640 AT4G08290.1 32.905 389 175 8 6 327 5 374 5.31e-61 200
Msa1282640 AT2G37450.1 40.959 271 129 6 18 275 13 265 8.59e-58 189
Msa1282640 AT2G37450.2 39.932 293 140 7 18 275 13 304 1.19e-54 182
Msa1282640 AT4G30420.2 30.295 373 190 7 10 314 5 375 5.76e-52 176
Msa1282640 AT4G30420.1 30.328 366 185 7 17 314 2 365 3.06e-51 174
Msa1282640 AT4G28040.1 30.625 320 169 7 13 282 7 323 1.97e-47 164
Msa1282640 AT4G28040.5 30.625 320 169 7 13 282 7 323 1.97e-47 164
Msa1282640 AT4G28040.3 30.625 320 169 7 13 282 7 323 1.97e-47 164
Msa1282640 AT4G28040.4 30.625 320 169 7 13 282 7 323 1.97e-47 164
Msa1282640 AT4G28040.2 30.625 320 169 7 13 282 7 323 1.97e-47 164
Msa1282640 AT1G21890.1 41.667 192 103 4 126 311 189 377 7.65e-44 155
Msa1282640 AT1G21890.1 63.248 117 43 0 10 126 7 123 8.06e-44 155
Msa1282640 AT1G21890.2 63.248 117 43 0 10 126 7 123 1.07e-43 154
Msa1282640 AT1G21890.2 44.531 128 70 1 126 253 189 315 8.88e-32 122
Msa1282640 AT3G30340.1 29.755 326 170 4 21 288 18 342 9.78e-43 152
Msa1282640 AT4G01440.1 30.032 313 158 4 29 281 25 336 1.78e-40 145
Msa1282640 AT2G37450.3 47.973 148 75 2 129 275 86 232 2.01e-40 143
Msa1282640 AT4G08300.1 38.144 194 113 3 126 316 183 372 3.32e-39 142
Msa1282640 AT4G08300.1 53.279 122 57 0 5 126 2 123 1.16e-37 138
Msa1282640 AT5G40210.1 31.731 312 164 7 16 284 15 320 5.47e-37 136
Msa1282640 AT5G13670.1 43.103 174 75 3 8 181 2 151 7.85e-36 134
Msa1282640 AT5G13670.1 45.033 151 80 3 127 276 181 329 9.07e-36 134
Msa1282640 AT4G01440.3 28.723 282 143 3 29 253 25 305 4.56e-33 125
Msa1282640 AT5G64700.1 36.250 160 101 1 127 286 185 343 3.35e-32 124
Msa1282640 AT5G64700.1 40.870 115 68 0 10 124 4 118 3.41e-15 76.3
Msa1282640 AT1G09380.1 44.262 122 68 0 10 131 4 125 2.11e-30 119
Msa1282640 AT1G09380.1 36.301 146 92 1 127 272 182 326 1.80e-27 111
Msa1282640 AT1G75500.1 35.025 197 110 4 126 307 196 389 2.23e-30 119
Msa1282640 AT1G75500.1 45.299 117 64 0 10 126 16 132 4.40e-28 113
Msa1282640 AT1G75500.2 35.025 197 110 4 126 307 196 389 2.23e-30 119
Msa1282640 AT1G75500.2 45.299 117 64 0 10 126 16 132 4.40e-28 113
Msa1282640 AT3G28050.1 25.159 314 180 3 16 275 14 326 3.36e-30 118
Msa1282640 AT3G18200.1 42.568 148 82 3 130 276 76 221 1.09e-29 114
Msa1282640 AT4G08290.2 43.802 121 68 0 6 126 5 125 1.87e-29 114
Msa1282640 AT4G08290.2 37.662 77 47 1 126 202 184 259 7.33e-12 65.5
Msa1282640 AT3G18200.2 42.568 148 82 3 130 276 206 351 1.06e-28 114
Msa1282640 AT3G18200.2 44.355 124 69 0 3 126 24 147 2.61e-26 108
Msa1282640 AT5G45370.1 26.667 315 181 4 10 276 16 328 2.00e-27 110
Msa1282640 AT1G43650.1 37.419 155 95 2 126 279 173 326 2.29e-27 110
Msa1282640 AT1G43650.1 39.474 114 69 0 13 126 6 119 1.84e-17 82.4
Msa1282640 AT5G47470.2 26.549 339 175 10 5 278 49 378 3.91e-27 110
Msa1282640 AT5G47470.1 26.549 339 175 10 5 278 21 350 4.06e-27 110
Msa1282640 AT4G01430.1 23.932 351 198 7 26 316 21 362 4.42e-27 110
Msa1282640 AT5G47470.3 26.549 339 175 10 5 278 49 378 4.93e-27 110
Msa1282640 AT4G15540.1 25.904 332 192 5 4 283 3 332 1.91e-26 107
Msa1282640 AT4G15540.2 25.904 332 192 5 4 283 3 332 1.91e-26 107
Msa1282640 AT1G70260.1 23.988 346 197 6 3 283 1 345 2.53e-25 105
Msa1282640 AT1G25270.1 36.486 148 93 1 129 276 177 323 3.10e-24 102
Msa1282640 AT1G25270.1 40.870 115 68 0 12 126 1 115 1.27e-20 91.7
Msa1282640 AT1G11450.3 26.667 315 173 5 18 275 20 333 4.81e-24 101
Msa1282640 AT1G68170.2 36.735 147 92 1 129 275 188 333 6.29e-24 101
Msa1282640 AT1G68170.2 40.800 125 73 1 3 126 1 125 4.41e-18 84.7
Msa1282640 AT1G68170.1 36.735 147 92 1 129 275 178 323 6.50e-24 100
Msa1282640 AT1G68170.1 42.609 115 66 0 12 126 1 115 8.08e-18 83.6
Msa1282640 AT3G53210.3 41.739 115 67 0 10 124 6 120 6.95e-23 96.3
Msa1282640 AT3G53210.2 34.437 151 98 1 126 276 123 272 9.27e-23 97.1
Msa1282640 AT3G53210.1 34.437 151 98 1 126 276 180 329 1.47e-22 97.4
Msa1282640 AT3G53210.1 41.739 115 67 0 10 124 6 120 2.20e-22 97.1
Msa1282640 AT4G01440.5 32.704 159 103 2 126 281 71 228 4.82e-22 94.0
Msa1282640 AT4G01440.2 32.704 159 103 2 126 281 71 228 4.82e-22 94.0
Msa1282640 AT4G16620.1 26.300 327 172 7 22 283 20 342 1.15e-21 94.7
Msa1282640 AT3G28130.3 34.000 150 96 3 127 275 60 207 2.73e-20 88.6
Msa1282640 AT4G24980.1 26.642 274 141 9 28 276 1 239 2.88e-20 89.4
Msa1282640 AT3G28070.5 31.373 153 104 1 127 279 60 211 3.37e-20 88.2
Msa1282640 AT3G28100.1 30.178 169 112 2 127 290 186 353 3.67e-20 90.5
Msa1282640 AT3G28130.5 34.000 150 96 3 127 275 99 246 4.01e-20 89.0
Msa1282640 AT3G28130.1 34.000 150 96 3 127 275 99 246 4.01e-20 89.0
Msa1282640 AT3G28070.2 31.373 153 104 1 127 279 97 248 5.93e-20 88.6
Msa1282640 AT3G28080.9 29.240 171 115 2 127 292 60 229 8.23e-20 87.4
Msa1282640 AT3G28130.2 34.000 150 96 3 127 275 185 332 1.31e-19 89.0
Msa1282640 AT3G28080.5 31.333 150 102 1 127 276 97 245 1.58e-19 87.4
Msa1282640 AT3G28080.7 31.333 150 102 1 127 276 97 245 1.58e-19 87.4
Msa1282640 AT3G28080.8 31.333 150 102 1 127 276 97 245 1.58e-19 87.4
Msa1282640 AT3G28080.6 31.333 150 102 1 127 276 97 245 1.58e-19 87.4
Msa1282640 AT3G28070.1 31.373 153 104 1 127 279 189 340 2.55e-19 88.2
Msa1282640 AT4G01440.4 42.857 98 56 0 29 126 25 122 4.34e-19 86.3
Msa1282640 AT3G28080.1 29.240 171 115 2 127 292 186 355 5.17e-19 87.0
Msa1282640 AT3G30340.2 26.230 244 121 4 18 203 15 257 5.63e-19 85.9
Msa1282640 AT3G28080.2 29.240 171 115 2 127 292 178 347 5.64e-19 87.0
Msa1282640 AT1G01070.1 38.532 109 67 0 18 126 20 128 1.11e-18 86.3
Msa1282640 AT1G01070.1 31.333 150 102 1 126 275 187 335 1.30e-14 74.3
Msa1282640 AT4G01430.2 23.509 285 158 3 29 253 24 308 1.15e-18 85.9
Msa1282640 AT4G01430.3 28.846 156 110 1 126 281 44 198 1.42e-18 84.0
Msa1282640 AT5G40240.1 28.814 177 123 2 107 281 171 346 2.48e-18 85.5
Msa1282640 AT5G40240.3 28.814 177 123 2 107 281 171 346 2.48e-18 85.5
Msa1282640 AT5G40240.2 28.814 177 123 2 107 281 185 360 2.54e-18 85.5
Msa1282640 AT1G11450.4 38.532 109 67 0 18 126 20 128 7.14e-18 83.6
Msa1282640 AT1G43650.2 39.474 114 69 0 13 126 6 119 8.30e-18 82.4
Msa1282640 AT3G28080.3 26.280 293 193 8 16 292 16 301 1.52e-17 82.4
Msa1282640 AT1G11460.1 37.615 109 68 0 18 126 20 128 1.66e-17 82.8
Msa1282640 AT1G11460.1 26.667 150 109 1 126 275 186 334 4.60e-11 63.5
Msa1282640 AT5G45370.3 25.704 284 187 7 10 276 16 292 3.29e-17 81.6
Msa1282640 AT4G01450.4 41.000 100 58 1 26 124 21 120 1.97e-16 78.6
Msa1282640 AT4G01450.3 41.000 100 58 1 26 124 21 120 2.28e-16 77.8
Msa1282640 AT4G01450.1 41.000 100 58 1 26 124 21 120 4.37e-16 78.6
Msa1282640 AT4G01450.2 41.000 100 58 1 26 124 21 120 4.78e-16 78.6
Msa1282640 AT5G45370.2 35.652 115 74 0 10 124 16 130 1.14e-15 77.8
Msa1282640 AT5G45370.4 35.652 115 74 0 10 124 16 130 1.14e-15 77.8
Msa1282640 AT3G28080.4 26.455 189 129 3 98 279 9 194 1.79e-15 74.7
Msa1282640 AT5G64700.2 40.870 115 68 0 10 124 4 118 2.32e-15 75.5
Msa1282640 AT5G40230.1 29.032 155 109 1 127 281 194 347 2.51e-15 76.6
Msa1282640 AT5G40230.1 33.898 118 76 2 10 126 17 133 3.05e-12 67.4
Msa1282640 AT1G01070.2 31.333 150 102 1 126 275 140 288 5.19e-15 75.1
Msa1282640 AT1G01070.2 39.024 82 49 1 45 126 1 81 5.72e-11 63.2
Msa1282640 AT1G11450.5 44.304 79 44 0 48 126 6 84 1.12e-13 71.2
Msa1282640 AT1G11450.5 28.667 150 106 1 126 275 141 289 1.64e-12 67.8
Msa1282640 AT4G16620.4 30.539 167 103 4 126 283 83 245 2.27e-13 69.7
Msa1282640 AT4G16620.2 30.539 167 103 4 126 283 83 245 2.27e-13 69.7
Msa1282640 AT1G11450.1 28.667 150 106 1 126 275 93 241 8.11e-13 68.2
Msa1282640 AT1G11450.2 28.667 150 106 1 126 275 134 282 1.58e-12 67.8
Msa1282640 AT1G11450.2 43.421 76 43 0 51 126 2 77 4.64e-12 66.2
Msa1282640 AT4G19185.2 28.477 151 106 2 126 276 127 275 2.20e-12 67.4
Msa1282640 AT4G19185.1 28.477 151 106 2 126 276 205 353 2.37e-12 67.8
Msa1282640 AT3G45870.1 32.787 122 82 0 3 124 1 122 2.77e-12 67.4
Msa1282640 AT3G45870.1 29.371 143 99 2 128 270 194 334 9.04e-11 63.2
Msa1282640 AT3G45870.9 32.787 122 82 0 3 124 1 122 2.78e-12 66.6
Msa1282640 AT3G45870.8 32.787 122 82 0 3 124 1 122 3.99e-12 66.6
Msa1282640 AT3G45870.2 29.371 143 99 2 128 270 43 183 2.69e-11 63.2
Msa1282640 AT3G45870.5 29.371 143 99 2 128 270 119 259 4.82e-11 63.5

Find 89 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTTGAGCACCCTTTAT+TGG 0.161865 8_3:-23343067 None:intergenic
ACTTCACTTGTGGTCTTTAT+TGG 0.168621 8_3:+23341681 Msa1282640:CDS
TAGGCTTATATTCTGTTCTA+TGG 0.243269 8_3:+23342996 Msa1282640:CDS
GCTATGATATGTTTACAATT+TGG 0.247586 8_3:+23340069 Msa1282640:CDS
TGATATTCCTTTGCCAATAA+AGG 0.262662 8_3:+23343054 Msa1282640:CDS
AAAATTCGGAAGGTTATCTT+AGG 0.284219 8_3:-23340307 None:intergenic
GGGAGGAAAACTTGGTAAAA+AGG 0.288619 8_3:-23343303 None:intergenic
AAGAGAAATGGAATATGATT+AGG 0.298114 8_3:+23343237 Msa1282640:three_prime_UTR
GGTGCCATCTTGATTGTTAT+AGG 0.303386 8_3:+23342977 Msa1282640:CDS
CCAACTAATCCATGTAGAAA+TGG 0.325945 8_3:+23343388 Msa1282640:three_prime_UTR
AAGGGACAAAATGGGGATAA+TGG 0.328075 8_3:-23343284 None:intergenic
TGAAAATTTGCAAGAAAATT+CGG 0.334786 8_3:-23340321 None:intergenic
CCATTTCTACATGGATTAGT+TGG 0.345012 8_3:-23343388 None:intergenic
TATTTGAGAAGAAACTAGAT+AGG 0.353240 8_3:-23339976 None:intergenic
GATATTCCTTTGCCAATAAA+GGG 0.379436 8_3:+23343055 Msa1282640:CDS
TTATCATTGCCACCTTTGCT+TGG 0.388951 8_3:+23341455 Msa1282640:CDS
TATCATTGCCACCTTTGCTT+GGG 0.390164 8_3:+23341456 Msa1282640:CDS
AATCTGTTCTGCAAGGATAA+AGG 0.397927 8_3:-23342312 None:intergenic
TGTTTACAATTTGGCTATGC+TGG 0.398259 8_3:+23340078 Msa1282640:CDS
TCATTGCACACGAGAAGGTT+GGG 0.399257 8_3:-23340681 None:intergenic
ATGTACAAGGGCTAGTGATT+AGG 0.401274 8_3:+23342222 Msa1282640:CDS
TTAGTAGTAGGTTCTCTAGT+AGG 0.409677 8_3:-23343187 None:intergenic
GATGATCATTGTTGCAATCA+TGG 0.415373 8_3:+23342286 Msa1282640:CDS
GATCAAAATTTCTATTATGC+TGG 0.415531 8_3:+23340643 Msa1282640:CDS
TGGTTAACATTATTAGTAGT+AGG 0.418885 8_3:-23343199 None:intergenic
AGGCTTATATTCTGTTCTAT+GGG 0.421194 8_3:+23342997 Msa1282640:CDS
CAACTAATCCATGTAGAAAT+GGG 0.428119 8_3:+23343389 Msa1282640:three_prime_UTR
CTTCTGTATGGAGGATTGGT+TGG 0.434265 8_3:+23341748 Msa1282640:CDS
CTCTCAAACATAAATGCAAA+TGG 0.436031 8_3:-23340195 None:intergenic
GCTCAAATGAGTGGAAGTTC+AGG 0.440417 8_3:+23343079 Msa1282640:CDS
TTCTGTATGGAGGATTGGTT+GGG 0.449804 8_3:+23341749 Msa1282640:CDS
CAAACAGTACAAGGGGTGAT+GGG 0.465603 8_3:-23343326 None:intergenic
GATCCTTCTGTATGGAGGAT+TGG 0.467856 8_3:+23341744 Msa1282640:CDS
CTCATTGCACACGAGAAGGT+TGG 0.475287 8_3:-23340682 None:intergenic
TTCGGAAGGTTATCTTAGGT+TGG 0.483417 8_3:-23340303 None:intergenic
AACTGAAGAAAGCATGTTGT+TGG 0.484273 8_3:-23343152 None:intergenic
GGACATAGTGGCTCATTCCT+TGG 0.492407 8_3:-23340131 None:intergenic
CTGAGCATGATCCTTCTGTA+TGG 0.494380 8_3:+23341736 Msa1282640:CDS
CTTGCAGAACAGATTTACTC+TGG 0.496224 8_3:+23342320 Msa1282640:CDS
GATCATCATAAGTGGGCTAA+AGG 0.497400 8_3:-23342270 None:intergenic
GGGAATTGTGACCTCAAGCT+TGG 0.497579 8_3:+23342193 Msa1282640:intron
CATTTGCATTTATGTTTGAG+AGG 0.499498 8_3:+23340196 Msa1282640:CDS
TTATGATTCCCATTTCTACA+TGG 0.499818 8_3:-23343397 None:intergenic
CTAAAGGCAGTTGCAAAGAC+AGG 0.501855 8_3:-23342254 None:intergenic
CTATGTGGGTGCAGTGTGAT+GGG 0.505357 8_3:+23342956 Msa1282640:intron
TGGTATGAACATTATCACTA+AGG 0.506134 8_3:+23340098 Msa1282640:CDS
TCAAACAGTACAAGGGGTGA+TGG 0.506594 8_3:-23343327 None:intergenic
GCCATCACAAAAGTCATGGC+TGG 0.507574 8_3:-23340715 None:intergenic
ACTATGTGGGTGCAGTGTGA+TGG 0.518714 8_3:+23342955 Msa1282640:intron
GCAACAATGATCATCATAAG+TGG 0.519358 8_3:-23342278 None:intergenic
TGAGCACCCTTTATTGGCAA+AGG 0.522528 8_3:-23343061 None:intergenic
ACAGTACAAGGGGTGATGGG+GGG 0.526940 8_3:-23343323 None:intergenic
AGCTTGGCATACTATGTACA+AGG 0.527654 8_3:+23342209 Msa1282640:CDS
TATTGTAGTATAGAGAAAAG+AGG 0.528082 8_3:-23339934 None:intergenic
GAGGAAGAACACTTGCAAGA+AGG 0.542054 8_3:-23339915 None:intergenic
ATATTTGCTCAAACAGTACA+AGG 0.543704 8_3:-23343335 None:intergenic
AAACAGTACAAGGGGTGATG+GGG 0.548665 8_3:-23343325 None:intergenic
CATTGCACACGAGAAGGTTG+GGG 0.551542 8_3:-23340680 None:intergenic
GGGCTAGTGATTAGGAAGAA+AGG 0.551748 8_3:+23342230 Msa1282640:CDS
CAGAACAGATTTACTCTGGA+GGG 0.561325 8_3:+23342324 Msa1282640:CDS
GATAAACGACGAGGACATAG+TGG 0.564461 8_3:-23340143 None:intergenic
ATGGAAGATCCTTACAGCAT+AGG 0.565176 8_3:-23341793 None:intergenic
ATGATCATTGTTGCAATCAT+GGG 0.565857 8_3:+23342287 Msa1282640:CDS
AGACTAACCCAAGAAGAGCT+AGG 0.568023 8_3:-23340345 None:intergenic
TAGAAGCAGTTGCAAAAGCA+TGG 0.568399 8_3:-23340167 None:intergenic
TAAGCCTATAACAATCAAGA+TGG 0.569495 8_3:-23342981 None:intergenic
AACAGTACAAGGGGTGATGG+GGG 0.577126 8_3:-23343324 None:intergenic
GAGTGATGCCCAAGCAAAGG+TGG 0.581732 8_3:-23341464 None:intergenic
GTAATGCTTCATGTTCTCAA+AGG 0.583502 8_3:-23340043 None:intergenic
AACTGCCATCACAAAAGTCA+TGG 0.584413 8_3:-23340719 None:intergenic
ACTAAGTCTTACTTCACTTG+TGG 0.588891 8_3:+23341671 Msa1282640:CDS
CAACAATGATCATCATAAGT+GGG 0.593912 8_3:-23342277 None:intergenic
AAAGAGTGATGCCCAAGCAA+AGG 0.604260 8_3:-23341467 None:intergenic
CAGAGTAAATCTGTTCTGCA+AGG 0.604588 8_3:-23342319 None:intergenic
TGTTCTATGGGGAAAGCACA+AGG 0.606487 8_3:+23343009 Msa1282640:CDS
TACATAGTATGCCAAGCTTG+AGG 0.608423 8_3:-23342204 None:intergenic
CAACCAATCCTCCATACAGA+AGG 0.613695 8_3:-23341747 None:intergenic
AATTTGCAAGAAAATTCGGA+AGG 0.622665 8_3:-23340317 None:intergenic
ATAAAGGGTGCTCAAATGAG+TGG 0.625024 8_3:+23343070 Msa1282640:CDS
AGCATGATCCTTCTGTATGG+AGG 0.629537 8_3:+23341739 Msa1282640:CDS
GTTGCTCATTGCACACGAGA+AGG 0.630812 8_3:-23340686 None:intergenic
GGCTTATATTCTGTTCTATG+GGG 0.631913 8_3:+23342998 Msa1282640:CDS
ATTTGCTCAAACAGTACAAG+GGG 0.635629 8_3:-23343333 None:intergenic
GCAGAACAGATTTACTCTGG+AGG 0.643564 8_3:+23342323 Msa1282640:CDS
ACTAAGGTTTCTCTCAACCA+AGG 0.665839 8_3:+23340114 Msa1282640:CDS
TATTTGCTCAAACAGTACAA+GGG 0.680212 8_3:-23343334 None:intergenic
GACACAGATCAAGTAAAACA+TGG 0.688084 8_3:+23343115 Msa1282640:CDS
GCTTGGCATACTATGTACAA+GGG 0.751986 8_3:+23342210 Msa1282640:CDS
AAGCATGGCGATAAACGACG+AGG 0.774328 8_3:-23340152 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTATATTAAAAAAA+TGG - chr8_3:23342431-23342450 None:intergenic 0.0%
!! ACTACTAAAAAAAATTAAAA+AGG + chr8_3:23341013-23341032 Msa1282640:intron 10.0%
!! ATAAAAAAATTAATGATGTT+AGG - chr8_3:23341117-23341136 None:intergenic 10.0%
!!! TTTTGTTTTTAAATATGAAA+AGG + chr8_3:23341224-23341243 Msa1282640:intron 10.0%
!! TTTAAAAAATTGTCAAAAAA+TGG - chr8_3:23342024-23342043 None:intergenic 10.0%
!! ATATTTGATCAATAAATTAC+AGG + chr8_3:23340611-23340630 Msa1282640:intron 15.0%
!!! CAAAATTCAGATTATTTTAA+GGG + chr8_3:23340758-23340777 Msa1282640:intron 15.0%
!! TAAGGGATTAATTAATTAAT+TGG - chr8_3:23340897-23340916 None:intergenic 15.0%
!! GTACATAGTATATAAAATAA+GGG - chr8_3:23340914-23340933 None:intergenic 15.0%
!! TGTACATAGTATATAAAATA+AGG - chr8_3:23340915-23340934 None:intergenic 15.0%
!!! TTTTTGTGCAAATTATTAAT+TGG + chr8_3:23341611-23341630 Msa1282640:intron 15.0%
!!! TTTTGTGCAAATTATTAATT+GGG + chr8_3:23341612-23341631 Msa1282640:intron 15.0%
!!! AGATAAAAACATTTTTTTAG+AGG - chr8_3:23341831-23341850 None:intergenic 15.0%
!! TTAATATACACTTATTACTT+GGG - chr8_3:23342541-23342560 None:intergenic 15.0%
!! AAAAAAAAAATCTAGACATA+GGG - chr8_3:23342620-23342639 None:intergenic 15.0%
!!! ATAAAAAGTTTTAAGAGAAA+TGG + chr8_3:23343225-23343244 Msa1282640:exon 15.0%
!! AATCAATAACCAAAGAAAAA+TGG + chr8_3:23340002-23340021 Msa1282640:exon 20.0%
!! TCTTATTGTTTCATATTTGT+AGG + chr8_3:23340275-23340294 Msa1282640:intron 20.0%
!! TGAAAATTTGCAAGAAAATT+CGG - chr8_3:23340324-23340343 None:intergenic 20.0%
!! GAACTAAAAATTGTAAATAG+AGG - chr8_3:23340424-23340443 None:intergenic 20.0%
!!! AAACATGTAGTTTTTAGATT+TGG - chr8_3:23340449-23340468 None:intergenic 20.0%
!!! ATGTTTTTTTATCTTTGAAG+AGG + chr8_3:23340463-23340482 Msa1282640:intron 20.0%
!!! TGTTTTTTTATCTTTGAAGA+GGG + chr8_3:23340464-23340483 Msa1282640:intron 20.0%
!!! TCCATATGTATTAACTTTTT+AGG - chr8_3:23340522-23340541 None:intergenic 20.0%
!!! CCTTAAAATAATCTGAATTT+TGG - chr8_3:23340760-23340779 None:intergenic 20.0%
!!! CCAAAATTCAGATTATTTTA+AGG + chr8_3:23340757-23340776 Msa1282640:intron 20.0%
!! AGACAATATTATGTAGAAAA+TGG + chr8_3:23340795-23340814 Msa1282640:intron 20.0%
!! TGACATCTAAAAAAAACTTA+TGG - chr8_3:23341162-23341181 None:intergenic 20.0%
!!! GTTTTTAAATATGAAAAGGA+TGG + chr8_3:23341228-23341247 Msa1282640:intron 20.0%
!! ATGCTAATGACATTATATAA+AGG + chr8_3:23341322-23341341 Msa1282640:intron 20.0%
!! TTACTATTGTAATTCTTAGA+AGG + chr8_3:23342136-23342155 Msa1282640:intron 20.0%
!! CTTAATATACACTTATTACT+TGG - chr8_3:23342542-23342561 None:intergenic 20.0%
!! GAAAAAAAAAATCTAGACAT+AGG - chr8_3:23342621-23342640 None:intergenic 20.0%
!! TGACAAAATTTAATACAAGT+TGG - chr8_3:23342886-23342905 None:intergenic 20.0%
!!! AAATTTTGTCATCATTCAAA+TGG + chr8_3:23342895-23342914 Msa1282640:intron 20.0%
!!! CTAACTAAAGAATTTGATTT+TGG + chr8_3:23342932-23342951 Msa1282640:intron 20.0%
! TATTGTAGTATAGAGAAAAG+AGG - chr8_3:23339937-23339956 None:intergenic 25.0%
! TATTTGAGAAGAAACTAGAT+AGG - chr8_3:23339979-23339998 None:intergenic 25.0%
!!! AAAGGAATTTGATTTTTCCA+TGG - chr8_3:23340028-23340047 None:intergenic 25.0%
! GCTATGATATGTTTACAATT+TGG + chr8_3:23340069-23340088 Msa1282640:CDS 25.0%
! TTGTTTCATATTTGTAGGAA+AGG + chr8_3:23340280-23340299 Msa1282640:intron 25.0%
! GCCTAAAAAGTTAATACATA+TGG + chr8_3:23340518-23340537 Msa1282640:intron 25.0%
! CATTATTCATGCTATATTTG+TGG - chr8_3:23340545-23340564 None:intergenic 25.0%
!!! TAGAAATTTTGATCAATCAC+TGG - chr8_3:23340637-23340656 None:intergenic 25.0%
! GATCAAAATTTCTATTATGC+TGG + chr8_3:23340643-23340662 Msa1282640:CDS 25.0%
! ATTATGTAGAAAATGGAAGA+AGG + chr8_3:23340802-23340821 Msa1282640:intron 25.0%
! CTTATCGTTAAATTTAGTGA+CGG - chr8_3:23341059-23341078 None:intergenic 25.0%
! ATTATATAAAGGTCCTATTG+TGG + chr8_3:23341333-23341352 Msa1282640:intron 25.0%
!!! ATTTTGAGGATGTCTATTTT+TGG - chr8_3:23341371-23341390 None:intergenic 25.0%
! TGCAAATTATTAATTGGGTT+AGG + chr8_3:23341617-23341636 Msa1282640:intron 25.0%
! TTAGAGGTAAGTTAAAATCA+TGG - chr8_3:23341815-23341834 None:intergenic 25.0%
!!! ATTCTTACTCTCTGTTATTT+TGG + chr8_3:23342067-23342086 Msa1282640:intron 25.0%
!! ATTTTCTTGCCAATATATTG+AGG - chr8_3:23342481-23342500 None:intergenic 25.0%
!! TACTTGGGTTTTACTAAATT+TGG - chr8_3:23342526-23342545 None:intergenic 25.0%
!! TAACTTGTATTAATGCAACA+TGG - chr8_3:23342566-23342585 None:intergenic 25.0%
! ATTTAAATCAGAAAGCTAGT+AGG - chr8_3:23342660-23342679 None:intergenic 25.0%
!!! TTGCCTATAAAGAAGTATTA+AGG + chr8_3:23342684-23342703 Msa1282640:intron 25.0%
!! TAGCCTTAATACTTCTTTAT+AGG - chr8_3:23342690-23342709 None:intergenic 25.0%
!!! AATTTGATTTTGGACTATGT+GGG + chr8_3:23342942-23342961 Msa1282640:intron 25.0%
! TGGTTAACATTATTAGTAGT+AGG - chr8_3:23343202-23343221 None:intergenic 25.0%
!! CTCTTAAAACTTTTTATTGC+TGG - chr8_3:23343222-23343241 None:intergenic 25.0%
! AAGAGAAATGGAATATGATT+AGG + chr8_3:23343237-23343256 Msa1282640:three_prime_UTR 25.0%
TGGTATGAACATTATCACTA+AGG + chr8_3:23340098-23340117 Msa1282640:CDS 30.0%
CTCTCAAACATAAATGCAAA+TGG - chr8_3:23340198-23340217 None:intergenic 30.0%
CATTTGCATTTATGTTTGAG+AGG + chr8_3:23340196-23340215 Msa1282640:CDS 30.0%
AAAATTCGGAAGGTTATCTT+AGG - chr8_3:23340310-23340329 None:intergenic 30.0%
AATTTGCAAGAAAATTCGGA+AGG - chr8_3:23340320-23340339 None:intergenic 30.0%
!! ATTTTAAGGGTGTGAATGTT+AGG + chr8_3:23340771-23340790 Msa1282640:intron 30.0%
TAAAGGAAATATGAGAGGTT+AGG - chr8_3:23340959-23340978 None:intergenic 30.0%
!!! GGTTTTAAAGGAAATATGAG+AGG - chr8_3:23340964-23340983 None:intergenic 30.0%
! GTTTCATGTGTTTCATTTTG+AGG - chr8_3:23341385-23341404 None:intergenic 30.0%
! TCTGAAAGAGATTGGATTTT+AGG + chr8_3:23341421-23341440 Msa1282640:intron 30.0%
! CTGAAAGAGATTGGATTTTA+GGG + chr8_3:23341422-23341441 Msa1282640:intron 30.0%
ATGTCAATACCTATATTCGA+GGG + chr8_3:23342095-23342114 Msa1282640:intron 30.0%
! CTTTTAAATCCCTCGAATAT+AGG - chr8_3:23342107-23342126 None:intergenic 30.0%
CAACAATGATCATCATAAGT+GGG - chr8_3:23342280-23342299 None:intergenic 30.0%
ATGATCATTGTTGCAATCAT+GGG + chr8_3:23342287-23342306 Msa1282640:CDS 30.0%
! TATCTTCATCGATTATCACA+AGG + chr8_3:23342746-23342765 Msa1282640:intron 30.0%
!! GAATTTGATTTTGGACTATG+TGG + chr8_3:23342941-23342960 Msa1282640:intron 30.0%
TAAGCCTATAACAATCAAGA+TGG - chr8_3:23342984-23343003 None:intergenic 30.0%
TAGGCTTATATTCTGTTCTA+TGG + chr8_3:23342996-23343015 Msa1282640:CDS 30.0%
AGGCTTATATTCTGTTCTAT+GGG + chr8_3:23342997-23343016 Msa1282640:CDS 30.0%
TGATATTCCTTTGCCAATAA+AGG + chr8_3:23343054-23343073 Msa1282640:CDS 30.0%
GATATTCCTTTGCCAATAAA+GGG + chr8_3:23343055-23343074 Msa1282640:CDS 30.0%
TTGGTAAAAAGGGACAAAAT+GGG - chr8_3:23343295-23343314 None:intergenic 30.0%
TATTTGCTCAAACAGTACAA+GGG - chr8_3:23343337-23343356 None:intergenic 30.0%
ATATTTGCTCAAACAGTACA+AGG - chr8_3:23343338-23343357 None:intergenic 30.0%
CAACTAATCCATGTAGAAAT+GGG + chr8_3:23343389-23343408 Msa1282640:three_prime_UTR 30.0%
TTATGATTCCCATTTCTACA+TGG - chr8_3:23343400-23343419 None:intergenic 30.0%
TAACCAAAGAAAAATGGCCA+TGG + chr8_3:23340008-23340027 Msa1282640:exon 35.0%
!!! TTTCCATGGCCATTTTTCTT+TGG - chr8_3:23340014-23340033 None:intergenic 35.0%
GTAATGCTTCATGTTCTCAA+AGG - chr8_3:23340046-23340065 None:intergenic 35.0%
TGTTTACAATTTGGCTATGC+TGG + chr8_3:23340078-23340097 Msa1282640:CDS 35.0%
!! ATTTTCATCCTAGCTCTTCT+TGG + chr8_3:23340337-23340356 Msa1282640:CDS 35.0%
!! TTTTCATCCTAGCTCTTCTT+GGG + chr8_3:23340338-23340357 Msa1282640:CDS 35.0%
! CTTCTTGCTAGTTTAATTCG+CGG + chr8_3:23340368-23340387 Msa1282640:intron 35.0%
AAGATGCCAAGCAAAGATAT+TGG + chr8_3:23341273-23341292 Msa1282640:intron 35.0%
AGATGCCAAGCAAAGATATT+GGG + chr8_3:23341274-23341293 Msa1282640:intron 35.0%
TTGTTCCCAATATCTTTGCT+TGG - chr8_3:23341282-23341301 None:intergenic 35.0%
ACTAAGTCTTACTTCACTTG+TGG + chr8_3:23341671-23341690 Msa1282640:CDS 35.0%
ACTTCACTTGTGGTCTTTAT+TGG + chr8_3:23341681-23341700 Msa1282640:CDS 35.0%
!!! AGCTATTGCTGTTACTTTTG+TGG + chr8_3:23341713-23341732 Msa1282640:CDS 35.0%
CATGTCAATACCTATATTCG+AGG + chr8_3:23342094-23342113 Msa1282640:intron 35.0%
GCAACAATGATCATCATAAG+TGG - chr8_3:23342281-23342300 None:intergenic 35.0%
GATGATCATTGTTGCAATCA+TGG + chr8_3:23342286-23342305 Msa1282640:CDS 35.0%
AATCTGTTCTGCAAGGATAA+AGG - chr8_3:23342315-23342334 None:intergenic 35.0%
CTGCATCTTCCTCAATATAT+TGG + chr8_3:23342469-23342488 Msa1282640:intron 35.0%
GGCTTATATTCTGTTCTATG+GGG + chr8_3:23342998-23343017 Msa1282640:CDS 35.0%
GACACAGATCAAGTAAAACA+TGG + chr8_3:23343115-23343134 Msa1282640:CDS 35.0%
! AACTGAAGAAAGCATGTTGT+TGG - chr8_3:23343155-23343174 None:intergenic 35.0%
TTAGTAGTAGGTTCTCTAGT+AGG - chr8_3:23343190-23343209 None:intergenic 35.0%
TGGTAAAAAGGGACAAAATG+GGG - chr8_3:23343294-23343313 None:intergenic 35.0%
CTTGGTAAAAAGGGACAAAA+TGG - chr8_3:23343296-23343315 None:intergenic 35.0%
GGAGGAAAACTTGGTAAAAA+GGG - chr8_3:23343305-23343324 None:intergenic 35.0%
ATTTGCTCAAACAGTACAAG+GGG - chr8_3:23343336-23343355 None:intergenic 35.0%
!! CCATTTCTACATGGATTAGT+TGG - chr8_3:23343391-23343410 None:intergenic 35.0%
CCAACTAATCCATGTAGAAA+TGG + chr8_3:23343388-23343407 Msa1282640:three_prime_UTR 35.0%
ACTAAGGTTTCTCTCAACCA+AGG + chr8_3:23340114-23340133 Msa1282640:CDS 40.0%
TAGAAGCAGTTGCAAAAGCA+TGG - chr8_3:23340170-23340189 None:intergenic 40.0%
TTCGGAAGGTTATCTTAGGT+TGG - chr8_3:23340306-23340325 None:intergenic 40.0%
AACTGCCATCACAAAAGTCA+TGG - chr8_3:23340722-23340741 None:intergenic 40.0%
!! TTGTGATGGCAGTTTTATGC+AGG + chr8_3:23340728-23340747 Msa1282640:CDS 40.0%
! ATTTTCTTTCTCTAGCGACG+AGG - chr8_3:23340985-23341004 None:intergenic 40.0%
!! GGAACAATTTTGACAGTAGC+TGG + chr8_3:23341295-23341314 Msa1282640:intron 40.0%
TAAAGGTCCTATTGTGGAGA+TGG + chr8_3:23341339-23341358 Msa1282640:intron 40.0%
TCCTATTGTGGAGATGGTAT+GGG + chr8_3:23341345-23341364 Msa1282640:intron 40.0%
ACACATGAAACAACAACCAC+AGG + chr8_3:23341394-23341413 Msa1282640:intron 40.0%
ATCTCTTTCAGAAGATCCTG+TGG - chr8_3:23341413-23341432 None:intergenic 40.0%
! CAGGATCTTCTGAAAGAGAT+TGG + chr8_3:23341413-23341432 Msa1282640:intron 40.0%
TTATCATTGCCACCTTTGCT+TGG + chr8_3:23341455-23341474 Msa1282640:CDS 40.0%
TATCATTGCCACCTTTGCTT+GGG + chr8_3:23341456-23341475 Msa1282640:CDS 40.0%
!! TTCTGTATGGAGGATTGGTT+GGG + chr8_3:23341749-23341768 Msa1282640:CDS 40.0%
ATGGAAGATCCTTACAGCAT+AGG - chr8_3:23341796-23341815 None:intergenic 40.0%
TACATAGTATGCCAAGCTTG+AGG - chr8_3:23342207-23342226 None:intergenic 40.0%
AGCTTGGCATACTATGTACA+AGG + chr8_3:23342209-23342228 Msa1282640:CDS 40.0%
GCTTGGCATACTATGTACAA+GGG + chr8_3:23342210-23342229 Msa1282640:CDS 40.0%
! ATGTACAAGGGCTAGTGATT+AGG + chr8_3:23342222-23342241 Msa1282640:CDS 40.0%
!! GATCATCATAAGTGGGCTAA+AGG - chr8_3:23342273-23342292 None:intergenic 40.0%
CAGAGTAAATCTGTTCTGCA+AGG - chr8_3:23342322-23342341 None:intergenic 40.0%
CTTGCAGAACAGATTTACTC+TGG + chr8_3:23342320-23342339 Msa1282640:CDS 40.0%
CAGAACAGATTTACTCTGGA+GGG + chr8_3:23342324-23342343 Msa1282640:CDS 40.0%
! GGTGCCATCTTGATTGTTAT+AGG + chr8_3:23342977-23342996 Msa1282640:CDS 40.0%
CTCATTTGAGCACCCTTTAT+TGG - chr8_3:23343070-23343089 None:intergenic 40.0%
!! ATAAAGGGTGCTCAAATGAG+TGG + chr8_3:23343070-23343089 Msa1282640:CDS 40.0%
AAGGGACAAAATGGGGATAA+TGG - chr8_3:23343287-23343306 None:intergenic 40.0%
GGGAGGAAAACTTGGTAAAA+AGG - chr8_3:23343306-23343325 None:intergenic 40.0%
GAGGAAGAACACTTGCAAGA+AGG - chr8_3:23339918-23339937 None:intergenic 45.0%
GATAAACGACGAGGACATAG+TGG - chr8_3:23340146-23340165 None:intergenic 45.0%
AGACTAACCCAAGAAGAGCT+AGG - chr8_3:23340348-23340367 None:intergenic 45.0%
TCATTGCACACGAGAAGGTT+GGG - chr8_3:23340684-23340703 None:intergenic 45.0%
! TCCAGCCATGACTTTTGTGA+TGG + chr8_3:23340714-23340733 Msa1282640:CDS 45.0%
!! CTCTAGCGACGAGGTTTTAA+AGG - chr8_3:23340976-23340995 None:intergenic 45.0%
GTCCTATTGTGGAGATGGTA+TGG + chr8_3:23341344-23341363 Msa1282640:intron 45.0%
AAAGAGTGATGCCCAAGCAA+AGG - chr8_3:23341470-23341489 None:intergenic 45.0%
CTGAGCATGATCCTTCTGTA+TGG + chr8_3:23341736-23341755 Msa1282640:CDS 45.0%
AGCATGATCCTTCTGTATGG+AGG + chr8_3:23341739-23341758 Msa1282640:CDS 45.0%
GATCCTTCTGTATGGAGGAT+TGG + chr8_3:23341744-23341763 Msa1282640:CDS 45.0%
CAACCAATCCTCCATACAGA+AGG - chr8_3:23341750-23341769 None:intergenic 45.0%
! CTTCTGTATGGAGGATTGGT+TGG + chr8_3:23341748-23341767 Msa1282640:CDS 45.0%
TTGCTTCTGCCTATGCTGTA+AGG + chr8_3:23341784-23341803 Msa1282640:intron 45.0%
! GGGCTAGTGATTAGGAAGAA+AGG + chr8_3:23342230-23342249 Msa1282640:CDS 45.0%
CTAAAGGCAGTTGCAAAGAC+AGG - chr8_3:23342257-23342276 None:intergenic 45.0%
GCAGAACAGATTTACTCTGG+AGG + chr8_3:23342323-23342342 Msa1282640:CDS 45.0%
AGTAGGCACAAGAAATCACG+AGG - chr8_3:23342643-23342662 None:intergenic 45.0%
! TGTTCTATGGGGAAAGCACA+AGG + chr8_3:23343009-23343028 Msa1282640:CDS 45.0%
TGAGCACCCTTTATTGGCAA+AGG - chr8_3:23343064-23343083 None:intergenic 45.0%
GCTCAAATGAGTGGAAGTTC+AGG + chr8_3:23343079-23343098 Msa1282640:CDS 45.0%
AAACAGTACAAGGGGTGATG+GGG - chr8_3:23343328-23343347 None:intergenic 45.0%
CAAACAGTACAAGGGGTGAT+GGG - chr8_3:23343329-23343348 None:intergenic 45.0%
TCAAACAGTACAAGGGGTGA+TGG - chr8_3:23343330-23343349 None:intergenic 45.0%
!!! TAATATATTTTATTTTTGTT+AGG + chr8_3:23342172-23342191 Msa1282640:intron 5.0%
!!! AATATATTTTATTTTTGTTA+GGG + chr8_3:23342173-23342192 Msa1282640:intron 5.0%
!!! ATTTCTAATTTTAAATTTAT+AGG + chr8_3:23342594-23342613 Msa1282640:intron 5.0%
GGACATAGTGGCTCATTCCT+TGG - chr8_3:23340134-23340153 None:intergenic 50.0%
AAGCATGGCGATAAACGACG+AGG - chr8_3:23340155-23340174 None:intergenic 50.0%
CATTGCACACGAGAAGGTTG+GGG - chr8_3:23340683-23340702 None:intergenic 50.0%
CTCATTGCACACGAGAAGGT+TGG - chr8_3:23340685-23340704 None:intergenic 50.0%
GTTGCTCATTGCACACGAGA+AGG - chr8_3:23340689-23340708 None:intergenic 50.0%
GCCATCACAAAAGTCATGGC+TGG - chr8_3:23340718-23340737 None:intergenic 50.0%
GCCCATACCATCTCCACAAT+AGG - chr8_3:23341349-23341368 None:intergenic 50.0%
GGGAATTGTGACCTCAAGCT+TGG + chr8_3:23342193-23342212 Msa1282640:intron 50.0%
ACTATGTGGGTGCAGTGTGA+TGG + chr8_3:23342955-23342974 Msa1282640:intron 50.0%
CTATGTGGGTGCAGTGTGAT+GGG + chr8_3:23342956-23342975 Msa1282640:intron 50.0%
! AACAGTACAAGGGGTGATGG+GGG - chr8_3:23343327-23343346 None:intergenic 50.0%
GAGTGATGCCCAAGCAAAGG+TGG - chr8_3:23341467-23341486 None:intergenic 55.0%
! GTGATGGGGGGAGGAAAACT+TGG - chr8_3:23343314-23343333 None:intergenic 55.0%
!! ACAGTACAAGGGGTGATGGG+GGG - chr8_3:23343326-23343345 None:intergenic 55.0%
!! GTACAAGGGGTGATGGGGGG+AGG - chr8_3:23343323-23343342 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 23339900 23343426 23339900 ID=Msa1282640;Name=Msa1282640
chr8_3 mRNA 23339900 23343426 23339900 ID=Msa1282640-mRNA-1;Parent=Msa1282640;Name=Msa1282640-mRNA-1;_AED=0.17;_eAED=0.17;_QI=121|0.83|0.85|1|1|1|7|198|339
chr8_3 exon 23339900 23340217 23339900 ID=Msa1282640-mRNA-1:exon:8298;Parent=Msa1282640-mRNA-1
chr8_3 exon 23340297 23340359 23340297 ID=Msa1282640-mRNA-1:exon:8299;Parent=Msa1282640-mRNA-1
chr8_3 exon 23340633 23340749 23340633 ID=Msa1282640-mRNA-1:exon:8300;Parent=Msa1282640-mRNA-1
chr8_3 exon 23341429 23341498 23341429 ID=Msa1282640-mRNA-1:exon:8301;Parent=Msa1282640-mRNA-1
chr8_3 exon 23341639 23341800 23341639 ID=Msa1282640-mRNA-1:exon:8302;Parent=Msa1282640-mRNA-1
chr8_3 exon 23342194 23342345 23342194 ID=Msa1282640-mRNA-1:exon:8303;Parent=Msa1282640-mRNA-1
chr8_3 exon 23342970 23343426 23342970 ID=Msa1282640-mRNA-1:exon:8304;Parent=Msa1282640-mRNA-1
chr8_3 five_prime_UTR 23339900 23340020 23339900 ID=Msa1282640-mRNA-1:five_prime_utr;Parent=Msa1282640-mRNA-1
chr8_3 CDS 23340021 23340217 23340021 ID=Msa1282640-mRNA-1:cds;Parent=Msa1282640-mRNA-1
chr8_3 CDS 23340297 23340359 23340297 ID=Msa1282640-mRNA-1:cds;Parent=Msa1282640-mRNA-1
chr8_3 CDS 23340633 23340749 23340633 ID=Msa1282640-mRNA-1:cds;Parent=Msa1282640-mRNA-1
chr8_3 CDS 23341429 23341498 23341429 ID=Msa1282640-mRNA-1:cds;Parent=Msa1282640-mRNA-1
chr8_3 CDS 23341639 23341800 23341639 ID=Msa1282640-mRNA-1:cds;Parent=Msa1282640-mRNA-1
chr8_3 CDS 23342194 23342345 23342194 ID=Msa1282640-mRNA-1:cds;Parent=Msa1282640-mRNA-1
chr8_3 CDS 23342970 23343228 23342970 ID=Msa1282640-mRNA-1:cds;Parent=Msa1282640-mRNA-1
chr8_3 three_prime_UTR 23343229 23343426 23343229 ID=Msa1282640-mRNA-1:three_prime_utr;Parent=Msa1282640-mRNA-1
Gene Sequence

>Msa1282640

ATGGCCATGGAAAAATCAAATTCCTTTGAGAACATGAAGCATTACACTGCTATGATATGTTTACAATTTGGCTATGCTGGTATGAACATTATCACTAAGGTTTCTCTCAACCAAGGAATGAGCCACTATGTCCTCGTCGTTTATCGCCATGCTTTTGCAACTGCTTCTATAGCTCCATTTGCATTTATGTTTGAGAGGAAAGGCCAACCTAAGATAACCTTCCGAATTTTCTTGCAAATTTTCATCCTAGCTCTTCTTGGGCCAGTGATTGATCAAAATTTCTATTATGCTGGATTGAAGCTCACATCCCCAACCTTCTCGTGTGCAATGAGCAACGTGCTTCCAGCCATGACTTTTGTGATGGCAGTTTTATGCAGAGATTGGATTTTAGGGTGCACTTTTCTTATCATTGCCACCTTTGCTTGGGCATCACTCTTTGTTTTGCAAGCAAAAGTTATAGAGACGTACAAGCATCATCAACTAAGTCTTACTTCACTTGTGGTCTTTATTGGTACTCTTCAAGCTATTGCTGTTACTTTTGTGGCTGAGCATGATCCTTCTGTATGGAGGATTGGTTGGGATATGAGTTTACTTGCTTCTGCCTATGCTGGAATTGTGACCTCAAGCTTGGCATACTATGTACAAGGGCTAGTGATTAGGAAGAAAGGACCTGTCTTTGCAACTGCCTTTAGCCCACTTATGATGATCATTGTTGCAATCATGGGATCCTTTATCCTTGCAGAACAGATTTACTCTGGAGGTGTGATGGGTGCCATCTTGATTGTTATAGGCTTATATTCTGTTCTATGGGGAAAGCACAAGGAAGAAATAGAGAGAAAAGTAGATGATATTCCTTTGCCAATAAAGGGTGCTCAAATGAGTGGAAGTTCAGGTCTAGTGATTGATGACACAGATCAAGTAAAACATGGTCAAGTTGAAGATACCAACAACATGCTTTCTTCAGTTGCAATAAGCATTCCTACTAGAGAACCTACTACTAATAATGTTAACCAGCAATAA

Protein sequence

>Msa1282640

MAMEKSNSFENMKHYTAMICLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATASIAPFAFMFERKGQPKITFRIFLQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFVMAVLCRDWILGCTFLIIATFAWASLFVLQAKVIETYKHHQLSLTSLVVFIGTLQAIAVTFVAEHDPSVWRIGWDMSLLASAYAGIVTSSLAYYVQGLVIRKKGPVFATAFSPLMMIIVAIMGSFILAEQIYSGGVMGAILIVIGLYSVLWGKHKEEIERKVDDIPLPIKGAQMSGSSGLVIDDTDQVKHGQVEDTNNMLSSVAISIPTREPTTNNVNQQ*